Multiple sequence alignment - TraesCS6D01G402800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G402800 chr6D 100.000 5399 0 0 1 5399 471014103 471019501 0.000000e+00 9971
1 TraesCS6D01G402800 chr6D 90.698 172 13 2 4961 5132 471018631 471018799 5.440000e-55 226
2 TraesCS6D01G402800 chr6D 90.698 172 13 2 4529 4697 471019063 471019234 5.440000e-55 226
3 TraesCS6D01G402800 chr6D 91.860 86 5 1 41 124 471009425 471009510 9.500000e-23 119
4 TraesCS6D01G402800 chr6D 95.312 64 3 0 436 499 471009545 471009608 9.570000e-18 102
5 TraesCS6D01G402800 chr6B 94.557 3417 152 17 1563 4965 719678053 719674657 0.000000e+00 5249
6 TraesCS6D01G402800 chr6B 82.672 756 57 44 809 1517 719678867 719678139 2.150000e-168 603
7 TraesCS6D01G402800 chr6B 88.494 478 34 10 41 499 719680430 719679955 4.720000e-155 558
8 TraesCS6D01G402800 chr6B 92.453 159 6 2 5198 5351 719674025 719673868 7.040000e-54 222
9 TraesCS6D01G402800 chr6B 90.173 173 13 3 4961 5132 719675095 719674926 7.040000e-54 222
10 TraesCS6D01G402800 chr6A 92.734 2601 126 16 2293 4837 615821433 615824026 0.000000e+00 3698
11 TraesCS6D01G402800 chr6A 89.153 378 35 4 2198 2572 121645326 121644952 2.940000e-127 466
12 TraesCS6D01G402800 chr6A 87.459 303 27 8 1992 2286 615821165 615821464 6.700000e-89 339
13 TraesCS6D01G402800 chr6A 82.493 337 17 18 1023 1350 615820166 615820469 1.930000e-64 257
14 TraesCS6D01G402800 chr6A 87.791 172 18 2 4961 5132 615823716 615823884 1.190000e-46 198
15 TraesCS6D01G402800 chr7D 89.062 384 36 4 2192 2572 227549258 227549638 6.330000e-129 472
16 TraesCS6D01G402800 chr7D 89.153 378 33 6 2198 2572 206133549 206133177 1.060000e-126 464
17 TraesCS6D01G402800 chr7D 84.553 246 30 5 2029 2271 596670307 596670067 2.510000e-58 237
18 TraesCS6D01G402800 chr4D 88.802 384 37 4 2192 2572 12092110 12092490 2.940000e-127 466
19 TraesCS6D01G402800 chr5A 88.281 384 39 4 2192 2572 308145972 308146352 6.370000e-124 455
20 TraesCS6D01G402800 chr3A 88.360 378 38 4 2198 2572 399607300 399606926 2.970000e-122 449
21 TraesCS6D01G402800 chr3A 88.298 376 38 4 2198 2570 403980807 403980435 3.840000e-121 446
22 TraesCS6D01G402800 chr3B 89.362 94 10 0 1155 1248 71203648 71203741 9.500000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G402800 chr6D 471014103 471019501 5398 False 3474.333333 9971 93.798667 1 5399 3 chr6D.!!$F2 5398
1 TraesCS6D01G402800 chr6B 719673868 719680430 6562 True 1370.800000 5249 89.669800 41 5351 5 chr6B.!!$R1 5310
2 TraesCS6D01G402800 chr6A 615820166 615824026 3860 False 1123.000000 3698 87.619250 1023 5132 4 chr6A.!!$F1 4109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1790 0.035439 TTCGACCCAATCCAAGGCTC 60.035 55.0 0.00 0.00 0.00 4.70 F
1633 2580 0.320073 TTGAATTTGCTGCTGCTGCC 60.320 50.0 25.44 12.24 40.48 4.85 F
2606 3630 0.034670 GACAGCTCAAGCCCTTCCAT 60.035 55.0 0.00 0.00 43.38 3.41 F
3802 4829 0.036875 CACCAGACCCTGTTCCCTTC 59.963 60.0 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 3612 0.034670 GATGGAAGGGCTTGAGCTGT 60.035 55.0 0.00 0.0 41.70 4.40 R
2776 3800 0.036294 GAGTGGTACTCTGTTGGGGC 60.036 60.0 1.86 0.0 41.88 5.80 R
4219 5246 0.519175 CAACCTTGCGAGCGAAATCG 60.519 55.0 0.00 0.0 45.48 3.34 R
5374 6874 0.038166 GGGGACATGTGATGTGGTGT 59.962 55.0 1.15 0.0 45.03 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.539034 AAAAGGTAGCAAATATTGGTCACTT 57.461 32.000 0.00 2.60 42.20 3.16
48 49 8.644374 AAAGGTAGCAAATATTGGTCACTTAA 57.356 30.769 0.00 0.00 42.20 1.85
56 57 9.034544 GCAAATATTGGTCACTTAATCCATTTC 57.965 33.333 0.00 0.00 0.00 2.17
75 78 9.308000 TCCATTTCTACAAATATTGGTCAACTT 57.692 29.630 0.00 0.00 30.51 2.66
94 97 1.581934 TCTCACCACACGCTCAAAAG 58.418 50.000 0.00 0.00 0.00 2.27
101 104 5.040635 CACCACACGCTCAAAAGTTTAATT 58.959 37.500 0.00 0.00 0.00 1.40
107 110 6.412653 ACACGCTCAAAAGTTTAATTTACACG 59.587 34.615 0.00 0.00 0.00 4.49
109 112 6.630045 ACGCTCAAAAGTTTAATTTACACGAC 59.370 34.615 0.00 0.00 0.00 4.34
132 135 5.163602 ACTCTTAAAACACGGAATTGCAACA 60.164 36.000 0.00 0.00 0.00 3.33
140 143 1.541147 CGGAATTGCAACACCATGACT 59.459 47.619 19.27 0.00 0.00 3.41
142 145 3.378112 CGGAATTGCAACACCATGACTAT 59.622 43.478 19.27 0.00 0.00 2.12
149 152 6.641169 TGCAACACCATGACTATTTAAACA 57.359 33.333 0.00 0.00 0.00 2.83
155 158 6.180472 CACCATGACTATTTAAACAGGGACT 58.820 40.000 12.53 0.00 43.88 3.85
169 172 3.165071 CAGGGACTAAATTTGCCCAAGT 58.835 45.455 20.83 8.78 43.20 3.16
178 181 5.523438 AAATTTGCCCAAGTCTTTTCGTA 57.477 34.783 0.00 0.00 0.00 3.43
197 201 8.610248 TTTCGTAGAAGGACAAATTTCATACA 57.390 30.769 0.00 0.00 45.90 2.29
