Multiple sequence alignment - TraesCS6D01G405500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G405500 chr6D 100.000 3718 0 0 1 3718 472684564 472688281 0.000000e+00 6866.0
1 TraesCS6D01G405500 chr6D 82.477 1090 149 21 2488 3561 472824629 472823566 0.000000e+00 917.0
2 TraesCS6D01G405500 chr6D 78.613 519 97 11 21 534 16177229 16176720 7.700000e-87 331.0
3 TraesCS6D01G405500 chr6B 85.424 1523 127 40 289 1774 717942650 717941186 0.000000e+00 1495.0
4 TraesCS6D01G405500 chr6B 87.121 396 39 6 2374 2757 717941190 717940795 4.410000e-119 438.0
5 TraesCS6D01G405500 chr6B 82.916 439 31 11 3200 3636 717931921 717931525 4.570000e-94 355.0
6 TraesCS6D01G405500 chr6B 78.119 521 96 15 21 534 27917779 27917270 7.750000e-82 315.0
7 TraesCS6D01G405500 chr6B 87.795 254 18 8 2961 3202 717940543 717940291 6.080000e-73 285.0
8 TraesCS6D01G405500 chr6A 88.584 1095 89 23 945 2023 616940782 616941856 0.000000e+00 1297.0
9 TraesCS6D01G405500 chr6A 89.242 660 45 12 2065 2699 616941867 616942525 0.000000e+00 802.0
10 TraesCS6D01G405500 chr6A 86.749 483 35 11 3152 3633 616942540 616942994 9.210000e-141 510.0
11 TraesCS6D01G405500 chr2D 79.823 451 77 8 79 527 484043971 484044409 2.160000e-82 316.0
12 TraesCS6D01G405500 chr2D 80.731 301 53 5 90 387 629842478 629842180 2.890000e-56 230.0
13 TraesCS6D01G405500 chr5A 78.509 456 83 11 81 534 423666398 423666840 6.080000e-73 285.0
14 TraesCS6D01G405500 chr7D 78.366 453 81 13 87 534 13785480 13785920 1.020000e-70 278.0
15 TraesCS6D01G405500 chr7D 77.753 454 83 15 87 534 13962934 13963375 2.850000e-66 263.0
16 TraesCS6D01G405500 chr7D 77.556 450 84 13 90 534 48249315 48248878 4.770000e-64 255.0
17 TraesCS6D01G405500 chr4D 77.483 453 89 7 79 528 504526335 504525893 3.680000e-65 259.0
18 TraesCS6D01G405500 chr2B 76.230 488 91 18 41 517 786505336 786505809 6.210000e-58 235.0
19 TraesCS6D01G405500 chr7A 77.871 357 76 3 49 402 509956597 509956953 6.250000e-53 219.0
20 TraesCS6D01G405500 chr7A 100.000 29 0 0 724 752 75159757 75159729 2.000000e-03 54.7
21 TraesCS6D01G405500 chr4A 77.112 367 64 10 142 498 185437995 185438351 1.050000e-45 195.0
22 TraesCS6D01G405500 chr4A 86.207 87 12 0 3632 3718 89436489 89436403 1.100000e-15 95.3
23 TraesCS6D01G405500 chr3A 77.328 247 49 7 141 382 737816179 737815935 5.010000e-29 139.0
24 TraesCS6D01G405500 chr1A 75.833 240 48 6 290 528 27192967 27193197 3.030000e-21 113.0
25 TraesCS6D01G405500 chr2A 92.727 55 3 1 717 770 633531678 633531624 1.110000e-10 78.7
26 TraesCS6D01G405500 chr7B 100.000 29 0 0 724 752 11837482 11837454 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G405500 chr6D 472684564 472688281 3717 False 6866.000000 6866 100.000000 1 3718 1 chr6D.!!$F1 3717
1 TraesCS6D01G405500 chr6D 472823566 472824629 1063 True 917.000000 917 82.477000 2488 3561 1 chr6D.!!$R2 1073
2 TraesCS6D01G405500 chr6D 16176720 16177229 509 True 331.000000 331 78.613000 21 534 1 chr6D.!!$R1 513
3 TraesCS6D01G405500 chr6B 717940291 717942650 2359 True 739.333333 1495 86.780000 289 3202 3 chr6B.!!$R3 2913
4 TraesCS6D01G405500 chr6B 27917270 27917779 509 True 315.000000 315 78.119000 21 534 1 chr6B.!!$R1 513
5 TraesCS6D01G405500 chr6A 616940782 616942994 2212 False 869.666667 1297 88.191667 945 3633 3 chr6A.!!$F1 2688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 420 0.040958 GAAGTGCTTGTCGCCAACAG 60.041 55.0 0.0 0.0 39.58 3.16 F
1242 1318 0.034476 GGGACCGTTTCGAGGACTTT 59.966 55.0 0.0 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1863 0.036671 GACTCCGGTTTCCAATCCGT 60.037 55.0 0.0 0.0 44.51 4.69 R
2905 3443 0.179234 TGGATTGTGTGTGTGGACGT 59.821 50.0 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.149101 AGGTGATGGTTCCTTGTGGT 58.851 50.000 0.00 0.00 34.23 4.16
56 57 0.321564 CTTGTGGTGGCGGATCTTGA 60.322 55.000 0.00 0.00 0.00 3.02
69 71 2.242196 GGATCTTGAATCCCACTCCCAA 59.758 50.000 0.00 0.00 32.09 4.12
70 72 3.309121 GGATCTTGAATCCCACTCCCAAA 60.309 47.826 0.00 0.00 32.09 3.28
75 77 2.027385 GAATCCCACTCCCAAAGATGC 58.973 52.381 0.00 0.00 0.00 3.91
76 78 0.259938 ATCCCACTCCCAAAGATGCC 59.740 55.000 0.00 0.00 0.00 4.40
85 87 0.606401 CCAAAGATGCCACAGGACGT 60.606 55.000 0.00 0.00 0.00 4.34
92 94 4.602259 CCACAGGACGTGCGTGGT 62.602 66.667 28.97 16.24 44.91 4.16
134 136 2.509336 CGACACCTGATGCGGGAC 60.509 66.667 0.00 0.00 33.36 4.46
136 138 2.927856 ACACCTGATGCGGGACCA 60.928 61.111 0.00 0.00 33.36 4.02
167 171 2.162754 CCGTTGTATGGGCGACGAC 61.163 63.158 0.00 0.00 46.10 4.34
170 174 0.389426 GTTGTATGGGCGACGACAGT 60.389 55.000 1.63 0.00 32.32 3.55
203 208 2.904131 GGAGCTCCCTGTAGCACC 59.096 66.667 23.19 0.00 45.30 5.01
212 217 1.672854 CCTGTAGCACCCGGAATCGA 61.673 60.000 0.73 0.00 39.00 3.59
216 221 4.467084 GCACCCGGAATCGAGGCA 62.467 66.667 0.73 0.00 39.00 4.75
218 223 2.683933 ACCCGGAATCGAGGCAGT 60.684 61.111 0.73 0.00 39.00 4.40
222 227 2.586792 GGAATCGAGGCAGTGGCT 59.413 61.111 20.74 20.74 42.48 4.75
230 235 1.229464 AGGCAGTGGCTCCTCTTCT 60.229 57.895 14.51 0.00 40.87 2.85
238 243 1.139947 GCTCCTCTTCTTCGACGGG 59.860 63.158 0.00 0.00 0.00 5.28
241 246 1.982938 CCTCTTCTTCGACGGGGGT 60.983 63.158 0.00 0.00 0.00 4.95
247 252 2.524887 TTCGACGGGGGTGGACTT 60.525 61.111 0.00 0.00 0.00 3.01
248 253 2.108278 CTTCGACGGGGGTGGACTTT 62.108 60.000 0.00 0.00 0.00 2.66
249 254 2.358247 CGACGGGGGTGGACTTTG 60.358 66.667 0.00 0.00 0.00 2.77
250 255 2.833957 GACGGGGGTGGACTTTGT 59.166 61.111 0.00 0.00 0.00 2.83
262 267 0.102300 GACTTTGTGGTTGTGTGGGC 59.898 55.000 0.00 0.00 0.00 5.36
287 292 1.202663 CGGAGTCTGGATCTCGAGGTA 60.203 57.143 13.56 0.00 33.26 3.08
288 293 2.745482 CGGAGTCTGGATCTCGAGGTAA 60.745 54.545 13.56 0.00 33.26 2.85
289 294 3.492337 GGAGTCTGGATCTCGAGGTAAT 58.508 50.000 13.56 0.00 33.26 1.89
293 298 3.632604 GTCTGGATCTCGAGGTAATGACA 59.367 47.826 13.56 0.00 0.00 3.58
294 299 4.098044 GTCTGGATCTCGAGGTAATGACAA 59.902 45.833 13.56 0.00 0.00 3.18
306 311 4.293901 AGGTAATGACAACCTTTATGGGGT 59.706 41.667 0.00 0.00 45.26 4.95
313 318 3.732048 AACCTTTATGGGGTTGTCGAT 57.268 42.857 0.00 0.00 44.34 3.59
326 331 0.458260 TGTCGATGGTATGGGTCGTG 59.542 55.000 0.00 0.00 36.77 4.35
