Multiple sequence alignment - TraesCS6D01G406200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G406200 chr6D 100.000 3179 0 0 1 3179 472812459 472809281 0.000000e+00 5871.0
1 TraesCS6D01G406200 chr6D 75.815 583 105 25 1000 1574 473114916 473114362 2.430000e-66 263.0
2 TraesCS6D01G406200 chr6D 95.349 43 1 1 604 645 472924931 472924973 2.050000e-07 67.6
3 TraesCS6D01G406200 chr6B 93.743 1726 78 15 925 2623 717930694 717928972 0.000000e+00 2562.0
4 TraesCS6D01G406200 chr6B 94.118 561 24 3 2623 3179 717928903 717928348 0.000000e+00 845.0
5 TraesCS6D01G406200 chr6B 78.996 1195 226 19 1000 2183 718594183 718593003 0.000000e+00 793.0
6 TraesCS6D01G406200 chr6A 95.531 895 18 3 1387 2281 616965547 616966419 0.000000e+00 1411.0
7 TraesCS6D01G406200 chr6A 85.252 278 16 11 486 759 616965272 616965528 2.430000e-66 263.0
8 TraesCS6D01G406200 chr6A 78.571 140 27 3 975 1112 616892487 616892349 4.370000e-14 89.8
9 TraesCS6D01G406200 chr6A 97.826 46 1 0 324 369 616965038 616965083 2.630000e-11 80.5
10 TraesCS6D01G406200 chr7D 79.276 801 144 12 1419 2202 549834795 549835590 1.000000e-149 540.0
11 TraesCS6D01G406200 chr7B 79.315 788 147 9 1408 2184 594119185 594119967 3.610000e-149 538.0
12 TraesCS6D01G406200 chr7B 75.235 1171 241 32 1066 2202 594121913 594123068 7.870000e-141 510.0
13 TraesCS6D01G406200 chr5B 74.678 1319 269 47 896 2184 511372983 511371700 2.810000e-145 525.0
14 TraesCS6D01G406200 chr5D 77.705 915 164 31 1284 2184 423535014 423534126 1.010000e-144 523.0
15 TraesCS6D01G406200 chr7A 75.647 1121 229 24 1086 2184 635273799 635274897 4.700000e-143 518.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G406200 chr6D 472809281 472812459 3178 True 5871.000000 5871 100.000000 1 3179 1 chr6D.!!$R1 3178
1 TraesCS6D01G406200 chr6D 473114362 473114916 554 True 263.000000 263 75.815000 1000 1574 1 chr6D.!!$R2 574
2 TraesCS6D01G406200 chr6B 717928348 717930694 2346 True 1703.500000 2562 93.930500 925 3179 2 chr6B.!!$R2 2254
3 TraesCS6D01G406200 chr6B 718593003 718594183 1180 True 793.000000 793 78.996000 1000 2183 1 chr6B.!!$R1 1183
4 TraesCS6D01G406200 chr6A 616965038 616966419 1381 False 584.833333 1411 92.869667 324 2281 3 chr6A.!!$F1 1957
5 TraesCS6D01G406200 chr7D 549834795 549835590 795 False 540.000000 540 79.276000 1419 2202 1 chr7D.!!$F1 783
6 TraesCS6D01G406200 chr7B 594119185 594123068 3883 False 524.000000 538 77.275000 1066 2202 2 chr7B.!!$F1 1136
7 TraesCS6D01G406200 chr5B 511371700 511372983 1283 True 525.000000 525 74.678000 896 2184 1 chr5B.!!$R1 1288
8 TraesCS6D01G406200 chr5D 423534126 423535014 888 True 523.000000 523 77.705000 1284 2184 1 chr5D.!!$R1 900
9 TraesCS6D01G406200 chr7A 635273799 635274897 1098 False 518.000000 518 75.647000 1086 2184 1 chr7A.!!$F1 1098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 707 0.031721 GACTTTGTGTCCTCGTCCGT 59.968 55.0 0.0 0.0 39.69 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2617 4391 0.035458 ACGGGACTCTCCAGCAAAAG 59.965 55.0 0.0 0.0 38.64 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.693245 GCGATGCAGTACCGTGAG 58.307 61.111 0.00 0.00 0.00 3.51
18 19 1.138883 GCGATGCAGTACCGTGAGA 59.861 57.895 0.00 0.00 0.00 3.27
19 20 0.457853 GCGATGCAGTACCGTGAGAA 60.458 55.000 0.00 0.00 0.00 2.87
20 21 1.550065 CGATGCAGTACCGTGAGAAG 58.450 55.000 0.00 0.00 0.00 2.85
22 23 0.608130 ATGCAGTACCGTGAGAAGCA 59.392 50.000 0.00 0.00 34.78 3.91
23 24 0.319555 TGCAGTACCGTGAGAAGCAC 60.320 55.000 0.00 0.00 44.21 4.40
37 38 3.555428 GCACAACGCTGTCTCCTC 58.445 61.111 0.00 0.00 37.77 3.71
38 39 2.029844 GCACAACGCTGTCTCCTCC 61.030 63.158 0.00 0.00 37.77 4.30
40 41 0.034059 CACAACGCTGTCTCCTCCTT 59.966 55.000 0.00 0.00 31.64 3.36
41 42 0.034059 ACAACGCTGTCTCCTCCTTG 59.966 55.000 0.00 0.00 0.00 3.61
42 43 0.034059 CAACGCTGTCTCCTCCTTGT 59.966 55.000 0.00 0.00 0.00 3.16
43 44 0.034059 AACGCTGTCTCCTCCTTGTG 59.966 55.000 0.00 0.00 0.00 3.33
45 46 0.389166 CGCTGTCTCCTCCTTGTGAC 60.389 60.000 0.00 0.00 0.00 3.67
46 47 0.036858 GCTGTCTCCTCCTTGTGACC 60.037 60.000 0.00 0.00 0.00 4.02
48 49 1.079750 GTCTCCTCCTTGTGACCGC 60.080 63.158 0.00 0.00 0.00 5.68
49 50 2.266055 CTCCTCCTTGTGACCGCC 59.734 66.667 0.00 0.00 0.00 6.13
50 51 3.649277 CTCCTCCTTGTGACCGCCG 62.649 68.421 0.00 0.00 0.00 6.46
51 52 3.691342 CCTCCTTGTGACCGCCGA 61.691 66.667 0.00 0.00 0.00 5.54
52 53 2.342279 CTCCTTGTGACCGCCGAA 59.658 61.111 0.00 0.00 0.00 4.30
53 54 1.738099 CTCCTTGTGACCGCCGAAG 60.738 63.158 0.00 0.00 0.00 3.79
54 55 2.154798 CTCCTTGTGACCGCCGAAGA 62.155 60.000 0.00 0.00 0.00 2.87
55 56 1.738099 CCTTGTGACCGCCGAAGAG 60.738 63.158 0.00 0.00 0.00 2.85
56 57 1.289066 CTTGTGACCGCCGAAGAGA 59.711 57.895 0.00 0.00 0.00 3.10
57 58 0.319555 CTTGTGACCGCCGAAGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
58 59 0.319555 TTGTGACCGCCGAAGAGAAG 60.320 55.000 0.00 0.00 0.00 2.85
59 60 1.446272 GTGACCGCCGAAGAGAAGG 60.446 63.158 0.00 0.00 0.00 3.46
65 66 4.865865 CCGAAGAGAAGGCCCATC 57.134 61.111 0.00 0.00 0.00 3.51
66 67 1.907739 CCGAAGAGAAGGCCCATCA 59.092 57.895 0.00 0.00 0.00 3.07
67 68 0.462759 CCGAAGAGAAGGCCCATCAC 60.463 60.000 0.00 0.00 0.00 3.06
68 69 0.462759 CGAAGAGAAGGCCCATCACC 60.463 60.000 0.00 0.00 0.00 4.02
70 71 2.119495 GAAGAGAAGGCCCATCACCTA 58.881 52.381 0.00 0.00 36.14 3.08
71 72 1.799933 AGAGAAGGCCCATCACCTAG 58.200 55.000 0.00 0.00 36.14 3.02
72 73 0.761802 GAGAAGGCCCATCACCTAGG 59.238 60.000 7.41 7.41 36.14 3.02
77 78 2.822399 CCCATCACCTAGGGCGAC 59.178 66.667 14.81 0.00 38.44 5.19
80 81 3.537874 ATCACCTAGGGCGACGGC 61.538 66.667 14.81 13.84 38.90 5.68
84 85 4.647615 CCTAGGGCGACGGCGATG 62.648 72.222 18.90 6.30 41.24 3.84
85 86 4.647615 CTAGGGCGACGGCGATGG 62.648 72.222 18.90 0.00 41.24 3.51
101 102 2.514824 GGAGCCATTCCACCGCTC 60.515 66.667 0.00 0.00 46.01 5.03
118 119 4.996434 CGCGCCTCCCCATGGATC 62.996 72.222 15.22 0.00 40.80 3.36
119 120 3.564218 GCGCCTCCCCATGGATCT 61.564 66.667 15.22 0.00 40.80 2.75
121 122 2.746359 GCCTCCCCATGGATCTCG 59.254 66.667 15.22 0.00 40.80 4.04
123 124 2.341543 CTCCCCATGGATCTCGCG 59.658 66.667 15.22 0.00 40.80 5.87
124 125 3.873026 CTCCCCATGGATCTCGCGC 62.873 68.421 15.22 0.00 40.80 6.86
126 127 2.969238 CCCATGGATCTCGCGCAC 60.969 66.667 15.22 0.00 0.00 5.34
127 128 2.202919 CCATGGATCTCGCGCACA 60.203 61.111 5.56 0.00 0.00 4.57
128 129 2.242572 CCATGGATCTCGCGCACAG 61.243 63.158 5.56 1.89 0.00 3.66
