Multiple sequence alignment - TraesCS6D01G405700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G405700 chr6D 100.000 4179 0 0 1 4179 472739776 472743954 0.000000e+00 7718.0
1 TraesCS6D01G405700 chr6B 82.471 1449 145 47 2076 3468 717892432 717893827 0.000000e+00 1168.0
2 TraesCS6D01G405700 chr6B 85.845 657 32 21 3552 4179 717893969 717894593 3.520000e-180 641.0
3 TraesCS6D01G405700 chr6B 80.918 828 61 52 1078 1854 717891412 717892193 7.840000e-157 564.0
4 TraesCS6D01G405700 chr6B 88.825 349 22 10 1 335 717886770 717887115 3.010000e-111 412.0
5 TraesCS6D01G405700 chr6B 81.481 405 45 14 20 421 717877562 717877939 5.250000e-79 305.0
6 TraesCS6D01G405700 chr6B 96.629 89 0 2 333 421 717889616 717889701 1.210000e-30 145.0
7 TraesCS6D01G405700 chr6A 84.146 1312 97 59 592 1854 617045738 617044489 0.000000e+00 1168.0
8 TraesCS6D01G405700 chr6A 83.543 1191 83 35 2728 3856 617043211 617042072 0.000000e+00 1009.0
9 TraesCS6D01G405700 chr6A 95.181 83 3 1 2075 2156 617044253 617044171 3.390000e-26 130.0
10 TraesCS6D01G405700 chr6A 87.234 94 11 1 2734 2827 617654524 617654432 5.710000e-19 106.0
11 TraesCS6D01G405700 chr6A 77.852 149 16 10 2089 2224 617044064 617043920 4.480000e-10 76.8
12 TraesCS6D01G405700 chr3B 79.177 778 84 42 1110 1854 109505535 109506267 6.330000e-128 468.0
13 TraesCS6D01G405700 chr3B 84.416 308 25 11 1956 2250 109506364 109506661 8.850000e-72 281.0
14 TraesCS6D01G405700 chr5B 83.585 530 46 21 1078 1573 638411908 638411386 3.810000e-125 459.0
15 TraesCS6D01G405700 chr7A 85.276 326 23 15 1537 1854 11557794 11557486 3.140000e-81 313.0
16 TraesCS6D01G405700 chr4B 85.276 326 23 15 1537 1854 392655378 392655070 3.140000e-81 313.0
17 TraesCS6D01G405700 chr5A 84.969 326 24 15 1537 1854 473421361 473421669 1.460000e-79 307.0
18 TraesCS6D01G405700 chr5A 90.351 114 11 0 1076 1189 545751303 545751190 2.600000e-32 150.0
19 TraesCS6D01G405700 chr5A 90.000 110 11 0 1076 1185 643381743 643381852 4.360000e-30 143.0
20 TraesCS6D01G405700 chr2B 91.818 110 9 0 1076 1185 229826948 229827057 2.010000e-33 154.0
21 TraesCS6D01G405700 chr2B 92.500 40 3 0 128 167 799380503 799380542 1.620000e-04 58.4
22 TraesCS6D01G405700 chr1D 90.351 114 11 0 1076 1189 400879841 400879954 2.600000e-32 150.0
23 TraesCS6D01G405700 chr5D 88.158 76 9 0 420 495 326109030 326108955 1.600000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G405700 chr6D 472739776 472743954 4178 False 7718.00 7718 100.0000 1 4179 1 chr6D.!!$F1 4178
1 TraesCS6D01G405700 chr6B 717886770 717894593 7823 False 586.00 1168 86.9376 1 4179 5 chr6B.!!$F2 4178
2 TraesCS6D01G405700 chr6A 617042072 617045738 3666 True 595.95 1168 85.1805 592 3856 4 chr6A.!!$R2 3264
3 TraesCS6D01G405700 chr3B 109505535 109506661 1126 False 374.50 468 81.7965 1110 2250 2 chr3B.!!$F1 1140
4 TraesCS6D01G405700 chr5B 638411386 638411908 522 True 459.00 459 83.5850 1078 1573 1 chr5B.!!$R1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 3919 0.309612 GTGCCCTACCAAACGTGTTG 59.690 55.0 0.0 0.0 0.00 3.33 F
1370 5084 0.606673 GGCACTTCTTCCCACAGGTC 60.607 60.0 0.0 0.0 0.00 3.85 F
1639 5394 0.038166 GAGAATCACTGCCCCAACCA 59.962 55.0 0.0 0.0 33.17 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 5379 0.033796 CTGATGGTTGGGGCAGTGAT 60.034 55.0 0.0 0.0 0.00 3.06 R
2684 6617 0.312102 GCTTTGGTCAGCAGTGAACC 59.688 55.0 0.0 0.0 40.01 3.62 R
3289 7613 0.321919 CTGGCAAGTGGAAGCAGCTA 60.322 55.0 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.644103 ATGGCACTGTCAATTAAGCATC 57.356 40.909 0.00 0.00 0.00 3.91
97 98 4.218417 CAGGTTTGGATTACAACCTTCAGG 59.782 45.833 0.65 0.00 39.19 3.86
104 105 1.742308 TACAACCTTCAGGCCTCCTT 58.258 50.000 0.00 0.00 39.32 3.36
119 120 4.711846 GGCCTCCTTTTGTTCATAGGATTT 59.288 41.667 0.00 0.00 37.44 2.17
197 198 3.277142 AATTACAACCCTAAGCTCCGG 57.723 47.619 0.00 0.00 0.00 5.14
213 214 1.351017 TCCGGAAGCCTTCTGAACAAT 59.649 47.619 14.95 0.00 38.34 2.71
214 215 2.162681 CCGGAAGCCTTCTGAACAATT 58.837 47.619 14.95 0.00 38.34 2.32
215 216 2.558359 CCGGAAGCCTTCTGAACAATTT 59.442 45.455 14.95 0.00 38.34 1.82
216 217 3.005791 CCGGAAGCCTTCTGAACAATTTT 59.994 43.478 14.95 0.00 38.34 1.82
217 218 4.501400 CCGGAAGCCTTCTGAACAATTTTT 60.501 41.667 14.95 0.00 38.34 1.94
245 246 4.685628 CGATTTGGCTGCTTTTAAACACAT 59.314 37.500 0.00 0.00 0.00 3.21
258 259 2.425610 CACATGCACGCACACACG 60.426 61.111 0.00 0.00 39.50 4.49
259 260 4.312231 ACATGCACGCACACACGC 62.312 61.111 0.00 0.00 36.19 5.34
273 274 2.358615 ACGCGCACACACATCCAT 60.359 55.556 5.73 0.00 0.00 3.41
274 275 2.098871 CGCGCACACACATCCATG 59.901 61.111 8.75 0.00 0.00 3.66
369 2895 9.662947 CTTCAGCCAATCAATCACTCATATATA 57.337 33.333 0.00 0.00 0.00 0.86
445 3868 2.186155 GGTAACCAAACGGGGCATC 58.814 57.895 0.00 0.00 42.91 3.91
447 3870 1.065272 GGTAACCAAACGGGGCATCTA 60.065 52.381 0.00 0.00 42.91 1.98
453 3876 1.065418 CAAACGGGGCATCTACTTCCT 60.065 52.381 0.00 0.00 0.00 3.36
457 3880 1.889573 GGGCATCTACTTCCTGCGC 60.890 63.158 0.00 0.00 40.81 6.09
477 3900 0.326264 GGGCCTGGCTGAGGTATATG 59.674 60.000 19.68 0.00 44.97 1.78
478 3901 1.059913 GGCCTGGCTGAGGTATATGT 58.940 55.000 19.68 0.00 44.97 2.29
480 3903 1.879796 GCCTGGCTGAGGTATATGTGC 60.880 57.143 12.43 0.00 44.97 4.57
484 3907 2.257207 GGCTGAGGTATATGTGCCCTA 58.743 52.381 0.00 0.00 34.81 3.53
486 3909 2.028020 GCTGAGGTATATGTGCCCTACC 60.028 54.545 0.00 0.00 36.05 3.18
492 3915 3.432608 GGTATATGTGCCCTACCAAACGT 60.433 47.826 0.00 0.00 35.90 3.99
496 3919 0.309612 GTGCCCTACCAAACGTGTTG 59.690 55.000 0.00 0.00 0.00 3.33
501 3924 3.618019 GCCCTACCAAACGTGTTGATAGA 60.618 47.826 11.30 0.00 0.00 1.98
507 3930 6.445357 ACCAAACGTGTTGATAGAGTTTTT 57.555 33.333 10.71 0.00 33.38 1.94
518 3941 7.762159 TGTTGATAGAGTTTTTGTTTTGGGAAC 59.238 33.333 0.00 0.00 0.00 3.62
