Multiple sequence alignment - TraesCS6D01G405200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G405200 chr6D 100.000 4181 0 0 1 4181 472524116 472528296 0.000000e+00 7721.0
1 TraesCS6D01G405200 chr6B 92.040 3128 184 28 492 3575 717537164 717540270 0.000000e+00 4337.0
2 TraesCS6D01G405200 chr6B 87.050 417 24 7 3672 4081 717540340 717540733 1.070000e-120 444.0
3 TraesCS6D01G405200 chr6B 86.702 188 25 0 1143 1330 717543503 717543690 4.240000e-50 209.0
4 TraesCS6D01G405200 chr6B 81.557 244 34 11 238 477 659509274 659509510 1.530000e-44 191.0
5 TraesCS6D01G405200 chr6A 91.452 2948 200 24 492 3408 617184773 617181847 0.000000e+00 4000.0
6 TraesCS6D01G405200 chr6A 93.993 283 10 6 3834 4113 617178488 617178210 5.000000e-114 422.0
7 TraesCS6D01G405200 chr6A 93.609 266 10 4 3390 3649 617179344 617179080 1.410000e-104 390.0
8 TraesCS6D01G405200 chr6A 94.012 167 8 2 3642 3807 617178898 617178733 6.940000e-63 252.0
9 TraesCS6D01G405200 chr6A 83.660 153 18 6 14 159 617185049 617184897 2.030000e-28 137.0
10 TraesCS6D01G405200 chr6A 82.993 147 24 1 1137 1283 617176197 617176052 9.430000e-27 132.0
11 TraesCS6D01G405200 chr6A 76.923 143 23 7 3929 4066 77989446 77989309 5.800000e-09 73.1
12 TraesCS6D01G405200 chr6A 76.923 143 24 7 3929 4066 78138520 78138382 5.800000e-09 73.1
13 TraesCS6D01G405200 chr7B 79.421 622 128 0 2543 3164 734685845 734686466 1.380000e-119 440.0
14 TraesCS6D01G405200 chr7B 80.753 239 32 13 245 477 214076485 214076715 1.550000e-39 174.0
15 TraesCS6D01G405200 chr7B 100.000 46 0 0 4082 4127 654337170 654337215 7.450000e-13 86.1
16 TraesCS6D01G405200 chr7B 92.727 55 3 1 4082 4136 618110799 618110746 1.250000e-10 78.7
17 TraesCS6D01G405200 chr7B 95.745 47 2 0 4081 4127 617879040 617878994 4.480000e-10 76.8
18 TraesCS6D01G405200 chr7B 91.228 57 4 1 4082 4138 617947782 617947727 4.480000e-10 76.8
19 TraesCS6D01G405200 chr7B 93.878 49 2 1 4079 4127 618099427 618099380 5.800000e-09 73.1
20 TraesCS6D01G405200 chr7A 79.133 623 128 2 2543 3164 727848923 727848302 2.990000e-116 429.0
21 TraesCS6D01G405200 chr7A 82.039 206 32 4 273 477 578974874 578974673 2.000000e-38 171.0
22 TraesCS6D01G405200 chr7D 78.880 625 126 5 2543 3164 638261742 638262363 6.460000e-113 418.0
23 TraesCS6D01G405200 chr4A 83.258 221 33 3 251 471 703158231 703158447 2.550000e-47 200.0
24 TraesCS6D01G405200 chr4A 94.000 50 3 0 4082 4131 82395159 82395110 4.480000e-10 76.8
25 TraesCS6D01G405200 chr2A 82.083 240 33 9 242 476 730033437 730033203 3.300000e-46 196.0
26 TraesCS6D01G405200 chr2A 80.913 241 37 8 241 477 1502073 1501838 9.230000e-42 182.0
27 TraesCS6D01G405200 chr3B 81.513 238 34 9 244 477 653137300 653137531 1.980000e-43 187.0
28 TraesCS6D01G405200 chr1B 80.591 237 36 9 245 477 147124736 147124506 1.550000e-39 174.0
29 TraesCS6D01G405200 chr2D 80.000 235 39 6 244 476 547149109 547148881 2.590000e-37 167.0
30 TraesCS6D01G405200 chr3A 97.872 47 1 0 4082 4128 726128662 726128708 9.630000e-12 82.4
31 TraesCS6D01G405200 chrUn 95.652 46 2 0 4082 4127 362901736 362901691 1.610000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G405200 chr6D 472524116 472528296 4180 False 7721.000000 7721 100.000000 1 4181 1 chr6D.!!$F1 4180
1 TraesCS6D01G405200 chr6B 717537164 717543690 6526 False 1663.333333 4337 88.597333 492 4081 3 chr6B.!!$F2 3589
2 TraesCS6D01G405200 chr6A 617176052 617185049 8997 True 888.833333 4000 89.953167 14 4113 6 chr6A.!!$R3 4099
3 TraesCS6D01G405200 chr7B 734685845 734686466 621 False 440.000000 440 79.421000 2543 3164 1 chr7B.!!$F3 621
4 TraesCS6D01G405200 chr7A 727848302 727848923 621 True 429.000000 429 79.133000 2543 3164 1 chr7A.!!$R2 621
5 TraesCS6D01G405200 chr7D 638261742 638262363 621 False 418.000000 418 78.880000 2543 3164 1 chr7D.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 461 0.105224 TCGTCGGAAGCCTGAAACAA 59.895 50.0 0.00 0.0 0.0 2.83 F
1441 1522 0.389948 GTCGACCGGCATGTTTCTCT 60.390 55.0 3.51 0.0 0.0 3.10 F
1917 2001 0.744874 GTAGCATGCTCGACCACCTA 59.255 55.0 26.57 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 1976 0.390860 GTCGAGCATGCTACCCATCT 59.609 55.000 22.74 0.0 29.71 2.90 R
2538 2631 0.396435 TGATGCCGGAGAACTGTTGT 59.604 50.000 5.05 0.0 0.00 3.32 R
3620 6275 1.683385 GTTGCTTGCAATATCCTCCCC 59.317 52.381 11.32 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 7.763172 TTTTTGTTTGACCACATACATGTTC 57.237 32.000 2.30 0.00 39.39 3.18
74 75 6.456795 TTTGTTTGACCACATACATGTTCA 57.543 33.333 2.30 0.00 39.39 3.18
76 77 6.011476 TGTTTGACCACATACATGTTCATG 57.989 37.500 2.30 5.25 39.39 3.07
77 78 5.534278 TGTTTGACCACATACATGTTCATGT 59.466 36.000 19.83 19.83 39.39 3.21
78 79 5.878332 TTGACCACATACATGTTCATGTC 57.122 39.130 19.58 9.03 39.39 3.06
81 83 4.922206 ACCACATACATGTTCATGTCCTT 58.078 39.130 19.58 6.06 39.39 3.36
84 86 7.118723 ACCACATACATGTTCATGTCCTTTAT 58.881 34.615 19.58 6.94 39.39 1.40
95 97 4.891168 TCATGTCCTTTATCTGCATGCAAT 59.109 37.500 22.88 18.77 37.44 3.56
130 133 9.581099 GATAACGAAATAATTTTGTGATTGGGT 57.419 29.630 0.00 0.00 37.34 4.51
131 134 7.650834 AACGAAATAATTTTGTGATTGGGTG 57.349 32.000 0.00 0.00 37.34 4.61
141 144 9.844257 AATTTTGTGATTGGGTGAAAATAAAGA 57.156 25.926 0.00 0.00 0.00 2.52
142 145 8.885494 TTTTGTGATTGGGTGAAAATAAAGAG 57.115 30.769 0.00 0.00 0.00 2.85
143 146 7.595819 TTGTGATTGGGTGAAAATAAAGAGT 57.404 32.000 0.00 0.00 0.00 3.24
144 147 6.980593 TGTGATTGGGTGAAAATAAAGAGTG 58.019 36.000 0.00 0.00 0.00 3.51
145 148 6.549364 TGTGATTGGGTGAAAATAAAGAGTGT 59.451 34.615 0.00 0.00 0.00 3.55
147 150 7.595130 GTGATTGGGTGAAAATAAAGAGTGTTC 59.405 37.037 0.00 0.00 0.00 3.18
149 152 6.877611 TGGGTGAAAATAAAGAGTGTTCTC 57.122 37.500 0.00 0.00 40.70 2.87
150 153 5.768164 TGGGTGAAAATAAAGAGTGTTCTCC 59.232 40.000 0.00 0.00 41.26 3.71
151 154 5.768164 GGGTGAAAATAAAGAGTGTTCTCCA 59.232 40.000 0.00 0.00 41.26 3.86
152 155 6.264518 GGGTGAAAATAAAGAGTGTTCTCCAA 59.735 38.462 0.00 0.00 41.26 3.53
153 156 7.201875 GGGTGAAAATAAAGAGTGTTCTCCAAA 60.202 37.037 0.00 0.00 41.26 3.28
154 157 8.194769 GGTGAAAATAAAGAGTGTTCTCCAAAA 58.805 33.333 0.00 0.00 41.26 2.44
155 158 9.581099 GTGAAAATAAAGAGTGTTCTCCAAAAA 57.419 29.630 0.00 0.00 41.26 1.94
156 159 9.801873 TGAAAATAAAGAGTGTTCTCCAAAAAG 57.198 29.630 0.00 0.00 41.26 2.27
157 160 9.249457 GAAAATAAAGAGTGTTCTCCAAAAAGG 57.751 33.333 0.00 0.00 41.26 3.11
158 161 4.655762 AAAGAGTGTTCTCCAAAAAGGC 57.344 40.909 0.00 0.00 41.26 4.35
159 162 3.584733 AGAGTGTTCTCCAAAAAGGCT 57.415 42.857 0.00 0.00 41.26 4.58