129 130 1.227060 CATGGATCTCGCGCACAGA 60.227 57.895 8.75 8.56 0.00 3.41
130 131 0.807275 CATGGATCTCGCGCACAGAA 60.807 55.000 8.75 0.00 0.00 3.02
131 132 0.529337 ATGGATCTCGCGCACAGAAG 60.529 55.000 8.75 0.00 0.00 2.85
133 134 1.807165 GATCTCGCGCACAGAAGCA 60.807 57.895 8.75 0.00 0.00 3.91
134 135 1.354337 GATCTCGCGCACAGAAGCAA 61.354 55.000 8.75 0.00 0.00 3.91
136 137 2.023771 CTCGCGCACAGAAGCAAGA 61.024 57.895 8.75 0.00 0.00 3.02
138 139 2.558313 GCGCACAGAAGCAAGACC 59.442 61.111 0.30 0.00 0.00 3.85
139 140 2.253758 GCGCACAGAAGCAAGACCA 61.254 57.895 0.30 0.00 0.00 4.02
140 141 1.571460 CGCACAGAAGCAAGACCAC 59.429 57.895 0.00 0.00 0.00 4.16
141 142 1.571460 GCACAGAAGCAAGACCACG 59.429 57.895 0.00 0.00 0.00 4.94
142 143 1.845809 GCACAGAAGCAAGACCACGG 61.846 60.000 0.00 0.00 0.00 4.94
143 144 0.249868 CACAGAAGCAAGACCACGGA 60.250 55.000 0.00 0.00 0.00 4.69
144 145 0.468226 ACAGAAGCAAGACCACGGAA 59.532 50.000 0.00 0.00 0.00 4.30
145 146 1.072331 ACAGAAGCAAGACCACGGAAT 59.928 47.619 0.00 0.00 0.00 3.01
147 148 2.932614 CAGAAGCAAGACCACGGAATAG 59.067 50.000 0.00 0.00 0.00 1.73
149 150 0.460284 AGCAAGACCACGGAATAGCG 60.460 55.000 0.00 0.00 0.00 4.26
151 152 1.806623 GCAAGACCACGGAATAGCGAT 60.807 52.381 0.00 0.00 0.00 4.58
152 153 1.860950 CAAGACCACGGAATAGCGATG 59.139 52.381 0.00 0.00 0.00 3.84
153 154 0.249489 AGACCACGGAATAGCGATGC 60.249 55.000 0.00 0.00 0.00 3.91
154 155 1.548973 GACCACGGAATAGCGATGCG 61.549 60.000 0.00 0.00 37.66 4.73
155 156 2.310233 CCACGGAATAGCGATGCGG 61.310 63.158 5.50 0.00 35.81 5.69
156 157 2.661866 ACGGAATAGCGATGCGGC 60.662 61.111 0.00 0.00 35.81 6.53
157 158 3.767230 CGGAATAGCGATGCGGCG 61.767 66.667 0.51 0.51 38.18 6.46
158 159 2.661866 GGAATAGCGATGCGGCGT 60.662 61.111 9.37 0.00 38.18 5.68
160 161 2.988549 GAATAGCGATGCGGCGTCG 61.989 63.158 33.60 33.60 44.52 5.12
172 173 4.516195 GCGTCGGAGGGGAAGAGC 62.516 72.222 0.00 0.00 0.00 4.09
173 174 3.068691 CGTCGGAGGGGAAGAGCA 61.069 66.667 0.00 0.00 0.00 4.26
174 175 2.896443 GTCGGAGGGGAAGAGCAG 59.104 66.667 0.00 0.00 0.00 4.24
175 176 3.077556 TCGGAGGGGAAGAGCAGC 61.078 66.667 0.00 0.00 0.00 5.25
176 177 4.168291 CGGAGGGGAAGAGCAGCC 62.168 72.222 0.00 0.00 0.00 4.85
177 178 2.690510 GGAGGGGAAGAGCAGCCT 60.691 66.667 0.00 0.00 0.00 4.58
179 180 3.695747 GAGGGGAAGAGCAGCCTGC 62.696 68.421 9.13 9.13 45.46 4.85
203 204 4.408821 TGGCGGTGGTGGCAGATC 62.409 66.667 0.00 0.00 39.79 2.75
204 205 4.408821 GGCGGTGGTGGCAGATCA 62.409 66.667 0.00 0.00 0.00 2.92
205 206 2.821366 GCGGTGGTGGCAGATCAG 60.821 66.667 0.00 0.00 0.00 2.90
206 207 2.821366 CGGTGGTGGCAGATCAGC 60.821 66.667 0.60 0.60 35.87 4.26
207 208 2.352422 GGTGGTGGCAGATCAGCA 59.648 61.111 12.54 0.00 42.01 4.41
209 210 3.159615 TGGTGGCAGATCAGCACA 58.840 55.556 12.54 4.93 39.79 4.57
210 211 1.002990 TGGTGGCAGATCAGCACAG 60.003 57.895 12.54 0.00 39.79 3.66
211 212 1.002868 GGTGGCAGATCAGCACAGT 60.003 57.895 12.54 0.00 35.45 3.55
212 213 1.303799 GGTGGCAGATCAGCACAGTG 61.304 60.000 12.54 0.00 35.45 3.66
215 216 0.743701 GGCAGATCAGCACAGTGGAG 60.744 60.000 12.54 0.00 35.83 3.86
216 217 0.743701 GCAGATCAGCACAGTGGAGG 60.744 60.000 5.05 0.00 0.00 4.30
217 218 0.900421 CAGATCAGCACAGTGGAGGA 59.100 55.000 1.84 0.00 0.00 3.71
218 219 1.134759 CAGATCAGCACAGTGGAGGAG 60.135 57.143 1.84 0.00 0.00 3.69
219 220 0.177604 GATCAGCACAGTGGAGGAGG 59.822 60.000 1.84 0.00 0.00 4.30
220 221 0.546267 ATCAGCACAGTGGAGGAGGT 60.546 55.000 1.84 0.00 0.00 3.85
221 222 1.004080 CAGCACAGTGGAGGAGGTG 60.004 63.158 1.84 0.00 0.00 4.00
222 223 2.219875 AGCACAGTGGAGGAGGTGG 61.220 63.158 1.84 0.00 0.00 4.61
223 224 2.520536 GCACAGTGGAGGAGGTGGT 61.521 63.158 1.84 0.00 0.00 4.16
224 225 1.372683 CACAGTGGAGGAGGTGGTG 59.627 63.158 0.00 0.00 0.00 4.17
225 226 1.074471 ACAGTGGAGGAGGTGGTGT 60.074 57.895 0.00 0.00 0.00 4.16
226 227 1.372683 CAGTGGAGGAGGTGGTGTG 59.627 63.158 0.00 0.00 0.00 3.82
227 228 1.074471 AGTGGAGGAGGTGGTGTGT 60.074 57.895 0.00 0.00 0.00 3.72
228 229 1.071471 GTGGAGGAGGTGGTGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
230 231 2.520536 GGAGGAGGTGGTGTGTGCT 61.521 63.158 0.00 0.00 0.00 4.40
232 233 0.886490 GAGGAGGTGGTGTGTGCTTG 60.886 60.000 0.00 0.00 0.00 4.01
233 234 1.148273 GGAGGTGGTGTGTGCTTGA 59.852 57.895 0.00 0.00 0.00 3.02
234 235 0.465460 GGAGGTGGTGTGTGCTTGAA 60.465 55.000 0.00 0.00 0.00 2.69
236 237 1.103398 AGGTGGTGTGTGCTTGAAGC 61.103 55.000 10.84 10.84 42.82 3.86
246 247 3.509517 GCTTGAAGCAGGGATGGAT 57.490 52.632 13.09 0.00 41.89 3.41
247 248 1.030457 GCTTGAAGCAGGGATGGATG 58.970 55.000 13.09 0.00 41.89 3.51
248 249 1.409241 GCTTGAAGCAGGGATGGATGA 60.409 52.381 13.09 0.00 41.89 2.92
250 251 1.883678 TGAAGCAGGGATGGATGAGA 58.116 50.000 0.00 0.00 0.00 3.27
251 252 2.199208 TGAAGCAGGGATGGATGAGAA 58.801 47.619 0.00 0.00 0.00 2.87
252 253 2.172082 TGAAGCAGGGATGGATGAGAAG 59.828 50.000 0.00 0.00 0.00 2.85
253 254 0.473326 AGCAGGGATGGATGAGAAGC 59.527 55.000 0.00 0.00 0.00 3.86
254 255 0.536915 GCAGGGATGGATGAGAAGCC 60.537 60.000 0.00 0.00 0.00 4.35
257 258 1.424302 AGGGATGGATGAGAAGCCATG 59.576 52.381 0.00 0.00 44.60 3.66
258 259 1.547223 GGGATGGATGAGAAGCCATGG 60.547 57.143 7.63 7.63 44.60 3.66
259 260 1.245732 GATGGATGAGAAGCCATGGC 58.754 55.000 30.12 30.12 44.60 4.40
260 261 0.536687 ATGGATGAGAAGCCATGGCG 60.537 55.000 30.50 0.00 43.04 5.69
261 262 2.931941 ATGGATGAGAAGCCATGGCGA 61.932 52.381 30.50 13.79 43.04 5.54
262 263 4.212791 ATGGATGAGAAGCCATGGCGAT 62.213 50.000 30.50 23.35 43.04 4.58
284 285 3.741476 GCACAAGCGCCCTTCCTG 61.741 66.667 2.29 0.00 0.00 3.86
285 286 2.281761 CACAAGCGCCCTTCCTGT 60.282 61.111 2.29 0.00 0.00 4.00
286 287 1.898574 CACAAGCGCCCTTCCTGTT 60.899 57.895 2.29 0.00 0.00 3.16
287 288 1.898574 ACAAGCGCCCTTCCTGTTG 60.899 57.895 2.29 1.34 0.00 3.33
288 289 2.985847 AAGCGCCCTTCCTGTTGC 60.986 61.111 2.29 0.00 0.00 4.17
289 290 3.497884 AAGCGCCCTTCCTGTTGCT 62.498 57.895 2.29 0.00 0.00 3.91
291 292 1.452108 GCGCCCTTCCTGTTGCTAT 60.452 57.895 0.00 0.00 0.00 2.97
292 293 1.440145 GCGCCCTTCCTGTTGCTATC 61.440 60.000 0.00 0.00 0.00 2.08
293 294 0.107703 CGCCCTTCCTGTTGCTATCA 60.108 55.000 0.00 0.00 0.00 2.15
295 296 2.019156 GCCCTTCCTGTTGCTATCACC 61.019 57.143 0.00 0.00 0.00 4.02
296 297 1.656652 CCTTCCTGTTGCTATCACCG 58.343 55.000 0.00 0.00 0.00 4.94
297 298 1.656652 CTTCCTGTTGCTATCACCGG 58.343 55.000 0.00 0.00 0.00 5.28