529 3952 9.774413 TTTTTGTTTTGGGAACTGTACTTTTTA 57.226 25.926 0.00 0.00 0.00 1.52
531 3954 7.941431 TGTTTTGGGAACTGTACTTTTTAGA 57.059 32.000 0.00 0.00 0.00 2.10
533 3956 9.629878 TGTTTTGGGAACTGTACTTTTTAGATA 57.370 29.630 0.00 0.00 0.00 1.98
538 3961 9.856162 TGGGAACTGTACTTTTTAGATAGTTTT 57.144 29.630 0.00 0.00 0.00 2.43
559 3982 9.974980 AGTTTTGTTCTGTCTTTTTGTCTTTTA 57.025 25.926 0.00 0.00 0.00 1.52
833 4308 2.030805 GCTGGGCTGTTTTGTCAAGTAG 60.031 50.000 0.00 0.00 0.00 2.57
834 4309 2.554032 CTGGGCTGTTTTGTCAAGTAGG 59.446 50.000 0.00 0.00 0.00 3.18
835 4310 2.173782 TGGGCTGTTTTGTCAAGTAGGA 59.826 45.455 0.00 0.00 0.00 2.94
836 4311 2.814336 GGGCTGTTTTGTCAAGTAGGAG 59.186 50.000 0.00 0.00 0.00 3.69
837 4312 2.814336 GGCTGTTTTGTCAAGTAGGAGG 59.186 50.000 0.00 0.00 0.00 4.30
843 4318 4.351874 TTTGTCAAGTAGGAGGTCCTTG 57.648 45.455 3.25 0.00 46.09 3.61
844 4319 2.972348 TGTCAAGTAGGAGGTCCTTGT 58.028 47.619 3.25 0.00 46.09 3.16
845 4320 4.122337 TGTCAAGTAGGAGGTCCTTGTA 57.878 45.455 3.25 0.00 46.09 2.41
847 4322 4.466370 TGTCAAGTAGGAGGTCCTTGTATG 59.534 45.833 3.25 0.00 46.09 2.39
848 4323 4.466726 GTCAAGTAGGAGGTCCTTGTATGT 59.533 45.833 3.25 0.00 46.09 2.29
849 4324 4.710375 TCAAGTAGGAGGTCCTTGTATGTC 59.290 45.833 3.25 0.00 46.09 3.06
850 4325 3.644335 AGTAGGAGGTCCTTGTATGTCC 58.356 50.000 3.25 0.00 46.09 4.02
851 4326 2.950990 AGGAGGTCCTTGTATGTCCT 57.049 50.000 0.00 0.00 46.09 3.85
853 4328 4.348020 AGGAGGTCCTTGTATGTCCTTA 57.652 45.455 0.00 0.00 46.09 2.69
896 4543 4.104897 GGTAGGAGGAATTAGAATGGGCTT 59.895 45.833 0.00 0.00 0.00 4.35
897 4544 4.445557 AGGAGGAATTAGAATGGGCTTC 57.554 45.455 0.00 0.00 0.00 3.86
898 4545 4.050757 AGGAGGAATTAGAATGGGCTTCT 58.949 43.478 0.00 0.00 46.16 2.85
899 4546 4.103943 AGGAGGAATTAGAATGGGCTTCTC 59.896 45.833 0.00 0.00 43.32 2.87
921 4568 0.814010 AAGCACAACAGTGGACCGAC 60.814 55.000 0.00 0.00 33.85 4.79
953 4600 2.922503 GGCCCAACCCAACCCAAG 60.923 66.667 0.00 0.00 0.00 3.61
954 4601 2.922503 GCCCAACCCAACCCAAGG 60.923 66.667 0.00 0.00 0.00 3.61
955 4602 2.939298 CCCAACCCAACCCAAGGA 59.061 61.111 0.00 0.00 0.00 3.36
956 4603 1.234529 CCCAACCCAACCCAAGGAA 59.765 57.895 0.00 0.00 0.00 3.36
957 4604 0.831711 CCCAACCCAACCCAAGGAAG 60.832 60.000 0.00 0.00 0.00 3.46
958 4605 0.831711 CCAACCCAACCCAAGGAAGG 60.832 60.000 0.00 0.00 0.00 3.46
1004 4657 2.507992 CGTCTTCTCCGCAGCAGG 60.508 66.667 0.00 0.00 0.00 4.85
1015 4668 4.717313 CAGCAGGAGCAGCAGCCA 62.717 66.667 0.00 0.00 45.49 4.75
1032 4692 1.834188 CCACAACCAACCCTATCCAC 58.166 55.000 0.00 0.00 0.00 4.02
1038 4698 1.080498 ACCAACCCTATCCACCTCTCA 59.920 52.381 0.00 0.00 0.00 3.27
1043 4703 2.315176 CCCTATCCACCTCTCACTCTG 58.685 57.143 0.00 0.00 0.00 3.35
1044 4704 1.686052 CCTATCCACCTCTCACTCTGC 59.314 57.143 0.00 0.00 0.00 4.26
1045 4705 2.382882 CTATCCACCTCTCACTCTGCA 58.617 52.381 0.00 0.00 0.00 4.41
1046 4706 1.193323 ATCCACCTCTCACTCTGCAG 58.807 55.000 7.63 7.63 0.00 4.41
1047 4707 0.902048 TCCACCTCTCACTCTGCAGG 60.902 60.000 15.13 7.28 0.00 4.85
1190 4873 2.167398 TACAACGCACTCCTCCAGGC 62.167 60.000 0.00 0.00 34.44 4.85
1191 4874 3.241530 AACGCACTCCTCCAGGCA 61.242 61.111 0.00 0.00 34.44 4.75
1192 4875 2.818169 AACGCACTCCTCCAGGCAA 61.818 57.895 0.00 0.00 34.44 4.52
1194 4877 2.328099 CGCACTCCTCCAGGCAAAC 61.328 63.158 0.00 0.00 34.44 2.93
1195 4878 2.328099 GCACTCCTCCAGGCAAACG 61.328 63.158 0.00 0.00 34.44 3.60
1196 4879 2.032681 ACTCCTCCAGGCAAACGC 59.967 61.111 0.00 0.00 34.44 4.84
1197 4880 2.032528 CTCCTCCAGGCAAACGCA 59.967 61.111 0.00 0.00 34.44 5.24
1198 4881 1.600636 CTCCTCCAGGCAAACGCAA 60.601 57.895 0.00 0.00 34.44 4.85
1199 4882 1.152860 TCCTCCAGGCAAACGCAAA 60.153 52.632 0.00 0.00 34.44 3.68
1280 4982 0.890683 CTCCTGCCCCAACAATCAAC 59.109 55.000 0.00 0.00 0.00 3.18
1286 4993 2.038295 TGCCCCAACAATCAACCAAATC 59.962 45.455 0.00 0.00 0.00 2.17
1334 5041 4.733725 ACCCGGAAGCCCAGCCTA 62.734 66.667 0.73 0.00 0.00 3.93
1370 5084 0.606673 GGCACTTCTTCCCACAGGTC 60.607 60.000 0.00 0.00 0.00 3.85
1371 5085 0.606673 GCACTTCTTCCCACAGGTCC 60.607 60.000 0.00 0.00 0.00 4.46
1372 5086 1.059913 CACTTCTTCCCACAGGTCCT 58.940 55.000 0.00 0.00 0.00 3.85
1401 5116 3.690460 TCTCCCTGCATTCCTTTTCTTC 58.310 45.455 0.00 0.00 0.00 2.87
1402 5117 3.331889 TCTCCCTGCATTCCTTTTCTTCT 59.668 43.478 0.00 0.00 0.00 2.85
1438 5159 6.636705 ACCAATCCAATGACTGATTTGATTG 58.363 36.000 11.52 11.52 45.47 2.67
1442 5163 8.942338 AATCCAATGACTGATTTGATTGATTG 57.058 30.769 0.00 0.00 35.87 2.67
1443 5164 7.706100 TCCAATGACTGATTTGATTGATTGA 57.294 32.000 0.00 0.00 0.00 2.57
1451 5198 7.258441 ACTGATTTGATTGATTGATTGCTCTG 58.742 34.615 0.00 0.00 0.00 3.35
1472 5227 2.360350 CACCAGCTGTCGGCCAAT 60.360 61.111 13.81 0.00 43.05 3.16
1475 5230 1.973281 CCAGCTGTCGGCCAATGTT 60.973 57.895 13.81 0.00 43.05 2.71
1618 5373 2.158871 ACAAGAACTTCAAGCCGGTACA 60.159 45.455 1.90 0.00 0.00 2.90
1619 5374 2.457366 AGAACTTCAAGCCGGTACAG 57.543 50.000 1.90 0.00 0.00 2.74
1620 5375 1.002087 AGAACTTCAAGCCGGTACAGG 59.998 52.381 7.81 7.81 0.00 4.00
1621 5376 1.001633 GAACTTCAAGCCGGTACAGGA 59.998 52.381 16.97 0.00 0.00 3.86
1624 5379 1.275291 CTTCAAGCCGGTACAGGAGAA 59.725 52.381 16.97 13.89 0.00 2.87
1625 5380 1.568504 TCAAGCCGGTACAGGAGAAT 58.431 50.000 16.97 0.00 0.00 2.40
1626 5381 1.480954 TCAAGCCGGTACAGGAGAATC 59.519 52.381 16.97 0.00 0.00 2.52
1627 5382 1.207089 CAAGCCGGTACAGGAGAATCA 59.793 52.381 16.97 0.00 36.25 2.57
1630 5385 1.471676 GCCGGTACAGGAGAATCACTG 60.472 57.143 16.97 3.90 38.72 3.66
1633 5388 1.134371 GGTACAGGAGAATCACTGCCC 60.134 57.143 5.14 2.84 37.04 5.36
1634 5389 1.134371 GTACAGGAGAATCACTGCCCC 60.134 57.143 5.14 0.00 37.04 5.80
1639 5394 0.038166 GAGAATCACTGCCCCAACCA 59.962 55.000 0.00 0.00 33.17 3.67
1651 5417 0.108041 CCCAACCATCAGCATTTGCC 60.108 55.000 0.00 0.00 43.38 4.52