338 343 1.224592 GGTCGTGCCCTCCATCAAT 59.775 57.895 0.00 0.00 0.00 2.57
341 346 1.139058 GTCGTGCCCTCCATCAATAGT 59.861 52.381 0.00 0.00 0.00 2.12
342 347 1.412710 TCGTGCCCTCCATCAATAGTC 59.587 52.381 0.00 0.00 0.00 2.59
343 348 1.869754 CGTGCCCTCCATCAATAGTCG 60.870 57.143 0.00 0.00 0.00 4.18
346 351 1.424638 CCCTCCATCAATAGTCGGGT 58.575 55.000 0.00 0.00 0.00 5.28
348 353 2.224305 CCCTCCATCAATAGTCGGGTTC 60.224 54.545 0.00 0.00 0.00 3.62
349 354 2.434336 CCTCCATCAATAGTCGGGTTCA 59.566 50.000 0.00 0.00 0.00 3.18
384 390 2.135139 GTGACACATGCGTCTCTTTCA 58.865 47.619 14.59 0.00 36.82 2.69
396 402 2.737783 GTCTCTTTCAGAGTCGTCGAGA 59.262 50.000 0.00 0.00 42.83 4.04
410 416 1.664649 CGAGAAGTGCTTGTCGCCA 60.665 57.895 16.32 0.00 46.43 5.69
411 417 1.221466 CGAGAAGTGCTTGTCGCCAA 61.221 55.000 16.32 0.00 46.43 4.52
412 418 0.235926 GAGAAGTGCTTGTCGCCAAC 59.764 55.000 0.00 0.00 38.05 3.77
413 419 0.463654 AGAAGTGCTTGTCGCCAACA 60.464 50.000 0.00 0.00 38.05 3.33
414 420 0.040958 GAAGTGCTTGTCGCCAACAG 60.041 55.000 0.00 0.00 39.58 3.16
415 421 2.050985 GTGCTTGTCGCCAACAGC 60.051 61.111 0.00 0.00 39.58 4.40
427 433 4.988598 AACAGCGGCGACAGGTGG 62.989 66.667 12.98 0.00 40.98 4.61
485 491 0.527817 GACGTCTTATGTGGAGGCGG 60.528 60.000 8.70 0.00 45.84 6.13
492 498 2.252072 TATGTGGAGGCGGCAAGTCC 62.252 60.000 13.08 10.51 0.00 3.85
528 534 1.271488 TGTGTTGCATGATGGCTCTGA 60.271 47.619 0.00 0.00 34.04 3.27
541 547 3.657610 TGGCTCTGATGGAGATTCCTTA 58.342 45.455 0.00 0.00 44.45 2.69
571 577 2.431057 CCAGCCTAGGAGTCGTGTATTT 59.569 50.000 14.75 0.00 0.00 1.40
575 581 4.222145 AGCCTAGGAGTCGTGTATTTTTCA 59.778 41.667 14.75 0.00 0.00 2.69
608 614 5.237996 TCGTCTTGTAGTATCATCGGGTTAG 59.762 44.000 0.00 0.00 0.00 2.34
611 617 6.039047 GTCTTGTAGTATCATCGGGTTAGTGA 59.961 42.308 0.00 0.00 0.00 3.41
616 622 6.821031 AGTATCATCGGGTTAGTGACTATC 57.179 41.667 0.00 0.00 0.00 2.08
629 635 4.605183 AGTGACTATCTGGTGAAGCTACT 58.395 43.478 0.00 0.00 0.00 2.57
630 636 5.756918 AGTGACTATCTGGTGAAGCTACTA 58.243 41.667 0.00 0.00 0.00 1.82
633 639 6.263392 GTGACTATCTGGTGAAGCTACTATCA 59.737 42.308 0.00 0.00 0.00 2.15
637 643 3.958704 CTGGTGAAGCTACTATCACGAG 58.041 50.000 12.14 12.14 45.39 4.18
643 649 4.767409 TGAAGCTACTATCACGAGGCATAT 59.233 41.667 0.00 0.00 0.00 1.78
662 668 5.478407 CATATGGCCTTCGGTTTTCTTTTT 58.522 37.500 3.32 0.00 0.00 1.94
664 670 1.864711 GGCCTTCGGTTTTCTTTTTGC 59.135 47.619 0.00 0.00 0.00 3.68
691 698 3.701532 TTTTGTGTTTTCGGCTACTGG 57.298 42.857 0.00 0.00 0.00 4.00
698 705 5.708230 TGTGTTTTCGGCTACTGGATTTTAT 59.292 36.000 0.00 0.00 0.00 1.40
745 752 1.647629 CATCGCTTGATGCAGAGGC 59.352 57.895 0.00 0.00 42.78 4.70
746 753 1.525535 ATCGCTTGATGCAGAGGCC 60.526 57.895 0.00 0.00 43.06 5.19
765 774 2.100749 GCCGGGGTTTATCATCCTTTTG 59.899 50.000 2.18 0.00 0.00 2.44
767 776 2.693074 CGGGGTTTATCATCCTTTTGGG 59.307 50.000 0.00 0.00 40.87 4.12
792 804 3.347958 AAAAGTGTTGCCGTGTGTATG 57.652 42.857 0.00 0.00 0.00 2.39
796 808 0.946700 TGTTGCCGTGTGTATGGTCG 60.947 55.000 0.00 0.00 35.28 4.79
802 814 0.809385 CGTGTGTATGGTCGGAGTCT 59.191 55.000 0.00 0.00 0.00 3.24
805 817 1.816835 TGTGTATGGTCGGAGTCTGAC 59.183 52.381 21.90 21.90 35.60 3.51
815 827 2.488545 TCGGAGTCTGACTAGAAGTTGC 59.511 50.000 10.86 0.00 34.01 4.17
834 858 2.161410 TGCACGTGATTTGTGGATTAGC 59.839 45.455 22.23 0.00 37.80 3.09
840 864 4.631377 CGTGATTTGTGGATTAGCTTCAGA 59.369 41.667 0.00 0.00 0.00 3.27
841 865 5.295292 CGTGATTTGTGGATTAGCTTCAGAT 59.705 40.000 0.00 0.00 0.00 2.90
842 866 6.183360 CGTGATTTGTGGATTAGCTTCAGATT 60.183 38.462 0.00 0.00 0.00 2.40
843 867 7.011389 CGTGATTTGTGGATTAGCTTCAGATTA 59.989 37.037 0.00 0.00 0.00 1.75
844 868 8.341173 GTGATTTGTGGATTAGCTTCAGATTAG 58.659 37.037 0.00 0.00 0.00 1.73
845 869 8.049117 TGATTTGTGGATTAGCTTCAGATTAGT 58.951 33.333 0.00 0.00 0.00 2.24
846 870 9.547753 GATTTGTGGATTAGCTTCAGATTAGTA 57.452 33.333 0.00 0.00 0.00 1.82
847 871 9.905713 ATTTGTGGATTAGCTTCAGATTAGTAA 57.094 29.630 0.00 0.00 0.00 2.24
848 872 8.948631 TTGTGGATTAGCTTCAGATTAGTAAG 57.051 34.615 0.00 0.00 0.00 2.34
849 873 8.306313 TGTGGATTAGCTTCAGATTAGTAAGA 57.694 34.615 0.00 0.00 0.00 2.10
858 882 6.404954 GCTTCAGATTAGTAAGAGTCCGAGTT 60.405 42.308 0.00 0.00 0.00 3.01
873 897 4.274978 TCCGAGTTGGACATGACTATACA 58.725 43.478 0.00 0.00 43.74 2.29
891 929 1.694150 ACACGCATAGCCAGACCATAT 59.306 47.619 0.00 0.00 0.00 1.78
985 1061 5.243981 CAACCAACTCTGTTCTGATCTGAT 58.756 41.667 2.84 0.00 0.00 2.90
1013 1089 1.703014 ATCCTCATGGCCGACTGCAT 61.703 55.000 0.00 0.00 43.89 3.96
1014 1090 1.890979 CCTCATGGCCGACTGCATC 60.891 63.158 0.00 0.00 43.89 3.91
1167 1243 0.321653 GGTGGAAGAATCTGTGGCGT 60.322 55.000 0.00 0.00 0.00 5.68
1242 1318 0.034476 GGGACCGTTTCGAGGACTTT 59.966 55.000 0.00 0.00 0.00 2.66
1254 1330 1.593209 GGACTTTGTCGACCACGCA 60.593 57.895 14.12 0.00 39.58 5.24
1455 1531 2.355115 CCCCGAAACCCCTTCAGG 59.645 66.667 0.00 0.00 33.17 3.86
1456 1532 2.535331 CCCCGAAACCCCTTCAGGT 61.535 63.158 0.00 0.00 44.00 4.00
1701 1777 0.401356 TCATCAGCCCAGTTTCAGCA 59.599 50.000 0.00 0.00 0.00 4.41
1703 1779 0.957395 ATCAGCCCAGTTTCAGCACG 60.957 55.000 0.00 0.00 0.00 5.34
1704 1780 1.893808 CAGCCCAGTTTCAGCACGT 60.894 57.895 0.00 0.00 0.00 4.49
1706 1782 0.324943 AGCCCAGTTTCAGCACGTAT 59.675 50.000 0.00 0.00 0.00 3.06
1707 1783 0.447801 GCCCAGTTTCAGCACGTATG 59.552 55.000 0.00 0.00 0.00 2.39
1709 1785 1.610624 CCCAGTTTCAGCACGTATGGT 60.611 52.381 0.00 0.00 36.87 3.55
1711 1787 2.412870 CAGTTTCAGCACGTATGGTCA 58.587 47.619 0.00 0.00 33.06 4.02
1728 1804 3.692406 ACCGTCGTTCCTGGGCTC 61.692 66.667 0.00 0.00 0.00 4.70
1781 1857 1.280133 CATCATGTATGGCGGGGAGAT 59.720 52.381 0.00 0.00 31.38 2.75
1784 1860 0.687354 ATGTATGGCGGGGAGATCAC 59.313 55.000 0.00 0.00 0.00 3.06
1787 1863 0.485543 TATGGCGGGGAGATCACCTA 59.514 55.000 9.20 0.00 37.25 3.08
1790 1866 2.857744 GCGGGGAGATCACCTACGG 61.858 68.421 20.89 8.18 37.25 4.02
1794 1870 1.344763 GGGGAGATCACCTACGGATTG 59.655 57.143 9.20 0.00 36.20 2.67
1795 1871 1.344763 GGGAGATCACCTACGGATTGG 59.655 57.143 9.20 0.00 0.00 3.16