298 299 0.251916 TTCCTGTTGCTATCACCGGG 59.748 55.000 6.32 0.00 32.84 5.73
299 300 0.907704 TCCTGTTGCTATCACCGGGT 60.908 55.000 6.32 0.00 33.30 5.28
300 301 0.744414 CCTGTTGCTATCACCGGGTG 60.744 60.000 21.27 21.27 34.45 4.61
301 302 0.036388 CTGTTGCTATCACCGGGTGT 60.036 55.000 25.53 15.60 34.79 4.16
302 303 0.321210 TGTTGCTATCACCGGGTGTG 60.321 55.000 25.53 17.35 46.88 3.82
311 312 2.037871 ACCGGGTGTGAATTGTTGC 58.962 52.632 6.32 0.00 0.00 4.17
312 313 0.467290 ACCGGGTGTGAATTGTTGCT 60.467 50.000 6.32 0.00 0.00 3.91
313 314 0.039256 CCGGGTGTGAATTGTTGCTG 60.039 55.000 0.00 0.00 0.00 4.41
314 315 0.039256 CGGGTGTGAATTGTTGCTGG 60.039 55.000 0.00 0.00 0.00 4.85
315 316 0.318120 GGGTGTGAATTGTTGCTGGG 59.682 55.000 0.00 0.00 0.00 4.45
316 317 1.327303 GGTGTGAATTGTTGCTGGGA 58.673 50.000 0.00 0.00 0.00 4.37
317 318 1.270550 GGTGTGAATTGTTGCTGGGAG 59.729 52.381 0.00 0.00 0.00 4.30
320 321 3.568007 GTGTGAATTGTTGCTGGGAGTAA 59.432 43.478 0.00 0.00 0.00 2.24
321 322 4.037446 GTGTGAATTGTTGCTGGGAGTAAA 59.963 41.667 0.00 0.00 0.00 2.01
323 324 5.221224 TGTGAATTGTTGCTGGGAGTAAAAG 60.221 40.000 0.00 0.00 0.00 2.27
324 325 3.942130 ATTGTTGCTGGGAGTAAAAGC 57.058 42.857 0.00 0.00 37.46 3.51
325 326 1.616159 TGTTGCTGGGAGTAAAAGCC 58.384 50.000 0.00 0.00 36.05 4.35
327 328 1.960689 GTTGCTGGGAGTAAAAGCCAA 59.039 47.619 0.00 0.00 36.05 4.52
369 370 0.949105 GGCACGCGAAGAAAAGAGGA 60.949 55.000 15.93 0.00 0.00 3.71
378 417 2.821991 AGAAAAGAGGAGTGACGTGG 57.178 50.000 0.00 0.00 0.00 4.94
405 444 4.271049 CGAAATCTGCATCCTAATTCGTGT 59.729 41.667 0.00 0.00 34.97 4.49
435 475 4.702826 GCTGTCGTCACGTTGCGC 62.703 66.667 0.00 0.00 0.00 6.09
466 506 0.110056 CCAGCAAACGTCAGATGCAC 60.110 55.000 15.06 0.00 42.45 4.57
489 529 9.312146 GCACAACATTTTCGTTAATTAATTTGG 57.688 29.630 5.91 0.00 0.00 3.28
540 617 8.999220 AGTTACTACAGATAAGTTTTGCCTAC 57.001 34.615 0.00 0.00 0.00 3.18
594 671 0.388907 ATCGTGTGCAATTTGGCAGC 60.389 50.000 0.00 0.00 45.96 5.25
608 685 2.526120 GCAGCTTGCCGTACCGATC 61.526 63.158 0.00 0.00 37.42 3.69
610 687 1.141881 AGCTTGCCGTACCGATCAG 59.858 57.895 0.00 0.00 0.00 2.90
612 689 1.813859 CTTGCCGTACCGATCAGGA 59.186 57.895 10.05 0.00 45.00 3.86
614 691 0.968901 TTGCCGTACCGATCAGGACT 60.969 55.000 10.05 0.00 45.00 3.85
615 692 0.968901 TGCCGTACCGATCAGGACTT 60.969 55.000 10.05 0.00 45.00 3.01
616 693 0.175073 GCCGTACCGATCAGGACTTT 59.825 55.000 10.05 0.00 45.00 2.66
619 696 2.259618 CGTACCGATCAGGACTTTGTG 58.740 52.381 10.05 0.00 45.00 3.33
621 698 2.457366 ACCGATCAGGACTTTGTGTC 57.543 50.000 10.05 0.00 45.00 3.67
629 706 2.810486 GACTTTGTGTCCTCGTCCG 58.190 57.895 0.00 0.00 39.69 4.79
630 707 0.031721 GACTTTGTGTCCTCGTCCGT 59.968 55.000 0.00 0.00 39.69 4.69
631 708 0.249322 ACTTTGTGTCCTCGTCCGTG 60.249 55.000 0.00 0.00 0.00 4.94
633 710 0.176219 TTTGTGTCCTCGTCCGTGTT 59.824 50.000 0.00 0.00 0.00 3.32
634 711 1.031235 TTGTGTCCTCGTCCGTGTTA 58.969 50.000 0.00 0.00 0.00 2.41
635 712 0.594602 TGTGTCCTCGTCCGTGTTAG 59.405 55.000 0.00 0.00 0.00 2.34
636 713 0.877071 GTGTCCTCGTCCGTGTTAGA 59.123 55.000 0.00 0.00 0.00 2.10
750 827 1.908247 CAACCGTGACAAACAAACGTG 59.092 47.619 0.00 0.00 35.59 4.49
751 828 1.440708 ACCGTGACAAACAAACGTGA 58.559 45.000 0.00 0.00 35.59 4.35
752 829 1.395608 ACCGTGACAAACAAACGTGAG 59.604 47.619 0.00 0.00 35.59 3.51
754 831 2.094575 CCGTGACAAACAAACGTGAGAA 59.905 45.455 0.00 0.00 35.59 2.87
755 832 3.242608 CCGTGACAAACAAACGTGAGAAT 60.243 43.478 0.00 0.00 35.59 2.40
757 834 4.791163 CGTGACAAACAAACGTGAGAATTT 59.209 37.500 0.00 0.00 32.79 1.82
759 836 6.466413 CGTGACAAACAAACGTGAGAATTTTA 59.534 34.615 0.00 0.00 32.79 1.52
760 837 7.007546 CGTGACAAACAAACGTGAGAATTTTAA 59.992 33.333 0.00 0.00 32.79 1.52
761 838 8.803799 GTGACAAACAAACGTGAGAATTTTAAT 58.196 29.630 0.00 0.00 0.00 1.40
764 841 9.790389 ACAAACAAACGTGAGAATTTTAATACA 57.210 25.926 0.00 0.00 0.00 2.29
769 846 9.221775 CAAACGTGAGAATTTTAATACATAGGC 57.778 33.333 0.00 0.00 0.00 3.93
772 849 8.612619 ACGTGAGAATTTTAATACATAGGCTTG 58.387 33.333 0.00 0.00 0.00 4.01
773 850 7.587757 CGTGAGAATTTTAATACATAGGCTTGC 59.412 37.037 0.00 0.00 0.00 4.01
774 851 8.405531 GTGAGAATTTTAATACATAGGCTTGCA 58.594 33.333 0.00 0.00 0.00 4.08
775 852 8.965819 TGAGAATTTTAATACATAGGCTTGCAA 58.034 29.630 0.00 0.00 0.00 4.08
777 854 8.748412 AGAATTTTAATACATAGGCTTGCAACA 58.252 29.630 0.00 0.00 0.00 3.33
778 855 9.364989 GAATTTTAATACATAGGCTTGCAACAA 57.635 29.630 0.00 0.00 0.00 2.83
781 858 5.720371 AATACATAGGCTTGCAACAACAA 57.280 34.783 0.00 0.00 0.00 2.83
782 859 3.369546 ACATAGGCTTGCAACAACAAC 57.630 42.857 0.00 0.00 0.00 3.32
783 860 2.035832 ACATAGGCTTGCAACAACAACC 59.964 45.455 0.00 0.00 0.00 3.77
784 861 0.665835 TAGGCTTGCAACAACAACCG 59.334 50.000 0.00 0.00 0.00 4.44
786 863 1.145162 GGCTTGCAACAACAACCGTG 61.145 55.000 0.00 0.00 0.00 4.94
787 864 0.179150 GCTTGCAACAACAACCGTGA 60.179 50.000 0.00 0.00 0.00 4.35
788 865 1.544686 CTTGCAACAACAACCGTGAC 58.455 50.000 0.00 0.00 0.00 3.67
789 866 0.881796 TTGCAACAACAACCGTGACA 59.118 45.000 0.00 0.00 0.00 3.58
790 867 0.881796 TGCAACAACAACCGTGACAA 59.118 45.000 0.00 0.00 0.00 3.18
791 868 1.269723 TGCAACAACAACCGTGACAAA 59.730 42.857 0.00 0.00 0.00 2.83
793 870 2.922758 GCAACAACAACCGTGACAAACA 60.923 45.455 0.00 0.00 0.00 2.83
794 871 3.309388 CAACAACAACCGTGACAAACAA 58.691 40.909 0.00 0.00 0.00 2.83
795 872 3.644884 ACAACAACCGTGACAAACAAA 57.355 38.095 0.00 0.00 0.00 2.83
796 873 3.310246 ACAACAACCGTGACAAACAAAC 58.690 40.909 0.00 0.00 0.00 2.93
797 874 2.250348 ACAACCGTGACAAACAAACG 57.750 45.000 0.00 0.00 37.07 3.60
798 875 0.911184 CAACCGTGACAAACAAACGC 59.089 50.000 0.00 0.00 36.02 4.84
821 898 6.378582 GCGAGAATTTTTGGATCAACAACTA 58.621 36.000 0.00 0.00 0.00 2.24
822 899 6.305638 GCGAGAATTTTTGGATCAACAACTAC 59.694 38.462 0.00 0.00 0.00 2.73
823 900 6.801862 CGAGAATTTTTGGATCAACAACTACC 59.198 38.462 0.00 0.00 0.00 3.18
824 901 7.521423 CGAGAATTTTTGGATCAACAACTACCA 60.521 37.037 0.00 0.00 0.00 3.25
825 902 7.661040 AGAATTTTTGGATCAACAACTACCAG 58.339 34.615 0.00 0.00 32.16 4.00
826 903 4.846779 TTTTGGATCAACAACTACCAGC 57.153 40.909 0.00 0.00 32.16 4.85
827 904 2.489938 TGGATCAACAACTACCAGCC 57.510 50.000 0.00 0.00 0.00 4.85
829 906 0.727398 GATCAACAACTACCAGCCGC 59.273 55.000 0.00 0.00 0.00 6.53
830 907 0.676782 ATCAACAACTACCAGCCGCC 60.677 55.000 0.00 0.00 0.00 6.13
831 908 2.358247 AACAACTACCAGCCGCCG 60.358 61.111 0.00 0.00 0.00 6.46