160 163 4.706842 AGAGTGTTCTCCAAAAAGGCTA 57.293 40.909 0.00 0.00 41.26 3.93
161 164 4.390264 AGAGTGTTCTCCAAAAAGGCTAC 58.610 43.478 0.00 0.00 41.26 3.58
162 165 3.139077 AGTGTTCTCCAAAAAGGCTACG 58.861 45.455 0.00 0.00 37.29 3.51
163 166 2.225727 GTGTTCTCCAAAAAGGCTACGG 59.774 50.000 0.00 0.00 37.29 4.02
164 167 2.158726 TGTTCTCCAAAAAGGCTACGGT 60.159 45.455 0.00 0.00 37.29 4.83
165 168 2.882761 GTTCTCCAAAAAGGCTACGGTT 59.117 45.455 0.00 0.00 37.29 4.44
166 169 2.500229 TCTCCAAAAAGGCTACGGTTG 58.500 47.619 0.00 0.00 37.29 3.77
167 170 2.105134 TCTCCAAAAAGGCTACGGTTGA 59.895 45.455 0.00 0.00 37.29 3.18
168 171 2.882137 CTCCAAAAAGGCTACGGTTGAA 59.118 45.455 0.00 0.00 37.29 2.69
169 172 2.882137 TCCAAAAAGGCTACGGTTGAAG 59.118 45.455 0.00 0.00 37.29 3.02
170 173 2.607038 CCAAAAAGGCTACGGTTGAAGC 60.607 50.000 0.00 0.00 38.03 3.86
171 174 1.975660 AAAAGGCTACGGTTGAAGCA 58.024 45.000 4.00 0.00 40.61 3.91
172 175 1.235724 AAAGGCTACGGTTGAAGCAC 58.764 50.000 4.00 0.00 40.61 4.40
173 176 0.605589 AAGGCTACGGTTGAAGCACC 60.606 55.000 4.00 0.00 40.61 5.01
174 177 1.302192 GGCTACGGTTGAAGCACCA 60.302 57.895 4.00 0.00 40.61 4.17
175 178 0.887387 GGCTACGGTTGAAGCACCAA 60.887 55.000 4.00 0.00 40.61 3.67
176 179 0.948678 GCTACGGTTGAAGCACCAAA 59.051 50.000 0.00 0.00 38.63 3.28
177 180 1.334689 GCTACGGTTGAAGCACCAAAC 60.335 52.381 0.00 0.00 38.63 2.93
178 181 2.218603 CTACGGTTGAAGCACCAAACT 58.781 47.619 4.93 0.00 36.49 2.66
179 182 1.470051 ACGGTTGAAGCACCAAACTT 58.530 45.000 4.93 0.00 36.49 2.66
180 183 1.134175 ACGGTTGAAGCACCAAACTTG 59.866 47.619 4.93 0.00 36.49 3.16
181 184 1.134175 CGGTTGAAGCACCAAACTTGT 59.866 47.619 4.93 0.00 36.49 3.16
182 185 2.416701 CGGTTGAAGCACCAAACTTGTT 60.417 45.455 4.93 0.00 36.49 2.83
183 186 3.186909 GGTTGAAGCACCAAACTTGTTC 58.813 45.455 0.00 0.00 36.73 3.18
184 187 3.186909 GTTGAAGCACCAAACTTGTTCC 58.813 45.455 0.00 0.00 0.00 3.62
185 188 2.451490 TGAAGCACCAAACTTGTTCCA 58.549 42.857 0.00 0.00 0.00 3.53
186 189 3.030291 TGAAGCACCAAACTTGTTCCAT 58.970 40.909 0.00 0.00 0.00 3.41
187 190 3.181477 TGAAGCACCAAACTTGTTCCATG 60.181 43.478 0.00 0.00 0.00 3.66
188 191 2.387757 AGCACCAAACTTGTTCCATGT 58.612 42.857 0.00 0.00 0.00 3.21
189 192 2.362077 AGCACCAAACTTGTTCCATGTC 59.638 45.455 0.00 0.00 0.00 3.06
190 193 2.100584 GCACCAAACTTGTTCCATGTCA 59.899 45.455 0.00 0.00 0.00 3.58
191 194 3.430098 GCACCAAACTTGTTCCATGTCAA 60.430 43.478 0.00 0.00 0.00 3.18
192 195 4.753233 CACCAAACTTGTTCCATGTCAAA 58.247 39.130 0.00 0.00 0.00 2.69
193 196 5.174395 CACCAAACTTGTTCCATGTCAAAA 58.826 37.500 0.00 0.00 0.00 2.44
194 197 5.816777 CACCAAACTTGTTCCATGTCAAAAT 59.183 36.000 0.00 0.00 0.00 1.82
195 198 6.983307 CACCAAACTTGTTCCATGTCAAAATA 59.017 34.615 0.00 0.00 0.00 1.40
196 199 6.983890 ACCAAACTTGTTCCATGTCAAAATAC 59.016 34.615 0.00 0.00 0.00 1.89
197 200 6.983307 CCAAACTTGTTCCATGTCAAAATACA 59.017 34.615 0.00 0.00 0.00 2.29
201 204 9.612066 AACTTGTTCCATGTCAAAATACAAAAT 57.388 25.926 0.00 0.00 32.02 1.82
270 273 9.754382 TTTTCTTTTACATAGTACAGTCGAAGT 57.246 29.630 0.00 0.00 0.00 3.01
271 274 9.754382 TTTCTTTTACATAGTACAGTCGAAGTT 57.246 29.630 0.00 0.00 0.00 2.66
272 275 8.738199 TCTTTTACATAGTACAGTCGAAGTTG 57.262 34.615 0.00 0.00 0.00 3.16
273 276 6.939551 TTTACATAGTACAGTCGAAGTTGC 57.060 37.500 0.00 0.00 0.00 4.17
274 277 4.785511 ACATAGTACAGTCGAAGTTGCT 57.214 40.909 0.00 0.00 0.00 3.91
275 278 4.734917 ACATAGTACAGTCGAAGTTGCTC 58.265 43.478 0.00 0.00 0.00 4.26
276 279 4.217767 ACATAGTACAGTCGAAGTTGCTCA 59.782 41.667 0.00 0.00 0.00 4.26
277 280 3.014604 AGTACAGTCGAAGTTGCTCAC 57.985 47.619 0.00 0.00 0.00 3.51
278 281 2.361119 AGTACAGTCGAAGTTGCTCACA 59.639 45.455 0.00 0.00 0.00 3.58
279 282 2.533266 ACAGTCGAAGTTGCTCACAT 57.467 45.000 0.00 0.00 0.00 3.21
280 283 3.660501 ACAGTCGAAGTTGCTCACATA 57.339 42.857 0.00 0.00 0.00 2.29
281 284 3.318017 ACAGTCGAAGTTGCTCACATAC 58.682 45.455 0.00 0.00 0.00 2.39
282 285 3.243737 ACAGTCGAAGTTGCTCACATACA 60.244 43.478 0.00 0.00 0.00 2.29
283 286 3.121944 CAGTCGAAGTTGCTCACATACAC 59.878 47.826 0.00 0.00 0.00 2.90
284 287 3.057019 GTCGAAGTTGCTCACATACACA 58.943 45.455 0.00 0.00 0.00 3.72
285 288 3.493129 GTCGAAGTTGCTCACATACACAA 59.507 43.478 0.00 0.00 0.00 3.33
286 289 3.740832 TCGAAGTTGCTCACATACACAAG 59.259 43.478 0.00 0.00 0.00 3.16
288 291 2.154462 AGTTGCTCACATACACAAGCC 58.846 47.619 0.00 0.00 33.79 4.35
289 292 2.154462 GTTGCTCACATACACAAGCCT 58.846 47.619 0.00 0.00 33.79 4.58
290 293 3.007940 AGTTGCTCACATACACAAGCCTA 59.992 43.478 0.00 0.00 33.79 3.93
291 294 2.972625 TGCTCACATACACAAGCCTAC 58.027 47.619 0.00 0.00 33.79 3.18
292 295 2.301583 TGCTCACATACACAAGCCTACA 59.698 45.455 0.00 0.00 33.79 2.74
293 296 3.244387 TGCTCACATACACAAGCCTACAA 60.244 43.478 0.00 0.00 33.79 2.41
294 297 3.125316 GCTCACATACACAAGCCTACAAC 59.875 47.826 0.00 0.00 0.00 3.32
295 298 4.569943 CTCACATACACAAGCCTACAACT 58.430 43.478 0.00 0.00 0.00 3.16
296 299 4.968259 TCACATACACAAGCCTACAACTT 58.032 39.130 0.00 0.00 0.00 2.66
297 300 6.104146 TCACATACACAAGCCTACAACTTA 57.896 37.500 0.00 0.00 0.00 2.24
298 301 5.929992 TCACATACACAAGCCTACAACTTAC 59.070 40.000 0.00 0.00 0.00 2.34
299 302 5.121768 CACATACACAAGCCTACAACTTACC 59.878 44.000 0.00 0.00 0.00 2.85
300 303 3.136009 ACACAAGCCTACAACTTACCC 57.864 47.619 0.00 0.00 0.00 3.69
301 304 2.224695 ACACAAGCCTACAACTTACCCC 60.225 50.000 0.00 0.00 0.00 4.95
302 305 2.039879 CACAAGCCTACAACTTACCCCT 59.960 50.000 0.00 0.00 0.00 4.79
303 306 3.262405 CACAAGCCTACAACTTACCCCTA 59.738 47.826 0.00 0.00 0.00 3.53
304 307 4.080526 CACAAGCCTACAACTTACCCCTAT 60.081 45.833 0.00 0.00 0.00 2.57
305 308 4.080526 ACAAGCCTACAACTTACCCCTATG 60.081 45.833 0.00 0.00 0.00 2.23
306 309 4.003584 AGCCTACAACTTACCCCTATGA 57.996 45.455 0.00 0.00 0.00 2.15
307 310 4.368067 AGCCTACAACTTACCCCTATGAA 58.632 43.478 0.00 0.00 0.00 2.57
308 311 4.163649 AGCCTACAACTTACCCCTATGAAC 59.836 45.833 0.00 0.00 0.00 3.18
309 312 4.690122 CCTACAACTTACCCCTATGAACG 58.310 47.826 0.00 0.00 0.00 3.95
310 313 2.981898 ACAACTTACCCCTATGAACGC 58.018 47.619 0.00 0.00 0.00 4.84
311 314 1.931172 CAACTTACCCCTATGAACGCG 59.069 52.381 3.53 3.53 0.00 6.01
312 315 0.179092 ACTTACCCCTATGAACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
313 316 1.213094 CTTACCCCTATGAACGCGCG 61.213 60.000 30.96 30.96 0.00 6.86
314 317 3.778360 TACCCCTATGAACGCGCGC 62.778 63.158 32.58 23.91 0.00 6.86
328 331 2.733218 GCGCGCACACACAGTCTA 60.733 61.111 29.10 0.00 0.00 2.59
329 332 2.094659 GCGCGCACACACAGTCTAT 61.095 57.895 29.10 0.00 0.00 1.98
330 333 1.991430 CGCGCACACACAGTCTATC 59.009 57.895 8.75 0.00 0.00 2.08