1796 1872 2.317040 GGAGATCACCTACGGATTGGA 58.683 52.381 1.33 0.00 0.00 3.53
1798 1874 3.134081 GGAGATCACCTACGGATTGGAAA 59.866 47.826 1.33 0.00 0.00 3.13
1836 1912 0.391661 CACAGTATCACTTGCCGGCT 60.392 55.000 29.70 8.67 0.00 5.52
1892 1968 4.308458 CAACGTCCACCTGCCCGA 62.308 66.667 0.00 0.00 0.00 5.14
1893 1969 4.309950 AACGTCCACCTGCCCGAC 62.310 66.667 0.00 0.00 0.00 4.79
1913 1989 3.170362 CCAAGCTTGGGACTGGGA 58.830 61.111 34.08 0.00 44.70 4.37
1917 1993 1.005215 CAAGCTTGGGACTGGGAGAAT 59.995 52.381 19.14 0.00 0.00 2.40
1919 1995 0.462759 GCTTGGGACTGGGAGAATCG 60.463 60.000 0.00 0.00 34.37 3.34
1928 2004 1.415659 CTGGGAGAATCGGAAGCTCAT 59.584 52.381 11.11 0.00 34.37 2.90
1929 2005 1.414181 TGGGAGAATCGGAAGCTCATC 59.586 52.381 11.11 5.16 34.37 2.92
1930 2006 1.604185 GGGAGAATCGGAAGCTCATCG 60.604 57.143 11.11 0.00 34.37 3.84
1931 2007 1.135867 GAGAATCGGAAGCTCATCGC 58.864 55.000 0.00 0.00 39.57 4.58
1932 2008 0.249657 AGAATCGGAAGCTCATCGCC 60.250 55.000 0.00 0.00 40.39 5.54
1933 2009 0.530650 GAATCGGAAGCTCATCGCCA 60.531 55.000 0.00 0.00 40.39 5.69
1934 2010 0.107456 AATCGGAAGCTCATCGCCAT 59.893 50.000 0.00 0.00 40.39 4.40
1944 2020 2.159198 GCTCATCGCCATGTTTTTGGAT 60.159 45.455 0.00 0.00 39.25 3.41
1951 2027 3.617045 CGCCATGTTTTTGGATTCCATGT 60.617 43.478 6.15 0.00 39.25 3.21
1962 2038 2.450476 GATTCCATGTGTGGCTTCCTT 58.550 47.619 0.00 0.00 45.63 3.36
1973 2049 2.407428 GCTTCCTTGCCCGCCTTAC 61.407 63.158 0.00 0.00 0.00 2.34
1974 2050 2.046700 TTCCTTGCCCGCCTTACG 60.047 61.111 0.00 0.00 43.15 3.18
2001 2077 2.100252 TGTAAGCCTACATCTACACGGC 59.900 50.000 0.00 0.00 40.99 5.68
2008 2084 2.209838 ACATCTACACGGCTTCATCG 57.790 50.000 0.00 0.00 0.00 3.84
2020 2096 1.667236 CTTCATCGCCATGGTAAGCA 58.333 50.000 14.67 0.00 0.00 3.91
2021 2097 2.224606 CTTCATCGCCATGGTAAGCAT 58.775 47.619 14.67 0.00 0.00 3.79
2022 2098 1.882912 TCATCGCCATGGTAAGCATC 58.117 50.000 14.67 0.00 0.00 3.91
2023 2099 1.417517 TCATCGCCATGGTAAGCATCT 59.582 47.619 14.67 0.00 0.00 2.90
2024 2100 1.802960 CATCGCCATGGTAAGCATCTC 59.197 52.381 14.67 0.00 0.00 2.75
2025 2101 0.829990 TCGCCATGGTAAGCATCTCA 59.170 50.000 14.67 0.00 0.00 3.27
2026 2102 0.940126 CGCCATGGTAAGCATCTCAC 59.060 55.000 14.67 0.00 0.00 3.51
2027 2103 1.743431 CGCCATGGTAAGCATCTCACA 60.743 52.381 14.67 0.00 0.00 3.58
2028 2104 2.368439 GCCATGGTAAGCATCTCACAA 58.632 47.619 14.67 0.00 0.00 3.33
2029 2105 2.098117 GCCATGGTAAGCATCTCACAAC 59.902 50.000 14.67 0.00 0.00 3.32
2030 2106 2.684881 CCATGGTAAGCATCTCACAACC 59.315 50.000 2.57 0.00 0.00 3.77
2031 2107 3.346315 CATGGTAAGCATCTCACAACCA 58.654 45.455 0.00 0.00 40.99 3.67
2032 2108 3.500448 TGGTAAGCATCTCACAACCAA 57.500 42.857 0.00 0.00 34.20 3.67
2033 2109 3.146066 TGGTAAGCATCTCACAACCAAC 58.854 45.455 0.00 0.00 34.20 3.77
2034 2110 3.181445 TGGTAAGCATCTCACAACCAACT 60.181 43.478 0.00 0.00 34.20 3.16
2035 2111 3.821033 GGTAAGCATCTCACAACCAACTT 59.179 43.478 0.00 0.00 0.00 2.66
2036 2112 4.278419 GGTAAGCATCTCACAACCAACTTT 59.722 41.667 0.00 0.00 0.00 2.66
2037 2113 5.221244 GGTAAGCATCTCACAACCAACTTTT 60.221 40.000 0.00 0.00 0.00 2.27
2038 2114 4.574599 AGCATCTCACAACCAACTTTTC 57.425 40.909 0.00 0.00 0.00 2.29
2039 2115 3.953612 AGCATCTCACAACCAACTTTTCA 59.046 39.130 0.00 0.00 0.00 2.69
2040 2116 4.402155 AGCATCTCACAACCAACTTTTCAA 59.598 37.500 0.00 0.00 0.00 2.69
2041 2117 5.069516 AGCATCTCACAACCAACTTTTCAAT 59.930 36.000 0.00 0.00 0.00 2.57
2042 2118 5.403466 GCATCTCACAACCAACTTTTCAATC 59.597 40.000 0.00 0.00 0.00 2.67
2043 2119 5.514274 TCTCACAACCAACTTTTCAATCC 57.486 39.130 0.00 0.00 0.00 3.01
2044 2120 5.200483 TCTCACAACCAACTTTTCAATCCT 58.800 37.500 0.00 0.00 0.00 3.24
2045 2121 5.067674 TCTCACAACCAACTTTTCAATCCTG 59.932 40.000 0.00 0.00 0.00 3.86
2046 2122 4.099266 TCACAACCAACTTTTCAATCCTGG 59.901 41.667 0.00 0.00 0.00 4.45
2047 2123 4.030216 ACAACCAACTTTTCAATCCTGGT 58.970 39.130 0.00 0.00 38.82 4.00
2052 2128 4.700213 CCAACTTTTCAATCCTGGTATCGT 59.300 41.667 0.00 0.00 0.00 3.73
2060 2136 6.857437 TCAATCCTGGTATCGTATGATCAT 57.143 37.500 13.81 13.81 35.99 2.45
2061 2137 6.633856 TCAATCCTGGTATCGTATGATCATG 58.366 40.000 18.72 2.44 35.99 3.07
2062 2138 4.456280 TCCTGGTATCGTATGATCATGC 57.544 45.455 18.72 15.90 35.99 4.06
2063 2139 4.089361 TCCTGGTATCGTATGATCATGCT 58.911 43.478 18.72 4.69 35.99 3.79
2072 2148 6.923928 TCGTATGATCATGCTGATTTGAAA 57.076 33.333 18.72 0.00 37.20 2.69
2135 2213 5.679734 ATGTCCTTTAGCTGCAATTATCG 57.320 39.130 1.02 0.00 0.00 2.92
2181 2259 7.805083 ACCAGGATCTAGTAAGCATTCATAT 57.195 36.000 0.00 0.00 0.00 1.78
2282 2371 6.824305 ATTCCCAGTGTTGAATAACTTGAG 57.176 37.500 3.91 0.00 37.68 3.02
2286 2375 7.004086 TCCCAGTGTTGAATAACTTGAGAAAT 58.996 34.615 0.00 0.00 37.68 2.17
2310 2399 4.910195 TGCACCTAGAAGAATGTGATGTT 58.090 39.130 0.00 0.00 0.00 2.71
2316 2405 5.583854 CCTAGAAGAATGTGATGTTGGAGTG 59.416 44.000 0.00 0.00 0.00 3.51
2319 2408 5.471456 AGAAGAATGTGATGTTGGAGTGAAC 59.529 40.000 0.00 0.00 0.00 3.18
2379 2468 2.616634 TGGAAAAGCTTGCATTGCAA 57.383 40.000 21.97 21.97 46.80 4.08
2408 2497 0.026285 GTACGGAACATGCACGCATC 59.974 55.000 0.44 0.00 33.90 3.91
2418 2507 0.744057 TGCACGCATCACACCTATGG 60.744 55.000 0.00 0.00 0.00 2.74
2438 2527 4.440880 TGGTTGCTTTGTTTCCTTCAATG 58.559 39.130 0.00 0.00 0.00 2.82
2443 2532 7.440856 GGTTGCTTTGTTTCCTTCAATGATTTA 59.559 33.333 0.00 0.00 0.00 1.40
2451 2540 8.686334 TGTTTCCTTCAATGATTTATAGGCTTC 58.314 33.333 0.00 0.00 0.00 3.86
2456 2545 7.014038 CCTTCAATGATTTATAGGCTTCTTGCT 59.986 37.037 0.00 0.00 42.39 3.91
2458 2547 8.978874 TCAATGATTTATAGGCTTCTTGCTAA 57.021 30.769 0.00 0.00 42.39 3.09
2459 2548 8.840321 TCAATGATTTATAGGCTTCTTGCTAAC 58.160 33.333 0.00 0.00 42.39 2.34
2460 2549 8.623903 CAATGATTTATAGGCTTCTTGCTAACA 58.376 33.333 0.00 0.00 42.39 2.41
2481 2579 9.577110 CTAACAAAATAATCTCACATGTGCAAT 57.423 29.630 21.38 13.21 0.00 3.56
2498 2596 4.397417 GTGCAATCATAGTTTGAAGCTCCT 59.603 41.667 10.89 0.00 39.12 3.69
2534 2635 2.437281 GAGGAAGGAGATGGCATCTTCA 59.563 50.000 32.07 0.00 40.38 3.02
2539 2640 4.313020 AGGAGATGGCATCTTCAAAACT 57.687 40.909 32.07 19.21 40.38 2.66