832 909 3.894547 AACAACTACCAGCCGCCGG 62.895 63.158 0.00 0.00 0.00 6.13
846 923 1.077716 GCCGGTGCAAACCCTCTAT 60.078 57.895 1.90 0.00 37.47 1.98
847 924 1.376609 GCCGGTGCAAACCCTCTATG 61.377 60.000 1.90 0.00 37.47 2.23
848 925 0.035439 CCGGTGCAAACCCTCTATGT 60.035 55.000 0.00 0.00 0.00 2.29
850 927 2.159382 CGGTGCAAACCCTCTATGTTT 58.841 47.619 0.00 0.00 36.40 2.83
851 928 2.161609 CGGTGCAAACCCTCTATGTTTC 59.838 50.000 0.00 0.00 33.82 2.78
852 929 2.492088 GGTGCAAACCCTCTATGTTTCC 59.508 50.000 0.00 0.00 33.82 3.13
853 930 2.161609 GTGCAAACCCTCTATGTTTCCG 59.838 50.000 0.00 0.00 33.82 4.30
855 932 1.743394 CAAACCCTCTATGTTTCCGGC 59.257 52.381 0.00 0.00 33.82 6.13
856 933 0.107848 AACCCTCTATGTTTCCGGCG 60.108 55.000 0.00 0.00 0.00 6.46
858 935 0.529992 CCCTCTATGTTTCCGGCGAC 60.530 60.000 9.30 0.00 0.00 5.19
859 936 0.174845 CCTCTATGTTTCCGGCGACA 59.825 55.000 9.30 5.18 0.00 4.35
860 937 1.404986 CCTCTATGTTTCCGGCGACAA 60.405 52.381 9.30 0.00 0.00 3.18
861 938 1.927174 CTCTATGTTTCCGGCGACAAG 59.073 52.381 9.30 5.86 0.00 3.16
862 939 1.006832 CTATGTTTCCGGCGACAAGG 58.993 55.000 9.30 0.00 0.00 3.61
864 941 2.031465 GTTTCCGGCGACAAGGGA 59.969 61.111 9.30 0.00 0.00 4.20
865 942 2.033194 GTTTCCGGCGACAAGGGAG 61.033 63.158 9.30 0.00 0.00 4.30
866 943 3.894547 TTTCCGGCGACAAGGGAGC 62.895 63.158 9.30 0.00 0.00 4.70
868 945 3.458163 CCGGCGACAAGGGAGCTA 61.458 66.667 9.30 0.00 0.00 3.32
869 946 2.577059 CGGCGACAAGGGAGCTAA 59.423 61.111 0.00 0.00 0.00 3.09
871 948 1.597461 GGCGACAAGGGAGCTAAGT 59.403 57.895 0.00 0.00 0.00 2.24
872 949 0.460459 GGCGACAAGGGAGCTAAGTC 60.460 60.000 0.00 0.00 0.00 3.01
873 950 3.330766 CGACAAGGGAGCTAAGTCG 57.669 57.895 10.15 10.15 44.64 4.18
876 953 0.608640 ACAAGGGAGCTAAGTCGGTG 59.391 55.000 0.00 0.00 0.00 4.94
877 954 0.741221 CAAGGGAGCTAAGTCGGTGC 60.741 60.000 0.00 0.00 0.00 5.01
878 955 1.192146 AAGGGAGCTAAGTCGGTGCA 61.192 55.000 0.00 0.00 0.00 4.57
879 956 1.448013 GGGAGCTAAGTCGGTGCAC 60.448 63.158 8.80 8.80 0.00 4.57
880 957 1.292223 GGAGCTAAGTCGGTGCACA 59.708 57.895 20.43 0.00 0.00 4.57
881 958 0.737715 GGAGCTAAGTCGGTGCACAG 60.738 60.000 20.43 15.76 0.00 3.66
894 971 2.807045 CACAGCGAGTGGAGCGAC 60.807 66.667 4.63 0.00 44.69 5.19
900 977 3.735029 GAGTGGAGCGACGGACGT 61.735 66.667 0.00 0.00 44.60 4.34
918 995 1.152830 TGACCAGGTTTGCCCTTCC 59.847 57.895 0.00 0.00 42.73 3.46
919 996 1.606601 GACCAGGTTTGCCCTTCCC 60.607 63.158 0.00 0.00 42.73 3.97
920 997 2.676471 CCAGGTTTGCCCTTCCCG 60.676 66.667 0.00 0.00 42.73 5.14
921 998 2.676471 CAGGTTTGCCCTTCCCGG 60.676 66.667 0.00 0.00 42.73 5.73
941 1021 2.483889 GGTTCATCGATCCCAACTCTCC 60.484 54.545 0.00 0.00 0.00 3.71
961 1041 5.359860 TCTCCAACTTGCTATCAATCTCGTA 59.640 40.000 0.00 0.00 0.00 3.43
973 1053 5.466432 TCAATCTCGTAACTGAGTAGACG 57.534 43.478 12.24 12.24 37.28 4.18
983 1064 2.422832 ACTGAGTAGACGGATTTCGACC 59.577 50.000 0.00 0.00 42.43 4.79
1026 1107 2.224079 GTCGTTCGCCGGTGTATCTATA 59.776 50.000 16.01 0.00 37.11 1.31
1083 2747 3.437795 GTCGAGACCCGCTCCGAA 61.438 66.667 0.00 0.00 40.70 4.30
1184 2851 3.078836 TTTCGGGGTAGGAGGCCG 61.079 66.667 0.00 0.00 0.00 6.13
1281 2966 1.300620 CGACGGCAGTGACAGGAAA 60.301 57.895 0.00 0.00 0.00 3.13
1301 2986 1.750399 ATGTGGATGCCAGGTTCGC 60.750 57.895 0.00 0.00 32.34 4.70
1320 3005 1.595794 GCTTTCAGTTTCGTCGACCAA 59.404 47.619 10.58 0.00 0.00 3.67
1682 3395 3.294493 GGCGCAACTCTTTGGCCA 61.294 61.111 10.83 0.00 43.39 5.36
1689 3424 2.836262 CAACTCTTTGGCCAAATGCAA 58.164 42.857 30.46 15.29 43.89 4.08
1713 3448 1.614317 GGCACTGTTATCCCTGCTGTT 60.614 52.381 0.00 0.00 0.00 3.16
1927 3671 3.627577 GGCTGACAAATATGACGTCCAAT 59.372 43.478 14.12 3.12 0.00 3.16
2287 4061 5.240623 TCATAATCCACGTGTCTTGCTTTTT 59.759 36.000 15.65 0.00 0.00 1.94
2288 4062 2.842208 TCCACGTGTCTTGCTTTTTG 57.158 45.000 15.65 0.00 0.00 2.44
2289 4063 2.088423 TCCACGTGTCTTGCTTTTTGT 58.912 42.857 15.65 0.00 0.00 2.83
2290 4064 2.096819 TCCACGTGTCTTGCTTTTTGTC 59.903 45.455 15.65 0.00 0.00 3.18
2291 4065 2.097466 CCACGTGTCTTGCTTTTTGTCT 59.903 45.455 15.65 0.00 0.00 3.41
2298 4072 5.684626 GTGTCTTGCTTTTTGTCTCATCAAG 59.315 40.000 0.00 0.00 0.00 3.02
2332 4106 6.660887 TTCTTGTTTGCCAAATCAGAAAAC 57.339 33.333 10.11 0.00 31.20 2.43
2334 4108 4.751767 TGTTTGCCAAATCAGAAAACCT 57.248 36.364 0.00 0.00 31.28 3.50
2374 4148 5.858381 TGTCTCTCCATGGAATATTGTAGC 58.142 41.667 17.00 0.41 0.00 3.58
2412 4186 6.127253 CCCAAGCTAATCATTTTGTCCTCATT 60.127 38.462 0.00 0.00 0.00 2.57
2433 4207 0.179081 GGCCACTACAATCTCGACCC 60.179 60.000 0.00 0.00 0.00 4.46
2434 4208 0.824759 GCCACTACAATCTCGACCCT 59.175 55.000 0.00 0.00 0.00 4.34
2461 4235 4.080863 AGTCATGTGGGGTTCTGTTCTATC 60.081 45.833 0.00 0.00 0.00 2.08
2509 4283 6.183360 TGTTTTCCCACGGTTTGATTGATTTA 60.183 34.615 0.00 0.00 0.00 1.40
2514 4288 5.416326 CCCACGGTTTGATTGATTTACCTTA 59.584 40.000 0.00 0.00 0.00 2.69
2617 4391 4.778842 CAAGTATTGCAGTCCATACGTC 57.221 45.455 0.00 0.00 40.39 4.34
2621 4395 5.488341 AGTATTGCAGTCCATACGTCTTTT 58.512 37.500 0.00 0.00 0.00 2.27
2623 4397 1.804151 TGCAGTCCATACGTCTTTTGC 59.196 47.619 0.00 0.00 0.00 3.68
2624 4398 2.076863 GCAGTCCATACGTCTTTTGCT 58.923 47.619 0.00 0.00 0.00 3.91
2625 4399 2.159653 GCAGTCCATACGTCTTTTGCTG 60.160 50.000 0.00 0.00 0.00 4.41
2641 4482 0.390472 GCTGGAGAGTCCCGTTCTTG 60.390 60.000 0.00 0.00 35.03 3.02
2681 4522 1.295423 GGTTAGGCGCTGGTCTTCA 59.705 57.895 7.64 0.00 0.00 3.02
2714 4555 2.282887 GGCCGGCCTTTTCCTTCA 60.283 61.111 38.76 0.00 0.00 3.02
2717 4558 1.470051 GCCGGCCTTTTCCTTCATTA 58.530 50.000 18.11 0.00 0.00 1.90
2720 4561 1.749063 CGGCCTTTTCCTTCATTACCC 59.251 52.381 0.00 0.00 0.00 3.69
2729 4570 2.094675 CCTTCATTACCCTGTTGGCTG 58.905 52.381 0.00 0.00 37.83 4.85
2734 4575 5.387113 TCATTACCCTGTTGGCTGATTAT 57.613 39.130 0.00 0.00 37.83 1.28
2745 4586 2.882761 TGGCTGATTATTGCATGCTCTC 59.117 45.455 20.33 8.65 0.00 3.20
2751 4592 3.386932 TTATTGCATGCTCTCCCCTTT 57.613 42.857 20.33 0.00 0.00 3.11
2770 4611 6.265422 CCCCTTTAGTTTTTGAGATGTCAACT 59.735 38.462 4.50 2.93 42.60 3.16
2771 4612 7.447238 CCCCTTTAGTTTTTGAGATGTCAACTA 59.553 37.037 4.50 1.93 42.60 2.24
2772 4613 9.014297 CCCTTTAGTTTTTGAGATGTCAACTAT 57.986 33.333 4.50 0.00 42.60 2.12
2809 4650 4.396166 TCAAGCTTTTTCATAGCCTAGTGC 59.604 41.667 0.00 0.00 39.47 4.40
2938 4783 6.829298 GTCTACTATATAGCCTCCACATGCTA 59.171 42.308 9.78 0.00 43.66 3.49