1653 5419 0.244450 CAACCATCAGCATTTGCCGT 59.756 50.000 0.00 0.00 43.38 5.68
1654 5420 0.527565 AACCATCAGCATTTGCCGTC 59.472 50.000 0.00 0.00 43.38 4.79
1655 5421 0.608856 ACCATCAGCATTTGCCGTCA 60.609 50.000 0.00 0.00 43.38 4.35
1656 5422 0.742505 CCATCAGCATTTGCCGTCAT 59.257 50.000 0.00 0.00 43.38 3.06
1657 5423 1.535226 CCATCAGCATTTGCCGTCATG 60.535 52.381 0.00 0.00 43.38 3.07
1658 5424 0.742505 ATCAGCATTTGCCGTCATGG 59.257 50.000 0.00 0.00 43.38 3.66
1671 5437 3.218453 CCGTCATGGCCATAATAACCAA 58.782 45.455 20.30 0.00 36.94 3.67
1672 5438 3.826157 CCGTCATGGCCATAATAACCAAT 59.174 43.478 20.30 0.00 36.94 3.16
1673 5439 4.082787 CCGTCATGGCCATAATAACCAATC 60.083 45.833 20.30 0.00 36.94 2.67
1675 5441 5.241506 CGTCATGGCCATAATAACCAATCTT 59.758 40.000 20.30 0.00 36.94 2.40
1707 5475 3.939066 ACCTGTATACACTGAACCTTGC 58.061 45.455 0.08 0.00 0.00 4.01
1709 5477 3.307410 CCTGTATACACTGAACCTTGCCA 60.307 47.826 0.08 0.00 0.00 4.92
1710 5478 4.517285 CTGTATACACTGAACCTTGCCAT 58.483 43.478 0.08 0.00 0.00 4.40
1713 5481 1.620822 ACACTGAACCTTGCCATTCC 58.379 50.000 0.00 0.00 0.00 3.01
1720 5488 2.206576 ACCTTGCCATTCCTCTGTTC 57.793 50.000 0.00 0.00 0.00 3.18
1721 5489 1.272147 ACCTTGCCATTCCTCTGTTCC 60.272 52.381 0.00 0.00 0.00 3.62
1722 5490 1.005215 CCTTGCCATTCCTCTGTTCCT 59.995 52.381 0.00 0.00 0.00 3.36
1723 5491 2.089980 CTTGCCATTCCTCTGTTCCTG 58.910 52.381 0.00 0.00 0.00 3.86
1724 5492 0.322816 TGCCATTCCTCTGTTCCTGC 60.323 55.000 0.00 0.00 0.00 4.85
1725 5493 1.034292 GCCATTCCTCTGTTCCTGCC 61.034 60.000 0.00 0.00 0.00 4.85
1726 5494 0.622665 CCATTCCTCTGTTCCTGCCT 59.377 55.000 0.00 0.00 0.00 4.75
1727 5495 1.681166 CCATTCCTCTGTTCCTGCCTG 60.681 57.143 0.00 0.00 0.00 4.85
1822 5590 2.187946 GGCCAGGACGTCAGGATG 59.812 66.667 25.19 14.30 37.54 3.51
1871 5666 1.624336 ACTTGTACTGGTGCCGACTA 58.376 50.000 0.00 0.00 0.00 2.59
1885 5680 1.439679 CGACTACTTCCCTTTGTGCC 58.560 55.000 0.00 0.00 0.00 5.01
1886 5681 1.439679 GACTACTTCCCTTTGTGCCG 58.560 55.000 0.00 0.00 0.00 5.69
1888 5683 1.142262 ACTACTTCCCTTTGTGCCGTT 59.858 47.619 0.00 0.00 0.00 4.44
1889 5684 1.535462 CTACTTCCCTTTGTGCCGTTG 59.465 52.381 0.00 0.00 0.00 4.10
1890 5685 0.106918 ACTTCCCTTTGTGCCGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
1891 5686 1.028905 CTTCCCTTTGTGCCGTTGAA 58.971 50.000 0.00 0.00 0.00 2.69
1895 5690 4.223556 TCCCTTTGTGCCGTTGAATATA 57.776 40.909 0.00 0.00 0.00 0.86
1896 5691 3.942748 TCCCTTTGTGCCGTTGAATATAC 59.057 43.478 0.00 0.00 0.00 1.47
1898 5693 4.338118 CCCTTTGTGCCGTTGAATATACAT 59.662 41.667 0.00 0.00 0.00 2.29
1899 5694 5.273170 CCTTTGTGCCGTTGAATATACATG 58.727 41.667 0.00 0.00 0.00 3.21
1900 5695 5.065859 CCTTTGTGCCGTTGAATATACATGA 59.934 40.000 0.00 0.00 0.00 3.07
1902 5697 3.559655 TGTGCCGTTGAATATACATGAGC 59.440 43.478 0.00 0.00 0.00 4.26
1903 5698 3.058914 GTGCCGTTGAATATACATGAGCC 60.059 47.826 0.00 0.00 0.00 4.70
1906 5701 3.059884 CGTTGAATATACATGAGCCGCT 58.940 45.455 0.00 0.00 0.00 5.52
1907 5702 3.494626 CGTTGAATATACATGAGCCGCTT 59.505 43.478 0.00 0.00 0.00 4.68
1908 5703 4.376413 CGTTGAATATACATGAGCCGCTTC 60.376 45.833 0.00 0.00 0.00 3.86
1914 5709 1.010350 CATGAGCCGCTTCGCAATC 60.010 57.895 0.00 0.00 0.00 2.67
1915 5710 2.528743 ATGAGCCGCTTCGCAATCG 61.529 57.895 0.00 0.00 0.00 3.34
1916 5711 4.581648 GAGCCGCTTCGCAATCGC 62.582 66.667 0.00 0.00 35.26 4.58
1919 5714 4.228097 CCGCTTCGCAATCGCCAG 62.228 66.667 0.00 0.00 35.26 4.85
1928 5723 2.159585 TCGCAATCGCCAGTTTGTTATG 60.160 45.455 0.00 0.00 35.26 1.90
1933 5728 1.265635 TCGCCAGTTTGTTATGTGTGC 59.734 47.619 0.00 0.00 0.00 4.57
1934 5729 1.685302 GCCAGTTTGTTATGTGTGCG 58.315 50.000 0.00 0.00 0.00 5.34
1954 5749 0.374758 CACACGCCTGTATGATGCAC 59.625 55.000 0.00 0.00 0.00 4.57
1969 5767 6.915544 ATGATGCACTTATCTACACAACTG 57.084 37.500 0.00 0.00 0.00 3.16
1971 5769 4.001618 TGCACTTATCTACACAACTGCA 57.998 40.909 0.00 0.00 0.00 4.41
1982 5780 7.680442 TCTACACAACTGCAATGCTAAATTA 57.320 32.000 6.82 0.00 0.00 1.40
2021 5819 1.070445 CTGAGATGGTCTGCTGGGATC 59.930 57.143 0.00 0.00 0.00 3.36
2041 5839 4.247267 TCCATTTGCTGCTTCTCTTTTG 57.753 40.909 0.00 0.00 0.00 2.44
2042 5840 3.890756 TCCATTTGCTGCTTCTCTTTTGA 59.109 39.130 0.00 0.00 0.00 2.69
2043 5841 4.525487 TCCATTTGCTGCTTCTCTTTTGAT 59.475 37.500 0.00 0.00 0.00 2.57
2070 5868 2.473070 TCCCATTAAGATCACCACCGA 58.527 47.619 0.00 0.00 0.00 4.69
2245 6137 5.911280 CAGCACAGCACTAAATATTGTATGC 59.089 40.000 9.10 9.10 0.00 3.14
2285 6177 2.283145 AGTGCATGCCAGTTTCTCTT 57.717 45.000 16.68 0.00 0.00 2.85
2295 6187 3.250040 GCCAGTTTCTCTTTCGTAAAGCA 59.750 43.478 0.00 0.00 38.39 3.91
2347 6246 1.195448 CACCAGTCACATTCGCTCAAC 59.805 52.381 0.00 0.00 0.00 3.18
2376 6279 3.450904 ACCACATATCAGTACCACTGGT 58.549 45.455 5.88 5.88 45.94 4.00
2423 6332 6.323739 TCACTAAATTGGCCAGTTTCTCTTTT 59.676 34.615 27.49 6.89 0.00 2.27
2428 6337 5.514274 TTGGCCAGTTTCTCTTTTGTAAG 57.486 39.130 5.11 0.00 0.00 2.34
2474 6383 7.399523 CGAGTAACTTGATGTGCCTTTAATAC 58.600 38.462 0.00 0.00 0.00 1.89
2478 6387 5.570320 ACTTGATGTGCCTTTAATACCTGT 58.430 37.500 0.00 0.00 0.00 4.00
2484 6393 3.127030 GTGCCTTTAATACCTGTCAGTGC 59.873 47.826 0.00 0.00 0.00 4.40
2487 6396 3.941483 CCTTTAATACCTGTCAGTGCCTG 59.059 47.826 0.00 0.00 0.00 4.85
2488 6397 4.323485 CCTTTAATACCTGTCAGTGCCTGA 60.323 45.833 0.00 1.25 38.25 3.86
2489 6398 5.431765 CTTTAATACCTGTCAGTGCCTGAT 58.568 41.667 7.95 0.00 42.73 2.90
2490 6399 6.408092 CCTTTAATACCTGTCAGTGCCTGATA 60.408 42.308 7.95 5.15 42.73 2.15
2491 6400 4.408182 AATACCTGTCAGTGCCTGATAC 57.592 45.455 7.95 0.00 42.73 2.24
2492 6401 1.644509 ACCTGTCAGTGCCTGATACA 58.355 50.000 7.95 3.32 42.73 2.29
2493 6402 1.276421 ACCTGTCAGTGCCTGATACAC 59.724 52.381 7.95 0.00 42.73 2.90
2494 6403 1.276138 CCTGTCAGTGCCTGATACACA 59.724 52.381 7.95 2.45 42.73 3.72