2546 2647 3.091545 GGCATCTTCAAAACTCCATGGA 58.908 45.455 15.27 15.27 0.00 3.41
2559 2660 1.484653 TCCATGGATCAACTACACCGG 59.515 52.381 11.44 0.00 0.00 5.28
2591 2692 3.423571 GTGCAAGAAGCTGAAATCGATG 58.576 45.455 0.00 0.00 45.94 3.84
2594 2695 3.314635 GCAAGAAGCTGAAATCGATGGAT 59.685 43.478 0.00 0.00 41.15 3.41
2600 2701 6.994496 AGAAGCTGAAATCGATGGATATCAAA 59.006 34.615 0.00 0.00 32.67 2.69
2663 2764 2.454381 AGAGATCTCTAAGGGGATGGCT 59.546 50.000 23.98 0.00 38.35 4.75
2666 2767 0.642156 TCTCTAAGGGGATGGCTCCA 59.358 55.000 5.54 0.00 44.08 3.86
2690 2791 0.827925 AGTGGGAGCGAGTCAAGACA 60.828 55.000 2.72 0.00 0.00 3.41
2747 3283 4.387026 TGAAACCTGAGTTCCCATGAAT 57.613 40.909 0.00 0.00 34.19 2.57
2753 3289 7.451731 AACCTGAGTTCCCATGAATAATAGA 57.548 36.000 0.00 0.00 31.98 1.98
2754 3290 7.451731 ACCTGAGTTCCCATGAATAATAGAA 57.548 36.000 0.00 0.00 31.98 2.10
2755 3291 7.872138 ACCTGAGTTCCCATGAATAATAGAAA 58.128 34.615 0.00 0.00 31.98 2.52
2756 3292 7.775561 ACCTGAGTTCCCATGAATAATAGAAAC 59.224 37.037 0.00 0.00 31.98 2.78
2757 3293 7.775093 CCTGAGTTCCCATGAATAATAGAAACA 59.225 37.037 0.00 0.00 31.98 2.83
2758 3294 9.177608 CTGAGTTCCCATGAATAATAGAAACAA 57.822 33.333 0.00 0.00 31.98 2.83
2759 3295 8.956426 TGAGTTCCCATGAATAATAGAAACAAC 58.044 33.333 0.00 0.00 31.98 3.32
2760 3296 8.293699 AGTTCCCATGAATAATAGAAACAACC 57.706 34.615 0.00 0.00 31.98 3.77
2761 3297 7.342026 AGTTCCCATGAATAATAGAAACAACCC 59.658 37.037 0.00 0.00 31.98 4.11
2762 3298 6.980577 TCCCATGAATAATAGAAACAACCCT 58.019 36.000 0.00 0.00 0.00 4.34
2763 3299 7.060421 TCCCATGAATAATAGAAACAACCCTC 58.940 38.462 0.00 0.00 0.00 4.30
2764 3300 6.833416 CCCATGAATAATAGAAACAACCCTCA 59.167 38.462 0.00 0.00 0.00 3.86
2765 3301 7.506938 CCCATGAATAATAGAAACAACCCTCAT 59.493 37.037 0.00 0.00 0.00 2.90
2766 3302 9.573166 CCATGAATAATAGAAACAACCCTCATA 57.427 33.333 0.00 0.00 0.00 2.15
2769 3305 9.967451 TGAATAATAGAAACAACCCTCATACAA 57.033 29.630 0.00 0.00 0.00 2.41
2816 3352 8.918202 TGAATAACACACCAGAAAATAGTTCT 57.082 30.769 0.00 0.00 0.00 3.01
2819 3355 8.788325 ATAACACACCAGAAAATAGTTCTACC 57.212 34.615 0.00 0.00 0.00 3.18
2820 3356 6.435292 ACACACCAGAAAATAGTTCTACCT 57.565 37.500 0.00 0.00 0.00 3.08
2821 3357 6.838382 ACACACCAGAAAATAGTTCTACCTT 58.162 36.000 0.00 0.00 0.00 3.50
2822 3358 7.970102 ACACACCAGAAAATAGTTCTACCTTA 58.030 34.615 0.00 0.00 0.00 2.69
2823 3359 8.434392 ACACACCAGAAAATAGTTCTACCTTAA 58.566 33.333 0.00 0.00 0.00 1.85
2824 3360 8.718734 CACACCAGAAAATAGTTCTACCTTAAC 58.281 37.037 0.00 0.00 0.00 2.01
2825 3361 7.881751 ACACCAGAAAATAGTTCTACCTTAACC 59.118 37.037 0.00 0.00 0.00 2.85
2887 3425 7.888021 AGTTGGACTCATATTGTATCAAAACCA 59.112 33.333 0.00 0.00 0.00 3.67
2890 3428 9.337396 TGGACTCATATTGTATCAAAACCATAC 57.663 33.333 0.00 0.00 0.00 2.39
2893 3431 9.679661 ACTCATATTGTATCAAAACCATACACA 57.320 29.630 0.00 0.00 36.63 3.72
2905 3443 9.575868 TCAAAACCATACACAGGAAACTATTTA 57.424 29.630 0.00 0.00 40.21 1.40
2918 3456 5.333568 GGAAACTATTTACGTCCACACACAC 60.334 44.000 0.00 0.00 0.00 3.82
2919 3457 4.325028 ACTATTTACGTCCACACACACA 57.675 40.909 0.00 0.00 0.00 3.72
2920 3458 4.695396 ACTATTTACGTCCACACACACAA 58.305 39.130 0.00 0.00 0.00 3.33
2921 3459 5.302360 ACTATTTACGTCCACACACACAAT 58.698 37.500 0.00 0.00 0.00 2.71
2922 3460 4.742438 ATTTACGTCCACACACACAATC 57.258 40.909 0.00 0.00 0.00 2.67
2923 3461 2.157834 TACGTCCACACACACAATCC 57.842 50.000 0.00 0.00 0.00 3.01
2924 3462 0.179234 ACGTCCACACACACAATCCA 59.821 50.000 0.00 0.00 0.00 3.41
2933 3471 2.686405 CACACACAATCCATATGCAGCT 59.314 45.455 0.00 0.00 0.00 4.24
2951 3489 4.780815 CAGCTAAATTATGGACTGGGTGA 58.219 43.478 0.00 0.00 0.00 4.02
2973 3601 4.630111 ACAAATGTCATGCAAATTTCGGT 58.370 34.783 0.00 0.00 0.00 4.69
3016 3644 9.669353 GTTATATTTGAAGTGCTTGTATCCATG 57.331 33.333 0.00 0.00 0.00 3.66
3018 3646 2.368439 TGAAGTGCTTGTATCCATGGC 58.632 47.619 6.96 0.00 0.00 4.40
3039 3667 3.056328 GGCTTGTCGTGCCTTCCC 61.056 66.667 0.00 0.00 46.38 3.97
3041 3669 2.750350 CTTGTCGTGCCTTCCCCT 59.250 61.111 0.00 0.00 0.00 4.79
3042 3670 1.073199 CTTGTCGTGCCTTCCCCTT 59.927 57.895 0.00 0.00 0.00 3.95
3048 3676 1.265454 CGTGCCTTCCCCTTAGTCCT 61.265 60.000 0.00 0.00 0.00 3.85
3050 3678 1.763545 GTGCCTTCCCCTTAGTCCTAG 59.236 57.143 0.00 0.00 0.00 3.02
3083 3711 0.901124 TGCTGCCAAAAACCACTTGT 59.099 45.000 0.00 0.00 0.00 3.16
3096 3724 1.411394 CACTTGTTTGATGCCAAGCG 58.589 50.000 0.00 0.00 41.36 4.68
3122 3750 3.873952 GCTGTTATTTTGCCAAACCAACA 59.126 39.130 12.61 12.61 32.83 3.33
3127 3755 3.922171 TTTTGCCAAACCAACATCCTT 57.078 38.095 0.00 0.00 0.00 3.36
3148 3776 2.664015 AGATAGGGTGAGTTACGGACC 58.336 52.381 0.00 0.00 0.00 4.46
3150 3778 2.610438 TAGGGTGAGTTACGGACCTT 57.390 50.000 5.95 1.78 0.00 3.50
3227 3867 6.862608 TGTATTGTCTTGTGAAATGATGTTGC 59.137 34.615 0.00 0.00 0.00 4.17
3246 3886 6.447162 TGTTGCGTAATGTCATATCTAGGAG 58.553 40.000 0.00 0.00 0.00 3.69
3252 3892 8.913656 GCGTAATGTCATATCTAGGAGTTTTAC 58.086 37.037 0.00 0.00 0.00 2.01
3285 3925 6.851222 TTGCAGCATAATAGAGCTAGAAAC 57.149 37.500 0.00 0.00 39.50 2.78
3361 4002 8.891671 AATCTTCTTTTCAGCTGCAATTTTTA 57.108 26.923 9.47 0.00 0.00 1.52
3362 4003 9.498176 AATCTTCTTTTCAGCTGCAATTTTTAT 57.502 25.926 9.47 0.00 0.00 1.40
3372 4013 9.656040 TCAGCTGCAATTTTTATATTTTCATGT 57.344 25.926 9.47 0.00 0.00 3.21
3420 4061 9.577110 CATGTGATATTTTGAAGTGCTTGTATT 57.423 29.630 0.00 0.00 0.00 1.89
3431 4072 8.292444 TGAAGTGCTTGTATTTATAGCCAAAT 57.708 30.769 0.00 0.00 34.03 2.32
3439 4080 9.669353 CTTGTATTTATAGCCAAATGTCATCAC 57.331 33.333 0.00 0.00 30.84 3.06
3442 4083 1.006086 TAGCCAAATGTCATCACGCG 58.994 50.000 3.53 3.53 0.00 6.01
3443 4084 1.869132 GCCAAATGTCATCACGCGC 60.869 57.895 5.73 0.00 0.00 6.86
3456 4097 2.261671 CGCGCTCCACCTAGTTGT 59.738 61.111 5.56 0.00 0.00 3.32
3500 4141 9.561069 AGAATCACTTGTTTTATAACAGAGTGT 57.439 29.630 23.51 14.92 44.56 3.55
3561 4202 3.003480 GTGCCTAGAGTTGTTCCATGAC 58.997 50.000 0.00 0.00 0.00 3.06
3562 4203 2.637382 TGCCTAGAGTTGTTCCATGACA 59.363 45.455 0.00 0.00 0.00 3.58
3570 4211 0.036164 TGTTCCATGACAAGTCCCCG 59.964 55.000 0.00 0.00 0.00 5.73
3571 4212 0.323629 GTTCCATGACAAGTCCCCGA 59.676 55.000 0.00 0.00 0.00 5.14