2945 4790 3.514539 AGCCTCCACATGCTAGATCATA 58.485 45.455 0.00 0.00 35.69 2.15
2958 4803 4.757149 GCTAGATCATATTCAAACGGGCTT 59.243 41.667 0.00 0.00 0.00 4.35
2978 4823 0.447801 GCGTCAGACATGCCGAATTT 59.552 50.000 0.41 0.00 26.42 1.82
3018 4863 3.270877 CCTAGTTTCCCGATTTCACTGG 58.729 50.000 0.00 0.00 0.00 4.00
3097 4942 3.591527 ACCCAACCCATGAACTCTCAATA 59.408 43.478 0.00 0.00 34.49 1.90
3118 4963 1.337118 TTTTCAAGGCCATGGACCAC 58.663 50.000 16.13 0.49 0.00 4.16
3125 4970 2.273449 CCATGGACCACCTGCTCC 59.727 66.667 5.56 0.00 37.04 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.281899 GCTTCTCACGGTACTGCATC 58.718 55.000 0.23 0.00 0.00 3.91
5 6 2.446341 GTGCTTCTCACGGTACTGC 58.554 57.895 0.23 0.00 35.76 4.40
20 21 2.029844 GGAGGAGACAGCGTTGTGC 61.030 63.158 10.50 1.14 46.98 4.57
22 23 0.034059 CAAGGAGGAGACAGCGTTGT 59.966 55.000 3.93 3.93 41.18 3.32
23 24 0.034059 ACAAGGAGGAGACAGCGTTG 59.966 55.000 0.00 0.00 38.15 4.10
24 25 0.034059 CACAAGGAGGAGACAGCGTT 59.966 55.000 0.00 0.00 0.00 4.84
25 26 0.827925 TCACAAGGAGGAGACAGCGT 60.828 55.000 0.00 0.00 0.00 5.07
26 27 0.389166 GTCACAAGGAGGAGACAGCG 60.389 60.000 0.00 0.00 0.00 5.18
27 28 0.036858 GGTCACAAGGAGGAGACAGC 60.037 60.000 0.00 0.00 32.79 4.40
29 30 1.816863 GCGGTCACAAGGAGGAGACA 61.817 60.000 0.00 0.00 32.79 3.41
30 31 1.079750 GCGGTCACAAGGAGGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
33 34 3.691342 CGGCGGTCACAAGGAGGA 61.691 66.667 0.00 0.00 0.00 3.71
34 35 3.234630 TTCGGCGGTCACAAGGAGG 62.235 63.158 7.21 0.00 0.00 4.30
36 37 2.154798 CTCTTCGGCGGTCACAAGGA 62.155 60.000 7.21 0.00 0.00 3.36
37 38 1.738099 CTCTTCGGCGGTCACAAGG 60.738 63.158 7.21 0.00 0.00 3.61
38 39 0.319555 TTCTCTTCGGCGGTCACAAG 60.320 55.000 7.21 2.59 0.00 3.16
40 41 1.289066 CTTCTCTTCGGCGGTCACA 59.711 57.895 7.21 0.00 0.00 3.58
41 42 1.446272 CCTTCTCTTCGGCGGTCAC 60.446 63.158 7.21 0.00 0.00 3.67
42 43 2.970639 CCTTCTCTTCGGCGGTCA 59.029 61.111 7.21 0.00 0.00 4.02
43 44 2.509561 GCCTTCTCTTCGGCGGTC 60.510 66.667 7.21 0.00 36.45 4.79
48 49 0.462759 GTGATGGGCCTTCTCTTCGG 60.463 60.000 19.03 0.00 0.00 4.30
49 50 0.462759 GGTGATGGGCCTTCTCTTCG 60.463 60.000 19.03 0.00 0.00 3.79
50 51 0.915364 AGGTGATGGGCCTTCTCTTC 59.085 55.000 19.03 5.55 31.04 2.87
51 52 2.122768 CTAGGTGATGGGCCTTCTCTT 58.877 52.381 19.03 14.38 37.54 2.85
52 53 1.694048 CCTAGGTGATGGGCCTTCTCT 60.694 57.143 19.03 17.13 37.54 3.10
53 54 0.761802 CCTAGGTGATGGGCCTTCTC 59.238 60.000 19.03 15.33 37.54 2.87
54 55 0.695803 CCCTAGGTGATGGGCCTTCT 60.696 60.000 19.03 3.29 37.54 2.85
55 56 1.839894 CCCTAGGTGATGGGCCTTC 59.160 63.158 12.30 12.30 37.54 3.46
56 57 4.089839 CCCTAGGTGATGGGCCTT 57.910 61.111 8.29 0.00 37.54 4.35
61 62 2.417516 CGTCGCCCTAGGTGATGG 59.582 66.667 8.29 0.00 44.40 3.51
62 63 2.417516 CCGTCGCCCTAGGTGATG 59.582 66.667 8.29 10.40 44.40 3.07
63 64 3.537874 GCCGTCGCCCTAGGTGAT 61.538 66.667 8.29 0.00 44.40 3.06
67 68 4.647615 CATCGCCGTCGCCCTAGG 62.648 72.222 0.06 0.06 35.26 3.02
68 69 4.647615 CCATCGCCGTCGCCCTAG 62.648 72.222 0.00 0.00 35.26 3.02
84 85 2.514824 GAGCGGTGGAATGGCTCC 60.515 66.667 0.00 0.00 45.67 4.70
109 110 2.969238 GTGCGCGAGATCCATGGG 60.969 66.667 12.10 0.00 0.00 4.00
110 111 2.202919 TGTGCGCGAGATCCATGG 60.203 61.111 12.10 4.97 0.00 3.66
111 112 0.807275 TTCTGTGCGCGAGATCCATG 60.807 55.000 12.10 0.00 0.00 3.66
112 113 0.529337 CTTCTGTGCGCGAGATCCAT 60.529 55.000 12.10 0.00 0.00 3.41
113 114 1.153765 CTTCTGTGCGCGAGATCCA 60.154 57.895 12.10 0.00 0.00 3.41
114 115 2.520904 GCTTCTGTGCGCGAGATCC 61.521 63.158 12.10 0.00 0.00 3.36
115 116 1.354337 TTGCTTCTGTGCGCGAGATC 61.354 55.000 12.10 6.07 35.36 2.75
117 118 2.023771 CTTGCTTCTGTGCGCGAGA 61.024 57.895 12.10 0.00 39.49 4.04
118 119 2.023771 TCTTGCTTCTGTGCGCGAG 61.024 57.895 12.10 0.00 38.68 5.03
119 120 2.028925 TCTTGCTTCTGTGCGCGA 59.971 55.556 12.10 0.00 35.36 5.87
121 122 2.253758 TGGTCTTGCTTCTGTGCGC 61.254 57.895 0.00 0.00 35.36 6.09
123 124 1.571460 CGTGGTCTTGCTTCTGTGC 59.429 57.895 0.00 0.00 0.00 4.57
124 125 0.249868 TCCGTGGTCTTGCTTCTGTG 60.250 55.000 0.00 0.00 0.00 3.66
126 127 1.813513 ATTCCGTGGTCTTGCTTCTG 58.186 50.000 0.00 0.00 0.00 3.02
127 128 2.678190 GCTATTCCGTGGTCTTGCTTCT 60.678 50.000 0.00 0.00 0.00 2.85
128 129 1.666189 GCTATTCCGTGGTCTTGCTTC 59.334 52.381 0.00 0.00 0.00 3.86
129 130 1.739067 GCTATTCCGTGGTCTTGCTT 58.261 50.000 0.00 0.00 0.00 3.91
130 131 0.460284 CGCTATTCCGTGGTCTTGCT 60.460 55.000 0.00 0.00 0.00 3.91
131 132 0.459585 TCGCTATTCCGTGGTCTTGC 60.460 55.000 0.00 0.00 0.00 4.01
133 134 1.806623 GCATCGCTATTCCGTGGTCTT 60.807 52.381 0.00 0.00 0.00 3.01
134 135 0.249489 GCATCGCTATTCCGTGGTCT 60.249 55.000 0.00 0.00 0.00 3.85
136 137 1.591594 CGCATCGCTATTCCGTGGT 60.592 57.895 0.00 0.00 0.00 4.16
138 139 2.943345 GCCGCATCGCTATTCCGTG 61.943 63.158 0.00 0.00 0.00 4.94
139 140 2.661866 GCCGCATCGCTATTCCGT 60.662 61.111 0.00 0.00 0.00 4.69
140 141 3.767230 CGCCGCATCGCTATTCCG 61.767 66.667 0.00 0.00 0.00 4.30
141 142 2.658707 GACGCCGCATCGCTATTCC 61.659 63.158 0.00 0.00 0.00 3.01
142 143 2.846918 GACGCCGCATCGCTATTC 59.153 61.111 0.00 0.00 0.00 1.75
143 144 3.030308 CGACGCCGCATCGCTATT 61.030 61.111 0.00 0.00 31.96 1.73
154 155 3.839432 CTCTTCCCCTCCGACGCC 61.839 72.222 0.00 0.00 0.00 5.68
155 156 4.516195 GCTCTTCCCCTCCGACGC 62.516 72.222 0.00 0.00 0.00 5.19
156 157 3.068691 TGCTCTTCCCCTCCGACG 61.069 66.667 0.00 0.00 0.00 5.12
157 158 2.896443 CTGCTCTTCCCCTCCGAC 59.104 66.667 0.00 0.00 0.00 4.79
158 159 3.077556 GCTGCTCTTCCCCTCCGA 61.078 66.667 0.00 0.00 0.00 4.55
160 161 2.690510 AGGCTGCTCTTCCCCTCC 60.691 66.667 0.00 0.00 0.00 4.30
161 162 2.588989 CAGGCTGCTCTTCCCCTC 59.411 66.667 0.00 0.00 0.00 4.30
162 163 3.726144 GCAGGCTGCTCTTCCCCT 61.726 66.667 31.37 0.00 40.96 4.79
184 185 4.720902 TCTGCCACCACCGCCATG 62.721 66.667 0.00 0.00 0.00 3.66
185 186 3.704231 GATCTGCCACCACCGCCAT 62.704 63.158 0.00 0.00 0.00 4.40
188 189 2.821366 CTGATCTGCCACCACCGC 60.821 66.667 0.00 0.00 0.00 5.68
189 190 2.821366 GCTGATCTGCCACCACCG 60.821 66.667 13.26 0.00 0.00 4.94
191 192 1.302752 TGTGCTGATCTGCCACCAC 60.303 57.895 20.39 12.70 0.00 4.16
192 193 1.002990 CTGTGCTGATCTGCCACCA 60.003 57.895 20.39 13.37 0.00 4.17
193 194 1.002868 ACTGTGCTGATCTGCCACC 60.003 57.895 20.39 9.87 0.00 4.61
194 195 1.303799 CCACTGTGCTGATCTGCCAC 61.304 60.000 20.39 17.43 0.00 5.01
196 197 0.743701 CTCCACTGTGCTGATCTGCC 60.744 60.000 20.39 12.68 0.00 4.85