207 211 3.673746 AATTTCATACACGACATGGCG 57.326 42.857 21.98 21.98 37.29 5.69
274 278 1.121407 CAGGCGACCATAGGGGATCA 61.121 60.000 0.00 0.00 41.15 2.92
281 285 1.768870 ACCATAGGGGATCAAACCTCG 59.231 52.381 0.00 0.92 41.15 4.63
316 320 1.750341 TTTGTCCCGAAGCTCCACGA 61.750 55.000 8.98 0.00 0.00 4.35
328 332 1.935327 CTCCACGACTCCGACCCTTC 61.935 65.000 0.00 0.00 39.50 3.46
441 460 5.162969 TGGTATTGGTAGGAGTTTCCCAAAA 60.163 40.000 0.00 0.00 40.16 2.44
449 468 2.557056 GGAGTTTCCCAAAAGTGGCTAC 59.443 50.000 0.00 0.00 44.46 3.58
474 493 1.297689 CCTCTGCTGCCTGCTACAA 59.702 57.895 0.00 0.00 43.37 2.41
492 511 4.537135 ACAATAAGGAAAGAGCGAGTGA 57.463 40.909 0.00 0.00 0.00 3.41
495 514 5.185249 ACAATAAGGAAAGAGCGAGTGAGTA 59.815 40.000 0.00 0.00 0.00 2.59
499 518 5.153950 AGGAAAGAGCGAGTGAGTAAAAT 57.846 39.130 0.00 0.00 0.00 1.82
500 519 5.172205 AGGAAAGAGCGAGTGAGTAAAATC 58.828 41.667 0.00 0.00 0.00 2.17
501 520 4.929808 GGAAAGAGCGAGTGAGTAAAATCA 59.070 41.667 0.00 0.00 0.00 2.57
504 523 7.439655 GGAAAGAGCGAGTGAGTAAAATCATAT 59.560 37.037 0.00 0.00 0.00 1.78
507 526 7.941919 AGAGCGAGTGAGTAAAATCATATGTA 58.058 34.615 1.90 0.00 0.00 2.29
555 633 7.324354 TCATGAGTTTTATGTGTGGATCATG 57.676 36.000 5.67 5.67 42.50 3.07
564 642 1.765314 GTGTGGATCATGTCTAGGGCT 59.235 52.381 0.00 0.00 0.00 5.19
565 643 1.764723 TGTGGATCATGTCTAGGGCTG 59.235 52.381 0.00 0.00 0.00 4.85
569 647 2.388890 ATCATGTCTAGGGCTGGCGC 62.389 60.000 0.00 0.00 0.00 6.53
570 648 4.227134 ATGTCTAGGGCTGGCGCG 62.227 66.667 0.00 0.00 36.88 6.86
572 650 3.917760 GTCTAGGGCTGGCGCGAT 61.918 66.667 12.10 0.00 36.88 4.58
573 651 3.916544 TCTAGGGCTGGCGCGATG 61.917 66.667 12.10 0.00 36.88 3.84
594 880 3.484742 GATCGACGCGATGGCTGGA 62.485 63.158 15.93 0.00 47.00 3.86
603 889 2.040043 ATGGCTGGAGGGAGGGAG 60.040 66.667 0.00 0.00 0.00 4.30
604 890 3.728305 ATGGCTGGAGGGAGGGAGG 62.728 68.421 0.00 0.00 0.00 4.30
613 899 3.081409 GGAGGGAGGGCGCTTGTA 61.081 66.667 7.64 0.00 37.44 2.41
614 900 2.187163 GAGGGAGGGCGCTTGTAC 59.813 66.667 7.64 0.00 37.44 2.90
615 901 3.387225 GAGGGAGGGCGCTTGTACC 62.387 68.421 7.64 1.78 37.44 3.34
642 1311 2.963371 GCCGGGCGACTATAGGAG 59.037 66.667 1.81 0.00 0.00 3.69
653 1325 3.442273 CGACTATAGGAGAGGGATCAAGC 59.558 52.174 4.43 0.00 0.00 4.01
656 1328 2.094100 TAGGAGAGGGATCAAGCCTG 57.906 55.000 0.00 0.00 0.00 4.85
678 1350 2.661537 CTGAAGCGTGTGACGGCA 60.662 61.111 0.00 0.00 42.82 5.69
689 1361 1.971167 TGACGGCATTGCTTGTCCC 60.971 57.895 22.68 8.38 34.73 4.46
705 1378 3.391382 CCGAGGCTCCGACCCTTT 61.391 66.667 9.32 0.00 31.41 3.11
725 1402 0.320697 GGTGCCTTCCGTTGTACTCT 59.679 55.000 0.00 0.00 0.00 3.24
726 1403 1.672145 GGTGCCTTCCGTTGTACTCTC 60.672 57.143 0.00 0.00 0.00 3.20
727 1404 1.272769 GTGCCTTCCGTTGTACTCTCT 59.727 52.381 0.00 0.00 0.00 3.10
728 1405 1.544691 TGCCTTCCGTTGTACTCTCTC 59.455 52.381 0.00 0.00 0.00 3.20
729 1406 1.135053 GCCTTCCGTTGTACTCTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
730 1407 1.132643 CCTTCCGTTGTACTCTCTCCG 59.867 57.143 0.00 0.00 0.00 4.63
731 1408 0.524862 TTCCGTTGTACTCTCTCCGC 59.475 55.000 0.00 0.00 0.00 5.54
732 1409 1.139095 CCGTTGTACTCTCTCCGCC 59.861 63.158 0.00 0.00 0.00 6.13
733 1410 1.139095 CGTTGTACTCTCTCCGCCC 59.861 63.158 0.00 0.00 0.00 6.13
734 1411 1.139095 GTTGTACTCTCTCCGCCCG 59.861 63.158 0.00 0.00 0.00 6.13
735 1412 2.050350 TTGTACTCTCTCCGCCCGG 61.050 63.158 0.00 0.00 0.00 5.73
736 1413 3.217743 GTACTCTCTCCGCCCGGG 61.218 72.222 19.09 19.09 35.59 5.73
737 1414 3.414193 TACTCTCTCCGCCCGGGA 61.414 66.667 29.31 1.13 44.68 5.14
738 1415 2.987596 TACTCTCTCCGCCCGGGAA 61.988 63.158 29.31 7.71 46.61 3.97
739 1416 2.294170 TACTCTCTCCGCCCGGGAAT 62.294 60.000 29.31 0.00 46.61 3.01
740 1417 3.154473 TCTCTCCGCCCGGGAATG 61.154 66.667 29.31 13.30 46.61 2.67
741 1418 4.918201 CTCTCCGCCCGGGAATGC 62.918 72.222 29.31 7.69 46.61 3.56
743 1420 4.489771 CTCCGCCCGGGAATGCTT 62.490 66.667 29.31 0.00 46.61 3.91
744 1421 4.794648 TCCGCCCGGGAATGCTTG 62.795 66.667 29.31 3.09 43.62 4.01
746 1423 3.508840 CGCCCGGGAATGCTTGTC 61.509 66.667 29.31 0.79 0.00 3.18
747 1424 3.508840 GCCCGGGAATGCTTGTCG 61.509 66.667 29.31 0.00 0.00 4.35
748 1425 2.824041 CCCGGGAATGCTTGTCGG 60.824 66.667 18.48 0.00 40.32 4.79
749 1426 2.046314 CCGGGAATGCTTGTCGGT 60.046 61.111 0.00 0.00 36.38 4.69
750 1427 2.398554 CCGGGAATGCTTGTCGGTG 61.399 63.158 0.00 0.00 36.38 4.94
751 1428 1.671054 CGGGAATGCTTGTCGGTGT 60.671 57.895 0.00 0.00 0.00 4.16
759 1436 1.202758 TGCTTGTCGGTGTCCATTTCT 60.203 47.619 0.00 0.00 0.00 2.52