2495 6404 2.093288 CCTGTCAGTGCCTGATACACAT 60.093 50.000 7.95 0.00 42.73 3.21
2496 6405 3.193263 CTGTCAGTGCCTGATACACATC 58.807 50.000 7.95 0.00 42.73 3.06
2497 6406 2.833943 TGTCAGTGCCTGATACACATCT 59.166 45.455 7.95 0.00 42.73 2.90
2498 6407 3.118992 TGTCAGTGCCTGATACACATCTC 60.119 47.826 7.95 0.00 42.73 2.75
2499 6408 2.432146 TCAGTGCCTGATACACATCTCC 59.568 50.000 1.25 0.00 40.59 3.71
2500 6409 2.433604 CAGTGCCTGATACACATCTCCT 59.566 50.000 0.00 0.00 40.59 3.69
2508 6417 2.509166 TACACATCTCCTCCTCGTGT 57.491 50.000 0.00 0.00 42.98 4.49
2515 6424 2.317040 TCTCCTCCTCGTGTCTTGTTT 58.683 47.619 0.00 0.00 0.00 2.83
2522 6431 5.013568 TCCTCGTGTCTTGTTTGTTCTTA 57.986 39.130 0.00 0.00 0.00 2.10
2523 6432 4.807304 TCCTCGTGTCTTGTTTGTTCTTAC 59.193 41.667 0.00 0.00 0.00 2.34
2526 6435 5.172934 TCGTGTCTTGTTTGTTCTTACACT 58.827 37.500 0.00 0.00 34.93 3.55
2527 6436 5.640357 TCGTGTCTTGTTTGTTCTTACACTT 59.360 36.000 0.00 0.00 34.93 3.16
2528 6437 6.148150 TCGTGTCTTGTTTGTTCTTACACTTT 59.852 34.615 0.00 0.00 34.93 2.66
2530 6439 7.325097 CGTGTCTTGTTTGTTCTTACACTTTTT 59.675 33.333 0.00 0.00 34.93 1.94
2569 6499 1.937191 TCCCTTCCTTTTTGGCCATC 58.063 50.000 6.09 0.00 35.26 3.51
2571 6501 1.551883 CCCTTCCTTTTTGGCCATCTG 59.448 52.381 6.09 0.00 35.26 2.90
2574 6504 3.071457 CCTTCCTTTTTGGCCATCTGTTT 59.929 43.478 6.09 0.00 35.26 2.83
2575 6505 4.283212 CCTTCCTTTTTGGCCATCTGTTTA 59.717 41.667 6.09 0.00 35.26 2.01
2577 6507 5.659440 TCCTTTTTGGCCATCTGTTTATC 57.341 39.130 6.09 0.00 35.26 1.75
2578 6508 5.332743 TCCTTTTTGGCCATCTGTTTATCT 58.667 37.500 6.09 0.00 35.26 1.98
2579 6509 5.185635 TCCTTTTTGGCCATCTGTTTATCTG 59.814 40.000 6.09 0.00 35.26 2.90
2580 6510 5.185635 CCTTTTTGGCCATCTGTTTATCTGA 59.814 40.000 6.09 0.00 0.00 3.27
2581 6511 6.127253 CCTTTTTGGCCATCTGTTTATCTGAT 60.127 38.462 6.09 0.00 35.58 2.90
2583 6513 6.855763 TTTGGCCATCTGTTTATCTGATTT 57.144 33.333 6.09 0.00 33.48 2.17
2584 6514 7.953005 TTTGGCCATCTGTTTATCTGATTTA 57.047 32.000 6.09 0.00 33.48 1.40
2585 6515 7.572523 TTGGCCATCTGTTTATCTGATTTAG 57.427 36.000 6.09 0.00 33.48 1.85
2586 6516 6.662755 TGGCCATCTGTTTATCTGATTTAGT 58.337 36.000 0.00 0.00 33.48 2.24
2587 6517 7.801104 TGGCCATCTGTTTATCTGATTTAGTA 58.199 34.615 0.00 0.00 33.48 1.82
2588 6518 7.933577 TGGCCATCTGTTTATCTGATTTAGTAG 59.066 37.037 0.00 0.00 33.48 2.57
2589 6519 7.934120 GGCCATCTGTTTATCTGATTTAGTAGT 59.066 37.037 0.00 0.00 33.48 2.73
2628 6561 6.931790 ATCTGAGGAGTATATGTTCTGCAT 57.068 37.500 0.00 0.00 41.42 3.96
2648 6581 9.502091 TCTGCATACCTTATACCACAATTAATC 57.498 33.333 0.00 0.00 0.00 1.75
2702 6635 1.679139 TGGTTCACTGCTGACCAAAG 58.321 50.000 0.00 0.00 29.65 2.77
2721 6655 5.163513 CAAAGCATTACCAAGCAAGGTTAG 58.836 41.667 5.36 0.00 43.08 2.34
2746 6680 5.765576 TTATGTTTCCTACCTGGCTGTAA 57.234 39.130 0.00 0.00 35.26 2.41
2889 7184 0.605589 GAACCCGTTTGTGGAGGAGG 60.606 60.000 0.00 0.00 0.00 4.30
2928 7223 1.710013 TAGCGCTCTAGTTGTGTTGC 58.290 50.000 16.34 0.00 0.00 4.17
2970 7270 7.762615 CACCATTTCATTTCATTGTATTGCTCT 59.237 33.333 0.00 0.00 0.00 4.09
2975 7275 7.092137 TCATTTCATTGTATTGCTCTGGAAG 57.908 36.000 0.00 0.00 0.00 3.46
3011 7315 2.819608 GCAAGCACCAGTTTTATGGAGA 59.180 45.455 0.00 0.00 43.57 3.71
3016 7323 5.140454 AGCACCAGTTTTATGGAGAAAAGT 58.860 37.500 0.00 0.00 43.57 2.66
3032 7339 7.148120 TGGAGAAAAGTCGTATGTAGAAGTAGG 60.148 40.741 0.00 0.00 0.00 3.18
3036 7343 6.448207 AAGTCGTATGTAGAAGTAGGAACC 57.552 41.667 0.00 0.00 0.00 3.62
3055 7362 5.888161 GGAACCCTAGACATTTCATTGATGT 59.112 40.000 0.00 0.00 40.27 3.06
3071 7378 6.716173 TCATTGATGTGATTGAGTCTGGAAAA 59.284 34.615 0.00 0.00 0.00 2.29
3093 7400 6.566197 AATTCAGGATTCAGTTGTGTCTTC 57.434 37.500 0.00 0.00 0.00 2.87
3102 7409 3.059884 CAGTTGTGTCTTCATGTAGCGT 58.940 45.455 0.00 0.00 0.00 5.07
3133 7440 2.307496 TTGGTTGGATGAAGGCATGT 57.693 45.000 0.00 0.00 34.11 3.21
3139 7446 4.114794 GTTGGATGAAGGCATGTAAATGC 58.885 43.478 9.58 9.58 46.27 3.56
3151 7458 4.699637 CATGTAAATGCCCATGAAATGCT 58.300 39.130 0.00 0.00 44.97 3.79
3163 7470 7.288389 TGCCCATGAAATGCTAATAAGAAGAAT 59.712 33.333 0.00 0.00 44.97 2.40
3164 7471 7.597743 GCCCATGAAATGCTAATAAGAAGAATG 59.402 37.037 0.00 0.00 44.97 2.67
3165 7472 8.636213 CCCATGAAATGCTAATAAGAAGAATGT 58.364 33.333 0.00 0.00 44.97 2.71
3193 7500 4.067896 ACAAGGTGAAGTGCATGTAAGAG 58.932 43.478 0.00 0.00 0.00 2.85
3257 7581 1.550524 CCACCTCGACATCTTTGGAGA 59.449 52.381 0.00 0.00 36.09 3.71
3289 7613 8.095452 ACATATTCTTCTCCTTTATGGTCTGT 57.905 34.615 0.00 0.00 37.07 3.41
3315 7639 1.165907 TTCCACTTGCCAGCAACTCG 61.166 55.000 0.00 0.00 0.00 4.18
3360 7687 2.167487 CCTTCTTCTCAGGAGTAGGCAC 59.833 54.545 0.00 0.00 32.41 5.01
3369 7696 0.250513 GGAGTAGGCACTGAAGGTGG 59.749 60.000 0.00 0.00 45.44 4.61
3370 7697 1.267121 GAGTAGGCACTGAAGGTGGA 58.733 55.000 0.00 0.00 45.44 4.02
3371 7698 1.623811 GAGTAGGCACTGAAGGTGGAA 59.376 52.381 0.00 0.00 45.44 3.53
3373 7700 2.644798 AGTAGGCACTGAAGGTGGAATT 59.355 45.455 0.00 0.00 45.44 2.17
3383 7710 3.758931 GTGGAATTGGCCGCCACC 61.759 66.667 13.00 11.26 44.86 4.61
3399 7726 0.110238 CACCGGAACTGCAACAATCG 60.110 55.000 9.46 0.00 0.00 3.34
3411 7750 3.155998 GCAACAATCGTTCATTCAGTCG 58.844 45.455 0.00 0.00 31.13 4.18
3415 7754 3.675225 ACAATCGTTCATTCAGTCGTCAG 59.325 43.478 0.00 0.00 0.00 3.51
3421 7761 4.153986 GTTCATTCAGTCGTCAGCAAATG 58.846 43.478 0.00 0.00 0.00 2.32
3447 7787 2.094906 GCAGAGCATTGCAATGACAGAA 60.095 45.455 37.36 0.00 43.53 3.02
3457 7797 4.671377 TGCAATGACAGAACAACAAGAAC 58.329 39.130 0.00 0.00 0.00 3.01
3495 7879 1.272425 TGCCAATGGAAGACCGGATTT 60.272 47.619 9.46 0.58 39.42 2.17
3500 7884 4.440525 CCAATGGAAGACCGGATTTGAATG 60.441 45.833 9.46 0.00 39.42 2.67
3545 7930 4.164822 CAATGCACTTGGAACGAAATCT 57.835 40.909 0.00 0.00 0.00 2.40