197 198 0.743701 CCTCCACTGTGCTGATCTGC 60.744 60.000 16.98 16.98 0.00 4.26
198 199 0.900421 TCCTCCACTGTGCTGATCTG 59.100 55.000 1.29 0.00 0.00 2.90
199 200 1.193323 CTCCTCCACTGTGCTGATCT 58.807 55.000 1.29 0.00 0.00 2.75
200 201 0.177604 CCTCCTCCACTGTGCTGATC 59.822 60.000 1.29 0.00 0.00 2.92
201 202 0.546267 ACCTCCTCCACTGTGCTGAT 60.546 55.000 1.29 0.00 0.00 2.90
202 203 1.152247 ACCTCCTCCACTGTGCTGA 60.152 57.895 1.29 0.00 0.00 4.26
203 204 1.004080 CACCTCCTCCACTGTGCTG 60.004 63.158 1.29 0.00 0.00 4.41
204 205 2.219875 CCACCTCCTCCACTGTGCT 61.220 63.158 1.29 0.00 0.00 4.40
205 206 2.348998 CCACCTCCTCCACTGTGC 59.651 66.667 1.29 0.00 0.00 4.57
206 207 1.372683 CACCACCTCCTCCACTGTG 59.627 63.158 0.00 0.00 0.00 3.66
207 208 1.074471 ACACCACCTCCTCCACTGT 60.074 57.895 0.00 0.00 0.00 3.55
208 209 1.372683 CACACCACCTCCTCCACTG 59.627 63.158 0.00 0.00 0.00 3.66
209 210 1.074471 ACACACCACCTCCTCCACT 60.074 57.895 0.00 0.00 0.00 4.00
210 211 1.071471 CACACACCACCTCCTCCAC 59.929 63.158 0.00 0.00 0.00 4.02
211 212 2.818169 GCACACACCACCTCCTCCA 61.818 63.158 0.00 0.00 0.00 3.86
212 213 2.032681 GCACACACCACCTCCTCC 59.967 66.667 0.00 0.00 0.00 4.30
215 216 0.465460 TTCAAGCACACACCACCTCC 60.465 55.000 0.00 0.00 0.00 4.30
216 217 0.947244 CTTCAAGCACACACCACCTC 59.053 55.000 0.00 0.00 0.00 3.85
217 218 1.103398 GCTTCAAGCACACACCACCT 61.103 55.000 3.89 0.00 41.89 4.00
218 219 1.360192 GCTTCAAGCACACACCACC 59.640 57.895 3.89 0.00 41.89 4.61
228 229 1.030457 CATCCATCCCTGCTTCAAGC 58.970 55.000 1.04 1.04 42.82 4.01
230 231 2.199208 TCTCATCCATCCCTGCTTCAA 58.801 47.619 0.00 0.00 0.00 2.69
232 233 2.848691 CTTCTCATCCATCCCTGCTTC 58.151 52.381 0.00 0.00 0.00 3.86
233 234 1.133853 GCTTCTCATCCATCCCTGCTT 60.134 52.381 0.00 0.00 0.00 3.91
234 235 0.473326 GCTTCTCATCCATCCCTGCT 59.527 55.000 0.00 0.00 0.00 4.24
236 237 0.841961 TGGCTTCTCATCCATCCCTG 59.158 55.000 0.00 0.00 0.00 4.45
237 238 1.424302 CATGGCTTCTCATCCATCCCT 59.576 52.381 0.00 0.00 40.88 4.20
238 239 1.547223 CCATGGCTTCTCATCCATCCC 60.547 57.143 0.00 0.00 40.88 3.85
239 240 1.906990 CCATGGCTTCTCATCCATCC 58.093 55.000 0.00 0.00 40.88 3.51
240 241 1.245732 GCCATGGCTTCTCATCCATC 58.754 55.000 29.98 0.00 40.88 3.51
241 242 0.536687 CGCCATGGCTTCTCATCCAT 60.537 55.000 33.07 0.00 43.45 3.41
242 243 1.153107 CGCCATGGCTTCTCATCCA 60.153 57.895 33.07 0.00 39.32 3.41
243 244 0.250640 ATCGCCATGGCTTCTCATCC 60.251 55.000 33.07 2.52 39.32 3.51
245 246 0.471191 TCATCGCCATGGCTTCTCAT 59.529 50.000 33.07 14.45 39.32 2.90
246 247 0.471191 ATCATCGCCATGGCTTCTCA 59.529 50.000 33.07 14.23 39.32 3.27
247 248 0.873054 CATCATCGCCATGGCTTCTC 59.127 55.000 33.07 5.66 39.32 2.87
248 249 0.536687 CCATCATCGCCATGGCTTCT 60.537 55.000 33.07 15.34 39.32 2.85
250 251 4.169271 CCATCATCGCCATGGCTT 57.831 55.556 33.07 18.49 39.32 4.35
253 254 1.385756 TTGTGCCATCATCGCCATGG 61.386 55.000 7.63 7.63 43.47 3.66
254 255 0.030235 CTTGTGCCATCATCGCCATG 59.970 55.000 0.00 0.00 0.00 3.66
256 257 2.409055 GCTTGTGCCATCATCGCCA 61.409 57.895 0.00 0.00 0.00 5.69
257 258 2.410469 GCTTGTGCCATCATCGCC 59.590 61.111 0.00 0.00 0.00 5.54
258 259 2.023741 CGCTTGTGCCATCATCGC 59.976 61.111 0.00 0.00 35.36 4.58
259 260 2.023741 GCGCTTGTGCCATCATCG 59.976 61.111 0.00 0.00 35.36 3.84
267 268 3.741476 CAGGAAGGGCGCTTGTGC 61.741 66.667 22.05 6.45 0.00 4.57
270 271 2.956987 CAACAGGAAGGGCGCTTG 59.043 61.111 22.05 10.13 0.00 4.01
271 272 2.124507 TAGCAACAGGAAGGGCGCTT 62.125 55.000 16.91 16.91 0.00 4.68
272 273 1.915078 ATAGCAACAGGAAGGGCGCT 61.915 55.000 7.64 0.00 0.00 5.92
273 274 1.440145 GATAGCAACAGGAAGGGCGC 61.440 60.000 0.00 0.00 0.00 6.53
274 275 0.107703 TGATAGCAACAGGAAGGGCG 60.108 55.000 0.00 0.00 0.00 6.13
275 276 1.383523 GTGATAGCAACAGGAAGGGC 58.616 55.000 0.00 0.00 0.00 5.19
276 277 1.743772 CGGTGATAGCAACAGGAAGGG 60.744 57.143 0.00 0.00 0.00 3.95
277 278 1.656652 CGGTGATAGCAACAGGAAGG 58.343 55.000 0.00 0.00 0.00 3.46
278 279 1.656652 CCGGTGATAGCAACAGGAAG 58.343 55.000 0.00 0.00 30.28 3.46
280 281 0.907704 ACCCGGTGATAGCAACAGGA 60.908 55.000 5.02 0.00 32.76 3.86
283 284 2.062922 ACACCCGGTGATAGCAACA 58.937 52.632 24.80 0.00 36.96 3.33
293 294 0.467290 AGCAACAATTCACACCCGGT 60.467 50.000 0.00 0.00 0.00 5.28
295 296 0.039256 CCAGCAACAATTCACACCCG 60.039 55.000 0.00 0.00 0.00 5.28
296 297 0.318120 CCCAGCAACAATTCACACCC 59.682 55.000 0.00 0.00 0.00 4.61
297 298 1.270550 CTCCCAGCAACAATTCACACC 59.729 52.381 0.00 0.00 0.00 4.16
298 299 1.956477 ACTCCCAGCAACAATTCACAC 59.044 47.619 0.00 0.00 0.00 3.82
299 300 2.363306 ACTCCCAGCAACAATTCACA 57.637 45.000 0.00 0.00 0.00 3.58
300 301 4.846779 TTTACTCCCAGCAACAATTCAC 57.153 40.909 0.00 0.00 0.00 3.18
301 302 4.261994 GCTTTTACTCCCAGCAACAATTCA 60.262 41.667 0.00 0.00 33.45 2.57
302 303 4.237724 GCTTTTACTCCCAGCAACAATTC 58.762 43.478 0.00 0.00 33.45 2.17
303 304 3.006859 GGCTTTTACTCCCAGCAACAATT 59.993 43.478 0.00 0.00 35.05 2.32
304 305 2.562738 GGCTTTTACTCCCAGCAACAAT 59.437 45.455 0.00 0.00 35.05 2.71
305 306 1.960689 GGCTTTTACTCCCAGCAACAA 59.039 47.619 0.00 0.00 35.05 2.83
307 308 1.616159 TGGCTTTTACTCCCAGCAAC 58.384 50.000 0.00 0.00 35.05 4.17
308 309 2.158534 TCTTGGCTTTTACTCCCAGCAA 60.159 45.455 0.00 0.00 35.05 3.91
309 310 1.423541 TCTTGGCTTTTACTCCCAGCA 59.576 47.619 0.00 0.00 35.05 4.41
311 312 2.087646 GCTCTTGGCTTTTACTCCCAG 58.912 52.381 0.00 0.00 38.06 4.45
312 313 1.423541 TGCTCTTGGCTTTTACTCCCA 59.576 47.619 0.00 0.00 42.39 4.37
313 314 2.200373 TGCTCTTGGCTTTTACTCCC 57.800 50.000 0.00 0.00 42.39 4.30
314 315 3.149981 ACTTGCTCTTGGCTTTTACTCC 58.850 45.455 0.00 0.00 42.39 3.85
315 316 3.815401 TGACTTGCTCTTGGCTTTTACTC 59.185 43.478 0.00 0.00 42.39 2.59
316 317 3.820557 TGACTTGCTCTTGGCTTTTACT 58.179 40.909 0.00 0.00 42.39 2.24
317 318 4.568152 TTGACTTGCTCTTGGCTTTTAC 57.432 40.909 0.00 0.00 42.39 2.01
320 321 3.290710 TCTTTGACTTGCTCTTGGCTTT 58.709 40.909 0.00 0.00 42.39 3.51
321 322 2.883386 CTCTTTGACTTGCTCTTGGCTT 59.117 45.455 0.00 0.00 42.39 4.35
323 324 1.538950 CCTCTTTGACTTGCTCTTGGC 59.461 52.381 0.00 0.00 42.22 4.52
324 325 3.072944 CTCCTCTTTGACTTGCTCTTGG 58.927 50.000 0.00 0.00 0.00 3.61
325 326 3.497640 CACTCCTCTTTGACTTGCTCTTG 59.502 47.826 0.00 0.00 0.00 3.02
327 328 2.968574 TCACTCCTCTTTGACTTGCTCT 59.031 45.455 0.00 0.00 0.00 4.09
378 417 4.558538 ATTAGGATGCAGATTTCGTTGC 57.441 40.909 0.00 0.00 40.67 4.17