760 1437 1.880027 GCTTGTCGGTGTCCATTTCTT 59.120 47.619 0.00 0.00 0.00 2.52
761 1438 2.095718 GCTTGTCGGTGTCCATTTCTTC 60.096 50.000 0.00 0.00 0.00 2.87
768 1445 2.095718 GGTGTCCATTTCTTCGACAAGC 60.096 50.000 0.00 0.00 38.20 4.01
769 1446 2.548057 GTGTCCATTTCTTCGACAAGCA 59.452 45.455 0.00 0.00 38.20 3.91
773 1450 4.853743 GTCCATTTCTTCGACAAGCATTTC 59.146 41.667 0.00 0.00 0.00 2.17
774 1451 3.848019 CCATTTCTTCGACAAGCATTTCG 59.152 43.478 0.00 0.00 36.55 3.46
793 1492 0.677098 GGGACGGAGGGAAAAGAAGC 60.677 60.000 0.00 0.00 0.00 3.86
799 1498 2.174360 GGAGGGAAAAGAAGCTTGCAT 58.826 47.619 2.10 0.00 0.00 3.96
802 1501 4.503817 GGAGGGAAAAGAAGCTTGCATTTT 60.504 41.667 2.10 8.48 0.00 1.82
803 1502 5.039920 AGGGAAAAGAAGCTTGCATTTTT 57.960 34.783 2.10 5.53 0.00 1.94
804 1503 6.173427 AGGGAAAAGAAGCTTGCATTTTTA 57.827 33.333 2.10 0.00 0.00 1.52
824 1649 0.802494 GCATTTGTAGGGGTGACGTG 59.198 55.000 0.00 0.00 0.00 4.49
831 1656 1.188871 TAGGGGTGACGTGACATGCA 61.189 55.000 7.63 0.00 0.00 3.96
850 1681 2.289569 GCAAAAGAAATGGTGATGCCCA 60.290 45.455 0.00 0.00 39.27 5.36
874 1706 1.603455 GGCAGTGCCTTTGCTACCA 60.603 57.895 27.48 0.00 46.69 3.25
881 1713 2.401766 CCTTTGCTACCAGCTGCGG 61.402 63.158 8.66 0.00 42.97 5.69
899 1731 2.125512 CGCGGAAAGAGAGGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
900 1732 2.646175 CGCGGAAAGAGAGGGGTGA 61.646 63.158 0.00 0.00 0.00 4.02
901 1733 1.219393 GCGGAAAGAGAGGGGTGAG 59.781 63.158 0.00 0.00 0.00 3.51
902 1734 1.545706 GCGGAAAGAGAGGGGTGAGT 61.546 60.000 0.00 0.00 0.00 3.41
903 1735 0.247736 CGGAAAGAGAGGGGTGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
904 1736 1.645710 GGAAAGAGAGGGGTGAGTGA 58.354 55.000 0.00 0.00 0.00 3.41
905 1737 1.552792 GGAAAGAGAGGGGTGAGTGAG 59.447 57.143 0.00 0.00 0.00 3.51
906 1738 2.252714 GAAAGAGAGGGGTGAGTGAGT 58.747 52.381 0.00 0.00 0.00 3.41
907 1739 1.638529 AAGAGAGGGGTGAGTGAGTG 58.361 55.000 0.00 0.00 0.00 3.51
908 1740 0.780637 AGAGAGGGGTGAGTGAGTGA 59.219 55.000 0.00 0.00 0.00 3.41
909 1741 1.181786 GAGAGGGGTGAGTGAGTGAG 58.818 60.000 0.00 0.00 0.00 3.51
910 1742 0.485099 AGAGGGGTGAGTGAGTGAGT 59.515 55.000 0.00 0.00 0.00 3.41
911 1743 0.605589 GAGGGGTGAGTGAGTGAGTG 59.394 60.000 0.00 0.00 0.00 3.51
925 1757 3.088532 AGTGAGTGAGTCAGTCAGATCC 58.911 50.000 27.37 16.96 43.32 3.36
929 1761 1.754226 GTGAGTCAGTCAGATCCTCCC 59.246 57.143 0.00 0.00 35.13 4.30
952 1784 0.616371 ATTCGGTTCGACCCAATCCA 59.384 50.000 0.00 0.00 34.89 3.41
954 1786 0.036765 TCGGTTCGACCCAATCCAAG 60.037 55.000 0.00 0.00 33.75 3.61
955 1787 1.024579 CGGTTCGACCCAATCCAAGG 61.025 60.000 0.00 0.00 33.75 3.61
957 1789 0.322546 GTTCGACCCAATCCAAGGCT 60.323 55.000 0.00 0.00 0.00 4.58
958 1790 0.035439 TTCGACCCAATCCAAGGCTC 60.035 55.000 0.00 0.00 0.00 4.70
959 1791 1.452108 CGACCCAATCCAAGGCTCC 60.452 63.158 0.00 0.00 0.00 4.70
960 1792 1.452108 GACCCAATCCAAGGCTCCG 60.452 63.158 0.00 0.00 0.00 4.63
962 1794 0.912487 ACCCAATCCAAGGCTCCGTA 60.912 55.000 0.00 0.00 0.00 4.02
963 1795 0.474184 CCCAATCCAAGGCTCCGTAT 59.526 55.000 0.00 0.00 0.00 3.06
964 1796 1.543429 CCCAATCCAAGGCTCCGTATC 60.543 57.143 0.00 0.00 0.00 2.24
965 1797 1.140852 CCAATCCAAGGCTCCGTATCA 59.859 52.381 0.00 0.00 0.00 2.15
966 1798 2.487934 CAATCCAAGGCTCCGTATCAG 58.512 52.381 0.00 0.00 0.00 2.90
970 1809 1.202463 CCAAGGCTCCGTATCAGTCAG 60.202 57.143 0.00 0.00 0.00 3.51
1005 1844 3.117171 CGCACAGACAGCCAGAGC 61.117 66.667 0.00 0.00 40.32 4.09
1006 1845 2.745492 GCACAGACAGCCAGAGCC 60.745 66.667 0.00 0.00 41.25 4.70
1007 1846 2.745698 CACAGACAGCCAGAGCCA 59.254 61.111 0.00 0.00 41.25 4.75
1009 1848 1.840650 ACAGACAGCCAGAGCCAGT 60.841 57.895 0.00 0.00 41.25 4.00
1011 1850 1.534959 AGACAGCCAGAGCCAGTGA 60.535 57.895 0.00 0.00 41.25 3.41
1012 1851 1.079266 GACAGCCAGAGCCAGTGAG 60.079 63.158 0.00 0.00 41.25 3.51
1028 1867 0.397941 TGAGCTCTCACCTTGGTTGG 59.602 55.000 16.19 0.00 34.14 3.77
1068 1912 2.203998 CCAGGTCCAGGTCCAGGT 60.204 66.667 5.43 0.00 0.00 4.00
1070 1914 2.122954 AGGTCCAGGTCCAGGTCC 59.877 66.667 8.34 8.34 34.97 4.46
1071 1915 2.203938 GGTCCAGGTCCAGGTCCA 60.204 66.667 11.09 0.00 34.89 4.02
1072 1916 2.294078 GGTCCAGGTCCAGGTCCAG 61.294 68.421 11.09 0.00 34.89 3.86
1073 1917 2.122729 TCCAGGTCCAGGTCCAGG 59.877 66.667 7.77 7.77 33.67 4.45
1074 1918 2.203998 CCAGGTCCAGGTCCAGGT 60.204 66.667 5.43 0.00 0.00 4.00
1076 1920 2.122954 AGGTCCAGGTCCAGGTCC 59.877 66.667 8.34 8.34 34.97 4.46
1077 1921 2.203938 GGTCCAGGTCCAGGTCCA 60.204 66.667 11.09 0.00 34.89 4.02
1081 1925 2.378634 CCAGGTCCAGGTCCATCCC 61.379 68.421 5.43 0.00 36.75 3.85