3546 7931 3.837213 ATGCACTTGGAACGAAATCTG 57.163 42.857 0.00 0.00 0.00 2.90
3548 7933 2.807967 TGCACTTGGAACGAAATCTGAG 59.192 45.455 0.00 0.00 0.00 3.35
3765 8194 8.895845 CAAGAAATATTGTGTTGAAAGAACTCG 58.104 33.333 0.00 0.00 0.00 4.18
3913 8342 2.073816 ACCGCTGAACAAAACTATCCG 58.926 47.619 0.00 0.00 0.00 4.18
3953 8382 7.038658 AGCAAAATAAAATGGGCAAGGTAAGTA 60.039 33.333 0.00 0.00 0.00 2.24
4013 8442 3.059352 ACAGGCCATGAACTGTACTTC 57.941 47.619 17.21 0.00 45.45 3.01
4029 8458 4.281941 TGTACTTCTCAGCAATCAGACTGT 59.718 41.667 1.59 0.00 35.37 3.55
4036 8465 3.748048 TCAGCAATCAGACTGTAAGCAAC 59.252 43.478 14.68 0.00 37.60 4.17
4037 8466 3.499537 CAGCAATCAGACTGTAAGCAACA 59.500 43.478 14.68 0.00 37.60 3.33
4038 8467 4.023792 CAGCAATCAGACTGTAAGCAACAA 60.024 41.667 14.68 0.00 37.74 2.83
4039 8468 4.214971 AGCAATCAGACTGTAAGCAACAAG 59.785 41.667 14.68 0.00 37.74 3.16
4040 8469 4.023707 GCAATCAGACTGTAAGCAACAAGT 60.024 41.667 1.59 0.00 37.74 3.16
4041 8470 5.683859 CAATCAGACTGTAAGCAACAAGTC 58.316 41.667 1.59 10.81 37.74 3.01
4042 8471 3.728845 TCAGACTGTAAGCAACAAGTCC 58.271 45.455 1.59 0.00 37.74 3.85
4043 8472 3.388024 TCAGACTGTAAGCAACAAGTCCT 59.612 43.478 1.59 0.00 37.74 3.85
4044 8473 3.496130 CAGACTGTAAGCAACAAGTCCTG 59.504 47.826 13.22 0.00 37.74 3.86
4045 8474 3.388024 AGACTGTAAGCAACAAGTCCTGA 59.612 43.478 13.22 0.00 37.74 3.86
4046 8475 4.127171 GACTGTAAGCAACAAGTCCTGAA 58.873 43.478 0.00 0.00 37.74 3.02
4054 8483 5.836347 AGCAACAAGTCCTGAAGAAAATTC 58.164 37.500 0.00 0.00 0.00 2.17
4135 8564 1.271379 CGGATGACAAACTTGAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
4142 8571 1.818674 CAAACTTGAGGGGTGTATGGC 59.181 52.381 0.00 0.00 0.00 4.40
4167 8596 1.199789 GTTTCAGCATGCGTCCATTCA 59.800 47.619 13.01 0.00 34.76 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.394352 CTGGGTTAGTGGGTGGATGC 60.394 60.000 0.00 0.00 0.00 3.91
21 22 0.768622 TTGTCTGGGTTAGTGGGTGG 59.231 55.000 0.00 0.00 0.00 4.61
97 98 5.654209 AGAAATCCTATGAACAAAAGGAGGC 59.346 40.000 12.45 6.67 42.53 4.70
158 159 8.592105 TGTAATTTGAAGGAGCAAAATCAAAG 57.408 30.769 11.56 0.00 42.89 2.77
162 163 6.368791 GGGTTGTAATTTGAAGGAGCAAAATC 59.631 38.462 0.00 0.00 40.72 2.17
168 169 5.393135 GCTTAGGGTTGTAATTTGAAGGAGC 60.393 44.000 0.00 0.00 0.00 4.70
215 216 3.451141 AAGCAGCCAAATCGTGAAAAA 57.549 38.095 0.00 0.00 0.00 1.94
216 217 3.451141 AAAGCAGCCAAATCGTGAAAA 57.549 38.095 0.00 0.00 0.00 2.29
217 218 3.451141 AAAAGCAGCCAAATCGTGAAA 57.549 38.095 0.00 0.00 0.00 2.69
258 259 0.039256 AAACATGGATGTGTGTGCGC 60.039 50.000 0.00 0.00 41.61 6.09
259 260 2.287487 TGAAAACATGGATGTGTGTGCG 60.287 45.455 0.00 0.00 41.61 5.34
260 261 3.367992 TGAAAACATGGATGTGTGTGC 57.632 42.857 0.00 0.00 41.61 4.57
261 262 3.676172 GCATGAAAACATGGATGTGTGTG 59.324 43.478 11.29 0.00 41.61 3.82
262 263 3.306225 GGCATGAAAACATGGATGTGTGT 60.306 43.478 11.29 0.00 41.61 3.72
263 264 3.255725 GGCATGAAAACATGGATGTGTG 58.744 45.455 11.29 0.00 41.61 3.82
264 265 2.898612 TGGCATGAAAACATGGATGTGT 59.101 40.909 11.29 0.00 41.61 3.72
265 266 3.596310 TGGCATGAAAACATGGATGTG 57.404 42.857 11.29 0.00 41.61 3.21
273 274 3.635836 TGTGATGAGTTGGCATGAAAACA 59.364 39.130 11.97 3.95 0.00 2.83
274 275 3.983344 GTGTGATGAGTTGGCATGAAAAC 59.017 43.478 0.00 0.00 0.00 2.43
386 2912 4.508551 TGTTGGAGATGGTTGCAGATAT 57.491 40.909 0.00 0.00 0.00 1.63
437 3860 1.227674 GCAGGAAGTAGATGCCCCG 60.228 63.158 0.00 0.00 33.81 5.73
441 3864 2.240500 CCGCGCAGGAAGTAGATGC 61.241 63.158 8.75 0.00 45.00 3.91
465 3888 2.028020 GGTAGGGCACATATACCTCAGC 60.028 54.545 0.00 0.00 36.76 4.26
477 3900 0.309612 CAACACGTTTGGTAGGGCAC 59.690 55.000 0.00 0.00 0.00 5.01
478 3901 0.180642 TCAACACGTTTGGTAGGGCA 59.819 50.000 9.54 0.00 0.00 5.36
480 3903 4.181578 CTCTATCAACACGTTTGGTAGGG 58.818 47.826 20.66 17.03 34.68 3.53
484 3907 6.127842 ACAAAAACTCTATCAACACGTTTGGT 60.128 34.615 9.54 6.19 0.00 3.67
486 3909 7.734538 AACAAAAACTCTATCAACACGTTTG 57.265 32.000 0.00 0.00 0.00 2.93
492 3915 7.411486 TCCCAAAACAAAAACTCTATCAACA 57.589 32.000 0.00 0.00 0.00 3.33
496 3919 7.489160 ACAGTTCCCAAAACAAAAACTCTATC 58.511 34.615 0.00 0.00 0.00 2.08
501 3924 6.599356 AGTACAGTTCCCAAAACAAAAACT 57.401 33.333 0.00 0.00 0.00 2.66
507 3930 7.941431 TCTAAAAAGTACAGTTCCCAAAACA 57.059 32.000 0.00 0.00 0.00 2.83
529 3952 9.178758 AGACAAAAAGACAGAACAAAACTATCT 57.821 29.630 0.00 0.00 0.00 1.98
533 3956 8.887036 AAAAGACAAAAAGACAGAACAAAACT 57.113 26.923 0.00 0.00 0.00 2.66
612 4044 8.006741 AGAATTTATAAACGCTTGCAACTTTG 57.993 30.769 0.00 0.00 0.00 2.77
769 4244 8.415950 TCTCACTAGGGATTTTGCATTTTTAA 57.584 30.769 0.00 0.00 0.00 1.52
833 4308 5.632034 AATAAGGACATACAAGGACCTCC 57.368 43.478 0.00 0.00 0.00 4.30
834 4309 6.415573 ACAAATAAGGACATACAAGGACCTC 58.584 40.000 0.00 0.00 0.00 3.85
835 4310 6.388619 ACAAATAAGGACATACAAGGACCT 57.611 37.500 0.00 0.00 0.00 3.85
836 4311 7.462571 AAACAAATAAGGACATACAAGGACC 57.537 36.000 0.00 0.00 0.00 4.46
841 4316 7.175293 ACCGCTAAAACAAATAAGGACATACAA 59.825 33.333 0.00 0.00 0.00 2.41
843 4318 7.080353 ACCGCTAAAACAAATAAGGACATAC 57.920 36.000 0.00 0.00 0.00 2.39
844 4319 7.496591 CCTACCGCTAAAACAAATAAGGACATA 59.503 37.037 0.00 0.00 0.00 2.29
845 4320 6.317893 CCTACCGCTAAAACAAATAAGGACAT 59.682 38.462 0.00 0.00 0.00 3.06
847 4322 5.645067 ACCTACCGCTAAAACAAATAAGGAC 59.355 40.000 0.00 0.00 0.00 3.85
848 4323 5.807909 ACCTACCGCTAAAACAAATAAGGA 58.192 37.500 0.00 0.00 0.00 3.36
849 4324 6.259387 CCTACCTACCGCTAAAACAAATAAGG 59.741 42.308 0.00 0.00 0.00 2.69
850 4325 6.820152 ACCTACCTACCGCTAAAACAAATAAG 59.180 38.462 0.00 0.00 0.00 1.73
851 4326 6.710278 ACCTACCTACCGCTAAAACAAATAA 58.290 36.000 0.00 0.00 0.00 1.40
853 4328 5.169992 ACCTACCTACCGCTAAAACAAAT 57.830 39.130 0.00 0.00 0.00 2.32
896 4543 1.762370 TCCACTGTTGTGCTTGAGAGA 59.238 47.619 0.00 0.00 42.54 3.10