405 444 1.375908 GACAGCCGTCTGATTGCCA 60.376 57.895 0.00 0.00 42.95 4.92
418 458 4.702826 GCGCAACGTGACGACAGC 62.703 66.667 13.70 11.35 0.00 4.40
426 466 2.252127 AATGATTCCGGCGCAACGTG 62.252 55.000 10.83 0.00 0.00 4.49
427 467 1.977594 GAATGATTCCGGCGCAACGT 61.978 55.000 10.83 0.00 0.00 3.99
454 494 3.606846 CGAAAATGTTGTGCATCTGACGT 60.607 43.478 0.00 0.00 36.67 4.34
466 506 9.312146 GCACCAAATTAATTAACGAAAATGTTG 57.688 29.630 0.01 0.00 33.32 3.33
513 587 8.919777 AGGCAAAACTTATCTGTAGTAACTTT 57.080 30.769 0.00 0.00 0.00 2.66
559 636 9.482627 TTGCACACGATGATTGTATGTATTATA 57.517 29.630 0.00 0.00 0.00 0.98
562 639 6.676237 TTGCACACGATGATTGTATGTATT 57.324 33.333 0.00 0.00 0.00 1.89
563 640 6.866010 ATTGCACACGATGATTGTATGTAT 57.134 33.333 0.00 0.00 0.00 2.29
565 642 5.565592 AATTGCACACGATGATTGTATGT 57.434 34.783 0.00 0.00 0.00 2.29
566 643 5.230516 CCAAATTGCACACGATGATTGTATG 59.769 40.000 0.00 0.00 0.00 2.39
574 651 1.342555 CTGCCAAATTGCACACGATG 58.657 50.000 0.00 0.00 36.04 3.84
576 653 1.007502 GCTGCCAAATTGCACACGA 60.008 52.632 0.00 0.00 36.04 4.35
578 655 0.863144 CAAGCTGCCAAATTGCACAC 59.137 50.000 0.00 0.00 36.04 3.82
612 689 0.249322 CACGGACGAGGACACAAAGT 60.249 55.000 0.00 0.00 0.00 2.66
614 691 0.176219 AACACGGACGAGGACACAAA 59.824 50.000 0.00 0.00 0.00 2.83
615 692 1.001048 CTAACACGGACGAGGACACAA 60.001 52.381 0.00 0.00 0.00 3.33
616 693 0.594602 CTAACACGGACGAGGACACA 59.405 55.000 0.00 0.00 0.00 3.72
619 696 1.163554 ACTCTAACACGGACGAGGAC 58.836 55.000 0.00 0.00 0.00 3.85
621 698 3.005554 TCTAACTCTAACACGGACGAGG 58.994 50.000 0.00 0.00 0.00 4.63
622 699 3.931468 TCTCTAACTCTAACACGGACGAG 59.069 47.826 0.00 0.00 0.00 4.18
624 701 4.879104 ATCTCTAACTCTAACACGGACG 57.121 45.455 0.00 0.00 0.00 4.79
626 703 5.258841 TCCAATCTCTAACTCTAACACGGA 58.741 41.667 0.00 0.00 0.00 4.69
627 704 5.125739 ACTCCAATCTCTAACTCTAACACGG 59.874 44.000 0.00 0.00 0.00 4.94
628 705 6.197364 ACTCCAATCTCTAACTCTAACACG 57.803 41.667 0.00 0.00 0.00 4.49
629 706 7.556996 TCCTACTCCAATCTCTAACTCTAACAC 59.443 40.741 0.00 0.00 0.00 3.32
630 707 7.640313 TCCTACTCCAATCTCTAACTCTAACA 58.360 38.462 0.00 0.00 0.00 2.41
631 708 8.522542 TTCCTACTCCAATCTCTAACTCTAAC 57.477 38.462 0.00 0.00 0.00 2.34
634 711 8.507761 ACTATTCCTACTCCAATCTCTAACTCT 58.492 37.037 0.00 0.00 0.00 3.24
635 712 8.700439 ACTATTCCTACTCCAATCTCTAACTC 57.300 38.462 0.00 0.00 0.00 3.01
636 713 9.802039 CTACTATTCCTACTCCAATCTCTAACT 57.198 37.037 0.00 0.00 0.00 2.24
729 806 1.536331 ACGTTTGTTTGTCACGGTTGT 59.464 42.857 0.00 0.00 0.00 3.32
750 827 9.237846 GTTGCAAGCCTATGTATTAAAATTCTC 57.762 33.333 0.00 0.00 0.00 2.87
751 828 8.748412 TGTTGCAAGCCTATGTATTAAAATTCT 58.252 29.630 0.00 0.00 0.00 2.40
752 829 8.925161 TGTTGCAAGCCTATGTATTAAAATTC 57.075 30.769 0.00 0.00 0.00 2.17
754 831 8.310382 TGTTGTTGCAAGCCTATGTATTAAAAT 58.690 29.630 0.00 0.00 0.00 1.82
755 832 7.661968 TGTTGTTGCAAGCCTATGTATTAAAA 58.338 30.769 0.00 0.00 0.00 1.52
757 834 6.825944 TGTTGTTGCAAGCCTATGTATTAA 57.174 33.333 0.00 0.00 0.00 1.40
759 836 5.469479 GTTGTTGTTGCAAGCCTATGTATT 58.531 37.500 0.00 0.00 0.00 1.89
760 837 4.082245 GGTTGTTGTTGCAAGCCTATGTAT 60.082 41.667 0.00 0.00 39.96 2.29
761 838 3.254657 GGTTGTTGTTGCAAGCCTATGTA 59.745 43.478 0.00 0.00 39.96 2.29
762 839 2.035832 GGTTGTTGTTGCAAGCCTATGT 59.964 45.455 0.00 0.00 39.96 2.29
764 841 1.269448 CGGTTGTTGTTGCAAGCCTAT 59.731 47.619 0.00 0.00 42.03 2.57
766 843 1.319614 ACGGTTGTTGTTGCAAGCCT 61.320 50.000 0.00 0.00 42.03 4.58
767 844 1.140804 ACGGTTGTTGTTGCAAGCC 59.859 52.632 0.00 0.00 42.03 4.35
769 846 1.135546 TGTCACGGTTGTTGTTGCAAG 60.136 47.619 0.00 0.00 0.00 4.01
772 849 1.651631 GTTTGTCACGGTTGTTGTTGC 59.348 47.619 0.00 0.00 0.00 4.17
773 850 2.935042 TGTTTGTCACGGTTGTTGTTG 58.065 42.857 0.00 0.00 0.00 3.33
774 851 3.644884 TTGTTTGTCACGGTTGTTGTT 57.355 38.095 0.00 0.00 0.00 2.83
775 852 3.310246 GTTTGTTTGTCACGGTTGTTGT 58.690 40.909 0.00 0.00 0.00 3.32
777 854 2.586900 CGTTTGTTTGTCACGGTTGTT 58.413 42.857 0.00 0.00 0.00 2.83
778 855 1.729797 GCGTTTGTTTGTCACGGTTGT 60.730 47.619 0.00 0.00 0.00 3.32
781 858 1.061253 CGCGTTTGTTTGTCACGGT 59.939 52.632 0.00 0.00 0.00 4.83
782 859 0.653323 CTCGCGTTTGTTTGTCACGG 60.653 55.000 5.77 0.00 0.00 4.94
783 860 0.299300 TCTCGCGTTTGTTTGTCACG 59.701 50.000 5.77 0.00 0.00 4.35
784 861 2.445453 TTCTCGCGTTTGTTTGTCAC 57.555 45.000 5.77 0.00 0.00 3.67
786 863 5.180377 CAAAAATTCTCGCGTTTGTTTGTC 58.820 37.500 5.77 0.00 0.00 3.18
787 864 4.032331 CCAAAAATTCTCGCGTTTGTTTGT 59.968 37.500 5.77 0.00 30.61 2.83
788 865 4.266502 TCCAAAAATTCTCGCGTTTGTTTG 59.733 37.500 5.77 10.31 30.61 2.93
789 866 4.425520 TCCAAAAATTCTCGCGTTTGTTT 58.574 34.783 5.77 1.15 30.61 2.83
790 867 4.035278 TCCAAAAATTCTCGCGTTTGTT 57.965 36.364 5.77 0.00 30.61 2.83
791 868 3.701532 TCCAAAAATTCTCGCGTTTGT 57.298 38.095 5.77 0.00 30.61 2.83
793 870 4.497473 TGATCCAAAAATTCTCGCGTTT 57.503 36.364 5.77 0.00 0.00 3.60
794 871 4.226761 GTTGATCCAAAAATTCTCGCGTT 58.773 39.130 5.77 0.00 0.00 4.84
795 872 3.252215 TGTTGATCCAAAAATTCTCGCGT 59.748 39.130 5.77 0.00 0.00 6.01
796 873 3.820689 TGTTGATCCAAAAATTCTCGCG 58.179 40.909 0.00 0.00 0.00 5.87
797 874 5.222631 AGTTGTTGATCCAAAAATTCTCGC 58.777 37.500 0.00 0.00 0.00 5.03
798 875 6.801862 GGTAGTTGTTGATCCAAAAATTCTCG 59.198 38.462 0.00 0.00 0.00 4.04
827 904 2.869503 ATAGAGGGTTTGCACCGGCG 62.870 60.000 0.00 0.00 45.39 6.46
829 906 0.035439 ACATAGAGGGTTTGCACCGG 60.035 55.000 0.00 0.00 45.39 5.28
830 907 1.821216 AACATAGAGGGTTTGCACCG 58.179 50.000 0.00 0.00 45.39 4.94
831 908 2.492088 GGAAACATAGAGGGTTTGCACC 59.508 50.000 4.93 0.00 43.41 5.01
832 909 2.161609 CGGAAACATAGAGGGTTTGCAC 59.838 50.000 9.54 0.00 43.92 4.57
835 912 1.743394 GCCGGAAACATAGAGGGTTTG 59.257 52.381 5.05 0.00 38.50 2.93
836 913 1.677820 CGCCGGAAACATAGAGGGTTT 60.678 52.381 5.05 0.00 40.91 3.27
837 914 0.107848 CGCCGGAAACATAGAGGGTT 60.108 55.000 5.05 0.00 0.00 4.11
839 916 0.529992 GTCGCCGGAAACATAGAGGG 60.530 60.000 5.05 0.00 0.00 4.30
840 917 0.174845 TGTCGCCGGAAACATAGAGG 59.825 55.000 5.05 0.00 0.00 3.69
842 919 1.404986 CCTTGTCGCCGGAAACATAGA 60.405 52.381 5.05 0.00 0.00 1.98
843 920 1.006832 CCTTGTCGCCGGAAACATAG 58.993 55.000 5.05 8.44 0.00 2.23
844 921 0.391927 CCCTTGTCGCCGGAAACATA 60.392 55.000 5.05 0.00 0.00 2.29
846 923 2.281208 CCCTTGTCGCCGGAAACA 60.281 61.111 5.05 5.22 0.00 2.83
847 924 2.031465 TCCCTTGTCGCCGGAAAC 59.969 61.111 5.05 1.86 0.00 2.78