3583 4224 4.033776 CCCCGAAGAGGCAGCCAA 62.034 66.667 15.80 0.00 39.21 4.52
3592 4233 1.846712 GAGGCAGCCAAAGGAGGAGT 61.847 60.000 15.80 0.00 0.00 3.85
3597 4238 1.005215 CAGCCAAAGGAGGAGTGGAAT 59.995 52.381 0.00 0.00 34.05 3.01
3610 4251 3.420893 GAGTGGAATGGTGATTGGAACA 58.579 45.455 0.00 0.00 0.00 3.18
3611 4252 4.019174 GAGTGGAATGGTGATTGGAACAT 58.981 43.478 0.00 0.00 39.30 2.71
3613 4254 3.763360 GTGGAATGGTGATTGGAACATGA 59.237 43.478 0.00 0.00 39.30 3.07
3633 4274 1.523938 GTGACGGCTAGGATTGGCC 60.524 63.158 0.00 0.00 44.43 5.36
3637 4278 3.006677 GGCTAGGATTGGCCACCA 58.993 61.111 3.88 0.00 46.84 4.17
3646 4287 3.761896 TTGGCCACCAATCATCACA 57.238 47.368 3.88 0.00 38.75 3.58
3647 4288 1.255882 TTGGCCACCAATCATCACAC 58.744 50.000 3.88 0.00 38.75 3.82
3648 4289 0.611618 TGGCCACCAATCATCACACC 60.612 55.000 0.00 0.00 0.00 4.16
3649 4290 1.322538 GGCCACCAATCATCACACCC 61.323 60.000 0.00 0.00 0.00 4.61
3650 4291 1.322538 GCCACCAATCATCACACCCC 61.323 60.000 0.00 0.00 0.00 4.95
3651 4292 0.039472 CCACCAATCATCACACCCCA 59.961 55.000 0.00 0.00 0.00 4.96
3652 4293 1.466856 CACCAATCATCACACCCCAG 58.533 55.000 0.00 0.00 0.00 4.45
3653 4294 0.323725 ACCAATCATCACACCCCAGC 60.324 55.000 0.00 0.00 0.00 4.85
3654 4295 1.039233 CCAATCATCACACCCCAGCC 61.039 60.000 0.00 0.00 0.00 4.85
3655 4296 1.077501 AATCATCACACCCCAGCCG 60.078 57.895 0.00 0.00 0.00 5.52
3656 4297 3.704231 ATCATCACACCCCAGCCGC 62.704 63.158 0.00 0.00 0.00 6.53
3677 4318 3.434319 GCCGTCCACACAGCCATG 61.434 66.667 0.00 0.00 0.00 3.66
3678 4319 2.347114 CCGTCCACACAGCCATGA 59.653 61.111 0.00 0.00 0.00 3.07
3679 4320 2.034879 CCGTCCACACAGCCATGAC 61.035 63.158 0.00 0.00 0.00 3.06
3680 4321 2.034879 CGTCCACACAGCCATGACC 61.035 63.158 0.00 0.00 0.00 4.02
3681 4322 1.073025 GTCCACACAGCCATGACCA 59.927 57.895 0.00 0.00 0.00 4.02
3682 4323 1.073025 TCCACACAGCCATGACCAC 59.927 57.895 0.00 0.00 0.00 4.16
3683 4324 1.973281 CCACACAGCCATGACCACC 60.973 63.158 0.00 0.00 0.00 4.61
3684 4325 1.228215 CACACAGCCATGACCACCA 60.228 57.895 0.00 0.00 0.00 4.17
3685 4326 1.073722 ACACAGCCATGACCACCAG 59.926 57.895 0.00 0.00 0.00 4.00
3686 4327 1.676635 CACAGCCATGACCACCAGG 60.677 63.158 0.00 0.00 42.21 4.45
3689 4330 2.283101 GCCATGACCACCAGGCAA 60.283 61.111 0.00 0.00 46.26 4.52
3690 4331 2.639327 GCCATGACCACCAGGCAAC 61.639 63.158 0.00 0.00 46.26 4.17
3691 4332 1.228521 CCATGACCACCAGGCAACA 60.229 57.895 0.00 0.00 39.06 3.33
3692 4333 1.526575 CCATGACCACCAGGCAACAC 61.527 60.000 0.00 0.00 39.06 3.32
3693 4334 0.822944 CATGACCACCAGGCAACACA 60.823 55.000 0.00 0.00 39.06 3.72
3694 4335 0.112995 ATGACCACCAGGCAACACAT 59.887 50.000 0.00 0.00 39.06 3.21
3695 4336 0.822944 TGACCACCAGGCAACACATG 60.823 55.000 0.00 0.00 39.06 3.21
3696 4337 0.537143 GACCACCAGGCAACACATGA 60.537 55.000 0.00 0.00 39.06 3.07
3697 4338 0.538057 ACCACCAGGCAACACATGAG 60.538 55.000 0.00 0.00 39.06 2.90
3698 4339 1.582968 CACCAGGCAACACATGAGC 59.417 57.895 0.00 0.00 41.41 4.26
3699 4340 1.968017 ACCAGGCAACACATGAGCG 60.968 57.895 0.00 0.00 41.41 5.03
3700 4341 2.177531 CAGGCAACACATGAGCGC 59.822 61.111 0.00 0.00 41.41 5.92
3701 4342 3.425713 AGGCAACACATGAGCGCG 61.426 61.111 0.00 0.00 41.41 6.86
3702 4343 3.422303 GGCAACACATGAGCGCGA 61.422 61.111 12.10 0.00 0.00 5.87
3703 4344 2.097160 GCAACACATGAGCGCGAG 59.903 61.111 12.10 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.517934 CTGGCCTGCCATCCCTGG 62.518 72.222 11.98 0.00 46.15 4.45
10 11 4.517934 CCTGGCCTGCCATCCCTG 62.518 72.222 11.98 0.00 46.15 4.45
12 13 4.828296 CACCTGGCCTGCCATCCC 62.828 72.222 11.98 0.00 46.15 3.85
13 14 3.065787 ATCACCTGGCCTGCCATCC 62.066 63.158 11.98 0.00 46.15 3.51
14 15 1.826921 CATCACCTGGCCTGCCATC 60.827 63.158 11.98 0.00 46.15 3.51
15 16 2.277737 CATCACCTGGCCTGCCAT 59.722 61.111 11.98 0.00 46.15 4.40
16 17 4.051167 CCATCACCTGGCCTGCCA 62.051 66.667 10.98 10.98 45.02 4.92
25 26 1.149101 ACCACAAGGAACCATCACCT 58.851 50.000 0.00 0.00 38.69 4.00
26 27 1.247567 CACCACAAGGAACCATCACC 58.752 55.000 0.00 0.00 38.69 4.02
30 31 1.603455 CGCCACCACAAGGAACCAT 60.603 57.895 0.00 0.00 38.69 3.55
34 35 1.002624 GATCCGCCACCACAAGGAA 60.003 57.895 0.00 0.00 38.69 3.36
44 45 0.107214 GTGGGATTCAAGATCCGCCA 60.107 55.000 0.00 0.00 39.07 5.69
56 57 1.342374 GGCATCTTTGGGAGTGGGATT 60.342 52.381 0.00 0.00 0.00 3.01
69 71 4.701663 CACGTCCTGTGGCATCTT 57.298 55.556 0.00 0.00 45.21 2.40
103 105 4.477975 GTCGTCGACGCCAGAGGG 62.478 72.222 32.19 4.71 39.60 4.30
121 123 4.082523 CGTGGTCCCGCATCAGGT 62.083 66.667 0.00 0.00 0.00 4.00
144 148 2.542907 CGCCCATACAACGGCATCC 61.543 63.158 0.00 0.00 46.04 3.51
146 150 1.817941 GTCGCCCATACAACGGCAT 60.818 57.895 0.00 0.00 46.04 4.40
155 159 2.889617 CCACTGTCGTCGCCCATA 59.110 61.111 0.00 0.00 0.00 2.74
188 193 3.077556 CGGGTGCTACAGGGAGCT 61.078 66.667 4.93 0.00 43.27 4.09
199 204 4.467084 TGCCTCGATTCCGGGTGC 62.467 66.667 0.00 0.00 33.57 5.01
200 205 2.202932 CTGCCTCGATTCCGGGTG 60.203 66.667 0.00 0.00 33.57 4.61
201 206 2.683933 ACTGCCTCGATTCCGGGT 60.684 61.111 0.00 0.00 33.57 5.28
203 208 2.202932 CCACTGCCTCGATTCCGG 60.203 66.667 0.00 0.00 36.24 5.14
212 217 0.839853 AAGAAGAGGAGCCACTGCCT 60.840 55.000 0.00 0.00 38.69 4.75
216 221 0.892063 GTCGAAGAAGAGGAGCCACT 59.108 55.000 0.00 0.00 39.69 4.00
218 223 1.595993 CCGTCGAAGAAGAGGAGCCA 61.596 60.000 0.00 0.00 38.59 4.75
222 227 1.681327 CCCCCGTCGAAGAAGAGGA 60.681 63.158 0.00 0.00 38.59 3.71
230 235 2.142104 AAAGTCCACCCCCGTCGAA 61.142 57.895 0.00 0.00 0.00 3.71
238 243 0.744281 CACAACCACAAAGTCCACCC 59.256 55.000 0.00 0.00 0.00 4.61
241 246 1.468985 CCACACAACCACAAAGTCCA 58.531 50.000 0.00 0.00 0.00 4.02
247 252 2.115911 GTCGCCCACACAACCACAA 61.116 57.895 0.00 0.00 0.00 3.33
248 253 2.515057 GTCGCCCACACAACCACA 60.515 61.111 0.00 0.00 0.00 4.17
249 254 2.203153 AGTCGCCCACACAACCAC 60.203 61.111 0.00 0.00 0.00 4.16
250 255 2.110213 GAGTCGCCCACACAACCA 59.890 61.111 0.00 0.00 0.00 3.67
294 299 2.356741 CCATCGACAACCCCATAAAGGT 60.357 50.000 0.00 0.00 40.14 3.50
300 305 1.142870 CCATACCATCGACAACCCCAT 59.857 52.381 0.00 0.00 0.00 4.00
