Multiple sequence alignment - TraesCS6D01G403800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G403800 chr6D 100.000 5944 0 0 1 5944 471916775 471922718 0.000000e+00 10977.0
1 TraesCS6D01G403800 chr6B 89.065 4929 298 104 447 5224 716617583 716622421 0.000000e+00 5893.0
2 TraesCS6D01G403800 chr6B 91.528 720 55 5 5229 5944 716622564 716623281 0.000000e+00 987.0
3 TraesCS6D01G403800 chrUn 88.903 3938 235 83 439 4261 74822085 74818235 0.000000e+00 4665.0
4 TraesCS6D01G403800 chrUn 88.498 939 62 14 4300 5208 74818163 74817241 0.000000e+00 1094.0
5 TraesCS6D01G403800 chrUn 93.065 721 43 5 5229 5943 74817050 74816331 0.000000e+00 1048.0
6 TraesCS6D01G403800 chr4A 91.776 1897 134 16 2085 3966 741545994 741547883 0.000000e+00 2619.0
7 TraesCS6D01G403800 chr4A 90.901 1121 71 15 3958 5068 741548613 741549712 0.000000e+00 1476.0
8 TraesCS6D01G403800 chr4A 93.451 565 34 3 5383 5944 741565076 741565640 0.000000e+00 835.0
9 TraesCS6D01G403800 chr4A 91.192 193 14 3 5193 5384 741549754 741549944 5.910000e-65 259.0
10 TraesCS6D01G403800 chr7D 74.929 2469 474 105 2091 4494 635586233 635588621 0.000000e+00 996.0
11 TraesCS6D01G403800 chr2D 74.726 1915 380 75 2094 3960 518266517 518268375 0.000000e+00 760.0
12 TraesCS6D01G403800 chr2D 79.055 487 91 8 4009 4493 518268495 518268972 2.070000e-84 324.0
13 TraesCS6D01G403800 chr2D 85.366 123 14 4 113 232 206681111 206681232 2.250000e-24 124.0
14 TraesCS6D01G403800 chr2D 82.927 123 13 7 113 232 544673135 544673018 2.930000e-18 104.0
15 TraesCS6D01G403800 chr1D 82.798 872 90 33 3089 3945 482925465 482924639 0.000000e+00 725.0
16 TraesCS6D01G403800 chr1D 87.912 273 29 3 2143 2415 482927316 482927048 9.610000e-83 318.0
17 TraesCS6D01G403800 chr1D 93.333 165 10 1 2728 2891 490938505 490938341 5.950000e-60 243.0
18 TraesCS6D01G403800 chr1D 85.780 218 20 1 1295 1512 490939462 490939256 2.790000e-53 220.0
19 TraesCS6D01G403800 chr1D 80.405 296 34 9 2761 3050 482926645 482926368 2.810000e-48 204.0
20 TraesCS6D01G403800 chr1D 81.333 225 27 2 2413 2637 490938717 490938508 1.020000e-37 169.0
21 TraesCS6D01G403800 chr1D 80.556 216 15 19 1053 1259 482927709 482927512 2.230000e-29 141.0
22 TraesCS6D01G403800 chr1D 90.698 43 3 1 1314 1355 482927497 482927455 8.320000e-04 56.5
23 TraesCS6D01G403800 chr1A 79.780 1093 136 39 2856 3914 579216374 579217415 0.000000e+00 715.0
24 TraesCS6D01G403800 chr1A 82.555 407 43 14 1357 1747 588912708 588912314 3.430000e-87 333.0
25 TraesCS6D01G403800 chr1A 87.255 204 5 11 979 1166 588913041 588912843 4.670000e-51 213.0
26 TraesCS6D01G403800 chr1A 92.857 70 5 0 1805 1874 588912291 588912222 1.050000e-17 102.0
27 TraesCS6D01G403800 chr2B 74.423 1908 372 78 2094 3945 610417030 610418877 0.000000e+00 713.0
28 TraesCS6D01G403800 chr2B 80.533 488 82 8 4009 4493 610419010 610419487 4.380000e-96 363.0
29 TraesCS6D01G403800 chr2B 85.246 122 15 3 113 232 260758212 260758092 8.090000e-24 122.0
30 TraesCS6D01G403800 chr2B 92.647 68 5 0 1046 1113 610415996 610416063 1.360000e-16 99.0
31 TraesCS6D01G403800 chr2B 80.620 129 12 9 113 231 660464276 660464151 2.950000e-13 87.9
32 TraesCS6D01G403800 chr7B 75.697 1399 261 53 2588 3945 740035199 740033839 1.410000e-175 627.0
33 TraesCS6D01G403800 chr7B 83.772 228 37 0 2091 2318 740035670 740035443 3.610000e-52 217.0
34 TraesCS6D01G403800 chr7B 85.135 74 11 0 1046 1119 740036851 740036778 6.390000e-10 76.8
35 TraesCS6D01G403800 chr2A 80.527 493 82 12 4009 4494 662341717 662342202 3.380000e-97 366.0
36 TraesCS6D01G403800 chr2A 89.286 56 6 0 198 253 617638867 617638922 2.970000e-08 71.3
37 TraesCS6D01G403800 chr7A 78.008 482 87 18 4024 4492 730298664 730298189 9.750000e-73 285.0
38 TraesCS6D01G403800 chr7A 77.830 424 73 14 2093 2513 730428564 730428159 5.950000e-60 243.0
39 TraesCS6D01G403800 chr7A 74.324 444 86 20 3300 3739 730290164 730289745 4.770000e-36 163.0
40 TraesCS6D01G403800 chr7A 82.114 123 15 6 113 232 422830962 422830844 1.360000e-16 99.0
41 TraesCS6D01G403800 chr1B 81.944 216 18 4 1654 1865 683414401 683414203 4.770000e-36 163.0
42 TraesCS6D01G403800 chr1B 87.591 137 5 5 979 1103 683414729 683414593 1.330000e-31 148.0
43 TraesCS6D01G403800 chr6A 82.759 116 18 2 119 232 243958422 243958307 1.050000e-17 102.0
44 TraesCS6D01G403800 chr6A 81.915 94 14 3 117 207 17377920 17378013 6.390000e-10 76.8
45 TraesCS6D01G403800 chr3B 81.356 118 19 3 117 232 506196119 506196003 6.340000e-15 93.5
46 TraesCS6D01G403800 chr5A 78.065 155 24 8 107 252 649599559 649599712 8.200000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G403800 chr6D 471916775 471922718 5943 False 10977.000000 10977 100.000000 1 5944 1 chr6D.!!$F1 5943
1 TraesCS6D01G403800 chr6B 716617583 716623281 5698 False 3440.000000 5893 90.296500 447 5944 2 chr6B.!!$F1 5497
2 TraesCS6D01G403800 chrUn 74816331 74822085 5754 True 2269.000000 4665 90.155333 439 5943 3 chrUn.!!$R1 5504
3 TraesCS6D01G403800 chr4A 741545994 741549944 3950 False 1451.333333 2619 91.289667 2085 5384 3 chr4A.!!$F2 3299
4 TraesCS6D01G403800 chr4A 741565076 741565640 564 False 835.000000 835 93.451000 5383 5944 1 chr4A.!!$F1 561
5 TraesCS6D01G403800 chr7D 635586233 635588621 2388 False 996.000000 996 74.929000 2091 4494 1 chr7D.!!$F1 2403
6 TraesCS6D01G403800 chr2D 518266517 518268972 2455 False 542.000000 760 76.890500 2094 4493 2 chr2D.!!$F2 2399
7 TraesCS6D01G403800 chr1D 482924639 482927709 3070 True 288.900000 725 84.473800 1053 3945 5 chr1D.!!$R1 2892
8 TraesCS6D01G403800 chr1D 490938341 490939462 1121 True 210.666667 243 86.815333 1295 2891 3 chr1D.!!$R2 1596
9 TraesCS6D01G403800 chr1A 579216374 579217415 1041 False 715.000000 715 79.780000 2856 3914 1 chr1A.!!$F1 1058
10 TraesCS6D01G403800 chr1A 588912222 588913041 819 True 216.000000 333 87.555667 979 1874 3 chr1A.!!$R1 895
11 TraesCS6D01G403800 chr2B 610415996 610419487 3491 False 391.666667 713 82.534333 1046 4493 3 chr2B.!!$F1 3447
12 TraesCS6D01G403800 chr7B 740033839 740036851 3012 True 306.933333 627 81.534667 1046 3945 3 chr7B.!!$R1 2899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.107312 TTTTCAACCCCGTCCGTTCA 60.107 50.000 0.00 0.0 0.00 3.18 F
128 129 0.179012 AACCCCGTCCGTTCACAAAT 60.179 50.000 0.00 0.0 0.00 2.32 F
1865 2291 0.251832 TCGGCCTCTCCTCACTTTCT 60.252 55.000 0.00 0.0 0.00 2.52 F
3320 4763 0.032540 GCAGCAAAGACAAACCTGGG 59.967 55.000 0.00 0.0 0.00 4.45 F
3944 5477 2.295602 GGGGGCCTTCGTTCAGGTA 61.296 63.158 0.84 0.0 36.15 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2503 0.249573 GCAACAGCCAGCAAACACAT 60.250 50.0 0.00 0.0 0.00 3.21 R
2078 2505 0.872881 CTGCAACAGCCAGCAAACAC 60.873 55.0 0.00 0.0 40.73 3.32 R
3721 5245 0.035915 GACAAGGTCCCTGAGCTTCC 60.036 60.0 5.62 0.0 45.53 3.46 R
4590 6975 0.247185 CGGGTTGTTCGCCTACCTTA 59.753 55.0 5.76 0.0 32.46 2.69 R
5398 7992 0.462047 AATGCTCCTTAAGTCGGCGG 60.462 55.0 7.21 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.612066 ACATGTGTTTTTCATTTTATTTCAGGT 57.388 25.926 0.00 0.00 0.00 4.00
35 36 9.562583 TTTCATTTTATTTCAGGTATAACACGC 57.437 29.630 0.00 0.00 0.00 5.34
36 37 8.270080 TCATTTTATTTCAGGTATAACACGCA 57.730 30.769 0.00 0.00 0.00 5.24
37 38 8.394877 TCATTTTATTTCAGGTATAACACGCAG 58.605 33.333 0.00 0.00 0.00 5.18
39 40 6.897259 TTATTTCAGGTATAACACGCAGTC 57.103 37.500 0.00 0.00 41.61 3.51
40 41 3.945981 TTCAGGTATAACACGCAGTCA 57.054 42.857 0.00 0.00 41.61 3.41
41 42 4.465632 TTCAGGTATAACACGCAGTCAT 57.534 40.909 0.00 0.00 41.61 3.06
42 43 5.585820 TTCAGGTATAACACGCAGTCATA 57.414 39.130 0.00 0.00 41.61 2.15
43 44 5.784578 TCAGGTATAACACGCAGTCATAT 57.215 39.130 0.00 0.00 41.61 1.78
44 45 5.769367 TCAGGTATAACACGCAGTCATATC 58.231 41.667 0.00 0.00 41.61 1.63