331 334 1.413767 CGCGCACACACAGTCTATCC 61.414 60.000 8.75 0.00 0.00 2.59
332 335 1.084370 GCGCACACACAGTCTATCCC 61.084 60.000 0.30 0.00 0.00 3.85
333 336 0.532573 CGCACACACAGTCTATCCCT 59.467 55.000 0.00 0.00 0.00 4.20
334 337 1.749063 CGCACACACAGTCTATCCCTA 59.251 52.381 0.00 0.00 0.00 3.53
335 338 2.362397 CGCACACACAGTCTATCCCTAT 59.638 50.000 0.00 0.00 0.00 2.57
336 339 3.722147 GCACACACAGTCTATCCCTATG 58.278 50.000 0.00 0.00 0.00 2.23
337 340 3.384789 GCACACACAGTCTATCCCTATGA 59.615 47.826 0.00 0.00 0.00 2.15
338 341 4.500545 GCACACACAGTCTATCCCTATGAG 60.501 50.000 0.00 0.00 0.00 2.90
339 342 3.639094 ACACACAGTCTATCCCTATGAGC 59.361 47.826 0.00 0.00 0.00 4.26
340 343 3.638627 CACACAGTCTATCCCTATGAGCA 59.361 47.826 0.00 0.00 0.00 4.26
341 344 3.639094 ACACAGTCTATCCCTATGAGCAC 59.361 47.826 0.00 0.00 0.00 4.40
342 345 3.006323 CACAGTCTATCCCTATGAGCACC 59.994 52.174 0.00 0.00 0.00 5.01
343 346 3.116939 ACAGTCTATCCCTATGAGCACCT 60.117 47.826 0.00 0.00 0.00 4.00
344 347 3.900601 CAGTCTATCCCTATGAGCACCTT 59.099 47.826 0.00 0.00 0.00 3.50
345 348 4.021544 CAGTCTATCCCTATGAGCACCTTC 60.022 50.000 0.00 0.00 0.00 3.46
346 349 3.898123 GTCTATCCCTATGAGCACCTTCA 59.102 47.826 0.00 0.00 0.00 3.02
347 350 4.345257 GTCTATCCCTATGAGCACCTTCAA 59.655 45.833 0.00 0.00 0.00 2.69
348 351 3.853355 ATCCCTATGAGCACCTTCAAG 57.147 47.619 0.00 0.00 0.00 3.02
349 352 2.832838 TCCCTATGAGCACCTTCAAGA 58.167 47.619 0.00 0.00 0.00 3.02
350 353 2.768527 TCCCTATGAGCACCTTCAAGAG 59.231 50.000 0.00 0.00 0.00 2.85
351 354 2.768527 CCCTATGAGCACCTTCAAGAGA 59.231 50.000 0.00 0.00 0.00 3.10
352 355 3.431486 CCCTATGAGCACCTTCAAGAGAC 60.431 52.174 0.00 0.00 0.00 3.36
353 356 3.450457 CCTATGAGCACCTTCAAGAGACT 59.550 47.826 0.00 0.00 0.00 3.24
354 357 2.827800 TGAGCACCTTCAAGAGACTG 57.172 50.000 0.00 0.00 0.00 3.51
355 358 2.319844 TGAGCACCTTCAAGAGACTGA 58.680 47.619 0.00 0.00 0.00 3.41
356 359 2.298446 TGAGCACCTTCAAGAGACTGAG 59.702 50.000 0.00 0.00 0.00 3.35
357 360 1.001860 AGCACCTTCAAGAGACTGAGC 59.998 52.381 0.00 0.00 0.00 4.26
358 361 1.943507 GCACCTTCAAGAGACTGAGCC 60.944 57.143 0.00 0.00 0.00 4.70
359 362 0.605589 ACCTTCAAGAGACTGAGCCG 59.394 55.000 0.00 0.00 0.00 5.52
360 363 0.108424 CCTTCAAGAGACTGAGCCGG 60.108 60.000 0.00 0.00 0.00 6.13
361 364 0.739112 CTTCAAGAGACTGAGCCGGC 60.739 60.000 21.89 21.89 0.00 6.13
362 365 1.471829 TTCAAGAGACTGAGCCGGCA 61.472 55.000 31.54 7.98 0.00 5.69
363 366 1.220206 CAAGAGACTGAGCCGGCAT 59.780 57.895 31.54 14.28 0.00 4.40
364 367 0.461548 CAAGAGACTGAGCCGGCATA 59.538 55.000 31.54 16.21 0.00 3.14
365 368 0.749649 AAGAGACTGAGCCGGCATAG 59.250 55.000 31.54 26.79 0.00 2.23
366 369 1.300542 GAGACTGAGCCGGCATAGC 60.301 63.158 31.54 19.72 0.00 2.97
367 370 2.021068 GAGACTGAGCCGGCATAGCA 62.021 60.000 31.54 19.15 0.00 3.49
368 371 1.070445 GACTGAGCCGGCATAGCAT 59.930 57.895 31.54 6.18 0.00 3.79
369 372 0.948141 GACTGAGCCGGCATAGCATC 60.948 60.000 31.54 16.99 0.00 3.91
370 373 1.370437 CTGAGCCGGCATAGCATCT 59.630 57.895 31.54 4.27 0.00 2.90
371 374 0.250209 CTGAGCCGGCATAGCATCTT 60.250 55.000 31.54 3.33 0.00 2.40
372 375 0.533531 TGAGCCGGCATAGCATCTTG 60.534 55.000 31.54 0.00 0.00 3.02
373 376 0.250038 GAGCCGGCATAGCATCTTGA 60.250 55.000 31.54 0.00 0.00 3.02
374 377 0.181114 AGCCGGCATAGCATCTTGAA 59.819 50.000 31.54 0.00 0.00 2.69
375 378 1.024271 GCCGGCATAGCATCTTGAAA 58.976 50.000 24.80 0.00 0.00 2.69
376 379 1.610522 GCCGGCATAGCATCTTGAAAT 59.389 47.619 24.80 0.00 0.00 2.17
377 380 2.606308 GCCGGCATAGCATCTTGAAATG 60.606 50.000 24.80 0.00 0.00 2.32
378 381 2.620115 CCGGCATAGCATCTTGAAATGT 59.380 45.455 0.00 0.00 0.00 2.71
379 382 3.067180 CCGGCATAGCATCTTGAAATGTT 59.933 43.478 0.00 0.00 0.00 2.71
380 383 4.275689 CCGGCATAGCATCTTGAAATGTTA 59.724 41.667 0.00 0.00 0.00 2.41
381 384 5.207768 CGGCATAGCATCTTGAAATGTTAC 58.792 41.667 0.00 0.00 0.00 2.50
382 385 5.207768 GGCATAGCATCTTGAAATGTTACG 58.792 41.667 0.00 0.00 0.00 3.18
383 386 5.007626 GGCATAGCATCTTGAAATGTTACGA 59.992 40.000 0.00 0.00 0.00 3.43
384 387 6.458206 GGCATAGCATCTTGAAATGTTACGAA 60.458 38.462 0.00 0.00 0.00 3.85
385 388 6.630443 GCATAGCATCTTGAAATGTTACGAAG 59.370 38.462 0.00 0.00 0.00 3.79
387 390 6.170675 AGCATCTTGAAATGTTACGAAGTC 57.829 37.500 0.00 0.00 43.93 3.01
388 391 5.700832 AGCATCTTGAAATGTTACGAAGTCA 59.299 36.000 0.00 0.00 43.93 3.41
389 392 5.790495 GCATCTTGAAATGTTACGAAGTCAC 59.210 40.000 0.00 0.00 43.93 3.67
390 393 5.917541 TCTTGAAATGTTACGAAGTCACC 57.082 39.130 0.00 0.00 43.93 4.02
391 394 5.361427 TCTTGAAATGTTACGAAGTCACCA 58.639 37.500 0.00 0.00 43.93 4.17
392 395 5.995282 TCTTGAAATGTTACGAAGTCACCAT 59.005 36.000 0.00 0.00 43.93 3.55
393 396 7.156000 TCTTGAAATGTTACGAAGTCACCATA 58.844 34.615 0.00 0.00 43.93 2.74
394 397 6.961359 TGAAATGTTACGAAGTCACCATAG 57.039 37.500 0.00 0.00 43.93 2.23
395 398 6.693466 TGAAATGTTACGAAGTCACCATAGA 58.307 36.000 0.00 0.00 43.93 1.98
396 399 6.588756 TGAAATGTTACGAAGTCACCATAGAC 59.411 38.462 0.00 0.00 43.93 2.59
397 400 4.087510 TGTTACGAAGTCACCATAGACG 57.912 45.455 0.00 0.00 43.93 4.18
398 401 2.838386 TACGAAGTCACCATAGACGC 57.162 50.000 0.00 0.00 43.93 5.19
399 402 0.172803 ACGAAGTCACCATAGACGCC 59.827 55.000 0.00 0.00 43.24 5.68
400 403 0.456221 CGAAGTCACCATAGACGCCT 59.544 55.000 0.00 0.00 43.24 5.52
401 404 1.534175 CGAAGTCACCATAGACGCCTC 60.534 57.143 0.00 0.00 43.24 4.70
402 405 0.456221 AAGTCACCATAGACGCCTCG 59.544 55.000 0.00 0.00 43.24 4.63
403 406 1.589196 GTCACCATAGACGCCTCGC 60.589 63.158 0.00 0.00 0.00 5.03
404 407 2.049767 TCACCATAGACGCCTCGCA 61.050 57.895 0.00 0.00 0.00 5.10
405 408 1.589993 CACCATAGACGCCTCGCAG 60.590 63.158 0.00 0.00 0.00 5.18
406 409 2.052690 ACCATAGACGCCTCGCAGT 61.053 57.895 0.00 0.00 0.00 4.40
407 410 1.299468 CCATAGACGCCTCGCAGTC 60.299 63.158 0.00 0.00 34.33 3.51
408 411 1.655654 CATAGACGCCTCGCAGTCG 60.656 63.158 0.00 0.00 37.25 4.18
409 412 1.818363 ATAGACGCCTCGCAGTCGA 60.818 57.895 0.00 0.00 43.28 4.20
410 413 1.167155 ATAGACGCCTCGCAGTCGAT 61.167 55.000 0.00 0.00 44.56 3.59
411 414 2.048312 TAGACGCCTCGCAGTCGATG 62.048 60.000 0.00 0.00 44.56 3.84
412 415 4.498520 ACGCCTCGCAGTCGATGG 62.499 66.667 0.00 0.00 44.56 3.51
417 420 2.180769 TCGCAGTCGATGGGAACG 59.819 61.111 10.59 0.00 46.90 3.95
418 421 2.126071 CGCAGTCGATGGGAACGT 60.126 61.111 0.00 0.00 44.43 3.99
419 422 2.158959 CGCAGTCGATGGGAACGTC 61.159 63.158 0.00 0.00 44.43 4.34
420 423 1.215647 GCAGTCGATGGGAACGTCT 59.784 57.895 0.00 0.00 44.51 4.18
421 424 0.802607 GCAGTCGATGGGAACGTCTC 60.803 60.000 0.00 0.00 44.51 3.36