1082 1926 1.307343 CAGGTCCAGGTCCATCCCT 60.307 63.158 5.43 0.00 36.75 4.20
1083 1927 1.003573 AGGTCCAGGTCCATCCCTC 59.996 63.158 5.43 0.00 36.75 4.30
1084 1928 1.003573 GGTCCAGGTCCATCCCTCT 59.996 63.158 0.00 0.00 36.75 3.69
1085 1929 1.341156 GGTCCAGGTCCATCCCTCTG 61.341 65.000 0.00 0.00 36.75 3.35
1100 1944 2.125350 CTGCTTCTGCCCTCGACC 60.125 66.667 0.00 0.00 38.71 4.79
1379 2248 2.731374 GATTCGGCCTCTCTCCCG 59.269 66.667 0.00 0.00 45.64 5.14
1386 2255 2.600731 CCTCTCTCCCGGAGCTCT 59.399 66.667 14.64 0.00 41.60 4.09
1486 2373 2.193248 CGCCCCCTCCAAGATTCC 59.807 66.667 0.00 0.00 0.00 3.01
1488 2375 1.228510 GCCCCCTCCAAGATTCCAG 59.771 63.158 0.00 0.00 0.00 3.86
1492 2379 1.211456 CCCTCCAAGATTCCAGCTCT 58.789 55.000 0.00 0.00 0.00 4.09
1554 2457 2.561373 GTTTTGGCTTCCGGCGAG 59.439 61.111 9.30 0.00 42.94 5.03
1593 2540 3.120304 GCCGAGATCTGTTGGTTTAACAC 60.120 47.826 0.00 0.00 44.07 3.32
1594 2541 3.122948 CCGAGATCTGTTGGTTTAACACG 59.877 47.826 0.00 0.00 44.07 4.49
1604 2551 4.002906 TGGTTTAACACGAGCTGATTCT 57.997 40.909 0.00 0.00 0.00 2.40
1621 2568 2.978156 TCTGTCAGCCCCTTGAATTT 57.022 45.000 0.00 0.00 0.00 1.82
1633 2580 0.320073 TTGAATTTGCTGCTGCTGCC 60.320 50.000 25.44 12.24 40.48 4.85
1634 2581 1.804326 GAATTTGCTGCTGCTGCCG 60.804 57.895 25.44 7.92 40.48 5.69
1640 2587 2.825387 CTGCTGCTGCCGCCAATA 60.825 61.111 13.49 0.00 38.71 1.90
1641 2588 2.825387 TGCTGCTGCCGCCAATAG 60.825 61.111 13.49 0.00 38.71 1.73
1642 2589 2.825836 GCTGCTGCCGCCAATAGT 60.826 61.111 4.57 0.00 34.43 2.12
1659 2606 6.436261 CCAATAGTTGATTGATGCATCAGAC 58.564 40.000 27.25 23.44 46.94 3.51
1703 2690 0.984230 CCCTGCTCCACCAAACTAGA 59.016 55.000 0.00 0.00 0.00 2.43
1815 2806 2.656560 ATCACCAACAGACTAGTCGC 57.343 50.000 17.07 0.00 34.09 5.19
1823 2814 1.813786 ACAGACTAGTCGCTTCTCCAC 59.186 52.381 17.07 0.00 34.09 4.02
1829 2824 4.080687 ACTAGTCGCTTCTCCACTTTACT 58.919 43.478 0.00 0.00 0.00 2.24
1838 2833 3.135994 TCTCCACTTTACTTTTCGCACC 58.864 45.455 0.00 0.00 0.00 5.01
1848 2843 2.275318 CTTTTCGCACCTCTCCATCTC 58.725 52.381 0.00 0.00 0.00 2.75
1877 2876 2.433868 TCCGTTTATAGCTCGCATCC 57.566 50.000 0.00 0.00 0.00 3.51
1894 2893 3.181483 GCATCCTGCTCAAATTTTCCGAT 60.181 43.478 0.00 0.00 40.96 4.18
2000 3004 0.804989 AAGCATTGAGTAGCAACGCC 59.195 50.000 0.00 0.00 46.25 5.68
2022 3026 2.035066 GTGAACTGAAATGCCTTGCTGT 59.965 45.455 0.00 0.00 0.00 4.40
2135 3144 4.293415 CTGCTGACATGTTGTTTTTCCTC 58.707 43.478 0.00 0.00 0.00 3.71
2136 3145 3.698539 TGCTGACATGTTGTTTTTCCTCA 59.301 39.130 0.00 0.00 0.00 3.86
2139 3148 6.040278 TGCTGACATGTTGTTTTTCCTCAATA 59.960 34.615 0.00 0.00 0.00 1.90
2145 3154 5.450453 TGTTGTTTTTCCTCAATACAGGGA 58.550 37.500 0.00 0.00 33.81 4.20
2321 3335 4.962155 TCCTCTGTTCTCTTTTTCACTCC 58.038 43.478 0.00 0.00 0.00 3.85
2384 3398 9.667107 TTAAACAGAGCAACATAGTAAGCTATT 57.333 29.630 0.00 0.00 37.48 1.73
2417 3431 4.574599 AATTGACTTGTTCTTGTGGCTC 57.425 40.909 0.00 0.00 0.00 4.70
2444 3458 4.036734 ACAGTTGCTCTACACAAAACCATG 59.963 41.667 0.00 0.00 0.00 3.66
2445 3459 3.004734 AGTTGCTCTACACAAAACCATGC 59.995 43.478 0.00 0.00 0.00 4.06
2468 3483 4.127171 CACCCATTTACTCGAATACCTGG 58.873 47.826 0.00 0.00 0.00 4.45
2474 3489 0.978146 ACTCGAATACCTGGGCAGCT 60.978 55.000 0.00 0.00 0.00 4.24
2478 3493 0.750850 GAATACCTGGGCAGCTACGA 59.249 55.000 0.00 0.00 0.00 3.43
2479 3494 0.464452 AATACCTGGGCAGCTACGAC 59.536 55.000 0.00 0.00 0.00 4.34
2493 3512 7.365741 GGCAGCTACGACTACAGTAATTAATA 58.634 38.462 0.00 0.00 0.00 0.98
2494 3513 7.864379 GGCAGCTACGACTACAGTAATTAATAA 59.136 37.037 0.00 0.00 0.00 1.40
2495 3514 9.408069 GCAGCTACGACTACAGTAATTAATAAT 57.592 33.333 0.00 0.00 0.00 1.28
2524 3548 0.951558 TTTCTTTTCAGCCGCTGGAC 59.048 50.000 20.23 0.00 31.51 4.02
2606 3630 0.034670 GACAGCTCAAGCCCTTCCAT 60.035 55.000 0.00 0.00 43.38 3.41
2689 3713 2.107204 AGGAAACCTGTGCACATTCTCT 59.893 45.455 22.00 16.00 29.57 3.10
2734 3758 3.351609 TGCTTTGCAGCCTCATCTT 57.648 47.368 0.00 0.00 46.74 2.40
2800 3824 0.542232 AACAGAGTACCACTCCCGCT 60.542 55.000 2.74 0.00 46.18 5.52
2929 3953 1.839424 ACCCTTATGTGCTTTCTGGC 58.161 50.000 0.00 0.00 0.00 4.85
2956 3980 1.811679 GAGTTACCAGCCTCAGCGC 60.812 63.158 0.00 0.00 46.67 5.92
2963 3987 4.443266 AGCCTCAGCGCTCGGTTC 62.443 66.667 20.12 7.67 46.67 3.62
2977 4001 1.294659 CGGTTCAAGCTGAGTCTGCC 61.295 60.000 17.44 2.92 0.00 4.85
3086 4110 1.301401 TCGTTCAAGGAAGGCCACG 60.301 57.895 5.01 3.08 36.29 4.94
3106 4130 0.248784 CTAGTAGTTACCGGCGTGCC 60.249 60.000 6.01 0.00 0.00 5.01
3109 4133 2.277591 TAGTTACCGGCGTGCCAGT 61.278 57.895 12.06 8.42 35.37 4.00