897 4544 1.869767 GTCCACTGTTGTGCTTGAGAG 59.130 52.381 0.00 0.00 42.54 3.20
898 4545 1.475034 GGTCCACTGTTGTGCTTGAGA 60.475 52.381 0.00 0.00 42.54 3.27
899 4546 0.947244 GGTCCACTGTTGTGCTTGAG 59.053 55.000 0.00 0.00 42.54 3.02
921 4568 1.283029 TGGGCCCAAATCTCTTCTCTG 59.717 52.381 26.33 0.00 0.00 3.35
948 4595 1.372501 TCCTTCCTTCCTTCCTTGGG 58.627 55.000 0.00 0.00 0.00 4.12
950 4597 2.644798 TCCTTCCTTCCTTCCTTCCTTG 59.355 50.000 0.00 0.00 0.00 3.61
951 4598 3.005529 TCCTTCCTTCCTTCCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
952 4599 2.743131 TCCTTCCTTCCTTCCTTCCT 57.257 50.000 0.00 0.00 0.00 3.36
953 4600 2.025793 CCTTCCTTCCTTCCTTCCTTCC 60.026 54.545 0.00 0.00 0.00 3.46
954 4601 2.913617 TCCTTCCTTCCTTCCTTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
955 4602 3.005529 TCCTTCCTTCCTTCCTTCCTT 57.994 47.619 0.00 0.00 0.00 3.36
956 4603 2.743131 TCCTTCCTTCCTTCCTTCCT 57.257 50.000 0.00 0.00 0.00 3.36
957 4604 2.025793 CCTTCCTTCCTTCCTTCCTTCC 60.026 54.545 0.00 0.00 0.00 3.46
958 4605 2.913617 TCCTTCCTTCCTTCCTTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
1004 4657 2.195567 TTGGTTGTGGCTGCTGCTC 61.196 57.895 15.64 9.50 39.59 4.26
1014 4667 1.354368 AGGTGGATAGGGTTGGTTGTG 59.646 52.381 0.00 0.00 0.00 3.33
1015 4668 1.633945 GAGGTGGATAGGGTTGGTTGT 59.366 52.381 0.00 0.00 0.00 3.32
1032 4692 2.663566 TGACCTGCAGAGTGAGAGG 58.336 57.895 17.39 0.00 0.00 3.69
1068 4751 2.503382 GGTCTCCATCGCTCCCTCC 61.503 68.421 0.00 0.00 0.00 4.30
1069 4752 1.456705 AGGTCTCCATCGCTCCCTC 60.457 63.158 0.00 0.00 0.00 4.30
1070 4753 1.456705 GAGGTCTCCATCGCTCCCT 60.457 63.158 0.00 0.00 0.00 4.20
1071 4754 3.133946 GAGGTCTCCATCGCTCCC 58.866 66.667 0.00 0.00 0.00 4.30
1190 4873 7.455331 AGAAAGAAAGAAAGATTTGCGTTTG 57.545 32.000 0.00 0.00 0.00 2.93
1191 4874 8.479313 AAAGAAAGAAAGAAAGATTTGCGTTT 57.521 26.923 0.00 0.00 0.00 3.60
1192 4875 7.976175 AGAAAGAAAGAAAGAAAGATTTGCGTT 59.024 29.630 0.00 0.00 0.00 4.84
1194 4877 7.920908 AGAAAGAAAGAAAGAAAGATTTGCG 57.079 32.000 0.00 0.00 0.00 4.85
1229 4927 4.649692 CGGAGGAGGATTGATTCATTCAT 58.350 43.478 9.96 3.64 33.34 2.57
1230 4928 4.077300 CGGAGGAGGATTGATTCATTCA 57.923 45.455 9.96 0.00 0.00 2.57
1280 4982 2.838386 CGTGAGCCTGATTGATTTGG 57.162 50.000 0.00 0.00 0.00 3.28
1334 5041 4.421479 CTTGCGAGGACGGCGAGT 62.421 66.667 16.62 0.00 40.15 4.18
1341 5048 0.603975 AAGAAGTGCCTTGCGAGGAC 60.604 55.000 25.25 17.59 46.74 3.85
1370 5084 0.685785 TGCAGGGAGAGCAGAGTAGG 60.686 60.000 0.00 0.00 37.02 3.18
1371 5085 1.412079 ATGCAGGGAGAGCAGAGTAG 58.588 55.000 0.00 0.00 46.36 2.57
1372 5086 1.759445 GAATGCAGGGAGAGCAGAGTA 59.241 52.381 0.00 0.00 46.36 2.59
1438 5159 1.674962 GGTGGAGCAGAGCAATCAATC 59.325 52.381 0.00 0.00 0.00 2.67
1439 5160 1.005097 TGGTGGAGCAGAGCAATCAAT 59.995 47.619 0.00 0.00 0.00 2.57
1440 5161 0.401356 TGGTGGAGCAGAGCAATCAA 59.599 50.000 0.00 0.00 0.00 2.57
1442 5163 2.777969 CTGGTGGAGCAGAGCAATC 58.222 57.895 0.00 0.00 0.00 2.67
1472 5227 2.525629 TGGACTCCGGCTCCAACA 60.526 61.111 16.24 0.00 34.70 3.33
1484 5239 2.040278 CCCCTCTCCAGCTGGACT 59.960 66.667 32.00 0.00 39.78 3.85
1618 5373 0.329596 GTTGGGGCAGTGATTCTCCT 59.670 55.000 0.00 0.00 0.00 3.69
1619 5374 0.681243 GGTTGGGGCAGTGATTCTCC 60.681 60.000 0.00 0.00 0.00 3.71
1620 5375 0.038166 TGGTTGGGGCAGTGATTCTC 59.962 55.000 0.00 0.00 0.00 2.87
1621 5376 0.706433 ATGGTTGGGGCAGTGATTCT 59.294 50.000 0.00 0.00 0.00 2.40
1624 5379 0.033796 CTGATGGTTGGGGCAGTGAT 60.034 55.000 0.00 0.00 0.00 3.06
1625 5380 1.379916 CTGATGGTTGGGGCAGTGA 59.620 57.895 0.00 0.00 0.00 3.41
1626 5381 2.345760 GCTGATGGTTGGGGCAGTG 61.346 63.158 0.00 0.00 0.00 3.66
1627 5382 2.036256 GCTGATGGTTGGGGCAGT 59.964 61.111 0.00 0.00 0.00 4.40
1630 5385 0.108041 CAAATGCTGATGGTTGGGGC 60.108 55.000 0.00 0.00 0.00 5.80
1633 5388 3.446507 GGCAAATGCTGATGGTTGG 57.553 52.632 5.25 0.00 41.70 3.77
1651 5417 4.761739 AGATTGGTTATTATGGCCATGACG 59.238 41.667 29.04 0.00 31.71 4.35
1653 5419 8.954834 ATTAAGATTGGTTATTATGGCCATGA 57.045 30.769 29.04 21.46 31.71 3.07
1656 5422 9.829507 CAAAATTAAGATTGGTTATTATGGCCA 57.170 29.630 8.56 8.56 0.00 5.36
1657 5423 9.830975 ACAAAATTAAGATTGGTTATTATGGCC 57.169 29.630 0.00 0.00 0.00 5.36
1685 5453 4.081309 GGCAAGGTTCAGTGTATACAGGTA 60.081 45.833 5.62 0.00 0.00 3.08
1686 5454 3.307480 GGCAAGGTTCAGTGTATACAGGT 60.307 47.826 5.62 0.00 0.00 4.00
1687 5455 3.270877 GGCAAGGTTCAGTGTATACAGG 58.729 50.000 5.62 1.84 0.00 4.00
1688 5456 3.937814 TGGCAAGGTTCAGTGTATACAG 58.062 45.455 5.62 0.00 0.00 2.74
1689 5457 4.568072 ATGGCAAGGTTCAGTGTATACA 57.432 40.909 0.08 0.08 0.00 2.29
1690 5458 4.335594 GGAATGGCAAGGTTCAGTGTATAC 59.664 45.833 0.00 0.00 0.00 1.47
1692 5460 3.010584 AGGAATGGCAAGGTTCAGTGTAT 59.989 43.478 0.00 0.00 0.00 2.29
1693 5461 2.375174 AGGAATGGCAAGGTTCAGTGTA 59.625 45.455 0.00 0.00 0.00 2.90
1695 5463 1.815003 GAGGAATGGCAAGGTTCAGTG 59.185 52.381 0.00 0.00 0.00 3.66
1696 5464 1.707427 AGAGGAATGGCAAGGTTCAGT 59.293 47.619 0.00 0.00 0.00 3.41
1697 5465 2.089980 CAGAGGAATGGCAAGGTTCAG 58.910 52.381 0.00 0.00 0.00 3.02
1700 5468 2.519013 GAACAGAGGAATGGCAAGGTT 58.481 47.619 0.00 0.00 0.00 3.50
1703 5471 2.089980 CAGGAACAGAGGAATGGCAAG 58.910 52.381 0.00 0.00 0.00 4.01
1704 5472 1.887956 GCAGGAACAGAGGAATGGCAA 60.888 52.381 0.00 0.00 0.00 4.52
1706 5474 1.034292 GGCAGGAACAGAGGAATGGC 61.034 60.000 0.00 0.00 0.00 4.40
1707 5475 0.622665 AGGCAGGAACAGAGGAATGG 59.377 55.000 0.00 0.00 0.00 3.16
1709 5477 0.034670 GCAGGCAGGAACAGAGGAAT 60.035 55.000 0.00 0.00 0.00 3.01
1710 5478 1.376466 GCAGGCAGGAACAGAGGAA 59.624 57.895 0.00 0.00 0.00 3.36
1713 5481 1.376942 CAGGCAGGCAGGAACAGAG 60.377 63.158 0.00 0.00 0.00 3.35
1822 5590 1.807495 ATAGCTCGTAGCCGGCCTTC 61.807 60.000 26.15 13.04 43.77 3.46