45 46 5.535030 TCAGGTATAACACGCAGTCATATCT 59.465 40.000 0.00 0.00 41.61 1.98
46 47 5.631096 CAGGTATAACACGCAGTCATATCTG 59.369 44.000 0.00 0.00 41.61 2.90
47 48 4.923871 GGTATAACACGCAGTCATATCTGG 59.076 45.833 0.00 0.00 41.61 3.86
48 49 4.937201 ATAACACGCAGTCATATCTGGA 57.063 40.909 0.00 0.00 41.61 3.86
49 50 3.610040 AACACGCAGTCATATCTGGAA 57.390 42.857 0.00 0.00 41.61 3.53
50 51 3.610040 ACACGCAGTCATATCTGGAAA 57.390 42.857 0.00 0.00 41.61 3.13
51 52 3.525537 ACACGCAGTCATATCTGGAAAG 58.474 45.455 0.00 0.00 41.61 2.62
52 53 2.286294 CACGCAGTCATATCTGGAAAGC 59.714 50.000 0.00 0.00 41.61 3.51
53 54 1.524355 CGCAGTCATATCTGGAAAGCG 59.476 52.381 0.00 0.00 36.12 4.68
54 55 1.869767 GCAGTCATATCTGGAAAGCGG 59.130 52.381 0.00 0.00 36.12 5.52
55 56 2.743183 GCAGTCATATCTGGAAAGCGGT 60.743 50.000 0.00 0.00 36.12 5.68
56 57 3.126831 CAGTCATATCTGGAAAGCGGTC 58.873 50.000 0.00 0.00 0.00 4.79
57 58 2.766263 AGTCATATCTGGAAAGCGGTCA 59.234 45.455 0.00 0.00 0.00 4.02
58 59 3.197766 AGTCATATCTGGAAAGCGGTCAA 59.802 43.478 0.00 0.00 0.00 3.18
59 60 3.938963 GTCATATCTGGAAAGCGGTCAAA 59.061 43.478 0.00 0.00 0.00 2.69
60 61 4.576463 GTCATATCTGGAAAGCGGTCAAAT 59.424 41.667 0.00 0.00 0.00 2.32
61 62 5.066505 GTCATATCTGGAAAGCGGTCAAATT 59.933 40.000 0.00 0.00 0.00 1.82
62 63 5.652014 TCATATCTGGAAAGCGGTCAAATTT 59.348 36.000 0.00 0.00 0.00 1.82
63 64 3.915437 TCTGGAAAGCGGTCAAATTTC 57.085 42.857 0.00 0.00 33.20 2.17
64 65 3.486383 TCTGGAAAGCGGTCAAATTTCT 58.514 40.909 0.00 0.00 34.19 2.52
65 66 3.253188 TCTGGAAAGCGGTCAAATTTCTG 59.747 43.478 0.00 0.00 34.19 3.02
66 67 3.218453 TGGAAAGCGGTCAAATTTCTGA 58.782 40.909 0.00 0.00 34.19 3.27
67 68 3.634448 TGGAAAGCGGTCAAATTTCTGAA 59.366 39.130 0.00 0.00 34.19 3.02
68 69 4.229876 GGAAAGCGGTCAAATTTCTGAAG 58.770 43.478 0.00 0.00 34.19 3.02
69 70 2.997485 AGCGGTCAAATTTCTGAAGC 57.003 45.000 0.00 0.00 33.74 3.86
70 71 1.197721 AGCGGTCAAATTTCTGAAGCG 59.802 47.619 0.00 0.00 36.74 4.68
71 72 1.196808 GCGGTCAAATTTCTGAAGCGA 59.803 47.619 12.43 0.00 33.02 4.93
72 73 2.726066 GCGGTCAAATTTCTGAAGCGAG 60.726 50.000 12.43 0.00 33.02 5.03
73 74 2.159653 CGGTCAAATTTCTGAAGCGAGG 60.160 50.000 0.00 0.00 33.02 4.63
74 75 2.414691 GGTCAAATTTCTGAAGCGAGGC 60.415 50.000 0.00 0.00 0.00 4.70
75 76 2.485814 GTCAAATTTCTGAAGCGAGGCT 59.514 45.455 0.00 0.00 42.56 4.58
76 77 2.485426 TCAAATTTCTGAAGCGAGGCTG 59.515 45.455 0.00 0.00 39.62 4.85
77 78 2.191128 AATTTCTGAAGCGAGGCTGT 57.809 45.000 0.00 0.00 39.62 4.40
78 79 2.191128 ATTTCTGAAGCGAGGCTGTT 57.809 45.000 0.00 0.00 39.62 3.16
79 80 2.831685 TTTCTGAAGCGAGGCTGTTA 57.168 45.000 0.00 0.00 39.62 2.41
80 81 3.334583 TTTCTGAAGCGAGGCTGTTAT 57.665 42.857 0.00 0.00 39.62 1.89
81 82 4.465632 TTTCTGAAGCGAGGCTGTTATA 57.534 40.909 0.00 0.00 39.62 0.98
82 83 4.465632 TTCTGAAGCGAGGCTGTTATAA 57.534 40.909 0.00 0.00 39.62 0.98
83 84 4.465632 TCTGAAGCGAGGCTGTTATAAA 57.534 40.909 0.00 0.00 39.62 1.40
84 85 5.023533 TCTGAAGCGAGGCTGTTATAAAT 57.976 39.130 0.00 0.00 39.62 1.40
85 86 5.428253 TCTGAAGCGAGGCTGTTATAAATT 58.572 37.500 0.00 0.00 39.62 1.82
86 87 6.578944 TCTGAAGCGAGGCTGTTATAAATTA 58.421 36.000 0.00 0.00 39.62 1.40
87 88 7.217200 TCTGAAGCGAGGCTGTTATAAATTAT 58.783 34.615 0.00 0.00 39.62 1.28
88 89 7.715249 TCTGAAGCGAGGCTGTTATAAATTATT 59.285 33.333 0.00 0.00 39.62 1.40
89 90 7.639039 TGAAGCGAGGCTGTTATAAATTATTG 58.361 34.615 0.00 0.00 39.62 1.90
90 91 7.282224 TGAAGCGAGGCTGTTATAAATTATTGT 59.718 33.333 0.00 0.00 39.62 2.71
91 92 7.568199 AGCGAGGCTGTTATAAATTATTGTT 57.432 32.000 0.00 0.00 37.57 2.83
92 93 7.996385 AGCGAGGCTGTTATAAATTATTGTTT 58.004 30.769 0.00 0.00 37.57 2.83
93 94 8.129211 AGCGAGGCTGTTATAAATTATTGTTTC 58.871 33.333 0.00 0.00 37.57 2.78
94 95 7.378728 GCGAGGCTGTTATAAATTATTGTTTCC 59.621 37.037 0.00 0.00 0.00 3.13
95 96 7.586300 CGAGGCTGTTATAAATTATTGTTTCCG 59.414 37.037 0.00 0.00 0.00 4.30
96 97 7.200455 AGGCTGTTATAAATTATTGTTTCCGC 58.800 34.615 0.00 0.00 0.00 5.54
97 98 7.068226 AGGCTGTTATAAATTATTGTTTCCGCT 59.932 33.333 0.00 0.00 0.00 5.52
98 99 8.347035 GGCTGTTATAAATTATTGTTTCCGCTA 58.653 33.333 0.00 0.00 0.00 4.26
99 100 9.166126 GCTGTTATAAATTATTGTTTCCGCTAC 57.834 33.333 0.00 0.00 0.00 3.58
112 113 7.311364 TGTTTCCGCTACTATATTTTCAACC 57.689 36.000 0.00 0.00 0.00 3.77
113 114 6.316890 TGTTTCCGCTACTATATTTTCAACCC 59.683 38.462 0.00 0.00 0.00 4.11
114 115 4.964593 TCCGCTACTATATTTTCAACCCC 58.035 43.478 0.00 0.00 0.00 4.95
115 116 3.744426 CCGCTACTATATTTTCAACCCCG 59.256 47.826 0.00 0.00 0.00 5.73
116 117 4.374399 CGCTACTATATTTTCAACCCCGT 58.626 43.478 0.00 0.00 0.00 5.28
117 118 4.446719 CGCTACTATATTTTCAACCCCGTC 59.553 45.833 0.00 0.00 0.00 4.79
118 119 4.753610 GCTACTATATTTTCAACCCCGTCC 59.246 45.833 0.00 0.00 0.00 4.79
119 120 3.800531 ACTATATTTTCAACCCCGTCCG 58.199 45.455 0.00 0.00 0.00 4.79
120 121 2.793288 ATATTTTCAACCCCGTCCGT 57.207 45.000 0.00 0.00 0.00 4.69
121 122 2.565046 TATTTTCAACCCCGTCCGTT 57.435 45.000 0.00 0.00 0.00 4.44
122 123 1.241165 ATTTTCAACCCCGTCCGTTC 58.759 50.000 0.00 0.00 0.00 3.95
123 124 0.107312 TTTTCAACCCCGTCCGTTCA 60.107 50.000 0.00 0.00 0.00 3.18
124 125 0.814812 TTTCAACCCCGTCCGTTCAC 60.815 55.000 0.00 0.00 0.00 3.18
125 126 1.969200 TTCAACCCCGTCCGTTCACA 61.969 55.000 0.00 0.00 0.00 3.58
126 127 1.524165 CAACCCCGTCCGTTCACAA 60.524 57.895 0.00 0.00 0.00 3.33
127 128 1.096386 CAACCCCGTCCGTTCACAAA 61.096 55.000 0.00 0.00 0.00 2.83
128 129 0.179012 AACCCCGTCCGTTCACAAAT 60.179 50.000 0.00 0.00 0.00 2.32
129 130 0.686224 ACCCCGTCCGTTCACAAATA 59.314 50.000 0.00 0.00 0.00 1.40
130 131 1.279846 ACCCCGTCCGTTCACAAATAT 59.720 47.619 0.00 0.00 0.00 1.28
131 132 2.500910 ACCCCGTCCGTTCACAAATATA 59.499 45.455 0.00 0.00 0.00 0.86
132 133 3.055240 ACCCCGTCCGTTCACAAATATAA 60.055 43.478 0.00 0.00 0.00 0.98
133 134 3.558418 CCCCGTCCGTTCACAAATATAAG 59.442 47.826 0.00 0.00 0.00 1.73
134 135 4.435425 CCCGTCCGTTCACAAATATAAGA 58.565 43.478 0.00 0.00 0.00 2.10
135 136 5.054477 CCCGTCCGTTCACAAATATAAGAT 58.946 41.667 0.00 0.00 0.00 2.40
136 137 5.050363 CCCGTCCGTTCACAAATATAAGATG 60.050 44.000 0.00 0.00 0.00 2.90
137 138 5.522460 CCGTCCGTTCACAAATATAAGATGT 59.478 40.000 0.00 0.00 0.00 3.06
138 139 6.036735 CCGTCCGTTCACAAATATAAGATGTT 59.963 38.462 0.00 0.00 0.00 2.71
139 140 7.117454 CGTCCGTTCACAAATATAAGATGTTC 58.883 38.462 0.00 0.00 0.00 3.18
140 141 7.010183 CGTCCGTTCACAAATATAAGATGTTCT 59.990 37.037 0.00 0.00 0.00 3.01
141 142 9.309516 GTCCGTTCACAAATATAAGATGTTCTA 57.690 33.333 0.00 0.00 0.00 2.10
142 143 9.878667 TCCGTTCACAAATATAAGATGTTCTAA 57.121 29.630 0.00 0.00 0.00 2.10
263 264 9.877178 ACAATGAGAGTAGTTAATTACTGGAAG 57.123 33.333 14.70 3.73 37.73 3.46
266 267 8.294954 TGAGAGTAGTTAATTACTGGAAGAGG 57.705 38.462 14.70 0.00 37.73 3.69
267 268 7.342284 TGAGAGTAGTTAATTACTGGAAGAGGG 59.658 40.741 14.70 0.00 37.73 4.30
268 269 7.420029 AGAGTAGTTAATTACTGGAAGAGGGA 58.580 38.462 14.70 0.00 37.73 4.20
269 270 7.899709 AGAGTAGTTAATTACTGGAAGAGGGAA 59.100 37.037 14.70 0.00 37.73 3.97
270 271 8.625467 AGTAGTTAATTACTGGAAGAGGGAAT 57.375 34.615 9.64 0.00 37.73 3.01
271 272 9.725206 AGTAGTTAATTACTGGAAGAGGGAATA 57.275 33.333 9.64 0.00 37.73 1.75
278 279 5.921962 ACTGGAAGAGGGAATAAAATTGC 57.078 39.130 0.00 0.00 37.43 3.56
279 280 5.583932 ACTGGAAGAGGGAATAAAATTGCT 58.416 37.500 0.00 0.00 37.43 3.91
280 281 6.019108 ACTGGAAGAGGGAATAAAATTGCTT 58.981 36.000 0.00 0.00 37.43 3.91
281 282 6.071165 ACTGGAAGAGGGAATAAAATTGCTTG 60.071 38.462 0.00 0.00 37.43 4.01
282 283 6.015918 TGGAAGAGGGAATAAAATTGCTTGA 58.984 36.000 0.00 0.00 0.00 3.02
283 284 6.669154 TGGAAGAGGGAATAAAATTGCTTGAT 59.331 34.615 0.00 0.00 0.00 2.57
284 285 7.838696 TGGAAGAGGGAATAAAATTGCTTGATA 59.161 33.333 0.00 0.00 0.00 2.15