3128 4152 2.224159 GGGGAGCAGAACAGTGGGA 61.224 63.158 0.00 0.00 0.00 4.37
3130 4154 1.204146 GGGAGCAGAACAGTGGGATA 58.796 55.000 0.00 0.00 0.00 2.59
3133 4157 1.476891 GAGCAGAACAGTGGGATACGA 59.523 52.381 0.00 0.00 37.60 3.43
3216 4240 3.445008 TGGTGTCAGAGAGAAGGCTTAT 58.555 45.455 0.00 0.00 0.00 1.73
3238 4262 1.102154 AGAGAGAGTCGATGCCTGTG 58.898 55.000 0.00 0.00 0.00 3.66
3354 4381 1.527433 TATCCTGAGGATGAGCGCGG 61.527 60.000 23.88 0.00 43.06 6.46
3367 4394 2.976350 CGCGGCAGCCATCATCAT 60.976 61.111 13.30 0.00 41.18 2.45
3376 4403 0.668706 GCCATCATCATCGTCGAGGG 60.669 60.000 7.10 0.00 33.77 4.30
3446 4473 2.421529 CGGATAAAACTTCCAGGGGAGG 60.422 54.545 0.00 0.00 34.79 4.30
3802 4829 0.036875 CACCAGACCCTGTTCCCTTC 59.963 60.000 0.00 0.00 0.00 3.46
3896 4923 0.954452 GGAAGAACAGGTTGCAGGTG 59.046 55.000 0.00 0.00 0.00 4.00
3929 4956 3.375299 GTCCCTGAACAATTCCAGAATCG 59.625 47.826 0.00 0.00 32.37 3.34
3934 4961 3.926527 TGAACAATTCCAGAATCGTCGAG 59.073 43.478 0.00 0.00 0.00 4.04
3937 4964 4.759782 ACAATTCCAGAATCGTCGAGAAT 58.240 39.130 0.00 1.03 34.02 2.40
3954 4981 4.545610 GAGAATGATAGAGTCGAGGCAAG 58.454 47.826 0.00 0.00 0.00 4.01
3964 4991 2.347490 GAGGCAAGCACCGAGGAA 59.653 61.111 0.00 0.00 33.69 3.36
3966 4993 0.889186 GAGGCAAGCACCGAGGAAAA 60.889 55.000 0.00 0.00 33.69 2.29
3972 4999 2.554032 CAAGCACCGAGGAAAATGAAGT 59.446 45.455 0.00 0.00 0.00 3.01
4168 5195 1.375396 CGACACAAATGCCGAGGGA 60.375 57.895 0.00 0.00 0.00 4.20
4219 5246 1.002251 GATGATCTGGAGGACGACGAC 60.002 57.143 0.00 0.00 0.00 4.34
4436 5486 2.276740 CTCATGGGGAGTTGGGGC 59.723 66.667 0.00 0.00 38.90 5.80
4594 5667 4.225042 TCAGTGCATAAGATGGTTACAGGT 59.775 41.667 0.00 0.00 0.00 4.00
4668 5741 3.058708 CACCTGGCTGCGATATTTGTATG 60.059 47.826 0.00 0.00 0.00 2.39
4701 5774 7.810282 TGTTTTCTCGAAAAATGTTTGTCAAGA 59.190 29.630 6.41 0.00 41.37 3.02
4760 5835 0.253327 CAACTCCTCCTTACCCCTGC 59.747 60.000 0.00 0.00 0.00 4.85
4840 5915 5.357032 CAGTGGAGGAGTTTTTACTTTGTGT 59.643 40.000 0.00 0.00 0.00 3.72
4925 6001 1.761174 GTCCTGGGCAGAGGAACAA 59.239 57.895 6.10 0.00 44.04 2.83
4926 6002 0.110486 GTCCTGGGCAGAGGAACAAA 59.890 55.000 6.10 0.00 44.04 2.83
4976 6052 9.793252 ATATTTTGCTATGAACAAACAGATCAC 57.207 29.630 0.00 0.00 36.77 3.06
4977 6053 6.631971 TTTGCTATGAACAAACAGATCACA 57.368 33.333 0.00 0.00 31.34 3.58
4978 6054 5.611796 TGCTATGAACAAACAGATCACAC 57.388 39.130 0.00 0.00 31.34 3.82
4982 6058 6.525628 GCTATGAACAAACAGATCACACATTG 59.474 38.462 0.00 0.00 31.34 2.82
4983 6059 5.833406 TGAACAAACAGATCACACATTGT 57.167 34.783 0.00 0.00 32.78 2.71
4984 6060 6.934048 TGAACAAACAGATCACACATTGTA 57.066 33.333 0.00 0.00 31.33 2.41
4986 6062 5.689383 ACAAACAGATCACACATTGTACC 57.311 39.130 0.00 0.00 29.89 3.34
4987 6063 5.129634 ACAAACAGATCACACATTGTACCA 58.870 37.500 0.00 0.00 29.89 3.25
4988 6064 5.008613 ACAAACAGATCACACATTGTACCAC 59.991 40.000 0.00 0.00 29.89 4.16
4990 6066 5.738619 ACAGATCACACATTGTACCACTA 57.261 39.130 0.00 0.00 0.00 2.74
4992 6068 6.711277 ACAGATCACACATTGTACCACTATT 58.289 36.000 0.00 0.00 0.00 1.73
4993 6069 7.168219 ACAGATCACACATTGTACCACTATTT 58.832 34.615 0.00 0.00 0.00 1.40
4994 6070 7.665559 ACAGATCACACATTGTACCACTATTTT 59.334 33.333 0.00 0.00 0.00 1.82
4995 6071 7.964559 CAGATCACACATTGTACCACTATTTTG 59.035 37.037 0.00 0.00 0.00 2.44
4997 6073 8.856153 ATCACACATTGTACCACTATTTTGTA 57.144 30.769 0.00 0.00 0.00 2.41
4998 6074 8.856153 TCACACATTGTACCACTATTTTGTAT 57.144 30.769 0.00 0.00 0.00 2.29
5009 6085 7.593825 ACCACTATTTTGTATTTCTTCAGTGC 58.406 34.615 0.00 0.00 31.68 4.40
5011 6087 8.246180 CCACTATTTTGTATTTCTTCAGTGCAT 58.754 33.333 0.00 0.00 31.68 3.96
5017 6093 9.844790 TTTTGTATTTCTTCAGTGCATAAGATG 57.155 29.630 9.17 2.48 32.05 2.90
5018 6094 8.791327 TTGTATTTCTTCAGTGCATAAGATGA 57.209 30.769 9.17 4.42 32.05 2.92
5019 6095 8.969260 TGTATTTCTTCAGTGCATAAGATGAT 57.031 30.769 9.17 9.08 32.05 2.45
5020 6096 8.833493 TGTATTTCTTCAGTGCATAAGATGATG 58.167 33.333 9.17 3.78 32.05 3.07
5022 6098 8.693120 ATTTCTTCAGTGCATAAGATGATGAT 57.307 30.769 9.17 3.07 32.05 2.45
5023 6099 7.725818 TTCTTCAGTGCATAAGATGATGATC 57.274 36.000 9.17 0.00 32.05 2.92
5024 6100 6.823497 TCTTCAGTGCATAAGATGATGATCA 58.177 36.000 0.00 0.00 0.00 2.92
5025 6101 6.704937 TCTTCAGTGCATAAGATGATGATCAC 59.295 38.462 0.00 0.00 0.00 3.06
5026 6102 5.920903 TCAGTGCATAAGATGATGATCACA 58.079 37.500 0.00 0.00 0.00 3.58
5027 6103 5.989777 TCAGTGCATAAGATGATGATCACAG 59.010 40.000 0.00 0.00 0.00 3.66
5028 6104 5.179555 CAGTGCATAAGATGATGATCACAGG 59.820 44.000 0.00 0.00 0.00 4.00
5029 6105 5.061853 GTGCATAAGATGATGATCACAGGT 58.938 41.667 0.00 0.00 0.00 4.00