422 425 0.811915 CAGTCGATGGGAACGTCTCT 59.188 55.000 0.00 0.00 44.51 3.10
423 426 1.202582 CAGTCGATGGGAACGTCTCTT 59.797 52.381 0.00 0.00 44.51 2.85
424 427 1.473278 AGTCGATGGGAACGTCTCTTC 59.527 52.381 0.00 0.00 44.51 2.87
425 428 0.815734 TCGATGGGAACGTCTCTTCC 59.184 55.000 0.00 0.00 44.51 3.46
430 433 3.516578 GGAACGTCTCTTCCCACAG 57.483 57.895 0.00 0.00 34.59 3.66
431 434 0.966920 GGAACGTCTCTTCCCACAGA 59.033 55.000 0.00 0.00 34.59 3.41
432 435 1.343465 GGAACGTCTCTTCCCACAGAA 59.657 52.381 0.00 0.00 34.59 3.02
433 436 2.028020 GGAACGTCTCTTCCCACAGAAT 60.028 50.000 0.00 0.00 34.59 2.40
434 437 3.194968 GGAACGTCTCTTCCCACAGAATA 59.805 47.826 0.00 0.00 34.59 1.75
435 438 4.322499 GGAACGTCTCTTCCCACAGAATAA 60.322 45.833 0.00 0.00 34.59 1.40
436 439 4.884668 ACGTCTCTTCCCACAGAATAAA 57.115 40.909 0.00 0.00 32.82 1.40
437 440 4.566987 ACGTCTCTTCCCACAGAATAAAC 58.433 43.478 0.00 0.00 32.82 2.01
438 441 4.039973 ACGTCTCTTCCCACAGAATAAACA 59.960 41.667 0.00 0.00 32.82 2.83
439 442 5.178797 CGTCTCTTCCCACAGAATAAACAT 58.821 41.667 0.00 0.00 32.82 2.71
440 443 5.292101 CGTCTCTTCCCACAGAATAAACATC 59.708 44.000 0.00 0.00 32.82 3.06
441 444 5.292101 GTCTCTTCCCACAGAATAAACATCG 59.708 44.000 0.00 0.00 32.82 3.84
442 445 5.046591 TCTCTTCCCACAGAATAAACATCGT 60.047 40.000 0.00 0.00 32.82 3.73
443 446 5.175859 TCTTCCCACAGAATAAACATCGTC 58.824 41.667 0.00 0.00 32.82 4.20
444 447 3.517602 TCCCACAGAATAAACATCGTCG 58.482 45.455 0.00 0.00 0.00 5.12
445 448 2.607635 CCCACAGAATAAACATCGTCGG 59.392 50.000 0.00 0.00 0.00 4.79
446 449 3.517602 CCACAGAATAAACATCGTCGGA 58.482 45.455 0.00 0.00 0.00 4.55
447 450 3.930229 CCACAGAATAAACATCGTCGGAA 59.070 43.478 0.00 0.00 0.00 4.30
448 451 4.032900 CCACAGAATAAACATCGTCGGAAG 59.967 45.833 0.00 0.00 0.00 3.46
449 452 3.617263 ACAGAATAAACATCGTCGGAAGC 59.383 43.478 0.00 0.00 0.00 3.86
450 453 3.001330 CAGAATAAACATCGTCGGAAGCC 59.999 47.826 0.00 0.00 0.00 4.35
451 454 2.981859 ATAAACATCGTCGGAAGCCT 57.018 45.000 0.00 0.00 0.00 4.58
452 455 2.004583 TAAACATCGTCGGAAGCCTG 57.995 50.000 0.00 0.00 0.00 4.85
453 456 0.320374 AAACATCGTCGGAAGCCTGA 59.680 50.000 0.00 0.00 0.00 3.86
454 457 0.320374 AACATCGTCGGAAGCCTGAA 59.680 50.000 0.00 0.00 0.00 3.02
455 458 0.320374 ACATCGTCGGAAGCCTGAAA 59.680 50.000 0.00 0.00 0.00 2.69
456 459 0.721718 CATCGTCGGAAGCCTGAAAC 59.278 55.000 0.00 0.00 0.00 2.78
457 460 0.320374 ATCGTCGGAAGCCTGAAACA 59.680 50.000 0.00 0.00 0.00 2.83
458 461 0.105224 TCGTCGGAAGCCTGAAACAA 59.895 50.000 0.00 0.00 0.00 2.83
459 462 0.941542 CGTCGGAAGCCTGAAACAAA 59.058 50.000 0.00 0.00 0.00 2.83
460 463 1.535462 CGTCGGAAGCCTGAAACAAAT 59.465 47.619 0.00 0.00 0.00 2.32
461 464 2.412847 CGTCGGAAGCCTGAAACAAATC 60.413 50.000 0.00 0.00 0.00 2.17
462 465 2.095212 GTCGGAAGCCTGAAACAAATCC 60.095 50.000 0.00 0.00 0.00 3.01
463 466 1.885887 CGGAAGCCTGAAACAAATCCA 59.114 47.619 0.00 0.00 0.00 3.41
464 467 2.095059 CGGAAGCCTGAAACAAATCCAG 60.095 50.000 0.00 0.00 0.00 3.86
474 477 5.649557 TGAAACAAATCCAGGAATAATGCG 58.350 37.500 0.00 0.00 0.00 4.73
475 478 5.417266 TGAAACAAATCCAGGAATAATGCGA 59.583 36.000 0.00 0.00 0.00 5.10
476 479 5.505173 AACAAATCCAGGAATAATGCGAG 57.495 39.130 0.00 0.00 0.00 5.03
488 491 6.597672 AGGAATAATGCGAGTGAAAATGTACA 59.402 34.615 0.00 0.00 0.00 2.90
489 492 7.283127 AGGAATAATGCGAGTGAAAATGTACAT 59.717 33.333 1.41 1.41 0.00 2.29
490 493 7.376866 GGAATAATGCGAGTGAAAATGTACATG 59.623 37.037 9.63 0.00 0.00 3.21
494 529 8.432110 AATGCGAGTGAAAATGTACATGTATA 57.568 30.769 9.63 6.83 0.00 1.47
515 550 9.557338 TGTATATTTTTCCCGATTTTTGTAACG 57.443 29.630 0.00 0.00 0.00 3.18
574 609 0.790207 GAGCTGCGTTTCGAATGTCA 59.210 50.000 0.00 0.00 0.00 3.58
670 705 8.682128 TTATAAGCGAAATTTTTGACATGTCC 57.318 30.769 22.85 5.91 0.00 4.02
671 706 4.582701 AGCGAAATTTTTGACATGTCCA 57.417 36.364 22.85 9.66 0.00 4.02
674 709 4.505922 GCGAAATTTTTGACATGTCCACAA 59.494 37.500 22.85 11.86 0.00 3.33
940 1014 3.573967 TCCATCGATCAATTCATCTCCGA 59.426 43.478 0.00 0.00 0.00 4.55
990 1070 2.726850 TATTGCCGGACGATCGAGCG 62.727 60.000 23.12 23.12 37.29 5.03
1086 1167 4.148825 ACCATCGCCGGCTCACTC 62.149 66.667 26.68 0.00 0.00 3.51
1284 1365 2.204136 ATGCTCTGGTCCCCCACA 60.204 61.111 0.00 0.00 35.17 4.17
1365 1446 2.925724 CTCGTCCCTGTCTACATCTCT 58.074 52.381 0.00 0.00 0.00 3.10
1441 1522 0.389948 GTCGACCGGCATGTTTCTCT 60.390 55.000 3.51 0.00 0.00 3.10
1540 1621 2.669229 TGGTCTACGTCGCCGTCA 60.669 61.111 0.00 0.00 46.28 4.35
1606 1687 3.878667 GGATGAAGGAGGCCCGGG 61.879 72.222 19.09 19.09 37.58 5.73
1607 1688 3.090532 GATGAAGGAGGCCCGGGT 61.091 66.667 24.63 1.57 37.58 5.28
1623 1704 3.121030 GTCGTGCTGCGGATGCTT 61.121 61.111 0.00 0.00 43.34 3.91
1899 1983 4.101448 GGGCTGTCGCAGATGGGT 62.101 66.667 10.46 0.00 40.67 4.51
1908 1992 1.226686 CGCAGATGGGTAGCATGCTC 61.227 60.000 26.57 15.59 34.75 4.26
1917 2001 0.744874 GTAGCATGCTCGACCACCTA 59.255 55.000 26.57 0.00 0.00 3.08
1953 2037 4.821589 CTCCTCGGCGGCCTTCAC 62.822 72.222 18.34 0.00 0.00 3.18
1992 2079 4.264638 GGCAACGGCAACACGCTT 62.265 61.111 0.00 0.00 43.71 4.68
2004 2091 3.249917 CAACACGCTTTTCACCAACTTT 58.750 40.909 0.00 0.00 0.00 2.66
2081 2168 2.543012 CCAGCGATGATGATGACAAGAC 59.457 50.000 0.06 0.00 0.00 3.01
2083 2170 4.500375 CCAGCGATGATGATGACAAGACTA 60.500 45.833 0.06 0.00 0.00 2.59
2114 2201 1.201098 GGCGAAGACGACGTAGATGC 61.201 60.000 0.00 3.22 42.66 3.91
2149 2236 2.046988 CACTGCTGGACATGCGGA 60.047 61.111 1.34 0.00 39.85 5.54
2385 2478 3.558674 GCTCTACAGCACCACCAAT 57.441 52.632 0.00 0.00 46.06 3.16
2466 2559 3.621805 TGTCCGGCGGCAGAGAAA 61.622 61.111 23.83 0.00 0.00 2.52
2538 2631 1.412710 GGCGTGACAATCCAGATCCTA 59.587 52.381 0.00 0.00 0.00 2.94
2643 2736 2.363147 GGCCTGACCTCCGACTCT 60.363 66.667 0.00 0.00 34.51 3.24
2775 2868 1.833630 CCAGTGCTGATTGTCTCCCTA 59.166 52.381 0.02 0.00 0.00 3.53
2784 2877 1.938585 TTGTCTCCCTAGTGTCCCTG 58.061 55.000 0.00 0.00 0.00 4.45
3045 3138 1.220750 ACCGGGGTCTTCTCCATCTAT 59.779 52.381 6.32 0.00 0.00 1.98
3322 3418 5.547666 ACAATGGGGTACATAGATAGATGCA 59.452 40.000 0.00 0.00 39.40 3.96
3500 6122 7.442656 TCTTCTTCTCCTCGAAATGTAGTTTT 58.557 34.615 0.00 0.00 0.00 2.43
3620 6275 6.362551 TCTTCGTCTTTCTTCTATGTTCGTTG 59.637 38.462 0.00 0.00 0.00 4.10
3624 6279 4.285003 TCTTTCTTCTATGTTCGTTGGGGA 59.715 41.667 0.00 0.00 0.00 4.81
3703 6547 7.441760 TGTTTATAGTTGTCGAGTTGGCTTTAA 59.558 33.333 0.00 0.00 0.00 1.52
3704 6548 5.857822 ATAGTTGTCGAGTTGGCTTTAAC 57.142 39.130 0.00 0.00 0.00 2.01
4120 7188 8.980143 TTGATAAGCTACCTACAAAAATTTGC 57.020 30.769 5.82 0.00 41.79 3.68