1831 5599 1.607628 ACCTTGCGGTATAGCTCGTAG 59.392 52.381 0.00 0.00 43.29 3.51
1859 5644 1.218316 GGGAAGTAGTCGGCACCAG 59.782 63.158 0.00 0.00 0.00 4.00
1862 5647 1.270678 ACAAAGGGAAGTAGTCGGCAC 60.271 52.381 0.00 0.00 0.00 5.01
1871 5666 0.106918 TCAACGGCACAAAGGGAAGT 60.107 50.000 0.00 0.00 0.00 3.01
1885 5680 3.059884 AGCGGCTCATGTATATTCAACG 58.940 45.455 0.00 0.00 0.00 4.10
1886 5681 4.376413 CGAAGCGGCTCATGTATATTCAAC 60.376 45.833 1.45 0.00 0.00 3.18
1888 5683 3.317150 CGAAGCGGCTCATGTATATTCA 58.683 45.455 1.45 0.00 0.00 2.57
1889 5684 3.980238 CGAAGCGGCTCATGTATATTC 57.020 47.619 1.45 0.00 0.00 1.75
1906 5701 0.665835 AACAAACTGGCGATTGCGAA 59.334 45.000 0.00 0.00 44.10 4.70
1907 5702 1.514003 TAACAAACTGGCGATTGCGA 58.486 45.000 0.00 0.00 44.10 5.10
1908 5703 2.176369 CATAACAAACTGGCGATTGCG 58.824 47.619 0.00 0.00 44.10 4.85
1914 5709 1.685302 GCACACATAACAAACTGGCG 58.315 50.000 0.00 0.00 0.00 5.69
1915 5710 1.685302 CGCACACATAACAAACTGGC 58.315 50.000 0.00 0.00 0.00 4.85
1916 5711 1.001924 TGCGCACACATAACAAACTGG 60.002 47.619 5.66 0.00 0.00 4.00
1933 5728 1.637934 CATCATACAGGCGTGTGCG 59.362 57.895 21.78 12.26 44.10 5.34
1934 5729 1.353103 GCATCATACAGGCGTGTGC 59.647 57.895 21.78 12.24 37.52 4.57
1939 5734 3.657634 AGATAAGTGCATCATACAGGCG 58.342 45.455 0.00 0.00 0.00 5.52
1940 5735 5.406780 GTGTAGATAAGTGCATCATACAGGC 59.593 44.000 0.00 0.00 0.00 4.85
1948 5743 5.149054 GCAGTTGTGTAGATAAGTGCATC 57.851 43.478 19.94 0.00 46.98 3.91
1954 5749 5.808042 AGCATTGCAGTTGTGTAGATAAG 57.192 39.130 11.91 0.00 0.00 1.73
2005 5803 0.769873 ATGGATCCCAGCAGACCATC 59.230 55.000 9.90 0.00 36.78 3.51
2021 5819 4.247267 TCAAAAGAGAAGCAGCAAATGG 57.753 40.909 0.00 0.00 0.00 3.16
2161 6053 0.533755 AACAGGTGTGTGCTGCTCTC 60.534 55.000 0.00 0.00 36.84 3.20
2245 6137 4.949856 ACTTTCCCAGTACATTTGCATAGG 59.050 41.667 0.00 0.00 31.97 2.57
2257 6149 0.403655 TGGCATGCACTTTCCCAGTA 59.596 50.000 21.36 0.00 32.76 2.74
2259 6151 0.896940 ACTGGCATGCACTTTCCCAG 60.897 55.000 21.36 17.03 46.53 4.45
2347 6246 6.315393 GTGGTACTGATATGTGGTAAGGTTTG 59.685 42.308 0.00 0.00 0.00 2.93
2401 6304 6.515832 ACAAAAGAGAAACTGGCCAATTTAG 58.484 36.000 13.00 0.00 0.00 1.85
2404 6307 6.462909 CCTTACAAAAGAGAAACTGGCCAATT 60.463 38.462 7.01 0.00 34.37 2.32
2437 6346 4.583489 TCAAGTTACTCGGAAGTCTGAACT 59.417 41.667 0.00 0.00 36.92 3.01
2438 6347 4.868067 TCAAGTTACTCGGAAGTCTGAAC 58.132 43.478 0.00 0.00 36.92 3.18
2439 6348 5.010719 ACATCAAGTTACTCGGAAGTCTGAA 59.989 40.000 0.00 0.00 36.92 3.02
2440 6349 4.523173 ACATCAAGTTACTCGGAAGTCTGA 59.477 41.667 0.00 0.00 36.92 3.27
2441 6350 4.623167 CACATCAAGTTACTCGGAAGTCTG 59.377 45.833 0.00 0.00 36.92 3.51
2442 6351 4.810790 CACATCAAGTTACTCGGAAGTCT 58.189 43.478 0.00 0.00 36.92 3.24
2443 6352 3.368236 GCACATCAAGTTACTCGGAAGTC 59.632 47.826 0.00 0.00 36.92 3.01
2444 6353 3.326747 GCACATCAAGTTACTCGGAAGT 58.673 45.455 0.00 0.00 39.66 3.01
2445 6354 2.673368 GGCACATCAAGTTACTCGGAAG 59.327 50.000 0.00 0.00 0.00 3.46
2449 6358 5.856126 TTAAAGGCACATCAAGTTACTCG 57.144 39.130 0.00 0.00 0.00 4.18
2484 6393 2.556189 CGAGGAGGAGATGTGTATCAGG 59.444 54.545 0.00 0.00 35.70 3.86
2487 6396 2.952978 ACACGAGGAGGAGATGTGTATC 59.047 50.000 0.00 0.00 41.61 2.24
2488 6397 2.952978 GACACGAGGAGGAGATGTGTAT 59.047 50.000 0.00 0.00 43.28 2.29
2489 6398 2.026169 AGACACGAGGAGGAGATGTGTA 60.026 50.000 0.00 0.00 43.28 2.90
2490 6399 1.178276 GACACGAGGAGGAGATGTGT 58.822 55.000 0.00 0.00 45.68 3.72
2491 6400 1.468985 AGACACGAGGAGGAGATGTG 58.531 55.000 0.00 0.00 36.64 3.21
2492 6401 1.821753 CAAGACACGAGGAGGAGATGT 59.178 52.381 0.00 0.00 0.00 3.06
2493 6402 1.821753 ACAAGACACGAGGAGGAGATG 59.178 52.381 0.00 0.00 0.00 2.90
2494 6403 2.223803 ACAAGACACGAGGAGGAGAT 57.776 50.000 0.00 0.00 0.00 2.75
2495 6404 1.996798 AACAAGACACGAGGAGGAGA 58.003 50.000 0.00 0.00 0.00 3.71
2496 6405 2.224066 ACAAACAAGACACGAGGAGGAG 60.224 50.000 0.00 0.00 0.00 3.69
2497 6406 1.760613 ACAAACAAGACACGAGGAGGA 59.239 47.619 0.00 0.00 0.00 3.71
2498 6407 2.240493 ACAAACAAGACACGAGGAGG 57.760 50.000 0.00 0.00 0.00 4.30
2499 6408 3.458189 AGAACAAACAAGACACGAGGAG 58.542 45.455 0.00 0.00 0.00 3.69
2500 6409 3.536956 AGAACAAACAAGACACGAGGA 57.463 42.857 0.00 0.00 0.00 3.71
2530 6439 4.023291 GGATTACCCTGCATCTGGAAAAA 58.977 43.478 4.24 0.00 0.00 1.94
2545 6454 2.500098 GGCCAAAAAGGAAGGGATTACC 59.500 50.000 0.00 0.00 41.22 2.85
2546 6455 3.169908 TGGCCAAAAAGGAAGGGATTAC 58.830 45.455 0.61 0.00 41.22 1.89
2548 6457 2.414250 TGGCCAAAAAGGAAGGGATT 57.586 45.000 0.61 0.00 41.22 3.01
2563 6493 7.934120 ACTACTAAATCAGATAAACAGATGGCC 59.066 37.037 0.00 0.00 0.00 5.36
2611 6544 9.804758 GTATAAGGTATGCAGAACATATACTCC 57.195 37.037 19.42 0.00 43.11 3.85
2618 6551 6.247229 TGTGGTATAAGGTATGCAGAACAT 57.753 37.500 0.00 0.00 43.18 2.71
2620 6553 7.568199 AATTGTGGTATAAGGTATGCAGAAC 57.432 36.000 0.00 0.00 0.00 3.01
2628 6561 8.872134 TGATCCGATTAATTGTGGTATAAGGTA 58.128 33.333 1.99 0.00 0.00 3.08
2648 6581 6.183360 CCAATGTTTTGCACTAAATTGATCCG 60.183 38.462 10.39 0.00 0.00 4.18
2680 6613 0.465460 TGGTCAGCAGTGAACCAACC 60.465 55.000 9.32 2.79 40.01 3.77
2681 6614 1.388547 TTGGTCAGCAGTGAACCAAC 58.611 50.000 16.71 0.00 40.01 3.77
2684 6617 0.312102 GCTTTGGTCAGCAGTGAACC 59.688 55.000 0.00 0.00 40.01 3.62
2702 6635 5.582689 AATCTAACCTTGCTTGGTAATGC 57.417 39.130 1.82 0.00 39.83 3.56
2721 6655 5.193679 ACAGCCAGGTAGGAAACATAAATC 58.806 41.667 0.00 0.00 41.22 2.17
2865 7160 1.152839 CCACAAACGGGTTCCTGGT 60.153 57.895 2.61 0.00 0.00 4.00
2867 7162 0.889186 CCTCCACAAACGGGTTCCTG 60.889 60.000 0.00 0.00 0.00 3.86
2889 7184 0.820871 ACTGATCGCCAGAGAAGTCC 59.179 55.000 10.86 0.00 45.78 3.85
2970 7270 0.703488 TGGTGAATGGCATCCTTCCA 59.297 50.000 0.00 5.05 38.09 3.53
2975 7275 0.458669 CTTGCTGGTGAATGGCATCC 59.541 55.000 0.00 0.00 35.84 3.51