285 286 8.695456 GGAAGAGGGAATAAAATTGCTTGATAA 58.305 33.333 0.00 0.00 0.00 1.75
287 288 9.875691 AAGAGGGAATAAAATTGCTTGATAAAC 57.124 29.630 0.00 0.00 0.00 2.01
288 289 9.034800 AGAGGGAATAAAATTGCTTGATAAACA 57.965 29.630 0.00 0.00 0.00 2.83
289 290 9.822185 GAGGGAATAAAATTGCTTGATAAACAT 57.178 29.630 0.00 0.00 0.00 2.71
290 291 9.822185 AGGGAATAAAATTGCTTGATAAACATC 57.178 29.630 0.00 0.00 0.00 3.06
291 292 9.822185 GGGAATAAAATTGCTTGATAAACATCT 57.178 29.630 0.00 0.00 0.00 2.90
309 310 8.433421 AAACATCTTACATTCATACTTACGGG 57.567 34.615 0.00 0.00 0.00 5.28
310 311 7.356089 ACATCTTACATTCATACTTACGGGA 57.644 36.000 0.00 0.00 0.00 5.14
311 312 7.788026 ACATCTTACATTCATACTTACGGGAA 58.212 34.615 0.00 0.00 0.00 3.97
312 313 8.429641 ACATCTTACATTCATACTTACGGGAAT 58.570 33.333 0.00 0.00 0.00 3.01
314 315 8.014070 TCTTACATTCATACTTACGGGAATGA 57.986 34.615 17.21 0.00 45.86 2.57
315 316 8.141909 TCTTACATTCATACTTACGGGAATGAG 58.858 37.037 17.21 7.57 45.86 2.90
316 317 5.611374 ACATTCATACTTACGGGAATGAGG 58.389 41.667 17.21 0.00 45.86 3.86
317 318 4.682778 TTCATACTTACGGGAATGAGGG 57.317 45.455 0.00 0.00 30.53 4.30
318 319 3.918566 TCATACTTACGGGAATGAGGGA 58.081 45.455 0.00 0.00 0.00 4.20
319 320 4.489737 TCATACTTACGGGAATGAGGGAT 58.510 43.478 0.00 0.00 0.00 3.85
320 321 5.647230 TCATACTTACGGGAATGAGGGATA 58.353 41.667 0.00 0.00 0.00 2.59
321 322 6.079336 TCATACTTACGGGAATGAGGGATAA 58.921 40.000 0.00 0.00 0.00 1.75
322 323 4.684484 ACTTACGGGAATGAGGGATAAC 57.316 45.455 0.00 0.00 0.00 1.89
323 324 4.035112 ACTTACGGGAATGAGGGATAACA 58.965 43.478 0.00 0.00 0.00 2.41
324 325 4.658901 ACTTACGGGAATGAGGGATAACAT 59.341 41.667 0.00 0.00 0.00 2.71
325 326 3.492102 ACGGGAATGAGGGATAACATG 57.508 47.619 0.00 0.00 0.00 3.21
326 327 2.154462 CGGGAATGAGGGATAACATGC 58.846 52.381 0.00 0.00 0.00 4.06
327 328 2.154462 GGGAATGAGGGATAACATGCG 58.846 52.381 0.00 0.00 0.00 4.73
328 329 2.487265 GGGAATGAGGGATAACATGCGT 60.487 50.000 0.00 0.00 0.00 5.24
329 330 3.214328 GGAATGAGGGATAACATGCGTT 58.786 45.455 0.00 0.00 39.24 4.84
330 331 3.632145 GGAATGAGGGATAACATGCGTTT 59.368 43.478 0.00 0.00 36.52 3.60
331 332 4.097892 GGAATGAGGGATAACATGCGTTTT 59.902 41.667 0.00 0.00 36.52 2.43
332 333 5.394115 GGAATGAGGGATAACATGCGTTTTT 60.394 40.000 0.00 0.00 36.52 1.94
364 365 8.895932 ACAAACGATGCTAATTAATCTGTTTC 57.104 30.769 12.25 0.00 32.48 2.78
365 366 7.968405 ACAAACGATGCTAATTAATCTGTTTCC 59.032 33.333 12.25 0.00 32.48 3.13
366 367 7.624360 AACGATGCTAATTAATCTGTTTCCA 57.376 32.000 0.00 0.00 0.00 3.53
367 368 7.251704 ACGATGCTAATTAATCTGTTTCCAG 57.748 36.000 0.00 0.00 40.25 3.86
368 369 6.260936 ACGATGCTAATTAATCTGTTTCCAGG 59.739 38.462 0.00 0.00 39.31 4.45
369 370 6.483307 CGATGCTAATTAATCTGTTTCCAGGA 59.517 38.462 0.00 0.00 39.31 3.86
370 371 7.307632 CGATGCTAATTAATCTGTTTCCAGGAG 60.308 40.741 0.00 0.00 39.31 3.69
371 372 6.721318 TGCTAATTAATCTGTTTCCAGGAGT 58.279 36.000 0.00 0.00 39.31 3.85
372 373 7.175104 TGCTAATTAATCTGTTTCCAGGAGTT 58.825 34.615 0.00 0.00 39.31 3.01
373 374 7.669722 TGCTAATTAATCTGTTTCCAGGAGTTT 59.330 33.333 0.00 0.00 39.31 2.66
374 375 7.970614 GCTAATTAATCTGTTTCCAGGAGTTTG 59.029 37.037 0.00 0.00 39.31 2.93
375 376 7.839680 AATTAATCTGTTTCCAGGAGTTTGT 57.160 32.000 0.00 0.00 39.31 2.83
376 377 8.934023 AATTAATCTGTTTCCAGGAGTTTGTA 57.066 30.769 0.00 0.00 39.31 2.41
377 378 7.979444 TTAATCTGTTTCCAGGAGTTTGTAG 57.021 36.000 0.00 0.00 39.31 2.74
378 379 5.825593 ATCTGTTTCCAGGAGTTTGTAGA 57.174 39.130 0.00 0.00 39.31 2.59
379 380 4.957296 TCTGTTTCCAGGAGTTTGTAGAC 58.043 43.478 0.00 0.00 39.31 2.59
380 381 4.407621 TCTGTTTCCAGGAGTTTGTAGACA 59.592 41.667 0.00 0.00 39.31 3.41
381 382 5.071788 TCTGTTTCCAGGAGTTTGTAGACAT 59.928 40.000 0.00 0.00 39.31 3.06
382 383 5.690865 TGTTTCCAGGAGTTTGTAGACATT 58.309 37.500 0.00 0.00 0.00 2.71
383 384 6.126409 TGTTTCCAGGAGTTTGTAGACATTT 58.874 36.000 0.00 0.00 0.00 2.32
384 385 6.605594 TGTTTCCAGGAGTTTGTAGACATTTT 59.394 34.615 0.00 0.00 0.00 1.82
385 386 7.123547 TGTTTCCAGGAGTTTGTAGACATTTTT 59.876 33.333 0.00 0.00 0.00 1.94
386 387 6.633500 TCCAGGAGTTTGTAGACATTTTTG 57.367 37.500 0.00 0.00 0.00 2.44
387 388 6.361433 TCCAGGAGTTTGTAGACATTTTTGA 58.639 36.000 0.00 0.00 0.00 2.69
388 389 6.831353 TCCAGGAGTTTGTAGACATTTTTGAA 59.169 34.615 0.00 0.00 0.00 2.69
389 390 7.013274 TCCAGGAGTTTGTAGACATTTTTGAAG 59.987 37.037 0.00 0.00 0.00 3.02
390 391 7.141363 CAGGAGTTTGTAGACATTTTTGAAGG 58.859 38.462 0.00 0.00 0.00 3.46
391 392 6.833933 AGGAGTTTGTAGACATTTTTGAAGGT 59.166 34.615 0.00 0.00 0.00 3.50
392 393 7.342026 AGGAGTTTGTAGACATTTTTGAAGGTT 59.658 33.333 0.00 0.00 0.00 3.50
393 394 7.979537 GGAGTTTGTAGACATTTTTGAAGGTTT 59.020 33.333 0.00 0.00 0.00 3.27
394 395 9.366216 GAGTTTGTAGACATTTTTGAAGGTTTT 57.634 29.630 0.00 0.00 0.00 2.43
395 396 9.150348 AGTTTGTAGACATTTTTGAAGGTTTTG 57.850 29.630 0.00 0.00 0.00 2.44
396 397 9.145865 GTTTGTAGACATTTTTGAAGGTTTTGA 57.854 29.630 0.00 0.00 0.00 2.69
397 398 9.712305 TTTGTAGACATTTTTGAAGGTTTTGAA 57.288 25.926 0.00 0.00 0.00 2.69
398 399 8.925161 TGTAGACATTTTTGAAGGTTTTGAAG 57.075 30.769 0.00 0.00 0.00 3.02
399 400 7.978975 TGTAGACATTTTTGAAGGTTTTGAAGG 59.021 33.333 0.00 0.00 0.00 3.46
400 401 7.181569 AGACATTTTTGAAGGTTTTGAAGGA 57.818 32.000 0.00 0.00 0.00 3.36
401 402 7.619965 AGACATTTTTGAAGGTTTTGAAGGAA 58.380 30.769 0.00 0.00 0.00 3.36
402 403 8.100164 AGACATTTTTGAAGGTTTTGAAGGAAA 58.900 29.630 0.00 0.00 0.00 3.13
403 404 8.806429 ACATTTTTGAAGGTTTTGAAGGAAAT 57.194 26.923 0.00 0.00 0.00 2.17
404 405 9.898152 ACATTTTTGAAGGTTTTGAAGGAAATA 57.102 25.926 0.00 0.00 0.00 1.40
411 412 9.762933 TGAAGGTTTTGAAGGAAATATTTTCAG 57.237 29.630 9.19 0.00 32.92 3.02
412 413 9.208022 GAAGGTTTTGAAGGAAATATTTTCAGG 57.792 33.333 9.19 0.00 32.92 3.86
413 414 8.491045 AGGTTTTGAAGGAAATATTTTCAGGA 57.509 30.769 9.19 0.00 32.92 3.86
414 415 8.367911 AGGTTTTGAAGGAAATATTTTCAGGAC 58.632 33.333 9.19 7.93 32.92 3.85
415 416 8.367911 GGTTTTGAAGGAAATATTTTCAGGACT 58.632 33.333 9.19 0.00 32.92 3.85
416 417 9.411801 GTTTTGAAGGAAATATTTTCAGGACTC 57.588 33.333 9.19 0.00 32.92 3.36
417 418 8.940397 TTTGAAGGAAATATTTTCAGGACTCT 57.060 30.769 9.19 0.00 32.92 3.24
418 419 8.940397 TTGAAGGAAATATTTTCAGGACTCTT 57.060 30.769 9.19 0.00 32.92 2.85
419 420 8.567285 TGAAGGAAATATTTTCAGGACTCTTC 57.433 34.615 9.19 3.01 0.00 2.87
420 421 8.163408 TGAAGGAAATATTTTCAGGACTCTTCA 58.837 33.333 9.19 5.36 35.07 3.02
421 422 8.572855 AAGGAAATATTTTCAGGACTCTTCAG 57.427 34.615 9.19 0.00 0.00 3.02
422 423 7.922382 AGGAAATATTTTCAGGACTCTTCAGA 58.078 34.615 9.19 0.00 0.00 3.27
423 424 8.555729 AGGAAATATTTTCAGGACTCTTCAGAT 58.444 33.333 9.19 0.00 0.00 2.90
424 425 8.619546 GGAAATATTTTCAGGACTCTTCAGATG 58.380 37.037 1.43 0.00 0.00 2.90
425 426 8.517062 AAATATTTTCAGGACTCTTCAGATGG 57.483 34.615 0.00 0.00 0.00 3.51
426 427 4.982241 TTTTCAGGACTCTTCAGATGGT 57.018 40.909 0.00 0.00 0.00 3.55
427 428 3.969287 TTCAGGACTCTTCAGATGGTG 57.031 47.619 0.00 0.00 0.00 4.17
428 429 3.175438 TCAGGACTCTTCAGATGGTGA 57.825 47.619 0.00 0.00 0.00 4.02
429 430 3.510459 TCAGGACTCTTCAGATGGTGAA 58.490 45.455 0.00 0.00 43.26 3.18
430 431 3.259374 TCAGGACTCTTCAGATGGTGAAC 59.741 47.826 0.00 0.00 40.45 3.18
431 432 3.260380 CAGGACTCTTCAGATGGTGAACT 59.740 47.826 0.00 0.00 40.45 3.01
432 433 3.906846 AGGACTCTTCAGATGGTGAACTT 59.093 43.478 0.00 0.00 40.45 2.66
433 434 4.349342 AGGACTCTTCAGATGGTGAACTTT 59.651 41.667 0.00 0.00 40.45 2.66
434 435 5.066593 GGACTCTTCAGATGGTGAACTTTT 58.933 41.667 0.00 0.00 40.45 2.27
435 436 5.532779 GGACTCTTCAGATGGTGAACTTTTT 59.467 40.000 0.00 0.00 40.45 1.94
436 437 6.293680 GGACTCTTCAGATGGTGAACTTTTTC 60.294 42.308 0.00 0.00 40.45 2.29
437 438 6.122277 ACTCTTCAGATGGTGAACTTTTTCA 58.878 36.000 0.00 0.00 40.45 2.69