4121 7189 8.116651 TGATAAGCTACCTACAAAAATTTGCA 57.883 30.769 5.82 0.00 41.79 4.08
4122 7190 8.580720 TGATAAGCTACCTACAAAAATTTGCAA 58.419 29.630 5.82 0.00 41.79 4.08
4123 7191 9.586435 GATAAGCTACCTACAAAAATTTGCAAT 57.414 29.630 0.00 0.00 41.79 3.56
4124 7192 7.889589 AAGCTACCTACAAAAATTTGCAATC 57.110 32.000 0.00 0.00 41.79 2.67
4125 7193 6.991938 AGCTACCTACAAAAATTTGCAATCA 58.008 32.000 0.00 0.00 41.79 2.57
4126 7194 7.441017 AGCTACCTACAAAAATTTGCAATCAA 58.559 30.769 0.00 0.00 41.79 2.57
4127 7195 7.930865 AGCTACCTACAAAAATTTGCAATCAAA 59.069 29.630 0.00 0.00 45.24 2.69
4128 7196 8.223100 GCTACCTACAAAAATTTGCAATCAAAG 58.777 33.333 0.00 0.00 44.47 2.77
4129 7197 7.495135 ACCTACAAAAATTTGCAATCAAAGG 57.505 32.000 0.00 2.58 44.47 3.11
4130 7198 7.278875 ACCTACAAAAATTTGCAATCAAAGGA 58.721 30.769 0.00 0.00 44.47 3.36
4131 7199 7.938490 ACCTACAAAAATTTGCAATCAAAGGAT 59.062 29.630 0.00 0.00 44.47 3.24
4132 7200 9.434420 CCTACAAAAATTTGCAATCAAAGGATA 57.566 29.630 0.00 0.00 44.47 2.59
4134 7202 8.674263 ACAAAAATTTGCAATCAAAGGATACA 57.326 26.923 0.00 0.00 44.47 2.29
4135 7203 9.287373 ACAAAAATTTGCAATCAAAGGATACAT 57.713 25.926 0.00 0.00 44.47 2.29
4142 7210 9.585099 TTTGCAATCAAAGGATACATAAATCAC 57.415 29.630 0.00 0.00 37.28 3.06
4143 7211 8.291191 TGCAATCAAAGGATACATAAATCACA 57.709 30.769 0.00 0.00 41.41 3.58
4144 7212 8.407832 TGCAATCAAAGGATACATAAATCACAG 58.592 33.333 0.00 0.00 41.41 3.66
4145 7213 8.623903 GCAATCAAAGGATACATAAATCACAGA 58.376 33.333 0.00 0.00 41.41 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.617041 ATTCACTAGCATTAAACTGTCTTCC 57.383 36.000 0.00 0.00 0.00 3.46
6 7 9.937175 GGAAATATTCACTAGCATTAAACTGTC 57.063 33.333 0.00 0.00 0.00 3.51
7 8 9.461312 TGGAAATATTCACTAGCATTAAACTGT 57.539 29.630 0.00 0.00 0.00 3.55
49 50 7.323420 TGAACATGTATGTGGTCAAACAAAAA 58.677 30.769 0.00 0.00 42.51 1.94
73 74 4.642445 TTGCATGCAGATAAAGGACATG 57.358 40.909 21.50 0.00 40.80 3.21
74 75 4.647853 ACATTGCATGCAGATAAAGGACAT 59.352 37.500 21.50 4.34 0.00 3.06
76 77 4.644103 ACATTGCATGCAGATAAAGGAC 57.356 40.909 21.50 0.00 0.00 3.85
77 78 5.185442 TGAAACATTGCATGCAGATAAAGGA 59.815 36.000 21.50 3.38 0.00 3.36
78 79 5.412640 TGAAACATTGCATGCAGATAAAGG 58.587 37.500 21.50 10.00 0.00 3.11
81 83 7.571080 TCTATGAAACATTGCATGCAGATAA 57.429 32.000 21.50 6.34 0.00 1.75
84 86 7.420002 GTTATCTATGAAACATTGCATGCAGA 58.580 34.615 21.50 12.42 0.00 4.26
106 108 8.577296 TCACCCAATCACAAAATTATTTCGTTA 58.423 29.630 0.00 0.00 0.00 3.18
109 112 7.881643 TTCACCCAATCACAAAATTATTTCG 57.118 32.000 0.00 0.00 0.00 3.46
121 124 6.981722 ACACTCTTTATTTTCACCCAATCAC 58.018 36.000 0.00 0.00 0.00 3.06
127 130 5.768164 TGGAGAACACTCTTTATTTTCACCC 59.232 40.000 0.00 0.00 29.54 4.61
130 133 9.801873 CTTTTTGGAGAACACTCTTTATTTTCA 57.198 29.630 0.00 0.00 29.54 2.69
131 134 9.249457 CCTTTTTGGAGAACACTCTTTATTTTC 57.751 33.333 0.00 0.00 38.35 2.29
136 139 5.445964 AGCCTTTTTGGAGAACACTCTTTA 58.554 37.500 0.00 0.00 38.35 1.85
140 143 3.186613 CGTAGCCTTTTTGGAGAACACTC 59.813 47.826 0.00 0.00 38.35 3.51
141 144 3.139077 CGTAGCCTTTTTGGAGAACACT 58.861 45.455 0.00 0.00 38.35 3.55
142 145 2.225727 CCGTAGCCTTTTTGGAGAACAC 59.774 50.000 0.00 0.00 38.35 3.32
143 146 2.158726 ACCGTAGCCTTTTTGGAGAACA 60.159 45.455 0.00 0.00 38.35 3.18
144 147 2.501261 ACCGTAGCCTTTTTGGAGAAC 58.499 47.619 0.00 0.00 38.35 3.01
145 148 2.882137 CAACCGTAGCCTTTTTGGAGAA 59.118 45.455 0.00 0.00 38.35 2.87
147 150 2.500229 TCAACCGTAGCCTTTTTGGAG 58.500 47.619 0.00 0.00 38.35 3.86
149 152 2.607038 GCTTCAACCGTAGCCTTTTTGG 60.607 50.000 0.00 0.00 39.35 3.28
150 153 2.034053 TGCTTCAACCGTAGCCTTTTTG 59.966 45.455 0.00 0.00 34.81 2.44
151 154 2.034179 GTGCTTCAACCGTAGCCTTTTT 59.966 45.455 0.00 0.00 34.81 1.94
152 155 1.607148 GTGCTTCAACCGTAGCCTTTT 59.393 47.619 0.00 0.00 34.81 2.27
153 156 1.235724 GTGCTTCAACCGTAGCCTTT 58.764 50.000 0.00 0.00 34.81 3.11
154 157 0.605589 GGTGCTTCAACCGTAGCCTT 60.606 55.000 0.00 0.00 34.81 4.35
155 158 1.003718 GGTGCTTCAACCGTAGCCT 60.004 57.895 0.00 0.00 34.81 4.58
156 159 0.887387 TTGGTGCTTCAACCGTAGCC 60.887 55.000 0.00 0.00 43.73 3.93
157 160 0.948678 TTTGGTGCTTCAACCGTAGC 59.051 50.000 0.00 0.00 43.73 3.58
158 161 2.218603 AGTTTGGTGCTTCAACCGTAG 58.781 47.619 0.00 0.00 43.73 3.51
159 162 2.335316 AGTTTGGTGCTTCAACCGTA 57.665 45.000 0.00 0.00 43.73 4.02
160 163 1.134175 CAAGTTTGGTGCTTCAACCGT 59.866 47.619 0.00 0.00 43.73 4.83
161 164 1.134175 ACAAGTTTGGTGCTTCAACCG 59.866 47.619 0.00 0.00 43.73 4.44
162 165 2.959507 ACAAGTTTGGTGCTTCAACC 57.040 45.000 0.00 0.00 40.94 3.77
163 166 3.186909 GGAACAAGTTTGGTGCTTCAAC 58.813 45.455 0.00 0.00 33.01 3.18
164 167 2.828520 TGGAACAAGTTTGGTGCTTCAA 59.171 40.909 3.13 0.00 37.11 2.69
165 168 2.451490 TGGAACAAGTTTGGTGCTTCA 58.549 42.857 3.13 0.00 37.11 3.02
180 183 9.202273 TGCTTATTTTGTATTTTGACATGGAAC 57.798 29.630 0.00 0.00 0.00 3.62
181 184 9.202273 GTGCTTATTTTGTATTTTGACATGGAA 57.798 29.630 0.00 0.00 0.00 3.53
182 185 7.816995 GGTGCTTATTTTGTATTTTGACATGGA 59.183 33.333 0.00 0.00 0.00 3.41
183 186 7.601886 TGGTGCTTATTTTGTATTTTGACATGG 59.398 33.333 0.00 0.00 0.00 3.66
184 187 8.531622 TGGTGCTTATTTTGTATTTTGACATG 57.468 30.769 0.00 0.00 0.00 3.21
185 188 9.553064 TTTGGTGCTTATTTTGTATTTTGACAT 57.447 25.926 0.00 0.00 0.00 3.06
186 189 8.821894 GTTTGGTGCTTATTTTGTATTTTGACA 58.178 29.630 0.00 0.00 0.00 3.58
187 190 9.040939 AGTTTGGTGCTTATTTTGTATTTTGAC 57.959 29.630 0.00 0.00 0.00 3.18
188 191 9.606631 AAGTTTGGTGCTTATTTTGTATTTTGA 57.393 25.926 0.00 0.00 0.00 2.69
189 192 9.649024 CAAGTTTGGTGCTTATTTTGTATTTTG 57.351 29.630 0.00 0.00 0.00 2.44
190 193 9.389755 ACAAGTTTGGTGCTTATTTTGTATTTT 57.610 25.926 0.00 0.00 0.00 1.82
191 194 8.956533 ACAAGTTTGGTGCTTATTTTGTATTT 57.043 26.923 0.00 0.00 0.00 1.40
192 195 8.956533 AACAAGTTTGGTGCTTATTTTGTATT 57.043 26.923 0.00 0.00 0.00 1.89
193 196 8.956533 AAACAAGTTTGGTGCTTATTTTGTAT 57.043 26.923 0.00 0.00 0.00 2.29
194 197 8.779354 AAAACAAGTTTGGTGCTTATTTTGTA 57.221 26.923 0.00 0.00 33.14 2.41
195 198 7.680442 AAAACAAGTTTGGTGCTTATTTTGT 57.320 28.000 0.00 0.00 33.14 2.83
245 248 9.754382 AACTTCGACTGTACTATGTAAAAGAAA 57.246 29.630 0.00 0.00 0.00 2.52
246 249 9.188588 CAACTTCGACTGTACTATGTAAAAGAA 57.811 33.333 0.00 0.00 0.00 2.52
248 251 7.328737 AGCAACTTCGACTGTACTATGTAAAAG 59.671 37.037 0.00 1.71 0.00 2.27
249 252 7.149973 AGCAACTTCGACTGTACTATGTAAAA 58.850 34.615 0.00 0.00 0.00 1.52
252 255 5.413523 TGAGCAACTTCGACTGTACTATGTA 59.586 40.000 0.00 0.00 0.00 2.29
253 256 4.217767 TGAGCAACTTCGACTGTACTATGT 59.782 41.667 0.00 0.00 0.00 2.29