3011 7315 7.318893 GGTTCCTACTTCTACATACGACTTTT 58.681 38.462 0.00 0.00 0.00 2.27
3016 7323 5.121380 AGGGTTCCTACTTCTACATACGA 57.879 43.478 0.00 0.00 28.47 3.43
3032 7339 6.599244 TCACATCAATGAAATGTCTAGGGTTC 59.401 38.462 0.00 0.00 35.19 3.62
3036 7343 8.217131 TCAATCACATCAATGAAATGTCTAGG 57.783 34.615 0.00 0.00 35.19 3.02
3055 7362 5.879763 TCCTGAATTTTCCAGACTCAATCA 58.120 37.500 0.00 0.00 33.65 2.57
3071 7378 5.624159 TGAAGACACAACTGAATCCTGAAT 58.376 37.500 0.00 0.00 0.00 2.57
3093 7400 6.203530 ACCAATAATCTCATCAACGCTACATG 59.796 38.462 0.00 0.00 0.00 3.21
3102 7409 7.286087 CCTTCATCCAACCAATAATCTCATCAA 59.714 37.037 0.00 0.00 0.00 2.57
3133 7440 8.476064 TCTTATTAGCATTTCATGGGCATTTA 57.524 30.769 0.00 0.00 0.00 1.40
3139 7446 8.636213 ACATTCTTCTTATTAGCATTTCATGGG 58.364 33.333 0.00 0.00 0.00 4.00
3163 7470 3.133183 TGCACTTCACCTTGTACAGTACA 59.867 43.478 9.51 9.51 36.79 2.90
3164 7471 3.724374 TGCACTTCACCTTGTACAGTAC 58.276 45.455 3.49 3.49 0.00 2.73
3165 7472 4.202315 ACATGCACTTCACCTTGTACAGTA 60.202 41.667 0.00 0.00 0.00 2.74
3166 7473 3.141398 CATGCACTTCACCTTGTACAGT 58.859 45.455 0.00 0.00 0.00 3.55
3167 7474 3.141398 ACATGCACTTCACCTTGTACAG 58.859 45.455 0.00 0.00 0.00 2.74
3289 7613 0.321919 CTGGCAAGTGGAAGCAGCTA 60.322 55.000 0.00 0.00 0.00 3.32
3360 7687 1.937546 GCGGCCAATTCCACCTTCAG 61.938 60.000 2.24 0.00 0.00 3.02
3370 7697 4.669809 TTCCGGTGGCGGCCAATT 62.670 61.111 25.70 0.00 34.18 2.32
3383 7710 1.262950 TGAACGATTGTTGCAGTTCCG 59.737 47.619 2.13 4.45 41.43 4.30
3399 7726 3.878086 TTTGCTGACGACTGAATGAAC 57.122 42.857 0.00 0.00 0.00 3.18
3411 7750 1.471684 CTCTGCCCTTCATTTGCTGAC 59.528 52.381 0.00 0.00 32.17 3.51
3415 7754 0.822164 ATGCTCTGCCCTTCATTTGC 59.178 50.000 0.00 0.00 0.00 3.68
3421 7761 0.822164 ATTGCAATGCTCTGCCCTTC 59.178 50.000 12.09 0.00 41.90 3.46
3447 7787 1.142060 TCGGTCCATGGTTCTTGTTGT 59.858 47.619 12.58 0.00 0.00 3.32
3457 7797 1.382522 CAAGATGGTTCGGTCCATGG 58.617 55.000 4.97 4.97 46.72 3.66
3495 7879 5.319140 CATGAGATGGAAAGCAACATTCA 57.681 39.130 0.00 0.00 0.00 2.57
3531 7916 4.488126 TTTGCTCAGATTTCGTTCCAAG 57.512 40.909 0.00 0.00 0.00 3.61
3535 7920 7.460637 CGAAATGATTTTGCTCAGATTTCGTTC 60.461 37.037 13.71 0.00 39.93 3.95
3541 7926 4.159135 AGCCGAAATGATTTTGCTCAGATT 59.841 37.500 9.25 0.00 0.00 2.40
3542 7927 3.698040 AGCCGAAATGATTTTGCTCAGAT 59.302 39.130 9.25 0.00 0.00 2.90
3543 7928 3.084039 AGCCGAAATGATTTTGCTCAGA 58.916 40.909 9.25 0.00 0.00 3.27
3544 7929 3.432782 GAGCCGAAATGATTTTGCTCAG 58.567 45.455 25.40 6.63 42.49 3.35
3545 7930 2.164219 GGAGCCGAAATGATTTTGCTCA 59.836 45.455 28.46 0.00 43.63 4.26
3546 7931 2.164219 TGGAGCCGAAATGATTTTGCTC 59.836 45.455 23.72 23.72 42.34 4.26
3548 7933 2.094545 AGTGGAGCCGAAATGATTTTGC 60.095 45.455 0.00 2.89 0.00 3.68
3755 8184 6.147164 TGTTCCACATAATCACGAGTTCTTTC 59.853 38.462 0.00 0.00 0.00 2.62
3765 8194 3.262420 ACTCGCTGTTCCACATAATCAC 58.738 45.455 0.00 0.00 0.00 3.06
3782 8211 9.321562 ACTGGTTAATTTGTGGTATAATACTCG 57.678 33.333 0.00 0.00 0.00 4.18
3871 8300 1.810030 CTCTCGGTAAACGCAGGGC 60.810 63.158 0.00 0.00 43.86 5.19
3872 8301 1.153628 CCTCTCGGTAAACGCAGGG 60.154 63.158 0.00 0.00 43.86 4.45
3873 8302 0.179134 CTCCTCTCGGTAAACGCAGG 60.179 60.000 0.00 0.00 43.86 4.85
3874 8303 0.809385 TCTCCTCTCGGTAAACGCAG 59.191 55.000 0.00 0.00 43.86 5.18
3880 8309 1.030488 CAGCGGTCTCCTCTCGGTAA 61.030 60.000 0.00 0.00 33.23 2.85
3887 8316 1.531578 GTTTTGTTCAGCGGTCTCCTC 59.468 52.381 0.00 0.00 0.00 3.71
3972 8401 7.363094 GCCTGTCACACTTCTAATAGTAGAACT 60.363 40.741 8.52 0.00 40.68 3.01
3973 8402 6.752815 GCCTGTCACACTTCTAATAGTAGAAC 59.247 42.308 8.52 0.14 40.68 3.01
3974 8403 6.127423 GGCCTGTCACACTTCTAATAGTAGAA 60.127 42.308 11.83 11.83 42.82 2.10
3975 8404 5.360144 GGCCTGTCACACTTCTAATAGTAGA 59.640 44.000 0.00 0.00 34.39 2.59
3976 8405 5.127194 TGGCCTGTCACACTTCTAATAGTAG 59.873 44.000 3.32 0.00 0.00 2.57
3977 8406 5.020795 TGGCCTGTCACACTTCTAATAGTA 58.979 41.667 3.32 0.00 0.00 1.82
3978 8407 3.838317 TGGCCTGTCACACTTCTAATAGT 59.162 43.478 3.32 0.00 0.00 2.12
3979 8408 4.471904 TGGCCTGTCACACTTCTAATAG 57.528 45.455 3.32 0.00 0.00 1.73
4013 8442 3.593096 TGCTTACAGTCTGATTGCTGAG 58.407 45.455 6.91 0.00 36.62 3.35
4029 8458 6.959639 ATTTTCTTCAGGACTTGTTGCTTA 57.040 33.333 0.00 0.00 0.00 3.09
4036 8465 3.366374 GCCCGAATTTTCTTCAGGACTTG 60.366 47.826 0.00 0.00 0.00 3.16
4037 8466 2.820197 GCCCGAATTTTCTTCAGGACTT 59.180 45.455 0.00 0.00 0.00 3.01
4038 8467 2.224769 TGCCCGAATTTTCTTCAGGACT 60.225 45.455 0.00 0.00 0.00 3.85
4039 8468 2.095212 GTGCCCGAATTTTCTTCAGGAC 60.095 50.000 0.00 0.00 0.00 3.85
4040 8469 2.159382 GTGCCCGAATTTTCTTCAGGA 58.841 47.619 0.00 0.00 0.00 3.86
4041 8470 1.202348 GGTGCCCGAATTTTCTTCAGG 59.798 52.381 0.00 0.00 0.00 3.86
4042 8471 2.095059 CAGGTGCCCGAATTTTCTTCAG 60.095 50.000 0.00 0.00 0.00 3.02
4043 8472 1.885887 CAGGTGCCCGAATTTTCTTCA 59.114 47.619 0.00 0.00 0.00 3.02
4044 8473 1.402852 GCAGGTGCCCGAATTTTCTTC 60.403 52.381 0.00 0.00 34.31 2.87
4045 8474 0.603065 GCAGGTGCCCGAATTTTCTT 59.397 50.000 0.00 0.00 34.31 2.52
4046 8475 0.251341 AGCAGGTGCCCGAATTTTCT 60.251 50.000 0.00 0.00 43.38 2.52
4054 8483 3.315142 TAGCAGAAGCAGGTGCCCG 62.315 63.158 0.00 0.00 45.49 6.13
4070 8499 3.487711 CGCTAGTACCTGAGCTTGTGTAG 60.488 52.174 9.57 0.00 36.50 2.74
4088 8517 2.412323 CCTCTACCGTGGTGCGCTA 61.412 63.158 9.73 0.00 39.71 4.26
4089 8518 3.760035 CCTCTACCGTGGTGCGCT 61.760 66.667 9.73 0.00 39.71 5.92
4114 8543 1.271379 CCCCTCAAGTTTGTCATCCGT 60.271 52.381 0.00 0.00 0.00 4.69
4124 8553 1.372501 AGCCATACACCCCTCAAGTT 58.627 50.000 0.00 0.00 0.00 2.66
4135 8564 2.591923 TGCTGAAACCAAAGCCATACA 58.408 42.857 0.00 0.00 38.71 2.29
4142 8571 1.666888 GGACGCATGCTGAAACCAAAG 60.667 52.381 17.13 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.