445 446 2.842208 TGAACTTTTTCAGTGCACGG 57.158 45.000 12.01 11.52 35.90 4.94
574 597 3.255642 GCAAACCTCAGAGCCAACAAATA 59.744 43.478 0.00 0.00 0.00 1.40
582 605 5.819991 TCAGAGCCAACAAATATTCTCCTT 58.180 37.500 0.00 0.00 0.00 3.36
583 606 5.882557 TCAGAGCCAACAAATATTCTCCTTC 59.117 40.000 0.00 0.00 0.00 3.46
584 607 5.067023 CAGAGCCAACAAATATTCTCCTTCC 59.933 44.000 0.00 0.00 0.00 3.46
585 608 4.934356 AGCCAACAAATATTCTCCTTCCA 58.066 39.130 0.00 0.00 0.00 3.53
616 639 8.706322 ATTTTACACCCAGACAAGATTTAACT 57.294 30.769 0.00 0.00 0.00 2.24
617 640 7.504924 TTTACACCCAGACAAGATTTAACTG 57.495 36.000 0.00 0.00 0.00 3.16
619 642 5.308825 ACACCCAGACAAGATTTAACTGAG 58.691 41.667 0.00 0.00 0.00 3.35
621 644 4.202461 ACCCAGACAAGATTTAACTGAGCA 60.202 41.667 0.00 0.00 0.00 4.26
626 649 7.308770 CCAGACAAGATTTAACTGAGCATGAAA 60.309 37.037 0.00 0.00 0.00 2.69
639 662 8.749026 ACTGAGCATGAAAATTATCATCTTCT 57.251 30.769 0.00 0.00 37.96 2.85
648 671 8.403236 TGAAAATTATCATCTTCTGACATGCAG 58.597 33.333 9.94 9.94 46.31 4.41
652 675 4.276058 TCATCTTCTGACATGCAGTTCA 57.724 40.909 14.21 0.00 45.14 3.18
656 679 4.454678 TCTTCTGACATGCAGTTCAGTTT 58.545 39.130 21.05 0.00 45.14 2.66
667 690 5.042593 TGCAGTTCAGTTTTGCATTTACAG 58.957 37.500 0.00 0.00 42.41 2.74
669 692 4.445385 CAGTTCAGTTTTGCATTTACAGGC 59.555 41.667 0.00 0.00 0.00 4.85
672 695 1.272212 AGTTTTGCATTTACAGGCGGG 59.728 47.619 0.00 0.00 0.00 6.13
684 707 1.476488 ACAGGCGGGCATGAATTAAAC 59.524 47.619 12.66 0.00 0.00 2.01
697 720 7.534918 GGCATGAATTAAACTGAATGTTTTTGC 59.465 33.333 0.00 0.00 45.69 3.68
698 721 8.068977 GCATGAATTAAACTGAATGTTTTTGCA 58.931 29.630 0.00 0.00 45.69 4.08
779 826 6.726258 AAATAAATGCCTTGCTTAAAGTGC 57.274 33.333 0.00 0.00 33.66 4.40
788 835 1.202989 TGCTTAAAGTGCCACCCATCA 60.203 47.619 0.00 0.00 0.00 3.07
789 836 1.202348 GCTTAAAGTGCCACCCATCAC 59.798 52.381 0.00 0.00 0.00 3.06
920 976 1.918957 CTTCCATCTTCCTCCCCTTGT 59.081 52.381 0.00 0.00 0.00 3.16
962 1019 1.144913 ACATAACACCACCACCAAGCT 59.855 47.619 0.00 0.00 0.00 3.74
966 1023 1.687563 ACACCACCACCAAGCTAAAC 58.312 50.000 0.00 0.00 0.00 2.01
967 1024 0.958822 CACCACCACCAAGCTAAACC 59.041 55.000 0.00 0.00 0.00 3.27
968 1025 0.553819 ACCACCACCAAGCTAAACCA 59.446 50.000 0.00 0.00 0.00 3.67
969 1026 1.146982 ACCACCACCAAGCTAAACCAT 59.853 47.619 0.00 0.00 0.00 3.55
970 1027 1.818674 CCACCACCAAGCTAAACCATC 59.181 52.381 0.00 0.00 0.00 3.51
971 1028 1.818674 CACCACCAAGCTAAACCATCC 59.181 52.381 0.00 0.00 0.00 3.51
972 1029 1.427368 ACCACCAAGCTAAACCATCCA 59.573 47.619 0.00 0.00 0.00 3.41
973 1030 2.094675 CCACCAAGCTAAACCATCCAG 58.905 52.381 0.00 0.00 0.00 3.86
974 1031 2.094675 CACCAAGCTAAACCATCCAGG 58.905 52.381 0.00 0.00 45.67 4.45
975 1032 1.106285 CCAAGCTAAACCATCCAGGC 58.894 55.000 0.00 0.00 43.14 4.85
976 1033 1.106285 CAAGCTAAACCATCCAGGCC 58.894 55.000 0.00 0.00 43.14 5.19
977 1034 1.002857 AAGCTAAACCATCCAGGCCT 58.997 50.000 0.00 0.00 43.14 5.19
1119 1188 3.339141 GAAGAGGTGCTTCCAAAGGTAG 58.661 50.000 0.00 0.00 45.90 3.18
1120 1189 1.630878 AGAGGTGCTTCCAAAGGTAGG 59.369 52.381 1.79 0.00 39.02 3.18
1230 1378 1.633915 AAGGGCAGGAGGCTGATGAG 61.634 60.000 0.00 0.00 44.01 2.90
1558 1957 1.753073 GATGAACCCAGGCTTGATTGG 59.247 52.381 0.00 0.00 0.00 3.16
1697 2109 1.516386 CGTCTCCCGGTTCATGTCG 60.516 63.158 0.00 0.00 0.00 4.35
1778 2190 4.197498 TACCGCGGCGAGGTAAGC 62.197 66.667 34.89 4.03 40.91 3.09
1783 2195 2.322081 GCGGCGAGGTAAGCAACAA 61.322 57.895 12.98 0.00 36.08 2.83
1833 2249 2.094659 CGGCATGGTCAGTGTCGAC 61.095 63.158 9.11 9.11 46.80 4.20
1865 2291 0.251832 TCGGCCTCTCCTCACTTTCT 60.252 55.000 0.00 0.00 0.00 2.52
1948 2374 2.082629 TTGCAGAGGTCTTCGTCGCA 62.083 55.000 0.00 0.00 36.79 5.10
1969 2395 1.835927 GCCTGGAGAAGAGCACACCT 61.836 60.000 0.00 0.00 0.00 4.00
1978 2404 3.584848 AGAAGAGCACACCTTACCAGAAT 59.415 43.478 0.00 0.00 0.00 2.40
1989 2415 7.547370 CACACCTTACCAGAATTTTGAACAAAA 59.453 33.333 13.72 13.72 43.48 2.44
2023 2450 7.011389 TCAGAACACTTTGTTGTAATCAGACAG 59.989 37.037 0.00 0.00 41.28 3.51
2027 2454 6.936900 ACACTTTGTTGTAATCAGACAGCTAT 59.063 34.615 0.00 0.00 32.27 2.97
2045 2472 6.259608 ACAGCTATAAACATAGAAAGCAGCAG 59.740 38.462 0.00 0.00 32.42 4.24
2047 2474 5.760253 GCTATAAACATAGAAAGCAGCAGGA 59.240 40.000 0.00 0.00 0.00 3.86
2051 2478 3.276857 ACATAGAAAGCAGCAGGACATG 58.723 45.455 0.00 0.00 0.00 3.21
2069 2496 9.325198 CAGGACATGCATGTTAGTATTTACTTA 57.675 33.333 31.82 0.00 41.95 2.24
2299 2726 1.971695 GAAGGTCCTTGGGTTGCCG 60.972 63.158 9.46 0.00 0.00 5.69
2321 2748 4.143333 CCGGCGGTCAGGTACAGG 62.143 72.222 19.97 0.00 0.00 4.00
2545 3065 5.297029 GCCTTCATTAAACTACCATGACCTC 59.703 44.000 0.00 0.00 0.00 3.85
2566 3095 1.239968 CGCTGCAAGGAGGAAGCTTT 61.240 55.000 0.00 0.00 33.41 3.51
2850 3387 7.717436 TGTGACACTGATAACAAACCTTTATCA 59.283 33.333 7.20 5.04 41.53 2.15
2998 3541 3.806521 CCAGGTGAAAATGAGCTATCGAG 59.193 47.826 0.00 0.00 0.00 4.04
3006 3549 8.008844 GTGAAAATGAGCTATCGAGATGAAATC 58.991 37.037 0.00 0.00 46.04 2.17
3023 3566 7.967890 ATGAAATCCTGAAAAATGTTGTTCC 57.032 32.000 0.00 0.00 0.00 3.62
3050 3611 5.359292 TGTCACCAAACAAATCTGACATCAA 59.641 36.000 0.00 0.00 37.03 2.57
3098 4523 4.383351 GCTCTTGAGAAGACAAAGTACGAC 59.617 45.833 1.30 0.00 33.12 4.34
3320 4763 0.032540 GCAGCAAAGACAAACCTGGG 59.967 55.000 0.00 0.00 0.00 4.45
3538 5002 7.066284 GGACAATGATGAGCACTTGTAAGTAAT 59.934 37.037 0.00 0.00 37.08 1.89
3539 5003 9.098355 GACAATGATGAGCACTTGTAAGTAATA 57.902 33.333 0.00 0.00 37.08 0.98
3598 5079 8.268850 ACAACATTAACTGCTAATAACTCTGG 57.731 34.615 0.00 0.00 0.00 3.86
3721 5245 3.865745 GTCGAATGGTATGGTGAGAACAG 59.134 47.826 0.00 0.00 0.00 3.16
3944 5477 2.295602 GGGGGCCTTCGTTCAGGTA 61.296 63.158 0.84 0.00 36.15 3.08
4266 6636 2.350868 CGCATCTATGAGTGGTCCGTAG 60.351 54.545 0.00 0.00 0.00 3.51
4504 6883 5.507985 GCAGCTGGTAAGTTGAGAAAAACAT 60.508 40.000 17.12 0.00 36.80 2.71
4505 6884 6.293955 GCAGCTGGTAAGTTGAGAAAAACATA 60.294 38.462 17.12 0.00 36.80 2.29
4506 6885 7.648142 CAGCTGGTAAGTTGAGAAAAACATAA 58.352 34.615 5.57 0.00 36.80 1.90
4508 6887 7.040409 AGCTGGTAAGTTGAGAAAAACATAAGG 60.040 37.037 0.00 0.00 32.21 2.69
4509 6888 7.255486 GCTGGTAAGTTGAGAAAAACATAAGGT 60.255 37.037 0.00 0.00 32.21 3.50
4512 6891 8.727910 GGTAAGTTGAGAAAAACATAAGGTAGG 58.272 37.037 0.00 0.00 32.21 3.18
4513 6892 9.281371 GTAAGTTGAGAAAAACATAAGGTAGGT 57.719 33.333 0.00 0.00 32.21 3.08
4514 6893 7.745620 AGTTGAGAAAAACATAAGGTAGGTG 57.254 36.000 0.00 0.00 32.21 4.00
4515 6894 7.514721 AGTTGAGAAAAACATAAGGTAGGTGA 58.485 34.615 0.00 0.00 32.21 4.02
4516 6895 7.444487 AGTTGAGAAAAACATAAGGTAGGTGAC 59.556 37.037 0.00 0.00 32.21 3.67
4524 6904 4.288626 ACATAAGGTAGGTGACACCAACAT 59.711 41.667 26.30 10.58 41.95 2.71
4537 6917 4.282496 ACACCAACATAACAGAACCCAAA 58.718 39.130 0.00 0.00 0.00 3.28
4565 6950 7.606858 ATTTCACTGATGTCATCTGTTACTG 57.393 36.000 19.50 10.78 39.09 2.74
4590 6975 2.103153 TTCAGGTCAAGACTGTCCCT 57.897 50.000 3.76 0.69 37.25 4.20
4596 6981 3.077088 AGGTCAAGACTGTCCCTAAGGTA 59.923 47.826 3.76 0.00 31.65 3.08
4650 7035 2.514592 GCGCCTGCTAGGATTGCA 60.515 61.111 0.00 0.00 37.67 4.08
4702 7087 4.648970 GCTGTTACGAAATTTACTGAGGC 58.351 43.478 0.00 0.00 0.00 4.70
4815 7200 4.059511 CCAATCATCAAGCTGCAAAACAA 58.940 39.130 1.02 0.00 0.00 2.83
4828 7213 5.006552 GCTGCAAAACAACAAAAGAAGCATA 59.993 36.000 0.00 0.00 0.00 3.14
4829 7214 6.293027 GCTGCAAAACAACAAAAGAAGCATAT 60.293 34.615 0.00 0.00 0.00 1.78
4843 7228 2.191400 AGCATATCAGGTCACACTGGT 58.809 47.619 0.00 0.00 38.98 4.00
4874 7261 9.458727 AACTGATGAATCTCTGAATATTGTGTT 57.541 29.630 0.00 0.00 0.00 3.32
5046 7457 9.904198 TGAAACTGGAACTAATCATGATGATTA 57.096 29.630 22.47 22.47 44.57 1.75