306 311 1.134936 CACGACCCATACCATCGACAA 60.135 52.381 0.00 0.00 39.16 3.18
309 314 1.440060 GCACGACCCATACCATCGA 59.560 57.895 0.00 0.00 39.16 3.59
326 331 0.035458 CCCGACTATTGATGGAGGGC 59.965 60.000 0.00 0.00 0.00 5.19
338 343 1.448893 GCCGCATTGAACCCGACTA 60.449 57.895 0.00 0.00 0.00 2.59
341 346 2.435938 GAGCCGCATTGAACCCGA 60.436 61.111 0.00 0.00 0.00 5.14
342 347 3.864686 CGAGCCGCATTGAACCCG 61.865 66.667 0.00 0.00 0.00 5.28
343 348 3.508840 CCGAGCCGCATTGAACCC 61.509 66.667 0.00 0.00 0.00 4.11
346 351 3.126879 CTGCCGAGCCGCATTGAA 61.127 61.111 0.00 0.00 38.30 2.69
384 390 1.068885 CAAGCACTTCTCGACGACTCT 60.069 52.381 0.00 0.00 0.00 3.24
410 416 4.988598 CCACCTGTCGCCGCTGTT 62.989 66.667 0.00 0.00 0.00 3.16
415 421 3.343788 GAGTCTCCACCTGTCGCCG 62.344 68.421 0.00 0.00 0.00 6.46
416 422 2.574399 GAGTCTCCACCTGTCGCC 59.426 66.667 0.00 0.00 0.00 5.54
417 423 2.574399 GGAGTCTCCACCTGTCGC 59.426 66.667 14.46 0.00 36.28 5.19
418 424 2.701780 CCGGAGTCTCCACCTGTCG 61.702 68.421 19.15 2.80 35.91 4.35
427 433 2.725008 CGCATCCTCCGGAGTCTC 59.275 66.667 29.25 14.19 34.05 3.36
508 514 1.170442 CAGAGCCATCATGCAACACA 58.830 50.000 0.00 0.00 0.00 3.72
512 518 1.213430 TCCATCAGAGCCATCATGCAA 59.787 47.619 0.00 0.00 0.00 4.08
519 525 2.703947 AGGAATCTCCATCAGAGCCAT 58.296 47.619 0.00 0.00 42.90 4.40
550 556 1.693627 ATACACGACTCCTAGGCTGG 58.306 55.000 2.96 0.00 0.00 4.85
551 557 3.802948 AAATACACGACTCCTAGGCTG 57.197 47.619 2.96 1.67 0.00 4.85
561 567 8.687301 ACGAAATCAAAATGAAAAATACACGAC 58.313 29.630 0.00 0.00 0.00 4.34
563 569 8.901748 AGACGAAATCAAAATGAAAAATACACG 58.098 29.630 0.00 0.00 0.00 4.49
592 598 7.606839 CAGATAGTCACTAACCCGATGATACTA 59.393 40.741 0.00 0.00 0.00 1.82
593 599 6.431543 CAGATAGTCACTAACCCGATGATACT 59.568 42.308 0.00 0.00 0.00 2.12
594 600 6.349445 CCAGATAGTCACTAACCCGATGATAC 60.349 46.154 0.00 0.00 0.00 2.24
601 607 3.021695 TCACCAGATAGTCACTAACCCG 58.978 50.000 0.00 0.00 0.00 5.28
608 614 4.993029 AGTAGCTTCACCAGATAGTCAC 57.007 45.455 0.00 0.00 0.00 3.67
611 617 5.239744 CGTGATAGTAGCTTCACCAGATAGT 59.760 44.000 10.03 0.00 39.23 2.12
616 622 3.243234 CCTCGTGATAGTAGCTTCACCAG 60.243 52.174 10.03 7.18 39.23 4.00
670 676 3.695060 TCCAGTAGCCGAAAACACAAAAA 59.305 39.130 0.00 0.00 0.00 1.94
671 677 3.280295 TCCAGTAGCCGAAAACACAAAA 58.720 40.909 0.00 0.00 0.00 2.44
673 679 2.623878 TCCAGTAGCCGAAAACACAA 57.376 45.000 0.00 0.00 0.00 3.33
674 680 2.851263 ATCCAGTAGCCGAAAACACA 57.149 45.000 0.00 0.00 0.00 3.72
675 681 4.499037 AAAATCCAGTAGCCGAAAACAC 57.501 40.909 0.00 0.00 0.00 3.32
737 744 2.265467 GATAAACCCCGGCCTCTGCA 62.265 60.000 0.00 0.00 40.13 4.41
745 752 2.693074 CCAAAAGGATGATAAACCCCGG 59.307 50.000 0.00 0.00 0.00 5.73
746 753 2.693074 CCCAAAAGGATGATAAACCCCG 59.307 50.000 0.00 0.00 38.24 5.73
773 782 1.606668 CCATACACACGGCAACACTTT 59.393 47.619 0.00 0.00 0.00 2.66
776 785 0.515564 GACCATACACACGGCAACAC 59.484 55.000 0.00 0.00 0.00 3.32
777 786 0.946700 CGACCATACACACGGCAACA 60.947 55.000 0.00 0.00 0.00 3.33
792 804 2.713877 ACTTCTAGTCAGACTCCGACC 58.286 52.381 6.27 0.00 33.70 4.79
796 808 3.580731 GTGCAACTTCTAGTCAGACTCC 58.419 50.000 6.27 0.00 0.00 3.85
802 814 3.660501 ATCACGTGCAACTTCTAGTCA 57.339 42.857 11.67 0.00 31.75 3.41
805 817 4.457810 CACAAATCACGTGCAACTTCTAG 58.542 43.478 11.67 0.00 31.75 2.43
815 827 4.154015 TGAAGCTAATCCACAAATCACGTG 59.846 41.667 9.94 9.94 0.00 4.49
834 858 6.687081 ACTCGGACTCTTACTAATCTGAAG 57.313 41.667 0.00 0.00 0.00 3.02
858 882 4.558697 GCTATGCGTGTATAGTCATGTCCA 60.559 45.833 6.80 0.00 33.99 4.02
867 891 2.296190 TGGTCTGGCTATGCGTGTATAG 59.704 50.000 1.14 1.14 34.48 1.31
869 893 1.119684 TGGTCTGGCTATGCGTGTAT 58.880 50.000 0.00 0.00 0.00 2.29
870 894 1.119684 ATGGTCTGGCTATGCGTGTA 58.880 50.000 0.00 0.00 0.00 2.90
871 895 1.119684 TATGGTCTGGCTATGCGTGT 58.880 50.000 0.00 0.00 0.00 4.49
873 897 1.609061 GCATATGGTCTGGCTATGCGT 60.609 52.381 4.56 0.00 38.62 5.24
891 929 0.097325 GACGTTTGTTTGTCACGGCA 59.903 50.000 0.00 0.00 35.20 5.69
938 982 4.980805 TGCCGGCTGGTCGTTGTC 62.981 66.667 29.70 0.00 37.67 3.18
985 1061 1.536073 GCCATGAGGATCGGATCGGA 61.536 60.000 11.62 5.34 38.61 4.55
1242 1318 2.019408 CGTCAATGCGTGGTCGACA 61.019 57.895 18.91 0.27 39.71 4.35
1254 1330 2.106332 GGCGGGATCGACGTCAAT 59.894 61.111 17.16 1.34 39.00 2.57
1603 1679 3.844090 GTGGAGCTCCTCGAGGGC 61.844 72.222 32.28 29.04 36.82 5.19
1687 1763 0.324943 ATACGTGCTGAAACTGGGCT 59.675 50.000 0.00 0.00 0.00 5.19
1688 1764 0.447801 CATACGTGCTGAAACTGGGC 59.552 55.000 0.00 0.00 0.00 5.36
1693 1769 1.463444 GGTGACCATACGTGCTGAAAC 59.537 52.381 0.00 0.00 0.00 2.78
1701 1777 0.109597 GAACGACGGTGACCATACGT 60.110 55.000 1.11 7.17 44.35 3.57
1703 1779 0.529378 AGGAACGACGGTGACCATAC 59.471 55.000 1.11 0.00 0.00 2.39
1704 1780 0.528924 CAGGAACGACGGTGACCATA 59.471 55.000 1.11 0.00 0.00 2.74
1706 1782 2.732016 CAGGAACGACGGTGACCA 59.268 61.111 1.11 0.00 0.00 4.02
1707 1783 2.048503 CCAGGAACGACGGTGACC 60.049 66.667 0.00 0.00 0.00 4.02
1709 1785 3.998672 GCCCAGGAACGACGGTGA 61.999 66.667 0.00 0.00 0.00 4.02
1711 1787 3.692406 GAGCCCAGGAACGACGGT 61.692 66.667 0.00 0.00 0.00 4.83
1787 1863 0.036671 GACTCCGGTTTCCAATCCGT 60.037 55.000 0.00 0.00 44.51 4.69
1811 1887 0.744414 CAAGTGATACTGTGGGGCCG 60.744 60.000 0.00 0.00 0.00 6.13
1820 1896 0.905357 AAGAGCCGGCAAGTGATACT 59.095 50.000 31.54 3.33 0.00 2.12
1836 1912 1.174783 GGAGTGACGCCTCAGTAAGA 58.825 55.000 0.00 0.00 32.91 2.10
1870 1946 4.988598 CAGGTGGACGTTGGCGCT 62.989 66.667 7.64 0.00 42.83 5.92
1876 1952 4.309950 GTCGGGCAGGTGGACGTT 62.310 66.667 0.00 0.00 0.00 3.99
1908 1984 0.826715 TGAGCTTCCGATTCTCCCAG 59.173 55.000 0.00 0.00 0.00 4.45
1909 1985 1.414181 GATGAGCTTCCGATTCTCCCA 59.586 52.381 0.00 0.00 0.00 4.37
1910 1986 1.604185 CGATGAGCTTCCGATTCTCCC 60.604 57.143 0.00 0.00 0.00 4.30
1911 1987 1.777101 CGATGAGCTTCCGATTCTCC 58.223 55.000 0.00 0.00 0.00 3.71
1912 1988 1.135867 GCGATGAGCTTCCGATTCTC 58.864 55.000 7.39 0.00 44.04 2.87
1913 1989 3.280920 GCGATGAGCTTCCGATTCT 57.719 52.632 7.39 0.00 44.04 2.40
1928 2004 2.242926 TGGAATCCAAAAACATGGCGA 58.757 42.857 0.00 0.00 40.46 5.54