5030 6106 5.178996 GTGCATAAGATGATGATCACAGGTC 59.821 44.000 0.00 0.00 0.00 3.85
5031 6107 5.163280 TGCATAAGATGATGATCACAGGTCA 60.163 40.000 0.00 0.00 0.00 4.02
5032 6108 5.761726 GCATAAGATGATGATCACAGGTCAA 59.238 40.000 0.00 0.00 0.00 3.18
5033 6109 6.430308 GCATAAGATGATGATCACAGGTCAAT 59.570 38.462 0.00 0.00 0.00 2.57
5034 6110 7.040617 GCATAAGATGATGATCACAGGTCAATT 60.041 37.037 0.00 0.84 0.00 2.32
5035 6111 6.939132 AAGATGATGATCACAGGTCAATTC 57.061 37.500 0.00 0.00 0.00 2.17
5036 6112 5.997843 AGATGATGATCACAGGTCAATTCA 58.002 37.500 0.00 0.00 0.00 2.57
5037 6113 6.420638 AGATGATGATCACAGGTCAATTCAA 58.579 36.000 0.00 0.00 0.00 2.69
5038 6114 7.061054 AGATGATGATCACAGGTCAATTCAAT 58.939 34.615 0.00 0.00 0.00 2.57
5039 6115 7.560262 AGATGATGATCACAGGTCAATTCAATT 59.440 33.333 0.00 0.00 0.00 2.32
5040 6116 7.092137 TGATGATCACAGGTCAATTCAATTC 57.908 36.000 0.00 0.00 0.00 2.17
5041 6117 6.888088 TGATGATCACAGGTCAATTCAATTCT 59.112 34.615 0.00 0.00 0.00 2.40
5042 6118 8.048514 TGATGATCACAGGTCAATTCAATTCTA 58.951 33.333 0.00 0.00 0.00 2.10
5043 6119 8.991783 ATGATCACAGGTCAATTCAATTCTAT 57.008 30.769 0.00 0.00 0.00 1.98
5074 6150 9.693739 TTGTTATGGTAGAACATACATTTCCAT 57.306 29.630 0.00 0.00 36.71 3.41
5075 6151 9.693739 TGTTATGGTAGAACATACATTTCCATT 57.306 29.630 0.00 0.00 36.17 3.16
5076 6152 9.950680 GTTATGGTAGAACATACATTTCCATTG 57.049 33.333 0.00 0.00 36.17 2.82
5077 6153 6.449635 TGGTAGAACATACATTTCCATTGC 57.550 37.500 0.00 0.00 0.00 3.56
5079 6155 5.594317 GGTAGAACATACATTTCCATTGCCT 59.406 40.000 0.00 0.00 0.00 4.75
5080 6156 5.841957 AGAACATACATTTCCATTGCCTC 57.158 39.130 0.00 0.00 0.00 4.70
5081 6157 4.646492 AGAACATACATTTCCATTGCCTCC 59.354 41.667 0.00 0.00 0.00 4.30
5082 6158 2.951642 ACATACATTTCCATTGCCTCCG 59.048 45.455 0.00 0.00 0.00 4.63
5083 6159 2.799126 TACATTTCCATTGCCTCCGT 57.201 45.000 0.00 0.00 0.00 4.69
5085 6161 2.247358 ACATTTCCATTGCCTCCGTTT 58.753 42.857 0.00 0.00 0.00 3.60
5087 6163 0.965439 TTTCCATTGCCTCCGTTTGG 59.035 50.000 0.00 0.00 0.00 3.28
5106 6598 7.361371 CCGTTTGGCTACAGTATTTGTATTTCA 60.361 37.037 0.00 0.00 41.30 2.69
5162 6657 2.501723 TCTGGTCATCCTAAGTTGAGGC 59.498 50.000 0.00 0.00 36.45 4.70
5180 6675 9.077885 AGTTGAGGCTGTATGAAATTAAAAGAA 57.922 29.630 0.00 0.00 0.00 2.52
5181 6676 9.129209 GTTGAGGCTGTATGAAATTAAAAGAAC 57.871 33.333 0.00 0.00 0.00 3.01
5182 6677 8.402798 TGAGGCTGTATGAAATTAAAAGAACA 57.597 30.769 0.00 0.00 0.00 3.18
5183 6678 9.023962 TGAGGCTGTATGAAATTAAAAGAACAT 57.976 29.630 0.00 0.00 0.00 2.71
5184 6679 9.860898 GAGGCTGTATGAAATTAAAAGAACATT 57.139 29.630 0.00 0.00 0.00 2.71
5198 6693 9.748708 TTAAAAGAACATTTCAATCTGAACCAG 57.251 29.630 0.00 0.00 35.89 4.00
5199 6694 7.587037 AAAGAACATTTCAATCTGAACCAGA 57.413 32.000 0.00 0.00 44.99 3.86
5227 6722 6.980397 CCATATTTTTCTAGGAAACATGGCAC 59.020 38.462 17.63 0.00 30.65 5.01
5304 6799 2.398588 TGATGAGTATGTCTGTCCCCC 58.601 52.381 0.00 0.00 0.00 5.40
5340 6840 2.838736 ACATTGTGTGTGACTCTCCAC 58.161 47.619 0.00 0.00 40.28 4.02
5351 6851 4.526650 TGTGACTCTCCACAGCTTATACAA 59.473 41.667 0.00 0.00 41.63 2.41
5352 6852 5.011635 TGTGACTCTCCACAGCTTATACAAA 59.988 40.000 0.00 0.00 41.63 2.83
5353 6853 5.348997 GTGACTCTCCACAGCTTATACAAAC 59.651 44.000 0.00 0.00 37.04 2.93
5354 6854 5.011635 TGACTCTCCACAGCTTATACAAACA 59.988 40.000 0.00 0.00 0.00 2.83
5355 6855 6.054860 ACTCTCCACAGCTTATACAAACAT 57.945 37.500 0.00 0.00 0.00 2.71
5356 6856 6.109359 ACTCTCCACAGCTTATACAAACATC 58.891 40.000 0.00 0.00 0.00 3.06
5357 6857 6.048732 TCTCCACAGCTTATACAAACATCA 57.951 37.500 0.00 0.00 0.00 3.07
5358 6858 5.874810 TCTCCACAGCTTATACAAACATCAC 59.125 40.000 0.00 0.00 0.00 3.06
5359 6859 4.629634 TCCACAGCTTATACAAACATCACG 59.370 41.667 0.00 0.00 0.00 4.35
5360 6860 4.201812 CCACAGCTTATACAAACATCACGG 60.202 45.833 0.00 0.00 0.00 4.94
5361 6861 4.391830 CACAGCTTATACAAACATCACGGT 59.608 41.667 0.00 0.00 0.00 4.83
5362 6862 4.630069 ACAGCTTATACAAACATCACGGTC 59.370 41.667 0.00 0.00 0.00 4.79
5363 6863 4.629634 CAGCTTATACAAACATCACGGTCA 59.370 41.667 0.00 0.00 0.00 4.02
5364 6864 5.294306 CAGCTTATACAAACATCACGGTCAT 59.706 40.000 0.00 0.00 0.00 3.06
5365 6865 6.478673 CAGCTTATACAAACATCACGGTCATA 59.521 38.462 0.00 0.00 0.00 2.15
5366 6866 7.011016 CAGCTTATACAAACATCACGGTCATAA 59.989 37.037 0.00 0.00 0.00 1.90
5367 6867 7.715249 AGCTTATACAAACATCACGGTCATAAT 59.285 33.333 0.00 0.00 0.00 1.28
5368 6868 8.984764 GCTTATACAAACATCACGGTCATAATA 58.015 33.333 0.00 0.00 0.00 0.98
5371 6871 8.725405 ATACAAACATCACGGTCATAATAACA 57.275 30.769 0.00 0.00 0.00 2.41