5102 7513 1.945394 GTGAGCCCTGCACTCATTATG 59.055 52.381 8.57 0.00 45.40 1.90
5103 7514 1.839354 TGAGCCCTGCACTCATTATGA 59.161 47.619 1.56 0.00 39.21 2.15
5104 7515 2.440627 TGAGCCCTGCACTCATTATGAT 59.559 45.455 1.56 0.00 39.21 2.45
5105 7516 3.647590 TGAGCCCTGCACTCATTATGATA 59.352 43.478 1.56 0.00 39.21 2.15
5106 7517 4.252073 GAGCCCTGCACTCATTATGATAG 58.748 47.826 0.00 0.00 34.18 2.08
5107 7518 3.649981 AGCCCTGCACTCATTATGATAGT 59.350 43.478 0.00 0.00 0.00 2.12
5155 7566 1.777199 GCGTCATGCAAAAGCAAGC 59.223 52.632 0.00 0.00 45.45 4.01
5211 7624 4.216257 ACATAAAGCAAGTAACACCAGCAG 59.784 41.667 0.00 0.00 0.00 4.24
5285 7878 8.272866 GGTTCAACATTTACAACATAACAAAGC 58.727 33.333 0.00 0.00 0.00 3.51
5290 7883 6.416455 ACATTTACAACATAACAAAGCACACG 59.584 34.615 0.00 0.00 0.00 4.49
5317 7910 5.431765 AGATGGTACTTCAGCAAACATAGG 58.568 41.667 0.00 0.00 38.36 2.57
5494 8088 1.378250 CAGAGCTGGAAGGGGCTTG 60.378 63.158 0.00 0.00 39.05 4.01
5503 8097 4.711949 AGGGGCTTGACAGCTGCG 62.712 66.667 15.27 0.75 46.44 5.18
5671 8265 1.270550 GGTGGAACTGCAATGGAACAG 59.729 52.381 0.00 0.00 38.82 3.16
5693 8290 7.453393 ACAGTTCAGGAAAATATGACTTCAGA 58.547 34.615 0.00 0.00 0.00 3.27
5714 8311 5.407995 CAGAAAGGAGACAAAGCAGTAGAAG 59.592 44.000 0.00 0.00 0.00 2.85
5770 8367 3.107601 CAGTGATCCCTGGAAGAAGGTA 58.892 50.000 0.00 0.00 35.34 3.08
5872 8474 7.569599 AAAAATTAAGACAGAGAGGGGACTA 57.430 36.000 0.00 0.00 44.43 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.612066 ACCTGAAATAAAATGAAAAACACATGT 57.388 25.926 0.00 0.00 0.00 3.21
9 10 9.562583 GCGTGTTATACCTGAAATAAAATGAAA 57.437 29.630 0.00 0.00 0.00 2.69
10 11 8.731605 TGCGTGTTATACCTGAAATAAAATGAA 58.268 29.630 0.00 0.00 0.00 2.57
11 12 8.270080 TGCGTGTTATACCTGAAATAAAATGA 57.730 30.769 0.00 0.00 0.00 2.57
12 13 8.181573 ACTGCGTGTTATACCTGAAATAAAATG 58.818 33.333 0.00 0.00 0.00 2.32
13 14 8.276252 ACTGCGTGTTATACCTGAAATAAAAT 57.724 30.769 0.00 0.00 0.00 1.82
14 15 7.388224 TGACTGCGTGTTATACCTGAAATAAAA 59.612 33.333 0.00 0.00 0.00 1.52
15 16 6.874664 TGACTGCGTGTTATACCTGAAATAAA 59.125 34.615 0.00 0.00 0.00 1.40
16 17 6.399743 TGACTGCGTGTTATACCTGAAATAA 58.600 36.000 0.00 0.00 0.00 1.40
17 18 5.968254 TGACTGCGTGTTATACCTGAAATA 58.032 37.500 0.00 0.00 0.00 1.40
18 19 4.827692 TGACTGCGTGTTATACCTGAAAT 58.172 39.130 0.00 0.00 0.00 2.17
19 20 4.260139 TGACTGCGTGTTATACCTGAAA 57.740 40.909 0.00 0.00 0.00 2.69
20 21 3.945981 TGACTGCGTGTTATACCTGAA 57.054 42.857 0.00 0.00 0.00 3.02
21 22 5.535030 AGATATGACTGCGTGTTATACCTGA 59.465 40.000 0.00 0.00 31.32 3.86
22 23 5.631096 CAGATATGACTGCGTGTTATACCTG 59.369 44.000 2.83 2.83 34.00 4.00
23 24 5.279006 CCAGATATGACTGCGTGTTATACCT 60.279 44.000 0.00 0.00 36.67 3.08
24 25 4.923871 CCAGATATGACTGCGTGTTATACC 59.076 45.833 0.00 0.00 36.67 2.73
25 26 5.769367 TCCAGATATGACTGCGTGTTATAC 58.231 41.667 0.00 0.00 36.67 1.47
26 27 6.399639 TTCCAGATATGACTGCGTGTTATA 57.600 37.500 0.00 0.00 36.67 0.98
27 28 4.937201 TCCAGATATGACTGCGTGTTAT 57.063 40.909 0.00 0.00 36.67 1.89
28 29 4.729227 TTCCAGATATGACTGCGTGTTA 57.271 40.909 0.00 0.00 36.67 2.41
29 30 3.610040 TTCCAGATATGACTGCGTGTT 57.390 42.857 0.00 0.00 36.67 3.32
30 31 3.525537 CTTTCCAGATATGACTGCGTGT 58.474 45.455 0.00 0.00 36.67 4.49
31 32 2.286294 GCTTTCCAGATATGACTGCGTG 59.714 50.000 0.00 0.00 36.67 5.34
32 33 2.555199 GCTTTCCAGATATGACTGCGT 58.445 47.619 0.00 0.00 36.67 5.24
33 34 1.524355 CGCTTTCCAGATATGACTGCG 59.476 52.381 0.00 0.00 36.67 5.18
34 35 1.869767 CCGCTTTCCAGATATGACTGC 59.130 52.381 0.00 0.00 36.67 4.40
35 36 3.126831 GACCGCTTTCCAGATATGACTG 58.873 50.000 0.00 0.00 37.61 3.51
36 37 2.766263 TGACCGCTTTCCAGATATGACT 59.234 45.455 0.00 0.00 0.00 3.41
37 38 3.179443 TGACCGCTTTCCAGATATGAC 57.821 47.619 0.00 0.00 0.00 3.06
38 39 3.904800 TTGACCGCTTTCCAGATATGA 57.095 42.857 0.00 0.00 0.00 2.15
39 40 5.505173 AATTTGACCGCTTTCCAGATATG 57.495 39.130 0.00 0.00 0.00 1.78
40 41 5.888161 AGAAATTTGACCGCTTTCCAGATAT 59.112 36.000 0.00 0.00 30.84 1.63
41 42 5.123820 CAGAAATTTGACCGCTTTCCAGATA 59.876 40.000 0.00 0.00 30.84 1.98
42 43 4.082125 AGAAATTTGACCGCTTTCCAGAT 58.918 39.130 0.00 0.00 30.84 2.90
43 44 3.253188 CAGAAATTTGACCGCTTTCCAGA 59.747 43.478 0.00 0.00 30.84 3.86
44 45 3.253188 TCAGAAATTTGACCGCTTTCCAG 59.747 43.478 0.00 0.00 30.84 3.86
45 46 3.218453 TCAGAAATTTGACCGCTTTCCA 58.782 40.909 0.00 0.00 30.84 3.53
46 47 3.915437 TCAGAAATTTGACCGCTTTCC 57.085 42.857 0.00 0.00 30.84 3.13
47 48 3.670523 GCTTCAGAAATTTGACCGCTTTC 59.329 43.478 0.00 0.00 0.00 2.62
48 49 3.642705 GCTTCAGAAATTTGACCGCTTT 58.357 40.909 0.00 0.00 0.00 3.51
49 50 2.350772 CGCTTCAGAAATTTGACCGCTT 60.351 45.455 0.00 0.00 0.00 4.68
50 51 1.197721 CGCTTCAGAAATTTGACCGCT 59.802 47.619 0.00 0.00 0.00 5.52
51 52 1.196808 TCGCTTCAGAAATTTGACCGC 59.803 47.619 0.00 0.00 0.00 5.68
52 53 2.159653 CCTCGCTTCAGAAATTTGACCG 60.160 50.000 0.00 0.00 0.00 4.79
53 54 2.414691 GCCTCGCTTCAGAAATTTGACC 60.415 50.000 0.00 0.00 0.00 4.02
54 55 2.485814 AGCCTCGCTTCAGAAATTTGAC 59.514 45.455 0.00 0.00 33.89 3.18
55 56 2.485426 CAGCCTCGCTTCAGAAATTTGA 59.515 45.455 0.00 0.00 36.40 2.69
56 57 2.227388 ACAGCCTCGCTTCAGAAATTTG 59.773 45.455 0.00 0.00 36.40 2.32
57 58 2.508526 ACAGCCTCGCTTCAGAAATTT 58.491 42.857 0.00 0.00 36.40 1.82
58 59 2.191128 ACAGCCTCGCTTCAGAAATT 57.809 45.000 0.00 0.00 36.40 1.82
59 60 2.191128 AACAGCCTCGCTTCAGAAAT 57.809 45.000 0.00 0.00 36.40 2.17
60 61 2.831685 TAACAGCCTCGCTTCAGAAA 57.168 45.000 0.00 0.00 36.40 2.52
61 62 4.465632 TTATAACAGCCTCGCTTCAGAA 57.534 40.909 0.00 0.00 36.40 3.02
62 63 4.465632 TTTATAACAGCCTCGCTTCAGA 57.534 40.909 0.00 0.00 36.40 3.27
63 64 5.741388 AATTTATAACAGCCTCGCTTCAG 57.259 39.130 0.00 0.00 36.40 3.02
64 65 7.282224 ACAATAATTTATAACAGCCTCGCTTCA 59.718 33.333 0.00 0.00 36.40 3.02
65 66 7.639945 ACAATAATTTATAACAGCCTCGCTTC 58.360 34.615 0.00 0.00 36.40 3.86
66 67 7.568199 ACAATAATTTATAACAGCCTCGCTT 57.432 32.000 0.00 0.00 36.40 4.68
67 68 7.568199 AACAATAATTTATAACAGCCTCGCT 57.432 32.000 0.00 0.00 40.77 4.93
68 69 7.378728 GGAAACAATAATTTATAACAGCCTCGC 59.621 37.037 0.00 0.00 0.00 5.03
69 70 7.586300 CGGAAACAATAATTTATAACAGCCTCG 59.414 37.037 0.00 0.00 0.00 4.63
70 71 7.378728 GCGGAAACAATAATTTATAACAGCCTC 59.621 37.037 0.00 0.00 0.00 4.70
71 72 7.068226 AGCGGAAACAATAATTTATAACAGCCT 59.932 33.333 0.00 0.00 0.00 4.58
72 73 7.200455 AGCGGAAACAATAATTTATAACAGCC 58.800 34.615 0.00 0.00 0.00 4.85
73 74 9.166126 GTAGCGGAAACAATAATTTATAACAGC 57.834 33.333 0.00 0.00 0.00 4.40
86 87 8.403236 GGTTGAAAATATAGTAGCGGAAACAAT 58.597 33.333 0.00 0.00 0.00 2.71
87 88 7.148205 GGGTTGAAAATATAGTAGCGGAAACAA 60.148 37.037 0.00 0.00 0.00 2.83
88 89 6.316890 GGGTTGAAAATATAGTAGCGGAAACA 59.683 38.462 0.00 0.00 0.00 2.83
89 90 6.238566 GGGGTTGAAAATATAGTAGCGGAAAC 60.239 42.308 0.00 0.00 0.00 2.78
90 91 5.824097 GGGGTTGAAAATATAGTAGCGGAAA 59.176 40.000 0.00 0.00 0.00 3.13
91 92 5.370679 GGGGTTGAAAATATAGTAGCGGAA 58.629 41.667 0.00 0.00 0.00 4.30
92 93 4.501915 CGGGGTTGAAAATATAGTAGCGGA 60.502 45.833 0.00 0.00 0.00 5.54
93 94 3.744426 CGGGGTTGAAAATATAGTAGCGG 59.256 47.826 0.00 0.00 0.00 5.52
94 95 4.374399 ACGGGGTTGAAAATATAGTAGCG 58.626 43.478 0.00 0.00 0.00 4.26
95 96 4.753610 GGACGGGGTTGAAAATATAGTAGC 59.246 45.833 0.00 0.00 0.00 3.58
96 97 4.986659 CGGACGGGGTTGAAAATATAGTAG 59.013 45.833 0.00 0.00 0.00 2.57
97 98 4.405358 ACGGACGGGGTTGAAAATATAGTA 59.595 41.667 0.00 0.00 0.00 1.82
98 99 3.198417 ACGGACGGGGTTGAAAATATAGT 59.802 43.478 0.00 0.00 0.00 2.12
99 100 3.800531 ACGGACGGGGTTGAAAATATAG 58.199 45.455 0.00 0.00 0.00 1.31
100 101 3.910568 ACGGACGGGGTTGAAAATATA 57.089 42.857 0.00 0.00 0.00 0.86
101 102 2.793288 ACGGACGGGGTTGAAAATAT 57.207 45.000 0.00 0.00 0.00 1.28