1929 2005 2.739885 TGGAATCCAAAAACATGGCG 57.260 45.000 0.00 0.00 40.46 5.69
1930 2006 3.685756 CACATGGAATCCAAAAACATGGC 59.314 43.478 5.89 0.00 42.28 4.40
1931 2007 4.691685 CACACATGGAATCCAAAAACATGG 59.308 41.667 5.89 0.00 42.28 3.66
1932 2008 5.849357 CACACATGGAATCCAAAAACATG 57.151 39.130 5.89 0.86 43.29 3.21
1962 2038 1.134340 ACAATATTCGTAAGGCGGGCA 60.134 47.619 3.78 0.00 41.72 5.36
1973 2049 7.060748 CGTGTAGATGTAGGCTTACAATATTCG 59.939 40.741 13.14 12.36 42.72 3.34
1974 2050 7.328737 CCGTGTAGATGTAGGCTTACAATATTC 59.671 40.741 13.14 6.03 42.72 1.75
1978 2054 4.739735 GCCGTGTAGATGTAGGCTTACAAT 60.740 45.833 13.14 7.45 42.72 2.71
2001 2077 1.667236 TGCTTACCATGGCGATGAAG 58.333 50.000 13.04 7.90 0.00 3.02
2008 2084 2.042686 TGTGAGATGCTTACCATGGC 57.957 50.000 13.04 0.00 33.29 4.40
2020 2096 5.835280 AGGATTGAAAAGTTGGTTGTGAGAT 59.165 36.000 0.00 0.00 0.00 2.75
2021 2097 5.067674 CAGGATTGAAAAGTTGGTTGTGAGA 59.932 40.000 0.00 0.00 0.00 3.27
2022 2098 5.284079 CAGGATTGAAAAGTTGGTTGTGAG 58.716 41.667 0.00 0.00 0.00 3.51
2023 2099 4.099266 CCAGGATTGAAAAGTTGGTTGTGA 59.901 41.667 0.00 0.00 0.00 3.58
2024 2100 4.141959 ACCAGGATTGAAAAGTTGGTTGTG 60.142 41.667 0.00 0.00 35.15 3.33
2025 2101 4.030216 ACCAGGATTGAAAAGTTGGTTGT 58.970 39.130 0.00 0.00 35.15 3.32
2026 2102 4.670896 ACCAGGATTGAAAAGTTGGTTG 57.329 40.909 0.00 0.00 35.15 3.77
2027 2103 5.183140 CGATACCAGGATTGAAAAGTTGGTT 59.817 40.000 0.00 0.00 38.28 3.67
2028 2104 4.700213 CGATACCAGGATTGAAAAGTTGGT 59.300 41.667 0.00 0.00 39.81 3.67
2029 2105 4.700213 ACGATACCAGGATTGAAAAGTTGG 59.300 41.667 0.00 0.00 32.67 3.77
2030 2106 5.880054 ACGATACCAGGATTGAAAAGTTG 57.120 39.130 0.00 0.00 0.00 3.16
2031 2107 7.335627 TCATACGATACCAGGATTGAAAAGTT 58.664 34.615 0.00 0.00 0.00 2.66
2032 2108 6.884832 TCATACGATACCAGGATTGAAAAGT 58.115 36.000 0.00 0.00 0.00 2.66
2033 2109 7.657354 TGATCATACGATACCAGGATTGAAAAG 59.343 37.037 0.00 0.00 29.66 2.27
2034 2110 7.505258 TGATCATACGATACCAGGATTGAAAA 58.495 34.615 0.00 0.00 29.66 2.29
2035 2111 7.061566 TGATCATACGATACCAGGATTGAAA 57.938 36.000 0.00 0.00 29.66 2.69
2036 2112 6.664428 TGATCATACGATACCAGGATTGAA 57.336 37.500 0.00 0.00 29.66 2.69
2037 2113 6.633856 CATGATCATACGATACCAGGATTGA 58.366 40.000 8.15 0.00 29.66 2.57
2038 2114 5.292834 GCATGATCATACGATACCAGGATTG 59.707 44.000 8.15 0.00 29.66 2.67
2039 2115 5.188555 AGCATGATCATACGATACCAGGATT 59.811 40.000 8.15 0.00 29.66 3.01
2040 2116 4.713814 AGCATGATCATACGATACCAGGAT 59.286 41.667 8.15 0.00 29.66 3.24
2041 2117 4.082026 CAGCATGATCATACGATACCAGGA 60.082 45.833 8.15 0.00 39.69 3.86
2042 2118 4.082026 TCAGCATGATCATACGATACCAGG 60.082 45.833 8.15 0.00 42.56 4.45
2043 2119 5.064441 TCAGCATGATCATACGATACCAG 57.936 43.478 8.15 0.00 42.56 4.00
2060 2136 7.048629 TCTAAATGTGGTTTTCAAATCAGCA 57.951 32.000 0.00 0.00 27.88 4.41
2061 2137 7.945033 TTCTAAATGTGGTTTTCAAATCAGC 57.055 32.000 0.00 0.00 27.88 4.26
2103 2179 7.338710 TGCAGCTAAAGGACATATTTCTTAGT 58.661 34.615 0.00 0.00 0.00 2.24
2106 2182 7.651027 ATTGCAGCTAAAGGACATATTTCTT 57.349 32.000 0.00 0.00 0.00 2.52
2112 2188 6.288294 ACGATAATTGCAGCTAAAGGACATA 58.712 36.000 0.00 0.00 0.00 2.29
2145 2223 7.815840 ACTAGATCCTGGTATCATATGATCG 57.184 40.000 21.42 8.89 36.05 3.69
2147 2225 9.142014 GCTTACTAGATCCTGGTATCATATGAT 57.858 37.037 21.50 21.50 38.51 2.45
2282 2371 6.913170 TCACATTCTTCTAGGTGCAAATTTC 58.087 36.000 0.00 0.00 0.00 2.17
2286 2375 5.316167 ACATCACATTCTTCTAGGTGCAAA 58.684 37.500 0.00 0.00 0.00 3.68
2310 2399 2.097110 ACACCTGGTAGTTCACTCCA 57.903 50.000 0.00 0.00 0.00 3.86
2316 2405 2.548480 GCTTGTCAACACCTGGTAGTTC 59.452 50.000 0.00 0.00 0.00 3.01
2319 2408 2.254546 TGCTTGTCAACACCTGGTAG 57.745 50.000 0.00 0.00 0.00 3.18
2379 2468 1.375013 GTTCCGTACCGTGCACCAT 60.375 57.895 12.15 1.51 0.00 3.55
2380 2469 2.029369 GTTCCGTACCGTGCACCA 59.971 61.111 12.15 0.00 0.00 4.17
2394 2483 0.454957 GGTGTGATGCGTGCATGTTC 60.455 55.000 12.81 5.97 36.70 3.18
2408 2497 4.298332 GAAACAAAGCAACCATAGGTGTG 58.702 43.478 0.00 0.00 35.34 3.82
2418 2507 6.849588 AATCATTGAAGGAAACAAAGCAAC 57.150 33.333 0.00 0.00 0.00 4.17
2451 2540 9.069078 CACATGTGAGATTATTTTGTTAGCAAG 57.931 33.333 21.64 0.00 35.82 4.01
2456 2545 9.571810 GATTGCACATGTGAGATTATTTTGTTA 57.428 29.630 29.80 0.00 0.00 2.41
2458 2547 7.604549 TGATTGCACATGTGAGATTATTTTGT 58.395 30.769 29.80 0.00 0.00 2.83
2459 2548 8.642908 ATGATTGCACATGTGAGATTATTTTG 57.357 30.769 29.80 0.00 0.00 2.44
2460 2549 9.961265 CTATGATTGCACATGTGAGATTATTTT 57.039 29.630 29.80 7.29 0.00 1.82
2481 2579 4.908601 TTGGAGGAGCTTCAAACTATGA 57.091 40.909 0.00 0.00 35.85 2.15
2498 2596 3.388024 CCTTCCTCCTATTCGTGATTGGA 59.612 47.826 5.15 5.15 37.33 3.53
2534 2635 5.010282 GGTGTAGTTGATCCATGGAGTTTT 58.990 41.667 21.33 2.32 0.00 2.43
2539 2640 1.484653 CCGGTGTAGTTGATCCATGGA 59.515 52.381 18.88 18.88 0.00 3.41
2546 2647 2.561478 AAACAGCCGGTGTAGTTGAT 57.439 45.000 1.90 0.00 39.03 2.57
2591 2692 6.949352 TCTTCCTTTCTGCATTTGATATCC 57.051 37.500 0.00 0.00 0.00 2.59
2594 2695 7.281774 GTCTCATCTTCCTTTCTGCATTTGATA 59.718 37.037 0.00 0.00 0.00 2.15
2600 2701 4.260170 GTGTCTCATCTTCCTTTCTGCAT 58.740 43.478 0.00 0.00 0.00 3.96
2663 2764 3.385384 CGCTCCCACTGCTCTGGA 61.385 66.667 2.02 0.00 32.30 3.86
2666 2767 2.283532 ACTCGCTCCCACTGCTCT 60.284 61.111 0.00 0.00 0.00 4.09
2732 3268 8.737168 TGTTTCTATTATTCATGGGAACTCAG 57.263 34.615 0.00 0.00 35.46 3.35
2735 3271 7.342026 GGGTTGTTTCTATTATTCATGGGAACT 59.658 37.037 0.00 0.00 35.46 3.01
2783 3319 9.442047 TTTTCTGGTGTGTTATTCAATGTTTTT 57.558 25.926 0.00 0.00 0.00 1.94
2784 3320 9.612066 ATTTTCTGGTGTGTTATTCAATGTTTT 57.388 25.926 0.00 0.00 0.00 2.43
2854 3390 8.786826 ATACAATATGAGTCCAACTTCGAAAA 57.213 30.769 0.00 0.00 0.00 2.29
2865 3403 9.337396 TGTATGGTTTTGATACAATATGAGTCC 57.663 33.333 0.00 0.00 34.15 3.85
2872 3410 9.521841 TTTCCTGTGTATGGTTTTGATACAATA 57.478 29.630 0.00 0.00 37.89 1.90
2887 3425 6.815142 GTGGACGTAAATAGTTTCCTGTGTAT 59.185 38.462 0.00 0.00 0.00 2.29
2890 3428 4.992319 TGTGGACGTAAATAGTTTCCTGTG 59.008 41.667 0.00 0.00 0.00 3.66
2892 3430 4.992319 TGTGTGGACGTAAATAGTTTCCTG 59.008 41.667 0.00 0.00 0.00 3.86