5372 6872 6.837992 ACAAACATCACGGTCATAATAACAC 58.162 36.000 0.00 0.00 0.00 3.32
5373 6873 6.128117 ACAAACATCACGGTCATAATAACACC 60.128 38.462 0.00 0.00 0.00 4.16
5374 6874 5.092554 ACATCACGGTCATAATAACACCA 57.907 39.130 0.00 0.00 0.00 4.17
5375 6875 4.873827 ACATCACGGTCATAATAACACCAC 59.126 41.667 0.00 0.00 0.00 4.16
5376 6876 4.538746 TCACGGTCATAATAACACCACA 57.461 40.909 0.00 0.00 0.00 4.17
5377 6877 4.247258 TCACGGTCATAATAACACCACAC 58.753 43.478 0.00 0.00 0.00 3.82
5378 6878 3.372822 CACGGTCATAATAACACCACACC 59.627 47.826 0.00 0.00 0.00 4.16
5379 6879 3.008157 ACGGTCATAATAACACCACACCA 59.992 43.478 0.00 0.00 0.00 4.17
5380 6880 3.372822 CGGTCATAATAACACCACACCAC 59.627 47.826 0.00 0.00 0.00 4.16
5381 6881 4.328536 GGTCATAATAACACCACACCACA 58.671 43.478 0.00 0.00 0.00 4.17
5382 6882 4.947388 GGTCATAATAACACCACACCACAT 59.053 41.667 0.00 0.00 0.00 3.21
5383 6883 5.065988 GGTCATAATAACACCACACCACATC 59.934 44.000 0.00 0.00 0.00 3.06
5384 6884 5.645929 GTCATAATAACACCACACCACATCA 59.354 40.000 0.00 0.00 0.00 3.07
5385 6885 5.645929 TCATAATAACACCACACCACATCAC 59.354 40.000 0.00 0.00 0.00 3.06
5386 6886 3.500448 ATAACACCACACCACATCACA 57.500 42.857 0.00 0.00 0.00 3.58
5387 6887 2.363306 AACACCACACCACATCACAT 57.637 45.000 0.00 0.00 0.00 3.21
5388 6888 1.608055 ACACCACACCACATCACATG 58.392 50.000 0.00 0.00 0.00 3.21
5389 6889 1.133823 ACACCACACCACATCACATGT 60.134 47.619 0.00 0.00 46.22 3.21
5390 6890 1.536766 CACCACACCACATCACATGTC 59.463 52.381 0.00 0.00 42.70 3.06
5391 6891 1.167851 CCACACCACATCACATGTCC 58.832 55.000 0.00 0.00 42.70 4.02
5392 6892 1.167851 CACACCACATCACATGTCCC 58.832 55.000 0.00 0.00 42.70 4.46
5393 6893 0.038166 ACACCACATCACATGTCCCC 59.962 55.000 0.00 0.00 42.70 4.81
5394 6894 0.680921 CACCACATCACATGTCCCCC 60.681 60.000 0.00 0.00 42.70 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 7.539034 AGTGACCAATATTTGCTACCTTTTT 57.461 32.000 0.00 0.00 0.00 1.94
22 23 7.539034 AAGTGACCAATATTTGCTACCTTTT 57.461 32.000 0.00 0.00 0.00 2.27
23 24 8.644374 TTAAGTGACCAATATTTGCTACCTTT 57.356 30.769 0.00 0.00 0.00 3.11
24 25 8.823220 ATTAAGTGACCAATATTTGCTACCTT 57.177 30.769 0.00 0.00 0.00 3.50
25 26 7.502561 GGATTAAGTGACCAATATTTGCTACCT 59.497 37.037 0.00 0.00 0.00 3.08
26 27 7.284489 TGGATTAAGTGACCAATATTTGCTACC 59.716 37.037 0.00 0.00 0.00 3.18
27 28 8.220755 TGGATTAAGTGACCAATATTTGCTAC 57.779 34.615 0.00 0.00 0.00 3.58
28 29 8.995027 ATGGATTAAGTGACCAATATTTGCTA 57.005 30.769 0.00 0.00 37.24 3.49
29 30 7.902920 ATGGATTAAGTGACCAATATTTGCT 57.097 32.000 0.00 0.00 37.24 3.91
30 31 8.947055 AAATGGATTAAGTGACCAATATTTGC 57.053 30.769 0.00 0.00 37.24 3.68
35 36 9.967451 TTGTAGAAATGGATTAAGTGACCAATA 57.033 29.630 0.00 0.00 37.24 1.90
36 37 8.877864 TTGTAGAAATGGATTAAGTGACCAAT 57.122 30.769 0.00 0.00 37.24 3.16
37 38 8.698973 TTTGTAGAAATGGATTAAGTGACCAA 57.301 30.769 0.00 0.00 37.24 3.67
38 39 8.877864 ATTTGTAGAAATGGATTAAGTGACCA 57.122 30.769 0.00 0.00 38.09 4.02
48 49 9.479549 AGTTGACCAATATTTGTAGAAATGGAT 57.520 29.630 8.05 0.00 33.63 3.41
56 57 7.390440 TGGTGAGAAGTTGACCAATATTTGTAG 59.610 37.037 0.00 0.00 36.81 2.74
58 59 6.016276 GTGGTGAGAAGTTGACCAATATTTGT 60.016 38.462 0.00 0.00 41.43 2.83
59 60 6.016360 TGTGGTGAGAAGTTGACCAATATTTG 60.016 38.462 0.00 0.00 41.43 2.32
75 78 1.134521 ACTTTTGAGCGTGTGGTGAGA 60.135 47.619 0.00 0.00 0.00 3.27
101 104 4.930963 TCCGTGTTTTAAGAGTCGTGTAA 58.069 39.130 0.00 0.00 0.00 2.41
107 110 5.103290 TGCAATTCCGTGTTTTAAGAGTC 57.897 39.130 0.00 0.00 0.00 3.36
109 112 5.173131 GTGTTGCAATTCCGTGTTTTAAGAG 59.827 40.000 0.59 0.00 0.00 2.85
117 120 1.000385 CATGGTGTTGCAATTCCGTGT 60.000 47.619 24.47 10.80 33.73 4.49
132 135 6.388619 AGTCCCTGTTTAAATAGTCATGGT 57.611 37.500 10.61 0.00 0.00 3.55
140 143 7.455008 TGGGCAAATTTAGTCCCTGTTTAAATA 59.545 33.333 17.90 0.00 39.49 1.40
142 145 5.602978 TGGGCAAATTTAGTCCCTGTTTAAA 59.397 36.000 17.90 0.00 39.49 1.52
149 152 3.076032 AGACTTGGGCAAATTTAGTCCCT 59.924 43.478 17.90 4.10 39.49 4.20
155 158 5.523438 ACGAAAAGACTTGGGCAAATTTA 57.477 34.783 0.00 0.00 0.00 1.40
169 172 7.795482 TGAAATTTGTCCTTCTACGAAAAGA 57.205 32.000 0.00 0.00 0.00 2.52
178 181 5.995282 TGTCGTGTATGAAATTTGTCCTTCT 59.005 36.000 0.00 0.00 0.00 2.85
197 201 2.803155 ATTGGTCTGCGCCATGTCGT 62.803 55.000 4.18 0.00 38.48 4.34
226 230 0.178301 GTACAAGTGCCCTCCTAGCC 59.822 60.000 0.00 0.00 0.00 3.93
274 278 1.664306 GTCGTCAGACCCGAGGTTT 59.336 57.895 0.00 0.00 41.41 3.27
340 344 2.642139 TTTAGAAGCACCGAGTACCG 57.358 50.000 0.00 0.00 38.18 4.02
368 372 6.486993 GTGACTTCACTCCTAAAATGGTTCTT 59.513 38.462 1.92 0.00 43.25 2.52