102 103 2.224475 TGAACGGACGGGGTTGAAAATA 60.224 45.455 0.00 0.00 0.00 1.40
103 104 1.241165 GAACGGACGGGGTTGAAAAT 58.759 50.000 0.00 0.00 0.00 1.82
104 105 0.107312 TGAACGGACGGGGTTGAAAA 60.107 50.000 0.00 0.00 0.00 2.29
105 106 0.814812 GTGAACGGACGGGGTTGAAA 60.815 55.000 0.00 0.00 0.00 2.69
106 107 1.227615 GTGAACGGACGGGGTTGAA 60.228 57.895 0.00 0.00 0.00 2.69
107 108 1.969200 TTGTGAACGGACGGGGTTGA 61.969 55.000 0.00 0.00 0.00 3.18
108 109 1.096386 TTTGTGAACGGACGGGGTTG 61.096 55.000 0.00 0.00 0.00 3.77
109 110 0.179012 ATTTGTGAACGGACGGGGTT 60.179 50.000 0.00 0.00 0.00 4.11
110 111 0.686224 TATTTGTGAACGGACGGGGT 59.314 50.000 0.00 0.00 0.00 4.95
111 112 2.032680 ATATTTGTGAACGGACGGGG 57.967 50.000 0.00 0.00 0.00 5.73
112 113 4.435425 TCTTATATTTGTGAACGGACGGG 58.565 43.478 0.00 0.00 0.00 5.28
113 114 5.522460 ACATCTTATATTTGTGAACGGACGG 59.478 40.000 0.00 0.00 0.00 4.79
114 115 6.583912 ACATCTTATATTTGTGAACGGACG 57.416 37.500 0.00 0.00 0.00 4.79
115 116 8.197988 AGAACATCTTATATTTGTGAACGGAC 57.802 34.615 0.00 0.00 0.00 4.79
116 117 9.878667 TTAGAACATCTTATATTTGTGAACGGA 57.121 29.630 0.00 0.00 0.00 4.69
237 238 9.877178 CTTCCAGTAATTAACTACTCTCATTGT 57.123 33.333 0.00 0.00 35.76 2.71
240 241 8.919145 CCTCTTCCAGTAATTAACTACTCTCAT 58.081 37.037 0.00 0.00 35.76 2.90
241 242 7.342284 CCCTCTTCCAGTAATTAACTACTCTCA 59.658 40.741 0.00 0.00 35.76 3.27
242 243 7.560626 TCCCTCTTCCAGTAATTAACTACTCTC 59.439 40.741 0.00 0.00 35.76 3.20
243 244 7.420029 TCCCTCTTCCAGTAATTAACTACTCT 58.580 38.462 0.00 0.00 35.76 3.24
244 245 7.657023 TCCCTCTTCCAGTAATTAACTACTC 57.343 40.000 0.00 0.00 35.76 2.59
245 246 8.625467 ATTCCCTCTTCCAGTAATTAACTACT 57.375 34.615 0.00 0.00 35.76 2.57
252 253 8.478066 GCAATTTTATTCCCTCTTCCAGTAATT 58.522 33.333 0.00 0.00 0.00 1.40
253 254 7.841222 AGCAATTTTATTCCCTCTTCCAGTAAT 59.159 33.333 0.00 0.00 0.00 1.89
254 255 7.182060 AGCAATTTTATTCCCTCTTCCAGTAA 58.818 34.615 0.00 0.00 0.00 2.24
255 256 6.731467 AGCAATTTTATTCCCTCTTCCAGTA 58.269 36.000 0.00 0.00 0.00 2.74
256 257 5.583932 AGCAATTTTATTCCCTCTTCCAGT 58.416 37.500 0.00 0.00 0.00 4.00
257 258 6.153340 TCAAGCAATTTTATTCCCTCTTCCAG 59.847 38.462 0.00 0.00 0.00 3.86
258 259 6.015918 TCAAGCAATTTTATTCCCTCTTCCA 58.984 36.000 0.00 0.00 0.00 3.53
259 260 6.530019 TCAAGCAATTTTATTCCCTCTTCC 57.470 37.500 0.00 0.00 0.00 3.46
261 262 9.875691 GTTTATCAAGCAATTTTATTCCCTCTT 57.124 29.630 0.00 0.00 0.00 2.85
262 263 9.034800 TGTTTATCAAGCAATTTTATTCCCTCT 57.965 29.630 0.00 0.00 0.00 3.69
263 264 9.822185 ATGTTTATCAAGCAATTTTATTCCCTC 57.178 29.630 0.00 0.00 0.00 4.30
264 265 9.822185 GATGTTTATCAAGCAATTTTATTCCCT 57.178 29.630 0.00 0.00 33.38 4.20
265 266 9.822185 AGATGTTTATCAAGCAATTTTATTCCC 57.178 29.630 0.00 0.00 35.70 3.97
283 284 9.537192 CCCGTAAGTATGAATGTAAGATGTTTA 57.463 33.333 0.00 0.00 0.00 2.01
284 285 8.262227 TCCCGTAAGTATGAATGTAAGATGTTT 58.738 33.333 0.00 0.00 0.00 2.83
285 286 7.788026 TCCCGTAAGTATGAATGTAAGATGTT 58.212 34.615 0.00 0.00 0.00 2.71
286 287 7.356089 TCCCGTAAGTATGAATGTAAGATGT 57.644 36.000 0.00 0.00 0.00 3.06
287 288 8.712363 CATTCCCGTAAGTATGAATGTAAGATG 58.288 37.037 0.00 0.00 0.00 2.90
288 289 8.647796 TCATTCCCGTAAGTATGAATGTAAGAT 58.352 33.333 9.97 0.00 0.00 2.40
289 290 8.014070 TCATTCCCGTAAGTATGAATGTAAGA 57.986 34.615 9.97 0.00 0.00 2.10
290 291 7.385205 CCTCATTCCCGTAAGTATGAATGTAAG 59.615 40.741 9.97 3.12 30.76 2.34
291 292 7.214381 CCTCATTCCCGTAAGTATGAATGTAA 58.786 38.462 9.97 0.00 30.76 2.41
292 293 6.239487 CCCTCATTCCCGTAAGTATGAATGTA 60.239 42.308 9.97 0.00 30.76 2.29
293 294 5.454755 CCCTCATTCCCGTAAGTATGAATGT 60.455 44.000 9.97 0.00 30.76 2.71
294 295 4.997395 CCCTCATTCCCGTAAGTATGAATG 59.003 45.833 0.00 0.00 30.76 2.67
295 296 4.905456 TCCCTCATTCCCGTAAGTATGAAT 59.095 41.667 0.00 0.00 30.76 2.57
296 297 4.291792 TCCCTCATTCCCGTAAGTATGAA 58.708 43.478 0.00 0.00 30.76 2.57
297 298 3.918566 TCCCTCATTCCCGTAAGTATGA 58.081 45.455 0.00 0.00 0.00 2.15
298 299 4.891992 ATCCCTCATTCCCGTAAGTATG 57.108 45.455 0.00 0.00 0.00 2.39
299 300 5.842328 TGTTATCCCTCATTCCCGTAAGTAT 59.158 40.000 0.00 0.00 0.00 2.12
300 301 5.210430 TGTTATCCCTCATTCCCGTAAGTA 58.790 41.667 0.00 0.00 0.00 2.24
301 302 4.035112 TGTTATCCCTCATTCCCGTAAGT 58.965 43.478 0.00 0.00 0.00 2.24
302 303 4.682778 TGTTATCCCTCATTCCCGTAAG 57.317 45.455 0.00 0.00 0.00 2.34
303 304 4.745478 GCATGTTATCCCTCATTCCCGTAA 60.745 45.833 0.00 0.00 0.00 3.18
304 305 3.244422 GCATGTTATCCCTCATTCCCGTA 60.244 47.826 0.00 0.00 0.00 4.02
305 306 2.487265 GCATGTTATCCCTCATTCCCGT 60.487 50.000 0.00 0.00 0.00 5.28
306 307 2.154462 GCATGTTATCCCTCATTCCCG 58.846 52.381 0.00 0.00 0.00 5.14
307 308 2.154462 CGCATGTTATCCCTCATTCCC 58.846 52.381 0.00 0.00 0.00 3.97
308 309 2.851195 ACGCATGTTATCCCTCATTCC 58.149 47.619 0.00 0.00 0.00 3.01
309 310 4.900635 AAACGCATGTTATCCCTCATTC 57.099 40.909 0.00 0.00 37.31 2.67
310 311 5.659440 AAAAACGCATGTTATCCCTCATT 57.341 34.783 0.00 0.00 37.31 2.57
338 339 9.982291 GAAACAGATTAATTAGCATCGTTTGTA 57.018 29.630 16.20 0.00 31.91 2.41
339 340 7.968405 GGAAACAGATTAATTAGCATCGTTTGT 59.032 33.333 16.20 5.48 31.91 2.83
340 341 7.967854 TGGAAACAGATTAATTAGCATCGTTTG 59.032 33.333 16.20 5.06 31.91 2.93
341 342 8.050778 TGGAAACAGATTAATTAGCATCGTTT 57.949 30.769 13.67 13.67 33.16 3.60
342 343 7.624360 TGGAAACAGATTAATTAGCATCGTT 57.376 32.000 0.00 0.00 35.01 3.85
359 360 4.764050 TGTCTACAAACTCCTGGAAACA 57.236 40.909 0.00 0.00 39.59 2.83
360 361 6.635030 AAATGTCTACAAACTCCTGGAAAC 57.365 37.500 0.00 0.00 0.00 2.78
361 362 7.340743 TCAAAAATGTCTACAAACTCCTGGAAA 59.659 33.333 0.00 0.00 0.00 3.13
362 363 6.831353 TCAAAAATGTCTACAAACTCCTGGAA 59.169 34.615 0.00 0.00 0.00 3.53
363 364 6.361433 TCAAAAATGTCTACAAACTCCTGGA 58.639 36.000 0.00 0.00 0.00 3.86
364 365 6.633500 TCAAAAATGTCTACAAACTCCTGG 57.367 37.500 0.00 0.00 0.00 4.45
365 366 7.141363 CCTTCAAAAATGTCTACAAACTCCTG 58.859 38.462 0.00 0.00 0.00 3.86
366 367 6.833933 ACCTTCAAAAATGTCTACAAACTCCT 59.166 34.615 0.00 0.00 0.00 3.69
367 368 7.039313 ACCTTCAAAAATGTCTACAAACTCC 57.961 36.000 0.00 0.00 0.00 3.85
368 369 8.926715 AAACCTTCAAAAATGTCTACAAACTC 57.073 30.769 0.00 0.00 0.00 3.01
369 370 9.150348 CAAAACCTTCAAAAATGTCTACAAACT 57.850 29.630 0.00 0.00 0.00 2.66
370 371 9.145865 TCAAAACCTTCAAAAATGTCTACAAAC 57.854 29.630 0.00 0.00 0.00 2.93
371 372 9.712305 TTCAAAACCTTCAAAAATGTCTACAAA 57.288 25.926 0.00 0.00 0.00 2.83
372 373 9.364989 CTTCAAAACCTTCAAAAATGTCTACAA 57.635 29.630 0.00 0.00 0.00 2.41
373 374 7.978975 CCTTCAAAACCTTCAAAAATGTCTACA 59.021 33.333 0.00 0.00 0.00 2.74
374 375 8.194769 TCCTTCAAAACCTTCAAAAATGTCTAC 58.805 33.333 0.00 0.00 0.00 2.59
375 376 8.299990 TCCTTCAAAACCTTCAAAAATGTCTA 57.700 30.769 0.00 0.00 0.00 2.59
376 377 7.181569 TCCTTCAAAACCTTCAAAAATGTCT 57.818 32.000 0.00 0.00 0.00 3.41
377 378 7.841915 TTCCTTCAAAACCTTCAAAAATGTC 57.158 32.000 0.00 0.00 0.00 3.06
378 379 8.806429 ATTTCCTTCAAAACCTTCAAAAATGT 57.194 26.923 0.00 0.00 0.00 2.71
385 386 9.762933 CTGAAAATATTTCCTTCAAAACCTTCA 57.237 29.630 0.10 0.00 0.00 3.02
386 387 9.208022 CCTGAAAATATTTCCTTCAAAACCTTC 57.792 33.333 0.10 0.00 0.00 3.46
387 388 8.933653 TCCTGAAAATATTTCCTTCAAAACCTT 58.066 29.630 0.10 0.00 0.00 3.50
388 389 8.367911 GTCCTGAAAATATTTCCTTCAAAACCT 58.632 33.333 0.10 0.00 0.00 3.50
389 390 8.367911 AGTCCTGAAAATATTTCCTTCAAAACC 58.632 33.333 0.10 0.00 0.00 3.27
390 391 9.411801 GAGTCCTGAAAATATTTCCTTCAAAAC 57.588 33.333 0.10 3.67 0.00 2.43
391 392 9.367160 AGAGTCCTGAAAATATTTCCTTCAAAA 57.633 29.630 0.10 0.00 0.00 2.44
392 393 8.940397 AGAGTCCTGAAAATATTTCCTTCAAA 57.060 30.769 0.10 0.00 0.00 2.69
393 394 8.940397 AAGAGTCCTGAAAATATTTCCTTCAA 57.060 30.769 0.10 0.00 0.00 2.69