254 257 4.559251 GTGAGCAACTTCGACTGTACTATG 59.441 45.833 0.00 0.00 0.00 2.23
255 258 4.217767 TGTGAGCAACTTCGACTGTACTAT 59.782 41.667 0.00 0.00 0.00 2.12
256 259 3.566742 TGTGAGCAACTTCGACTGTACTA 59.433 43.478 0.00 0.00 0.00 1.82
257 260 2.361119 TGTGAGCAACTTCGACTGTACT 59.639 45.455 0.00 0.00 0.00 2.73
258 261 2.739292 TGTGAGCAACTTCGACTGTAC 58.261 47.619 0.00 0.00 0.00 2.90
259 262 3.660501 ATGTGAGCAACTTCGACTGTA 57.339 42.857 0.00 0.00 0.00 2.74
260 263 2.533266 ATGTGAGCAACTTCGACTGT 57.467 45.000 0.00 0.00 0.00 3.55
261 264 3.121944 GTGTATGTGAGCAACTTCGACTG 59.878 47.826 0.00 0.00 0.00 3.51
262 265 3.243737 TGTGTATGTGAGCAACTTCGACT 60.244 43.478 0.00 0.00 0.00 4.18
263 266 3.057019 TGTGTATGTGAGCAACTTCGAC 58.943 45.455 0.00 0.00 0.00 4.20
265 268 3.665323 GCTTGTGTATGTGAGCAACTTCG 60.665 47.826 0.00 0.00 35.29 3.79
266 269 3.365364 GGCTTGTGTATGTGAGCAACTTC 60.365 47.826 0.00 0.00 36.87 3.01
269 272 2.154462 AGGCTTGTGTATGTGAGCAAC 58.846 47.619 0.00 0.00 36.87 4.17
270 273 2.566833 AGGCTTGTGTATGTGAGCAA 57.433 45.000 0.00 0.00 36.87 3.91
271 274 2.301583 TGTAGGCTTGTGTATGTGAGCA 59.698 45.455 0.00 0.00 36.87 4.26
272 275 2.972625 TGTAGGCTTGTGTATGTGAGC 58.027 47.619 0.00 0.00 0.00 4.26
273 276 4.569943 AGTTGTAGGCTTGTGTATGTGAG 58.430 43.478 0.00 0.00 0.00 3.51
274 277 4.617253 AGTTGTAGGCTTGTGTATGTGA 57.383 40.909 0.00 0.00 0.00 3.58
275 278 5.121768 GGTAAGTTGTAGGCTTGTGTATGTG 59.878 44.000 0.00 0.00 0.00 3.21
276 279 5.243207 GGTAAGTTGTAGGCTTGTGTATGT 58.757 41.667 0.00 0.00 0.00 2.29
277 280 4.634443 GGGTAAGTTGTAGGCTTGTGTATG 59.366 45.833 0.00 0.00 0.00 2.39
278 281 4.324022 GGGGTAAGTTGTAGGCTTGTGTAT 60.324 45.833 0.00 0.00 0.00 2.29
279 282 3.008266 GGGGTAAGTTGTAGGCTTGTGTA 59.992 47.826 0.00 0.00 0.00 2.90
280 283 2.224695 GGGGTAAGTTGTAGGCTTGTGT 60.225 50.000 0.00 0.00 0.00 3.72
281 284 2.039879 AGGGGTAAGTTGTAGGCTTGTG 59.960 50.000 0.00 0.00 0.00 3.33
282 285 2.345560 AGGGGTAAGTTGTAGGCTTGT 58.654 47.619 0.00 0.00 0.00 3.16
283 286 4.163458 TCATAGGGGTAAGTTGTAGGCTTG 59.837 45.833 0.00 0.00 0.00 4.01
284 287 4.368067 TCATAGGGGTAAGTTGTAGGCTT 58.632 43.478 0.00 0.00 0.00 4.35
285 288 4.003584 TCATAGGGGTAAGTTGTAGGCT 57.996 45.455 0.00 0.00 0.00 4.58
286 289 4.449131 GTTCATAGGGGTAAGTTGTAGGC 58.551 47.826 0.00 0.00 0.00 3.93
288 291 4.117685 GCGTTCATAGGGGTAAGTTGTAG 58.882 47.826 0.00 0.00 0.00 2.74
289 292 3.429272 CGCGTTCATAGGGGTAAGTTGTA 60.429 47.826 0.00 0.00 0.00 2.41
290 293 2.675889 CGCGTTCATAGGGGTAAGTTGT 60.676 50.000 0.00 0.00 0.00 3.32
291 294 1.931172 CGCGTTCATAGGGGTAAGTTG 59.069 52.381 0.00 0.00 0.00 3.16
292 295 1.741394 GCGCGTTCATAGGGGTAAGTT 60.741 52.381 8.43 0.00 0.00 2.66
293 296 0.179092 GCGCGTTCATAGGGGTAAGT 60.179 55.000 8.43 0.00 0.00 2.24
294 297 1.213094 CGCGCGTTCATAGGGGTAAG 61.213 60.000 24.19 0.00 0.00 2.34
295 298 1.227031 CGCGCGTTCATAGGGGTAA 60.227 57.895 24.19 0.00 0.00 2.85
296 299 2.414179 CGCGCGTTCATAGGGGTA 59.586 61.111 24.19 0.00 0.00 3.69
311 314 2.014093 GATAGACTGTGTGTGCGCGC 62.014 60.000 27.26 27.26 0.00 6.86
312 315 1.413767 GGATAGACTGTGTGTGCGCG 61.414 60.000 0.00 0.00 0.00 6.86
313 316 1.084370 GGGATAGACTGTGTGTGCGC 61.084 60.000 0.00 0.00 0.00 6.09
314 317 0.532573 AGGGATAGACTGTGTGTGCG 59.467 55.000 0.00 0.00 0.00 5.34
315 318 3.384789 TCATAGGGATAGACTGTGTGTGC 59.615 47.826 0.00 0.00 0.00 4.57
316 319 4.500545 GCTCATAGGGATAGACTGTGTGTG 60.501 50.000 0.00 0.00 0.00 3.82
317 320 3.639094 GCTCATAGGGATAGACTGTGTGT 59.361 47.826 0.00 0.00 0.00 3.72
318 321 3.638627 TGCTCATAGGGATAGACTGTGTG 59.361 47.826 0.00 0.00 0.00 3.82
319 322 3.639094 GTGCTCATAGGGATAGACTGTGT 59.361 47.826 0.00 0.00 0.00 3.72
320 323 3.006323 GGTGCTCATAGGGATAGACTGTG 59.994 52.174 0.00 0.00 0.00 3.66
321 324 3.116939 AGGTGCTCATAGGGATAGACTGT 60.117 47.826 0.00 0.00 0.00 3.55
322 325 3.505386 AGGTGCTCATAGGGATAGACTG 58.495 50.000 0.00 0.00 0.00 3.51
323 326 3.913370 AGGTGCTCATAGGGATAGACT 57.087 47.619 0.00 0.00 0.00 3.24
324 327 3.898123 TGAAGGTGCTCATAGGGATAGAC 59.102 47.826 0.00 0.00 0.00 2.59
325 328 4.199002 TGAAGGTGCTCATAGGGATAGA 57.801 45.455 0.00 0.00 0.00 1.98
326 329 4.590647 TCTTGAAGGTGCTCATAGGGATAG 59.409 45.833 0.00 0.00 0.00 2.08
327 330 4.556697 TCTTGAAGGTGCTCATAGGGATA 58.443 43.478 0.00 0.00 0.00 2.59
328 331 3.387962 TCTTGAAGGTGCTCATAGGGAT 58.612 45.455 0.00 0.00 0.00 3.85
329 332 2.768527 CTCTTGAAGGTGCTCATAGGGA 59.231 50.000 0.00 0.00 0.00 4.20
330 333 2.768527 TCTCTTGAAGGTGCTCATAGGG 59.231 50.000 0.00 0.00 0.00 3.53
331 334 3.450457 AGTCTCTTGAAGGTGCTCATAGG 59.550 47.826 0.00 0.00 0.00 2.57
332 335 4.159321 TCAGTCTCTTGAAGGTGCTCATAG 59.841 45.833 0.00 0.00 0.00 2.23
333 336 4.089361 TCAGTCTCTTGAAGGTGCTCATA 58.911 43.478 0.00 0.00 0.00 2.15
334 337 2.902486 TCAGTCTCTTGAAGGTGCTCAT 59.098 45.455 0.00 0.00 0.00 2.90
335 338 2.298446 CTCAGTCTCTTGAAGGTGCTCA 59.702 50.000 0.00 0.00 0.00 4.26
336 339 2.930455 GCTCAGTCTCTTGAAGGTGCTC 60.930 54.545 0.00 0.00 0.00 4.26
337 340 1.001860 GCTCAGTCTCTTGAAGGTGCT 59.998 52.381 0.00 0.00 0.00 4.40
338 341 1.437625 GCTCAGTCTCTTGAAGGTGC 58.562 55.000 0.00 0.00 0.00 5.01
339 342 1.671261 CGGCTCAGTCTCTTGAAGGTG 60.671 57.143 0.00 0.00 0.00 4.00
340 343 0.605589 CGGCTCAGTCTCTTGAAGGT 59.394 55.000 0.00 0.00 0.00 3.50
341 344 0.108424 CCGGCTCAGTCTCTTGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
342 345 0.739112 GCCGGCTCAGTCTCTTGAAG 60.739 60.000 22.15 0.00 0.00 3.02
343 346 1.293498 GCCGGCTCAGTCTCTTGAA 59.707 57.895 22.15 0.00 0.00 2.69
344 347 1.260538 ATGCCGGCTCAGTCTCTTGA 61.261 55.000 29.70 1.81 0.00 3.02
345 348 0.461548 TATGCCGGCTCAGTCTCTTG 59.538 55.000 29.70 0.00 0.00 3.02
346 349 0.749649 CTATGCCGGCTCAGTCTCTT 59.250 55.000 29.70 3.51 0.00 2.85
347 350 1.743321 GCTATGCCGGCTCAGTCTCT 61.743 60.000 29.70 4.41 0.00 3.10
348 351 1.300542 GCTATGCCGGCTCAGTCTC 60.301 63.158 29.70 7.98 0.00 3.36
349 352 1.406065 ATGCTATGCCGGCTCAGTCT 61.406 55.000 29.70 12.32 0.00 3.24
350 353 0.948141 GATGCTATGCCGGCTCAGTC 60.948 60.000 29.70 18.52 0.00 3.51
351 354 1.070445 GATGCTATGCCGGCTCAGT 59.930 57.895 29.70 13.44 0.00 3.41
352 355 0.250209 AAGATGCTATGCCGGCTCAG 60.250 55.000 29.70 23.95 0.00 3.35
353 356 0.533531 CAAGATGCTATGCCGGCTCA 60.534 55.000 29.70 19.51 0.00 4.26
354 357 0.250038 TCAAGATGCTATGCCGGCTC 60.250 55.000 29.70 15.82 0.00 4.70
355 358 0.181114 TTCAAGATGCTATGCCGGCT 59.819 50.000 29.70 15.76 0.00 5.52
356 359 1.024271 TTTCAAGATGCTATGCCGGC 58.976 50.000 22.73 22.73 0.00 6.13
357 360 2.620115 ACATTTCAAGATGCTATGCCGG 59.380 45.455 0.00 0.00 0.00 6.13