848 925 2.345991 CTCCCTTGTCGCCGGAAA 59.654 61.111 5.05 0.00 0.00 3.13
850 927 3.949885 TAGCTCCCTTGTCGCCGGA 62.950 63.158 5.05 0.00 0.00 5.14
851 928 2.907897 CTTAGCTCCCTTGTCGCCGG 62.908 65.000 0.00 0.00 0.00 6.13
852 929 1.519455 CTTAGCTCCCTTGTCGCCG 60.519 63.158 0.00 0.00 0.00 6.46
853 930 0.460459 GACTTAGCTCCCTTGTCGCC 60.460 60.000 0.00 0.00 0.00 5.54
855 932 0.179134 CCGACTTAGCTCCCTTGTCG 60.179 60.000 15.18 15.18 41.78 4.35
856 933 0.896226 ACCGACTTAGCTCCCTTGTC 59.104 55.000 0.00 0.00 0.00 3.18
858 935 0.741221 GCACCGACTTAGCTCCCTTG 60.741 60.000 0.00 0.00 0.00 3.61
859 936 1.192146 TGCACCGACTTAGCTCCCTT 61.192 55.000 0.00 0.00 0.00 3.95
860 937 1.609501 TGCACCGACTTAGCTCCCT 60.610 57.895 0.00 0.00 0.00 4.20
861 938 1.448013 GTGCACCGACTTAGCTCCC 60.448 63.158 5.22 0.00 0.00 4.30
862 939 0.737715 CTGTGCACCGACTTAGCTCC 60.738 60.000 15.69 0.00 0.00 4.70
864 941 1.374758 GCTGTGCACCGACTTAGCT 60.375 57.895 15.69 0.00 0.00 3.32
865 942 2.730672 CGCTGTGCACCGACTTAGC 61.731 63.158 15.69 14.18 0.00 3.09
866 943 1.073216 CTCGCTGTGCACCGACTTAG 61.073 60.000 15.69 4.70 0.00 2.18
867 944 1.080772 CTCGCTGTGCACCGACTTA 60.081 57.895 15.69 0.00 0.00 2.24
868 945 2.356313 CTCGCTGTGCACCGACTT 60.356 61.111 15.69 0.00 0.00 3.01
869 946 3.606662 ACTCGCTGTGCACCGACT 61.607 61.111 15.69 3.23 0.00 4.18
871 948 4.662961 CCACTCGCTGTGCACCGA 62.663 66.667 15.69 15.75 44.92 4.69
872 949 4.662961 TCCACTCGCTGTGCACCG 62.663 66.667 15.69 11.92 44.92 4.94
873 950 2.740055 CTCCACTCGCTGTGCACC 60.740 66.667 15.69 0.00 44.92 5.01
876 953 4.724602 TCGCTCCACTCGCTGTGC 62.725 66.667 3.37 0.00 44.92 4.57
877 954 2.807045 GTCGCTCCACTCGCTGTG 60.807 66.667 2.10 2.10 45.80 3.66
878 955 4.406173 CGTCGCTCCACTCGCTGT 62.406 66.667 0.00 0.00 0.00 4.40
883 960 3.735029 ACGTCCGTCGCTCCACTC 61.735 66.667 0.00 0.00 44.19 3.51
884 961 4.039357 CACGTCCGTCGCTCCACT 62.039 66.667 0.00 0.00 44.19 4.00
885 962 4.034258 TCACGTCCGTCGCTCCAC 62.034 66.667 0.00 0.00 44.19 4.02
886 963 4.034258 GTCACGTCCGTCGCTCCA 62.034 66.667 0.00 0.00 44.19 3.86
888 965 3.948086 CTGGTCACGTCCGTCGCTC 62.948 68.421 0.00 0.00 44.19 5.03
889 966 4.039357 CTGGTCACGTCCGTCGCT 62.039 66.667 0.00 0.00 44.19 4.93
891 968 2.688526 AAACCTGGTCACGTCCGTCG 62.689 60.000 0.00 0.00 46.00 5.12
892 969 1.068585 AAACCTGGTCACGTCCGTC 59.931 57.895 0.00 0.00 0.00 4.79
893 970 1.227438 CAAACCTGGTCACGTCCGT 60.227 57.895 0.00 0.00 0.00 4.69
894 971 2.604174 GCAAACCTGGTCACGTCCG 61.604 63.158 0.00 0.00 0.00 4.79
915 992 0.978667 TGGGATCGATGAACCGGGAA 60.979 55.000 6.32 0.00 0.00 3.97
918 995 0.178068 AGTTGGGATCGATGAACCGG 59.822 55.000 0.54 0.00 0.00 5.28
919 996 1.137086 AGAGTTGGGATCGATGAACCG 59.863 52.381 0.54 0.00 0.00 4.44
920 997 2.483889 GGAGAGTTGGGATCGATGAACC 60.484 54.545 0.54 2.75 0.00 3.62
921 998 2.168521 TGGAGAGTTGGGATCGATGAAC 59.831 50.000 0.54 2.97 0.00 3.18
941 1021 6.531594 TCAGTTACGAGATTGATAGCAAGTTG 59.468 38.462 0.00 0.00 37.45 3.16
961 1041 3.119566 GGTCGAAATCCGTCTACTCAGTT 60.120 47.826 0.00 0.00 39.75 3.16
983 1064 1.676529 ACATGATGGACCTACGAGTCG 59.323 52.381 11.85 11.85 37.66 4.18
1026 1107 0.110486 ACAACTTGCCGTCCTCCAAT 59.890 50.000 0.00 0.00 0.00 3.16
1083 2747 2.602676 AAGCAGGTGGTACCCGCAT 61.603 57.895 10.07 0.00 44.03 4.73
1184 2851 5.465724 GGATAATACTTGATGGACCAACGAC 59.534 44.000 0.00 0.00 0.00 4.34
1270 2949 3.415212 CATCCACATGTTTCCTGTCACT 58.585 45.455 0.00 0.00 0.00 3.41
1281 2966 0.677731 CGAACCTGGCATCCACATGT 60.678 55.000 0.00 0.00 31.86 3.21
1301 2986 2.864343 ACTTGGTCGACGAAACTGAAAG 59.136 45.455 14.13 3.29 42.29 2.62
1320 3005 1.771255 ACTGGGTTCTGCTTCTCAACT 59.229 47.619 0.00 0.00 0.00 3.16
1540 3253 2.433604 TGTTGAAATGGTGGTGCATGTT 59.566 40.909 0.00 0.00 0.00 2.71
1682 3395 1.708341 AACAGTGCCCTCTTGCATTT 58.292 45.000 0.00 0.00 44.30 2.32
1713 3448 6.888105 TGCTTCCATGTCTTCAATCTGTATA 58.112 36.000 0.00 0.00 0.00 1.47
2324 4098 4.018506 TGCCCATCTATTGAGGTTTTCTGA 60.019 41.667 0.00 0.00 0.00 3.27
2332 4106 4.891756 AGACAATTTGCCCATCTATTGAGG 59.108 41.667 0.00 0.00 33.39 3.86
2334 4108 5.759059 AGAGACAATTTGCCCATCTATTGA 58.241 37.500 0.00 0.00 33.39 2.57
2374 4148 2.594303 TTGGGAGCTTGCACACCG 60.594 61.111 0.00 0.00 0.00 4.94
2385 4159 4.952335 AGGACAAAATGATTAGCTTGGGAG 59.048 41.667 0.00 0.00 0.00 4.30
2412 4186 1.066430 GGTCGAGATTGTAGTGGCCAA 60.066 52.381 7.24 0.00 0.00 4.52
2433 4207 3.244561 ACAGAACCCCACATGACTACAAG 60.245 47.826 0.00 0.00 0.00 3.16
2434 4208 2.708861 ACAGAACCCCACATGACTACAA 59.291 45.455 0.00 0.00 0.00 2.41
2461 4235 4.010349 AGAAAATCTAAGTGGGGAAAGCG 58.990 43.478 0.00 0.00 0.00 4.68
2509 4283 4.627015 TGGACCACCAGTGTATATAAGGT 58.373 43.478 0.00 0.00 41.77 3.50
2605 4379 2.416547 CCAGCAAAAGACGTATGGACTG 59.583 50.000 0.00 0.00 0.00 3.51
2617 4391 0.035458 ACGGGACTCTCCAGCAAAAG 59.965 55.000 0.00 0.00 38.64 2.27
2621 4395 0.832135 AAGAACGGGACTCTCCAGCA 60.832 55.000 0.00 0.00 38.64 4.41
2623 4397 0.247736 CCAAGAACGGGACTCTCCAG 59.752 60.000 0.00 0.00 38.64 3.86
2624 4398 0.471211 ACCAAGAACGGGACTCTCCA 60.471 55.000 0.00 0.00 38.64 3.86
2625 4399 0.685660 AACCAAGAACGGGACTCTCC 59.314 55.000 0.00 0.00 35.23 3.71
2671 4512 1.138661 CTCCCAGATCTGAAGACCAGC 59.861 57.143 24.62 0.00 42.62 4.85
2681 4522 1.059006 GGCCATGGTCTCCCAGATCT 61.059 60.000 14.67 0.00 46.15 2.75
2714 4555 4.342092 GCAATAATCAGCCAACAGGGTAAT 59.658 41.667 0.00 0.00 39.65 1.89
2717 4558 2.102578 GCAATAATCAGCCAACAGGGT 58.897 47.619 0.00 0.00 39.65 4.34
2720 4561 3.120792 GCATGCAATAATCAGCCAACAG 58.879 45.455 14.21 0.00 0.00 3.16
2729 4570 3.151912 AGGGGAGAGCATGCAATAATC 57.848 47.619 21.98 8.20 0.00 1.75
2734 4575 1.635487 ACTAAAGGGGAGAGCATGCAA 59.365 47.619 21.98 0.00 0.00 4.08
2745 4586 6.265422 AGTTGACATCTCAAAAACTAAAGGGG 59.735 38.462 0.00 0.00 38.17 4.79
2809 4650 0.248580 ATGTGCGTGCATAAATGGCG 60.249 50.000 0.00 0.00 0.00 5.69
2938 4783 3.316308 GCAAGCCCGTTTGAATATGATCT 59.684 43.478 0.00 0.00 0.00 2.75
2945 4790 1.169661 TGACGCAAGCCCGTTTGAAT 61.170 50.000 0.00 0.00 42.24 2.57
2994 4839 3.773119 AGTGAAATCGGGAAACTAGGCTA 59.227 43.478 0.00 0.00 0.00 3.93
3018 4863 3.184541 GCAACAATCTGCAATGATGGAC 58.815 45.455 0.00 0.00 42.17 4.02
3097 4942 2.302733 GTGGTCCATGGCCTTGAAAAAT 59.697 45.455 19.85 0.00 0.00 1.82
3118 4963 1.672854 TTCGGGTGTATCGGAGCAGG 61.673 60.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.