394 395 8.163408 TGAAGAGTCCTGAAAATATTTCCTTCA 58.837 33.333 0.10 12.05 34.60 3.02
395 396 8.567285 TGAAGAGTCCTGAAAATATTTCCTTC 57.433 34.615 0.10 0.00 0.00 3.46
396 397 8.386264 TCTGAAGAGTCCTGAAAATATTTCCTT 58.614 33.333 0.10 0.00 0.00 3.36
397 398 7.922382 TCTGAAGAGTCCTGAAAATATTTCCT 58.078 34.615 0.10 0.00 0.00 3.36
398 399 8.619546 CATCTGAAGAGTCCTGAAAATATTTCC 58.380 37.037 0.10 0.00 0.00 3.13
399 400 8.619546 CCATCTGAAGAGTCCTGAAAATATTTC 58.380 37.037 0.10 0.00 0.00 2.17
400 401 8.112183 ACCATCTGAAGAGTCCTGAAAATATTT 58.888 33.333 0.00 0.00 0.00 1.40
401 402 7.555554 CACCATCTGAAGAGTCCTGAAAATATT 59.444 37.037 0.00 0.00 0.00 1.28
402 403 7.052873 CACCATCTGAAGAGTCCTGAAAATAT 58.947 38.462 0.00 0.00 0.00 1.28
403 404 6.213397 TCACCATCTGAAGAGTCCTGAAAATA 59.787 38.462 0.00 0.00 0.00 1.40
404 405 5.013495 TCACCATCTGAAGAGTCCTGAAAAT 59.987 40.000 0.00 0.00 0.00 1.82
405 406 4.347876 TCACCATCTGAAGAGTCCTGAAAA 59.652 41.667 0.00 0.00 0.00 2.29
406 407 3.903714 TCACCATCTGAAGAGTCCTGAAA 59.096 43.478 0.00 0.00 0.00 2.69
407 408 3.510459 TCACCATCTGAAGAGTCCTGAA 58.490 45.455 0.00 0.00 0.00 3.02
408 409 3.175438 TCACCATCTGAAGAGTCCTGA 57.825 47.619 0.00 0.00 0.00 3.86
409 410 3.260380 AGTTCACCATCTGAAGAGTCCTG 59.740 47.826 0.00 0.00 39.69 3.86
410 411 3.515562 AGTTCACCATCTGAAGAGTCCT 58.484 45.455 0.00 0.00 39.69 3.85
411 412 3.971245 AGTTCACCATCTGAAGAGTCC 57.029 47.619 0.00 0.00 39.69 3.85
412 413 6.260936 TGAAAAAGTTCACCATCTGAAGAGTC 59.739 38.462 0.00 0.00 39.69 3.36
413 414 6.122277 TGAAAAAGTTCACCATCTGAAGAGT 58.878 36.000 0.00 0.00 39.69 3.24
414 415 6.261826 ACTGAAAAAGTTCACCATCTGAAGAG 59.738 38.462 0.00 0.00 39.69 2.85
415 416 6.038603 CACTGAAAAAGTTCACCATCTGAAGA 59.961 38.462 0.00 0.00 39.69 2.87
416 417 6.204359 CACTGAAAAAGTTCACCATCTGAAG 58.796 40.000 0.00 0.00 39.69 3.02
417 418 5.450412 GCACTGAAAAAGTTCACCATCTGAA 60.450 40.000 0.00 0.00 38.88 3.02
418 419 4.036734 GCACTGAAAAAGTTCACCATCTGA 59.963 41.667 0.00 0.00 38.88 3.27
419 420 4.202040 TGCACTGAAAAAGTTCACCATCTG 60.202 41.667 0.00 0.00 38.88 2.90
420 421 3.953612 TGCACTGAAAAAGTTCACCATCT 59.046 39.130 0.00 0.00 38.88 2.90
421 422 4.044426 GTGCACTGAAAAAGTTCACCATC 58.956 43.478 10.32 0.00 44.46 3.51
422 423 3.489059 CGTGCACTGAAAAAGTTCACCAT 60.489 43.478 16.19 0.00 46.61 3.55
423 424 2.159448 CGTGCACTGAAAAAGTTCACCA 60.159 45.455 16.19 0.00 46.61 4.17
424 425 2.450160 CGTGCACTGAAAAAGTTCACC 58.550 47.619 16.19 0.00 46.61 4.02
425 426 2.450160 CCGTGCACTGAAAAAGTTCAC 58.550 47.619 16.19 0.00 46.07 3.18
426 427 1.403679 CCCGTGCACTGAAAAAGTTCA 59.596 47.619 16.19 0.00 41.57 3.18
427 428 1.404035 ACCCGTGCACTGAAAAAGTTC 59.596 47.619 16.19 0.00 36.83 3.01
428 429 1.134175 CACCCGTGCACTGAAAAAGTT 59.866 47.619 16.19 0.00 36.83 2.66
429 430 0.738389 CACCCGTGCACTGAAAAAGT 59.262 50.000 16.19 0.00 40.93 2.66
430 431 3.549997 CACCCGTGCACTGAAAAAG 57.450 52.632 16.19 0.00 0.00 2.27
445 446 6.478344 CAGAAGAGTCTTGTATTCTATGCACC 59.522 42.308 10.90 0.00 31.00 5.01
574 597 9.190317 GGTGTAAAATTAAGATGGAAGGAGAAT 57.810 33.333 0.00 0.00 0.00 2.40
582 605 6.785076 TGTCTGGGTGTAAAATTAAGATGGA 58.215 36.000 0.00 0.00 0.00 3.41
583 606 7.393234 TCTTGTCTGGGTGTAAAATTAAGATGG 59.607 37.037 0.00 0.00 0.00 3.51
584 607 8.335532 TCTTGTCTGGGTGTAAAATTAAGATG 57.664 34.615 0.00 0.00 0.00 2.90
585 608 9.533831 AATCTTGTCTGGGTGTAAAATTAAGAT 57.466 29.630 0.00 0.00 33.88 2.40
616 639 8.618677 GTCAGAAGATGATAATTTTCATGCTCA 58.381 33.333 15.05 0.00 40.92 4.26
617 640 8.618677 TGTCAGAAGATGATAATTTTCATGCTC 58.381 33.333 15.05 10.89 40.92 4.26
619 642 9.181805 CATGTCAGAAGATGATAATTTTCATGC 57.818 33.333 15.05 7.78 40.92 4.06
621 644 8.909923 TGCATGTCAGAAGATGATAATTTTCAT 58.090 29.630 10.70 10.70 40.92 2.57
626 649 7.555195 TGAACTGCATGTCAGAAGATGATAATT 59.445 33.333 19.64 4.02 45.72 1.40
630 653 4.840271 TGAACTGCATGTCAGAAGATGAT 58.160 39.130 19.64 0.00 45.72 2.45
631 654 4.251268 CTGAACTGCATGTCAGAAGATGA 58.749 43.478 17.76 2.10 45.72 2.92
639 662 2.426381 TGCAAAACTGAACTGCATGTCA 59.574 40.909 0.00 0.00 41.01 3.58
648 671 3.425193 CGCCTGTAAATGCAAAACTGAAC 59.575 43.478 0.00 0.00 0.00 3.18
652 675 1.272212 CCCGCCTGTAAATGCAAAACT 59.728 47.619 0.00 0.00 0.00 2.66
656 679 0.969917 ATGCCCGCCTGTAAATGCAA 60.970 50.000 0.00 0.00 31.81 4.08
667 690 1.748493 TCAGTTTAATTCATGCCCGCC 59.252 47.619 0.00 0.00 0.00 6.13
669 692 4.997565 ACATTCAGTTTAATTCATGCCCG 58.002 39.130 0.00 0.00 0.00 6.13
684 707 3.443037 TCGTTGGTGCAAAAACATTCAG 58.557 40.909 11.96 0.00 0.00 3.02
746 789 5.934043 GCAAGGCATTTATTTTGTTCCTCTT 59.066 36.000 0.00 0.00 0.00 2.85
749 792 5.488262 AGCAAGGCATTTATTTTGTTCCT 57.512 34.783 0.00 0.00 0.00 3.36
779 826 2.307098 AGGAAAGAAGAGTGATGGGTGG 59.693 50.000 0.00 0.00 0.00 4.61
788 835 4.103943 AGAGGAAGCAAAGGAAAGAAGAGT 59.896 41.667 0.00 0.00 0.00 3.24
789 836 4.650734 AGAGGAAGCAAAGGAAAGAAGAG 58.349 43.478 0.00 0.00 0.00 2.85
854 901 2.487762 CTGTCTCTGTCTCTGTCTGTCC 59.512 54.545 0.00 0.00 0.00 4.02
920 976 4.640201 GTGATGGCAAGGCAAGTTTATAGA 59.360 41.667 0.00 0.00 0.00 1.98
962 1019 1.494721 GATGGAGGCCTGGATGGTTTA 59.505 52.381 12.00 0.00 38.35 2.01
966 1023 1.759881 GAGATGGAGGCCTGGATGG 59.240 63.158 12.00 0.00 39.35 3.51
967 1024 1.058428 TGGAGATGGAGGCCTGGATG 61.058 60.000 12.00 0.00 0.00 3.51
968 1025 1.059006 GTGGAGATGGAGGCCTGGAT 61.059 60.000 12.00 0.00 0.00 3.41
969 1026 1.690633 GTGGAGATGGAGGCCTGGA 60.691 63.158 12.00 0.00 0.00 3.86
970 1027 2.750657 GGTGGAGATGGAGGCCTGG 61.751 68.421 12.00 0.00 0.00 4.45
971 1028 1.692042 AGGTGGAGATGGAGGCCTG 60.692 63.158 12.00 0.00 0.00 4.85
972 1029 1.383803 GAGGTGGAGATGGAGGCCT 60.384 63.158 3.86 3.86 0.00 5.19
973 1030 1.690633 TGAGGTGGAGATGGAGGCC 60.691 63.158 0.00 0.00 0.00 5.19
974 1031 1.828768 CTGAGGTGGAGATGGAGGC 59.171 63.158 0.00 0.00 0.00 4.70
975 1032 0.690411 AGCTGAGGTGGAGATGGAGG 60.690 60.000 0.00 0.00 0.00 4.30
976 1033 0.752054 GAGCTGAGGTGGAGATGGAG 59.248 60.000 0.00 0.00 0.00 3.86
977 1034 0.041684 TGAGCTGAGGTGGAGATGGA 59.958 55.000 0.00 0.00 0.00 3.41
1119 1188 1.944709 GTGTTGTGGACTTGTGGTACC 59.055 52.381 4.43 4.43 0.00 3.34
1120 1189 2.634600 TGTGTTGTGGACTTGTGGTAC 58.365 47.619 0.00 0.00 0.00 3.34
1179 1295 3.449489 TGCAGAGCAAGGAAGGATCCG 62.449 57.143 5.98 0.00 41.71 4.18
1230 1378 0.747283 CTCCATCAGCTGCTGGTTCC 60.747 60.000 30.45 0.00 33.31 3.62
1538 1802 1.753073 CCAATCAAGCCTGGGTTCATC 59.247 52.381 8.43 0.00 0.00 2.92
1539 1803 1.856629 CCAATCAAGCCTGGGTTCAT 58.143 50.000 8.43 0.00 0.00 2.57
1558 1957 3.111098 CTGAAGAAACAACAACAGCAGC 58.889 45.455 0.00 0.00 0.00 5.25
1697 2109 1.208614 CTTGCCGCTCAGCTTTGAC 59.791 57.895 0.00 0.00 0.00 3.18
1751 2163 1.082117 CGCCGCGGTAGTTCAGATTT 61.082 55.000 28.70 0.00 0.00 2.17
1753 2165 2.104331 CGCCGCGGTAGTTCAGAT 59.896 61.111 28.70 0.00 0.00 2.90
1778 2190 4.548494 TCAACATGCATGCTTAGTTGTTG 58.452 39.130 30.59 28.51 43.14 3.33
1783 2195 5.505159 CGATCAATCAACATGCATGCTTAGT 60.505 40.000 26.53 11.60 0.00 2.24
1833 2249 1.300233 GGCCGAGCTCATTCTACCG 60.300 63.158 15.40 0.00 0.00 4.02
1865 2291 2.417586 CGCTGATCATCAGTTTCTGCAA 59.582 45.455 16.28 0.00 45.94 4.08
1948 2374 1.537397 TGTGCTCTTCTCCAGGCCT 60.537 57.895 0.00 0.00 0.00 5.19
1996 2422 7.498900 TGTCTGATTACAACAAAGTGTTCTGAT 59.501 33.333 0.00 0.00 38.77 2.90
1997 2423 6.821160 TGTCTGATTACAACAAAGTGTTCTGA 59.179 34.615 0.00 0.00 38.77 3.27
2005 2431 9.760660 GTTTATAGCTGTCTGATTACAACAAAG 57.239 33.333 0.00 0.00 0.00 2.77
2023 2450 5.760253 TCCTGCTGCTTTCTATGTTTATAGC 59.240 40.000 0.00 0.00 36.92 2.97
2027 2454 4.905429 TGTCCTGCTGCTTTCTATGTTTA 58.095 39.130 0.00 0.00 0.00 2.01
2061 2488 9.630098 CAGCAAACACATCTTTGATAAGTAAAT 57.370 29.630 0.00 0.00 33.61 1.40