358 361 3.976793 ACATTTCAAGATGCTATGCCG 57.023 42.857 0.00 0.00 0.00 5.69
359 362 5.007626 TCGTAACATTTCAAGATGCTATGCC 59.992 40.000 0.00 0.00 0.00 4.40
360 363 6.048073 TCGTAACATTTCAAGATGCTATGC 57.952 37.500 0.00 0.00 0.00 3.14
361 364 7.688372 ACTTCGTAACATTTCAAGATGCTATG 58.312 34.615 0.00 0.00 0.00 2.23
362 365 7.549134 TGACTTCGTAACATTTCAAGATGCTAT 59.451 33.333 0.00 0.00 0.00 2.97
363 366 6.871492 TGACTTCGTAACATTTCAAGATGCTA 59.129 34.615 0.00 0.00 0.00 3.49
364 367 5.700832 TGACTTCGTAACATTTCAAGATGCT 59.299 36.000 0.00 0.00 0.00 3.79
365 368 5.790495 GTGACTTCGTAACATTTCAAGATGC 59.210 40.000 0.00 0.00 0.00 3.91
366 369 6.073276 TGGTGACTTCGTAACATTTCAAGATG 60.073 38.462 0.00 0.00 0.00 2.90
367 370 5.995282 TGGTGACTTCGTAACATTTCAAGAT 59.005 36.000 0.00 0.00 0.00 2.40
368 371 5.361427 TGGTGACTTCGTAACATTTCAAGA 58.639 37.500 0.00 0.00 0.00 3.02
369 372 5.666969 TGGTGACTTCGTAACATTTCAAG 57.333 39.130 0.00 0.00 0.00 3.02
370 373 7.117236 GTCTATGGTGACTTCGTAACATTTCAA 59.883 37.037 0.00 0.00 34.39 2.69
371 374 6.588756 GTCTATGGTGACTTCGTAACATTTCA 59.411 38.462 0.00 0.00 34.39 2.69
372 375 6.237490 CGTCTATGGTGACTTCGTAACATTTC 60.237 42.308 0.00 0.00 35.00 2.17
373 376 5.575606 CGTCTATGGTGACTTCGTAACATTT 59.424 40.000 0.00 0.00 35.00 2.32
374 377 5.100259 CGTCTATGGTGACTTCGTAACATT 58.900 41.667 0.00 0.00 35.00 2.71
375 378 4.669318 CGTCTATGGTGACTTCGTAACAT 58.331 43.478 0.00 0.00 35.00 2.71
376 379 3.671433 GCGTCTATGGTGACTTCGTAACA 60.671 47.826 0.00 0.00 35.00 2.41
377 380 2.850647 GCGTCTATGGTGACTTCGTAAC 59.149 50.000 0.00 0.00 35.00 2.50
378 381 2.159338 GGCGTCTATGGTGACTTCGTAA 60.159 50.000 0.00 0.00 35.00 3.18
379 382 1.402968 GGCGTCTATGGTGACTTCGTA 59.597 52.381 0.00 0.00 35.00 3.43
380 383 0.172803 GGCGTCTATGGTGACTTCGT 59.827 55.000 0.00 0.00 35.00 3.85
381 384 0.456221 AGGCGTCTATGGTGACTTCG 59.544 55.000 0.00 0.00 35.00 3.79
382 385 1.534175 CGAGGCGTCTATGGTGACTTC 60.534 57.143 4.69 0.00 35.00 3.01
383 386 0.456221 CGAGGCGTCTATGGTGACTT 59.544 55.000 4.69 0.00 35.00 3.01
384 387 2.005960 GCGAGGCGTCTATGGTGACT 62.006 60.000 4.69 0.00 35.00 3.41
385 388 1.589196 GCGAGGCGTCTATGGTGAC 60.589 63.158 4.69 0.00 0.00 3.67
386 389 2.004808 CTGCGAGGCGTCTATGGTGA 62.005 60.000 4.69 0.00 0.00 4.02
387 390 1.589993 CTGCGAGGCGTCTATGGTG 60.590 63.158 4.69 0.00 0.00 4.17
388 391 2.005960 GACTGCGAGGCGTCTATGGT 62.006 60.000 4.69 0.00 32.57 3.55
389 392 1.299468 GACTGCGAGGCGTCTATGG 60.299 63.158 4.69 0.00 32.57 2.74
390 393 1.655654 CGACTGCGAGGCGTCTATG 60.656 63.158 4.69 0.00 42.99 2.23
391 394 2.716244 CGACTGCGAGGCGTCTAT 59.284 61.111 4.69 0.00 42.99 1.98
401 404 2.126071 ACGTTCCCATCGACTGCG 60.126 61.111 0.00 0.00 39.35 5.18
402 405 0.802607 GAGACGTTCCCATCGACTGC 60.803 60.000 0.00 0.00 34.20 4.40
403 406 0.811915 AGAGACGTTCCCATCGACTG 59.188 55.000 0.00 0.00 34.20 3.51
404 407 1.473278 GAAGAGACGTTCCCATCGACT 59.527 52.381 0.00 0.00 36.27 4.18
405 408 1.469423 GGAAGAGACGTTCCCATCGAC 60.469 57.143 0.00 0.00 40.31 4.20
406 409 0.815734 GGAAGAGACGTTCCCATCGA 59.184 55.000 0.00 0.00 40.31 3.59
407 410 3.347411 GGAAGAGACGTTCCCATCG 57.653 57.895 0.00 0.00 40.31 3.84
412 415 0.966920 TCTGTGGGAAGAGACGTTCC 59.033 55.000 0.00 0.00 44.81 3.62
413 416 2.814280 TTCTGTGGGAAGAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
414 417 4.884668 TTATTCTGTGGGAAGAGACGTT 57.115 40.909 0.00 0.00 37.36 3.99
415 418 4.039973 TGTTTATTCTGTGGGAAGAGACGT 59.960 41.667 0.00 0.00 34.36 4.34
416 419 4.566004 TGTTTATTCTGTGGGAAGAGACG 58.434 43.478 0.00 0.00 34.36 4.18
417 420 5.292101 CGATGTTTATTCTGTGGGAAGAGAC 59.708 44.000 0.00 0.00 37.36 3.36
418 421 5.046591 ACGATGTTTATTCTGTGGGAAGAGA 60.047 40.000 0.00 0.00 37.36 3.10
419 422 5.178797 ACGATGTTTATTCTGTGGGAAGAG 58.821 41.667 0.00 0.00 37.36 2.85
420 423 5.160607 ACGATGTTTATTCTGTGGGAAGA 57.839 39.130 0.00 0.00 37.36 2.87
421 424 4.032900 CGACGATGTTTATTCTGTGGGAAG 59.967 45.833 0.00 0.00 37.36 3.46
422 425 3.930229 CGACGATGTTTATTCTGTGGGAA 59.070 43.478 0.00 0.00 38.41 3.97
423 426 3.517602 CGACGATGTTTATTCTGTGGGA 58.482 45.455 0.00 0.00 0.00 4.37
424 427 2.607635 CCGACGATGTTTATTCTGTGGG 59.392 50.000 0.00 0.00 0.00 4.61
425 428 3.517602 TCCGACGATGTTTATTCTGTGG 58.482 45.455 0.00 0.00 0.00 4.17
426 429 4.492570 GCTTCCGACGATGTTTATTCTGTG 60.493 45.833 0.00 0.00 0.00 3.66
427 430 3.617263 GCTTCCGACGATGTTTATTCTGT 59.383 43.478 0.00 0.00 0.00 3.41
428 431 3.001330 GGCTTCCGACGATGTTTATTCTG 59.999 47.826 0.00 0.00 0.00 3.02
429 432 3.118738 AGGCTTCCGACGATGTTTATTCT 60.119 43.478 0.00 0.00 0.00 2.40
430 433 3.001330 CAGGCTTCCGACGATGTTTATTC 59.999 47.826 0.00 0.00 0.00 1.75
431 434 2.936498 CAGGCTTCCGACGATGTTTATT 59.064 45.455 0.00 0.00 0.00 1.40
432 435 2.167693 TCAGGCTTCCGACGATGTTTAT 59.832 45.455 0.00 0.00 0.00 1.40
433 436 1.546923 TCAGGCTTCCGACGATGTTTA 59.453 47.619 0.00 0.00 0.00 2.01
434 437 0.320374 TCAGGCTTCCGACGATGTTT 59.680 50.000 0.00 0.00 0.00 2.83
435 438 0.320374 TTCAGGCTTCCGACGATGTT 59.680 50.000 0.00 0.00 0.00 2.71
436 439 0.320374 TTTCAGGCTTCCGACGATGT 59.680 50.000 0.00 0.00 0.00 3.06
437 440 0.721718 GTTTCAGGCTTCCGACGATG 59.278 55.000 0.00 0.00 0.00 3.84
438 441 0.320374 TGTTTCAGGCTTCCGACGAT 59.680 50.000 0.00 0.00 0.00 3.73
439 442 0.105224 TTGTTTCAGGCTTCCGACGA 59.895 50.000 0.00 0.00 0.00 4.20
440 443 0.941542 TTTGTTTCAGGCTTCCGACG 59.058 50.000 0.00 0.00 0.00 5.12
441 444 2.095212 GGATTTGTTTCAGGCTTCCGAC 60.095 50.000 0.00 0.00 0.00 4.79
442 445 2.159382 GGATTTGTTTCAGGCTTCCGA 58.841 47.619 0.00 0.00 0.00 4.55
443 446 1.885887 TGGATTTGTTTCAGGCTTCCG 59.114 47.619 0.00 0.00 0.00 4.30
444 447 2.232208 CCTGGATTTGTTTCAGGCTTCC 59.768 50.000 0.00 0.00 41.12 3.46
445 448 3.157087 TCCTGGATTTGTTTCAGGCTTC 58.843 45.455 0.00 0.00 45.58 3.86
446 449 3.243359 TCCTGGATTTGTTTCAGGCTT 57.757 42.857 0.00 0.00 45.58 4.35
447 450 2.978156 TCCTGGATTTGTTTCAGGCT 57.022 45.000 0.00 0.00 45.58 4.58
448 451 5.659440 TTATTCCTGGATTTGTTTCAGGC 57.341 39.130 0.00 0.00 45.58 4.85
449 452 6.044682 GCATTATTCCTGGATTTGTTTCAGG 58.955 40.000 0.00 0.00 46.91 3.86
450 453 5.745294 CGCATTATTCCTGGATTTGTTTCAG 59.255 40.000 0.00 0.00 0.00 3.02
451 454 5.417266 TCGCATTATTCCTGGATTTGTTTCA 59.583 36.000 0.00 0.00 0.00 2.69
452 455 5.890334 TCGCATTATTCCTGGATTTGTTTC 58.110 37.500 0.00 0.00 0.00 2.78
453 456 5.418840 ACTCGCATTATTCCTGGATTTGTTT 59.581 36.000 0.00 0.00 0.00 2.83
454 457 4.949856 ACTCGCATTATTCCTGGATTTGTT 59.050 37.500 0.00 0.00 0.00 2.83
455 458 4.336433 CACTCGCATTATTCCTGGATTTGT 59.664 41.667 0.00 0.00 0.00 2.83