2893 3431 4.992951 GTGTGTGGACGTAAATAGTTTCCT 59.007 41.667 0.00 0.00 0.00 3.36
2905 3443 0.179234 TGGATTGTGTGTGTGGACGT 59.821 50.000 0.00 0.00 0.00 4.34
2918 3456 8.058667 TCCATAATTTAGCTGCATATGGATTG 57.941 34.615 19.87 0.00 44.26 2.67
2921 3459 6.656270 CAGTCCATAATTTAGCTGCATATGGA 59.344 38.462 19.87 19.87 45.95 3.41
2922 3460 6.127814 CCAGTCCATAATTTAGCTGCATATGG 60.128 42.308 17.12 17.12 42.76 2.74
2923 3461 6.127814 CCCAGTCCATAATTTAGCTGCATATG 60.128 42.308 1.02 0.00 0.00 1.78
2924 3462 5.948162 CCCAGTCCATAATTTAGCTGCATAT 59.052 40.000 1.02 0.00 0.00 1.78
2933 3471 6.951198 ACATTTGTCACCCAGTCCATAATTTA 59.049 34.615 0.00 0.00 0.00 1.40
2951 3489 4.630111 ACCGAAATTTGCATGACATTTGT 58.370 34.783 0.00 0.00 0.00 2.83
2970 3598 4.657824 ACAACTGGGACGCGACCG 62.658 66.667 20.87 10.94 41.14 4.79
2973 3601 0.745128 AACAAACAACTGGGACGCGA 60.745 50.000 15.93 0.00 0.00 5.87
3035 3663 2.292719 GGGTGACTAGGACTAAGGGGAA 60.293 54.545 0.00 0.00 0.00 3.97
3039 3667 5.189934 AGAAATTGGGTGACTAGGACTAAGG 59.810 44.000 0.00 0.00 0.00 2.69
3041 3669 6.472887 CAAGAAATTGGGTGACTAGGACTAA 58.527 40.000 0.00 0.00 0.00 2.24
3042 3670 5.570844 GCAAGAAATTGGGTGACTAGGACTA 60.571 44.000 0.00 0.00 0.00 2.59
3048 3676 2.819608 GCAGCAAGAAATTGGGTGACTA 59.180 45.455 0.00 0.00 32.03 2.59
3050 3678 1.337167 GGCAGCAAGAAATTGGGTGAC 60.337 52.381 0.00 0.00 32.03 3.67
3096 3724 5.233988 TGGTTTGGCAAAATAACAGCATAC 58.766 37.500 15.29 0.00 0.00 2.39
3102 3730 5.059833 GGATGTTGGTTTGGCAAAATAACA 58.940 37.500 29.32 29.32 38.46 2.41
3127 3755 3.461085 AGGTCCGTAACTCACCCTATCTA 59.539 47.826 0.00 0.00 0.00 1.98
3188 3828 7.066887 ACAAGACAATACATGGATTGCGAAATA 59.933 33.333 27.38 0.00 39.94 1.40
3252 3892 8.602328 GCTCTATTATGCTGCAATCATACTAAG 58.398 37.037 6.36 0.00 0.00 2.18
3257 3897 8.071177 TCTAGCTCTATTATGCTGCAATCATA 57.929 34.615 6.36 2.68 40.08 2.15
3420 4061 3.247411 CGCGTGATGACATTTGGCTATAA 59.753 43.478 0.00 0.00 0.00 0.98
3422 4063 1.599071 CGCGTGATGACATTTGGCTAT 59.401 47.619 0.00 0.00 0.00 2.97
3431 4072 2.432456 GTGGAGCGCGTGATGACA 60.432 61.111 8.43 0.00 0.00 3.58
3439 4080 1.805945 GACAACTAGGTGGAGCGCG 60.806 63.158 13.49 0.00 0.00 6.86
3442 4083 4.538746 AAACTAGACAACTAGGTGGAGC 57.461 45.455 13.49 0.90 44.78 4.70
3443 4084 6.159988 CAGAAAACTAGACAACTAGGTGGAG 58.840 44.000 13.49 8.76 44.78 3.86
3456 4097 1.346395 TCTTGGCGGCAGAAAACTAGA 59.654 47.619 12.87 7.52 0.00 2.43
3509 4150 9.953697 CATGAAACAATCCAAATTTGACAAAAT 57.046 25.926 19.86 0.00 37.61 1.82
3515 4156 7.986320 ACTTGTCATGAAACAATCCAAATTTGA 59.014 29.630 19.86 6.29 38.41 2.69
3561 4202 1.078848 CTGCCTCTTCGGGGACTTG 60.079 63.158 0.00 0.00 0.00 3.16
3562 4203 2.960688 GCTGCCTCTTCGGGGACTT 61.961 63.158 0.00 0.00 0.00 3.01
3567 4208 2.034066 TTTGGCTGCCTCTTCGGG 59.966 61.111 21.03 0.00 0.00 5.14
3570 4211 0.679321 CCTCCTTTGGCTGCCTCTTC 60.679 60.000 21.03 0.00 0.00 2.87
3571 4212 1.136329 TCCTCCTTTGGCTGCCTCTT 61.136 55.000 21.03 0.00 0.00 2.85
3583 4224 2.044793 TCACCATTCCACTCCTCCTT 57.955 50.000 0.00 0.00 0.00 3.36
3592 4233 4.018490 CTCATGTTCCAATCACCATTCCA 58.982 43.478 0.00 0.00 0.00 3.53
3597 4238 2.374839 TCACCTCATGTTCCAATCACCA 59.625 45.455 0.00 0.00 0.00 4.17
3610 4251 1.414181 CAATCCTAGCCGTCACCTCAT 59.586 52.381 0.00 0.00 0.00 2.90
3611 4252 0.824109 CAATCCTAGCCGTCACCTCA 59.176 55.000 0.00 0.00 0.00 3.86
3613 4254 1.972660 GCCAATCCTAGCCGTCACCT 61.973 60.000 0.00 0.00 0.00 4.00
3633 4274 1.466856 CTGGGGTGTGATGATTGGTG 58.533 55.000 0.00 0.00 0.00 4.17
3634 4275 0.323725 GCTGGGGTGTGATGATTGGT 60.324 55.000 0.00 0.00 0.00 3.67
3635 4276 1.039233 GGCTGGGGTGTGATGATTGG 61.039 60.000 0.00 0.00 0.00 3.16
3636 4277 1.378882 CGGCTGGGGTGTGATGATTG 61.379 60.000 0.00 0.00 0.00 2.67
3637 4278 1.077501 CGGCTGGGGTGTGATGATT 60.078 57.895 0.00 0.00 0.00 2.57
3638 4279 2.591753 CGGCTGGGGTGTGATGAT 59.408 61.111 0.00 0.00 0.00 2.45
3639 4280 4.408821 GCGGCTGGGGTGTGATGA 62.409 66.667 0.00 0.00 0.00 2.92
3661 4302 2.034879 GTCATGGCTGTGTGGACGG 61.035 63.158 0.00 0.00 0.00 4.79
3662 4303 2.034879 GGTCATGGCTGTGTGGACG 61.035 63.158 0.00 0.00 0.00 4.79
3663 4304 1.073025 TGGTCATGGCTGTGTGGAC 59.927 57.895 0.00 0.00 0.00 4.02
3664 4305 1.073025 GTGGTCATGGCTGTGTGGA 59.927 57.895 0.00 0.00 0.00 4.02
3665 4306 1.973281 GGTGGTCATGGCTGTGTGG 60.973 63.158 0.00 0.00 0.00 4.17
3666 4307 1.228215 TGGTGGTCATGGCTGTGTG 60.228 57.895 0.00 0.00 0.00 3.82
3667 4308 1.073722 CTGGTGGTCATGGCTGTGT 59.926 57.895 0.00 0.00 0.00 3.72
3668 4309 1.676635 CCTGGTGGTCATGGCTGTG 60.677 63.158 0.00 0.00 0.00 3.66
3669 4310 2.759114 CCTGGTGGTCATGGCTGT 59.241 61.111 0.00 0.00 0.00 4.40
3670 4311 2.753043 GCCTGGTGGTCATGGCTG 60.753 66.667 0.00 0.00 41.92 4.85
3671 4312 2.844195 TTGCCTGGTGGTCATGGCT 61.844 57.895 0.00 0.00 45.11 4.75
3672 4313 2.283101 TTGCCTGGTGGTCATGGC 60.283 61.111 0.00 0.00 45.10 4.40
3673 4314 1.228521 TGTTGCCTGGTGGTCATGG 60.229 57.895 0.00 0.00 35.27 3.66
3674 4315 0.822944 TGTGTTGCCTGGTGGTCATG 60.823 55.000 0.00 0.00 35.27 3.07
3675 4316 0.112995 ATGTGTTGCCTGGTGGTCAT 59.887 50.000 0.00 0.00 35.27 3.06
3676 4317 0.822944 CATGTGTTGCCTGGTGGTCA 60.823 55.000 0.00 0.00 35.27 4.02
3677 4318 0.537143 TCATGTGTTGCCTGGTGGTC 60.537 55.000 0.00 0.00 35.27 4.02
3678 4319 0.538057 CTCATGTGTTGCCTGGTGGT 60.538 55.000 0.00 0.00 35.27 4.16
3679 4320 1.870055 GCTCATGTGTTGCCTGGTGG 61.870 60.000 0.00 0.00 0.00 4.61
3680 4321 1.582968 GCTCATGTGTTGCCTGGTG 59.417 57.895 0.00 0.00 0.00 4.17
3681 4322 1.968017 CGCTCATGTGTTGCCTGGT 60.968 57.895 0.00 0.00 0.00 4.00
3682 4323 2.872557 CGCTCATGTGTTGCCTGG 59.127 61.111 0.00 0.00 0.00 4.45
3683 4324 2.177531 GCGCTCATGTGTTGCCTG 59.822 61.111 0.00 0.00 0.00 4.85
3684 4325 3.425713 CGCGCTCATGTGTTGCCT 61.426 61.111 5.56 0.00 0.00 4.75
3685 4326 3.372676 CTCGCGCTCATGTGTTGCC 62.373 63.158 5.56 0.00 0.00 4.52
3686 4327 2.097160 CTCGCGCTCATGTGTTGC 59.903 61.111 5.56 0.00 0.00 4.17
3687 4328 2.097160 GCTCGCGCTCATGTGTTG 59.903 61.111 5.56 0.00 0.00 3.33
3688 4329 2.047844 AGCTCGCGCTCATGTGTT 60.048 55.556 5.56 0.00 45.15 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.