2064 2491 6.349280 GCCAGCAAACACATCTTTGATAAGTA 60.349 38.462 0.00 0.00 33.61 2.24
2069 2496 2.895404 AGCCAGCAAACACATCTTTGAT 59.105 40.909 0.00 0.00 33.61 2.57
2070 2497 2.034939 CAGCCAGCAAACACATCTTTGA 59.965 45.455 0.00 0.00 33.61 2.69
2072 2499 2.034124 ACAGCCAGCAAACACATCTTT 58.966 42.857 0.00 0.00 0.00 2.52
2073 2500 1.696063 ACAGCCAGCAAACACATCTT 58.304 45.000 0.00 0.00 0.00 2.40
2074 2501 1.338973 CAACAGCCAGCAAACACATCT 59.661 47.619 0.00 0.00 0.00 2.90
2075 2502 1.774639 CAACAGCCAGCAAACACATC 58.225 50.000 0.00 0.00 0.00 3.06
2076 2503 0.249573 GCAACAGCCAGCAAACACAT 60.250 50.000 0.00 0.00 0.00 3.21
2077 2504 1.141449 GCAACAGCCAGCAAACACA 59.859 52.632 0.00 0.00 0.00 3.72
2078 2505 0.872881 CTGCAACAGCCAGCAAACAC 60.873 55.000 0.00 0.00 40.73 3.32
2079 2506 1.438399 CTGCAACAGCCAGCAAACA 59.562 52.632 0.00 0.00 40.73 2.83
2080 2507 1.300388 CCTGCAACAGCCAGCAAAC 60.300 57.895 0.00 0.00 40.73 2.93
2081 2508 1.329171 AACCTGCAACAGCCAGCAAA 61.329 50.000 0.00 0.00 40.73 3.68
2082 2509 1.329171 AAACCTGCAACAGCCAGCAA 61.329 50.000 0.00 0.00 40.73 3.91
2083 2510 1.737355 GAAACCTGCAACAGCCAGCA 61.737 55.000 0.00 0.00 39.25 4.41
2086 2513 1.108727 CCTGAAACCTGCAACAGCCA 61.109 55.000 0.00 0.00 0.00 4.75
2299 2726 1.829533 TACCTGACCGCCGGTATCC 60.830 63.158 9.73 0.00 35.25 2.59
2545 3065 2.684843 GCTTCCTCCTTGCAGCGTG 61.685 63.158 0.00 0.00 0.00 5.34
2566 3095 1.001293 AGATGTTCGAGCAGCTGTCAA 59.999 47.619 19.51 6.38 33.46 3.18
2815 3352 6.524734 TGTTATCAGTGTCACATTCAGTTCT 58.475 36.000 5.62 0.00 0.00 3.01
2850 3387 4.202609 ACAGAAGAATCCTGAAACCACCAT 60.203 41.667 0.00 0.00 35.69 3.55
2892 3431 1.565390 CCATGTCTGGCTTCCCCTCA 61.565 60.000 0.00 0.00 35.23 3.86
2998 3541 7.874528 AGGAACAACATTTTTCAGGATTTCATC 59.125 33.333 0.00 0.00 0.00 2.92
3006 3549 5.067674 TGACAGAGGAACAACATTTTTCAGG 59.932 40.000 0.00 0.00 0.00 3.86
3015 3558 3.013921 GTTTGGTGACAGAGGAACAACA 58.986 45.455 0.00 0.00 44.54 3.33
3016 3559 3.013921 TGTTTGGTGACAGAGGAACAAC 58.986 45.455 0.00 0.00 44.54 3.32
3017 3560 3.358111 TGTTTGGTGACAGAGGAACAA 57.642 42.857 0.00 0.00 44.54 2.83
3023 3566 4.576053 TGTCAGATTTGTTTGGTGACAGAG 59.424 41.667 0.00 0.00 41.92 3.35
3050 3611 2.503356 TGCAATTGTTCCCTGTTGGTTT 59.497 40.909 7.40 0.00 34.77 3.27
3098 4523 2.159240 TCTCCACTTGACATCCGAATCG 60.159 50.000 0.00 0.00 0.00 3.34
3320 4763 1.866063 GCGTAGTGGCTCTCATACTGC 60.866 57.143 0.00 0.00 0.00 4.40
3551 5026 9.093970 GTTGTCAACAGTAAATTAAAAAGCCTT 57.906 29.630 10.93 0.00 0.00 4.35
3568 5044 9.062524 AGTTATTAGCAGTTAATGTTGTCAACA 57.937 29.630 20.28 20.28 46.94 3.33
3569 5045 9.543018 GAGTTATTAGCAGTTAATGTTGTCAAC 57.457 33.333 8.86 8.86 33.96 3.18
3583 5064 5.330455 TCACAGTCCAGAGTTATTAGCAG 57.670 43.478 0.00 0.00 0.00 4.24
3598 5079 5.757320 CCTCTGGTTGAATCATATCACAGTC 59.243 44.000 0.00 0.00 29.93 3.51
3613 5135 1.497161 CCCTAGGTACCCTCTGGTTG 58.503 60.000 8.74 0.00 44.75 3.77
3721 5245 0.035915 GACAAGGTCCCTGAGCTTCC 60.036 60.000 5.62 0.00 45.53 3.46
4504 6883 5.307456 TGTTATGTTGGTGTCACCTACCTTA 59.693 40.000 27.05 18.19 42.18 2.69
4505 6884 4.103469 TGTTATGTTGGTGTCACCTACCTT 59.897 41.667 27.05 19.00 42.18 3.50
4506 6885 3.649023 TGTTATGTTGGTGTCACCTACCT 59.351 43.478 27.05 21.51 42.18 3.08
4508 6887 4.890088 TCTGTTATGTTGGTGTCACCTAC 58.110 43.478 24.56 24.56 42.97 3.18
4509 6888 5.302360 GTTCTGTTATGTTGGTGTCACCTA 58.698 41.667 22.56 12.89 39.58 3.08
4512 6891 3.252458 GGGTTCTGTTATGTTGGTGTCAC 59.748 47.826 0.00 0.00 0.00 3.67
4513 6892 3.117851 TGGGTTCTGTTATGTTGGTGTCA 60.118 43.478 0.00 0.00 0.00 3.58
4514 6893 3.482436 TGGGTTCTGTTATGTTGGTGTC 58.518 45.455 0.00 0.00 0.00 3.67
4515 6894 3.586470 TGGGTTCTGTTATGTTGGTGT 57.414 42.857 0.00 0.00 0.00 4.16
4516 6895 4.500716 GGTTTGGGTTCTGTTATGTTGGTG 60.501 45.833 0.00 0.00 0.00 4.17
4524 6904 5.659079 AGTGAAATTGGTTTGGGTTCTGTTA 59.341 36.000 0.00 0.00 0.00 2.41
4537 6917 5.319453 ACAGATGACATCAGTGAAATTGGT 58.681 37.500 17.57 0.00 0.00 3.67
4565 6950 2.945668 ACAGTCTTGACCTGAAAACAGC 59.054 45.455 0.00 0.00 34.04 4.40
4578 6963 2.168728 GCCTACCTTAGGGACAGTCTTG 59.831 54.545 2.32 0.00 46.32 3.02
4590 6975 0.247185 CGGGTTGTTCGCCTACCTTA 59.753 55.000 5.76 0.00 32.46 2.69
4638 7023 1.522092 CCTCGGTGCAATCCTAGCA 59.478 57.895 0.00 0.00 40.19 3.49
4650 7035 1.679898 CCTTTCTCTTGGCCTCGGT 59.320 57.895 3.32 0.00 0.00 4.69
4702 7087 1.134699 TCAGTTGCTTCCCTGCTATCG 60.135 52.381 0.00 0.00 0.00 2.92
4709 7094 0.398318 GGTCAGTCAGTTGCTTCCCT 59.602 55.000 0.00 0.00 0.00 4.20
4815 7200 5.182001 GTGTGACCTGATATGCTTCTTTTGT 59.818 40.000 0.00 0.00 0.00 2.83
4828 7213 6.013725 TCAGTTTTATACCAGTGTGACCTGAT 60.014 38.462 3.16 0.00 34.23 2.90
4829 7214 5.305902 TCAGTTTTATACCAGTGTGACCTGA 59.694 40.000 3.16 0.00 34.23 3.86
4868 7253 0.882484 TCGCGATCCTGCAAACACAA 60.882 50.000 3.71 0.00 34.15 3.33
4872 7259 1.970917 CTGGTCGCGATCCTGCAAAC 61.971 60.000 18.31 0.00 34.15 2.93
4874 7261 2.125552 CTGGTCGCGATCCTGCAA 60.126 61.111 18.31 0.00 34.15 4.08
5034 7445 9.734984 TTGCATTACTCTCATAATCATCATGAT 57.265 29.630 1.18 1.18 39.09 2.45
5035 7446 9.563748 TTTGCATTACTCTCATAATCATCATGA 57.436 29.630 0.00 0.00 0.00 3.07
5046 7457 6.233434 TCTTCACACTTTGCATTACTCTCAT 58.767 36.000 0.00 0.00 0.00 2.90
5102 7513 3.329386 TGCTGTTGCTTCACTCACTATC 58.671 45.455 0.00 0.00 40.48 2.08
5103 7514 3.244353 ACTGCTGTTGCTTCACTCACTAT 60.244 43.478 0.00 0.00 40.48 2.12
5104 7515 2.103094 ACTGCTGTTGCTTCACTCACTA 59.897 45.455 0.00 0.00 40.48 2.74
5105 7516 1.134280 ACTGCTGTTGCTTCACTCACT 60.134 47.619 0.00 0.00 40.48 3.41
5106 7517 1.303309 ACTGCTGTTGCTTCACTCAC 58.697 50.000 0.00 0.00 40.48 3.51
5107 7518 2.042686 AACTGCTGTTGCTTCACTCA 57.957 45.000 8.32 0.00 40.48 3.41
5174 7585 7.445402 ACTTGCTTTATGTTGTCTTATCACTGT 59.555 33.333 0.00 0.00 0.00 3.55
5175 7586 7.810658 ACTTGCTTTATGTTGTCTTATCACTG 58.189 34.615 0.00 0.00 0.00 3.66
5176 7587 7.986085 ACTTGCTTTATGTTGTCTTATCACT 57.014 32.000 0.00 0.00 0.00 3.41
5177 7588 9.543018 GTTACTTGCTTTATGTTGTCTTATCAC 57.457 33.333 0.00 0.00 0.00 3.06
5178 7589 9.278978 TGTTACTTGCTTTATGTTGTCTTATCA 57.721 29.630 0.00 0.00 0.00 2.15
5179 7590 9.543018 GTGTTACTTGCTTTATGTTGTCTTATC 57.457 33.333 0.00 0.00 0.00 1.75
5180 7591 8.512138 GGTGTTACTTGCTTTATGTTGTCTTAT 58.488 33.333 0.00 0.00 0.00 1.73
5181 7592 7.499563 TGGTGTTACTTGCTTTATGTTGTCTTA 59.500 33.333 0.00 0.00 0.00 2.10
5183 7594 5.825679 TGGTGTTACTTGCTTTATGTTGTCT 59.174 36.000 0.00 0.00 0.00 3.41
5184 7595 6.067263 TGGTGTTACTTGCTTTATGTTGTC 57.933 37.500 0.00 0.00 0.00 3.18
5211 7624 5.597813 TTGAAATCTCGTTTCTGAAGCTC 57.402 39.130 2.80 0.00 45.22 4.09
5285 7878 3.780902 TGAAGTACCATCTATGCGTGTG 58.219 45.455 0.00 0.00 0.00 3.82
5290 7883 4.635765 TGTTTGCTGAAGTACCATCTATGC 59.364 41.667 0.00 0.00 0.00 3.14
5317 7910 3.338676 GCGCCGTACTATGCTGGC 61.339 66.667 0.00 0.00 44.09 4.85
5348 7942 5.981315 TGAAGAAAGTAGTAATAATCCGCCG 59.019 40.000 0.00 0.00 0.00 6.46
5398 7992 0.462047 AATGCTCCTTAAGTCGGCGG 60.462 55.000 7.21 0.00 0.00 6.13
5671 8265 8.239998 CCTTTCTGAAGTCATATTTTCCTGAAC 58.760 37.037 0.00 0.00 0.00 3.18
5681 8275 6.597280 GCTTTGTCTCCTTTCTGAAGTCATAT 59.403 38.462 0.00 0.00 0.00 1.78
5682 8276 5.934625 GCTTTGTCTCCTTTCTGAAGTCATA 59.065 40.000 0.00 0.00 0.00 2.15
5686 8280 4.133078 CTGCTTTGTCTCCTTTCTGAAGT 58.867 43.478 0.00 0.00 0.00 3.01
5693 8290 5.297569 ACTTCTACTGCTTTGTCTCCTTT 57.702 39.130 0.00 0.00 0.00 3.11
5714 8311 4.612943 TGCCTTGTTTCGGTGAAAAATAC 58.387 39.130 0.00 0.00 33.14 1.89
5770 8367 3.062042 GTTCGGTGTCGATTGGTAAGTT 58.938 45.455 0.00 0.00 45.51 2.66
5869 8471 2.626743 ACAACCTCTGCTACACGTTAGT 59.373 45.455 0.00 0.00 0.00 2.24
5872 8474 2.210116 CAACAACCTCTGCTACACGTT 58.790 47.619 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.