456 459 4.576053 TCACTCGCATTATTCCTGGATTTG 59.424 41.667 0.00 0.00 0.00 2.32
457 460 4.780815 TCACTCGCATTATTCCTGGATTT 58.219 39.130 0.00 0.00 0.00 2.17
458 461 4.422073 TCACTCGCATTATTCCTGGATT 57.578 40.909 0.00 0.00 0.00 3.01
459 462 4.422073 TTCACTCGCATTATTCCTGGAT 57.578 40.909 0.00 0.00 0.00 3.41
460 463 3.904800 TTCACTCGCATTATTCCTGGA 57.095 42.857 0.00 0.00 0.00 3.86
461 464 4.963276 TTTTCACTCGCATTATTCCTGG 57.037 40.909 0.00 0.00 0.00 4.45
462 465 5.883661 ACATTTTCACTCGCATTATTCCTG 58.116 37.500 0.00 0.00 0.00 3.86
463 466 6.597672 TGTACATTTTCACTCGCATTATTCCT 59.402 34.615 0.00 0.00 0.00 3.36
464 467 6.781138 TGTACATTTTCACTCGCATTATTCC 58.219 36.000 0.00 0.00 0.00 3.01
465 468 7.910162 ACATGTACATTTTCACTCGCATTATTC 59.090 33.333 5.37 0.00 0.00 1.75
466 469 7.761409 ACATGTACATTTTCACTCGCATTATT 58.239 30.769 5.37 0.00 0.00 1.40
467 470 7.320443 ACATGTACATTTTCACTCGCATTAT 57.680 32.000 5.37 0.00 0.00 1.28
468 471 6.735678 ACATGTACATTTTCACTCGCATTA 57.264 33.333 5.37 0.00 0.00 1.90
469 472 5.627499 ACATGTACATTTTCACTCGCATT 57.373 34.783 5.37 0.00 0.00 3.56
470 473 6.925610 ATACATGTACATTTTCACTCGCAT 57.074 33.333 7.96 0.00 0.00 4.73
471 474 8.432110 AATATACATGTACATTTTCACTCGCA 57.568 30.769 7.96 0.00 0.00 5.10
472 475 9.716507 AAAATATACATGTACATTTTCACTCGC 57.283 29.630 23.07 0.00 29.14 5.03
489 492 9.557338 CGTTACAAAAATCGGGAAAAATATACA 57.443 29.630 0.00 0.00 0.00 2.29
490 493 9.558648 ACGTTACAAAAATCGGGAAAAATATAC 57.441 29.630 0.00 0.00 0.00 1.47
494 529 8.868635 TTAACGTTACAAAAATCGGGAAAAAT 57.131 26.923 7.70 0.00 0.00 1.82
499 534 6.369059 TGTTTAACGTTACAAAAATCGGGA 57.631 33.333 7.70 0.00 0.00 5.14
529 564 7.172019 CCCTGCAGATGGAAAAATAAAATATGC 59.828 37.037 17.39 0.00 36.32 3.14
530 565 8.423349 TCCCTGCAGATGGAAAAATAAAATATG 58.577 33.333 17.39 0.00 0.00 1.78
531 566 8.551682 TCCCTGCAGATGGAAAAATAAAATAT 57.448 30.769 17.39 0.00 0.00 1.28
574 609 1.068474 GTACGACAAAGCGAGCATGT 58.932 50.000 6.30 6.30 34.83 3.21
604 639 6.353404 TGTGTTGATGTACACTTATCTCCA 57.647 37.500 0.00 0.00 46.67 3.86
940 1014 4.286320 GCCGCTCGATGGACCGAT 62.286 66.667 7.96 0.00 37.96 4.18
990 1070 1.755783 CCCCCTCATCTTTGCTGCC 60.756 63.158 0.00 0.00 0.00 4.85
991 1071 3.930504 CCCCCTCATCTTTGCTGC 58.069 61.111 0.00 0.00 0.00 5.25
1083 1164 0.101399 CGCGCTTGATGTAGAGGAGT 59.899 55.000 5.56 0.00 0.00 3.85
1086 1167 0.101399 AGTCGCGCTTGATGTAGAGG 59.899 55.000 5.56 0.00 0.00 3.69
1141 1222 3.827898 GAGGGAGGTGGCGACGAG 61.828 72.222 0.00 0.00 0.00 4.18
1260 1341 1.620739 GGGACCAGAGCATGAGCAGA 61.621 60.000 0.00 0.00 45.49 4.26
1353 1434 2.017782 GCGGTCTCAGAGATGTAGACA 58.982 52.381 2.64 0.00 41.15 3.41
1419 1500 3.912745 AAACATGCCGGTCGACCCC 62.913 63.158 28.52 19.49 0.00 4.95
1441 1522 0.391130 GCGAACACCATGCAGTAGGA 60.391 55.000 9.37 0.00 0.00 2.94
1587 1668 4.241555 CGGGCCTCCTTCATCCGG 62.242 72.222 0.84 0.00 37.35 5.14
1588 1669 4.241555 CCGGGCCTCCTTCATCCG 62.242 72.222 0.84 0.00 40.32 4.18
1686 1767 1.142748 CTCCTCGATGGCAGTGTCC 59.857 63.158 0.00 0.00 35.26 4.02
1692 1773 0.668535 CGATGTACTCCTCGATGGCA 59.331 55.000 7.10 0.00 37.05 4.92
1731 1812 0.926155 CAGCTTGATCACCATCGTCG 59.074 55.000 0.00 0.00 0.00 5.12
1821 1905 3.210528 GAGAGCATGCTGCCCTGC 61.211 66.667 28.27 9.57 46.52 4.85
1892 1976 0.390860 GTCGAGCATGCTACCCATCT 59.609 55.000 22.74 0.00 29.71 2.90
1899 1983 0.744874 GTAGGTGGTCGAGCATGCTA 59.255 55.000 22.74 2.30 0.00 3.49
1908 1992 2.356780 GGGGTCCTGTAGGTGGTCG 61.357 68.421 0.00 0.00 36.34 4.79
1917 2001 3.066814 GCGACTACGGGGTCCTGT 61.067 66.667 6.71 6.71 40.15 4.00
1950 2034 2.434185 GCGGGCTTCATGTCGTGA 60.434 61.111 0.00 0.00 34.25 4.35
2028 2115 1.528824 CTCGTCCCAATCCATGCCT 59.471 57.895 0.00 0.00 0.00 4.75
2037 2124 2.654877 GCGTTCTCCTCGTCCCAA 59.345 61.111 0.00 0.00 0.00 4.12
2073 2160 1.292223 GCCGGCAGTAGTCTTGTCA 59.708 57.895 24.80 0.00 0.00 3.58
2149 2236 2.435586 GGTCATGCTGCTCTGCGT 60.436 61.111 0.00 0.00 35.36 5.24
2193 2286 4.457496 ATGGTGCTCGTCGCCTGG 62.457 66.667 10.38 0.00 45.61 4.45
2194 2287 3.190849 CATGGTGCTCGTCGCCTG 61.191 66.667 10.38 4.34 45.61 4.85
2195 2288 4.457496 CCATGGTGCTCGTCGCCT 62.457 66.667 2.57 0.00 45.61 5.52
2385 2478 3.555324 TCCGGCTGCAGGTTGTCA 61.555 61.111 17.12 0.00 0.00 3.58
2450 2543 3.119096 GTTTCTCTGCCGCCGGAC 61.119 66.667 7.68 0.00 0.00 4.79
2509 2602 4.840005 TGTCACGCCGCACACCAA 62.840 61.111 0.00 0.00 0.00 3.67
2538 2631 0.396435 TGATGCCGGAGAACTGTTGT 59.604 50.000 5.05 0.00 0.00 3.32
2643 2736 2.811514 GGAGATGAGGATGGCGGCA 61.812 63.158 16.34 16.34 0.00 5.69
2775 2868 3.626924 GCCGTCACCAGGGACACT 61.627 66.667 0.27 0.00 37.66 3.55
3463 6085 6.483640 CGAGGAGAAGAAGAAAGGAAGAAAAA 59.516 38.462 0.00 0.00 0.00 1.94
3464 6086 5.992217 CGAGGAGAAGAAGAAAGGAAGAAAA 59.008 40.000 0.00 0.00 0.00 2.29
3538 6165 7.418840 TGAAAACTTTAAAAATCATGCGCAT 57.581 28.000 19.28 19.28 0.00 4.73
3599 6254 4.091509 CCCAACGAACATAGAAGAAAGACG 59.908 45.833 0.00 0.00 0.00 4.18
3620 6275 1.683385 GTTGCTTGCAATATCCTCCCC 59.317 52.381 11.32 0.00 0.00 4.81
3624 6279 9.754382 CATTTAATAAGTTGCTTGCAATATCCT 57.246 29.630 11.32 1.21 0.00 3.24
3665 6509 4.957759 ACTATAAACAACAACGGATGCC 57.042 40.909 0.00 0.00 0.00 4.40
3703 6547 6.480320 CAGTTGTGAACTAGTAGAAAAGCTGT 59.520 38.462 3.59 0.00 40.46 4.40
3704 6548 6.701841 TCAGTTGTGAACTAGTAGAAAAGCTG 59.298 38.462 3.59 0.00 40.46 4.24
3711 6555 9.095065 GTTTTCTTTCAGTTGTGAACTAGTAGA 57.905 33.333 3.59 0.00 42.60 2.59
3759 6605 5.981088 AAATCAGCACCAACATATGTGAA 57.019 34.783 9.63 0.00 34.37 3.18
4016 7084 2.740447 GTTACCAAATCCTGTCCGTGAC 59.260 50.000 0.00 0.00 0.00 3.67
4102 7170 7.650834 TTGATTGCAAATTTTTGTAGGTAGC 57.349 32.000 1.71 0.00 40.24 3.58
4103 7171 8.711457 CCTTTGATTGCAAATTTTTGTAGGTAG 58.289 33.333 1.71 0.00 42.66 3.18
4104 7172 8.424918 TCCTTTGATTGCAAATTTTTGTAGGTA 58.575 29.630 1.71 0.00 42.66 3.08
4105 7173 7.278875 TCCTTTGATTGCAAATTTTTGTAGGT 58.721 30.769 1.71 0.00 42.66 3.08
4106 7174 7.727331 TCCTTTGATTGCAAATTTTTGTAGG 57.273 32.000 1.71 3.09 42.66 3.18
4108 7176 9.770097 TGTATCCTTTGATTGCAAATTTTTGTA 57.230 25.926 1.71 0.00 42.66 2.41
4109 7177 8.674263 TGTATCCTTTGATTGCAAATTTTTGT 57.326 26.923 1.71 0.00 42.66 2.83
4116 7184 9.585099 GTGATTTATGTATCCTTTGATTGCAAA 57.415 29.630 1.71 0.00 41.47 3.68
4117 7185 8.747471 TGTGATTTATGTATCCTTTGATTGCAA 58.253 29.630 0.00 0.00 32.18 4.08
4118 7186 8.291191 TGTGATTTATGTATCCTTTGATTGCA 57.709 30.769 0.00 0.00 32.18 4.08
4119 7187 8.623903 TCTGTGATTTATGTATCCTTTGATTGC 58.376 33.333 0.00 0.00 32.18 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.