370 374 5.107065 CGTGACTTCACTCCTAAAATGGTTC 60.107 44.000 7.74 0.00 44.34 3.62
372 376 4.202326 ACGTGACTTCACTCCTAAAATGGT 60.202 41.667 7.74 0.00 44.34 3.55
373 377 4.315803 ACGTGACTTCACTCCTAAAATGG 58.684 43.478 7.74 0.00 44.34 3.16
374 378 5.924254 TGTACGTGACTTCACTCCTAAAATG 59.076 40.000 7.74 0.00 44.34 2.32
375 379 6.092955 TGTACGTGACTTCACTCCTAAAAT 57.907 37.500 7.74 0.00 44.34 1.82
379 383 5.300034 TCTTTTGTACGTGACTTCACTCCTA 59.700 40.000 7.74 0.00 44.34 2.94
474 493 5.916661 TTACTCACTCGCTCTTTCCTTAT 57.083 39.130 0.00 0.00 0.00 1.73
532 608 7.066645 AGACATGATCCACACATAAAACTCATG 59.933 37.037 0.00 7.45 42.63 3.07
533 609 7.114754 AGACATGATCCACACATAAAACTCAT 58.885 34.615 0.00 0.00 0.00 2.90
544 622 1.765314 AGCCCTAGACATGATCCACAC 59.235 52.381 0.00 0.00 0.00 3.82
545 623 1.764723 CAGCCCTAGACATGATCCACA 59.235 52.381 0.00 0.00 0.00 4.17
549 627 0.320247 CGCCAGCCCTAGACATGATC 60.320 60.000 0.00 0.00 0.00 2.92
555 633 3.917760 ATCGCGCCAGCCCTAGAC 61.918 66.667 0.00 0.00 41.18 2.59
574 652 4.630785 AGCCATCGCGTCGATCCG 62.631 66.667 5.77 0.00 45.19 4.18
575 653 3.032609 CAGCCATCGCGTCGATCC 61.033 66.667 5.77 6.56 45.19 3.36
576 654 3.032609 CCAGCCATCGCGTCGATC 61.033 66.667 5.77 3.18 45.19 3.69
578 656 4.193334 CTCCAGCCATCGCGTCGA 62.193 66.667 5.77 4.51 41.18 4.20
583 661 4.247380 CCTCCCTCCAGCCATCGC 62.247 72.222 0.00 0.00 0.00 4.58
584 662 3.554342 CCCTCCCTCCAGCCATCG 61.554 72.222 0.00 0.00 0.00 3.84
585 663 2.040464 TCCCTCCCTCCAGCCATC 60.040 66.667 0.00 0.00 0.00 3.51
587 665 4.421554 CCTCCCTCCCTCCAGCCA 62.422 72.222 0.00 0.00 0.00 4.75
631 1300 3.442273 GCTTGATCCCTCTCCTATAGTCG 59.558 52.174 0.00 0.00 0.00 4.18
633 1302 3.404425 AGGCTTGATCCCTCTCCTATAGT 59.596 47.826 0.00 0.00 0.00 2.12
642 1311 2.922234 CCCCAGGCTTGATCCCTC 59.078 66.667 0.00 0.00 0.00 4.30
656 1328 4.329545 TCACACGCTTCAGGCCCC 62.330 66.667 0.00 0.00 37.74 5.80
660 1332 3.414700 GCCGTCACACGCTTCAGG 61.415 66.667 0.00 0.00 40.91 3.86
678 1350 1.078143 GAGCCTCGGGACAAGCAAT 60.078 57.895 0.00 0.00 0.00 3.56
689 1361 2.125512 CAAAGGGTCGGAGCCTCG 60.126 66.667 27.49 18.07 38.74 4.63
701 1374 1.106944 ACAACGGAAGGCACCAAAGG 61.107 55.000 2.06 0.00 0.00 3.11
705 1378 0.034337 GAGTACAACGGAAGGCACCA 59.966 55.000 0.00 0.00 0.00 4.17
726 1403 4.489771 AAGCATTCCCGGGCGGAG 62.490 66.667 18.49 6.65 43.39 4.63
727 1404 4.794648 CAAGCATTCCCGGGCGGA 62.795 66.667 18.49 4.23 39.68 5.54
729 1406 3.508840 GACAAGCATTCCCGGGCG 61.509 66.667 18.49 7.95 34.54 6.13
730 1407 3.508840 CGACAAGCATTCCCGGGC 61.509 66.667 18.49 3.34 0.00 6.13
731 1408 2.824041 CCGACAAGCATTCCCGGG 60.824 66.667 16.85 16.85 36.72 5.73
732 1409 2.046314 ACCGACAAGCATTCCCGG 60.046 61.111 0.00 0.00 43.23 5.73
733 1410 1.635663 GACACCGACAAGCATTCCCG 61.636 60.000 0.00 0.00 0.00 5.14
734 1411 1.305930 GGACACCGACAAGCATTCCC 61.306 60.000 0.00 0.00 0.00 3.97
735 1412 0.605319 TGGACACCGACAAGCATTCC 60.605 55.000 0.00 0.00 0.00 3.01
736 1413 1.453155 ATGGACACCGACAAGCATTC 58.547 50.000 0.00 0.00 0.00 2.67
737 1414 1.909700 AATGGACACCGACAAGCATT 58.090 45.000 0.00 0.00 0.00 3.56
738 1415 1.812571 GAAATGGACACCGACAAGCAT 59.187 47.619 0.00 0.00 0.00 3.79
739 1416 1.202758 AGAAATGGACACCGACAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
740 1417 1.523758 AGAAATGGACACCGACAAGC 58.476 50.000 0.00 0.00 0.00 4.01
741 1418 2.157668 CGAAGAAATGGACACCGACAAG 59.842 50.000 0.00 0.00 0.00 3.16
742 1419 2.139917 CGAAGAAATGGACACCGACAA 58.860 47.619 0.00 0.00 0.00 3.18
743 1420 1.341852 TCGAAGAAATGGACACCGACA 59.658 47.619 0.00 0.00 0.00 4.35
744 1421 1.725164 GTCGAAGAAATGGACACCGAC 59.275 52.381 0.00 0.00 39.69 4.79
745 1422 1.341852 TGTCGAAGAAATGGACACCGA 59.658 47.619 0.00 0.00 41.22 4.69
746 1423 1.790755 TGTCGAAGAAATGGACACCG 58.209 50.000 0.00 0.00 41.22 4.94
747 1424 2.095718 GCTTGTCGAAGAAATGGACACC 60.096 50.000 0.00 0.00 45.07 4.16
748 1425 2.548057 TGCTTGTCGAAGAAATGGACAC 59.452 45.455 0.00 0.00 45.07 3.67
749 1426 2.844946 TGCTTGTCGAAGAAATGGACA 58.155 42.857 0.00 0.00 43.93 4.02
750 1427 4.425577 AATGCTTGTCGAAGAAATGGAC 57.574 40.909 0.00 0.00 39.69 4.02
751 1428 4.378356 CGAAATGCTTGTCGAAGAAATGGA 60.378 41.667 6.31 0.00 39.69 3.41
759 1436 1.153353 GTCCCGAAATGCTTGTCGAA 58.847 50.000 13.43 0.00 39.64 3.71
760 1437 1.011968 CGTCCCGAAATGCTTGTCGA 61.012 55.000 13.43 0.00 39.64 4.20
761 1438 1.419922 CGTCCCGAAATGCTTGTCG 59.580 57.895 5.22 5.22 37.01 4.35
768 1445 0.035820 TTTCCCTCCGTCCCGAAATG 60.036 55.000 0.00 0.00 0.00 2.32
769 1446 0.694196 TTTTCCCTCCGTCCCGAAAT 59.306 50.000 0.00 0.00 0.00 2.17
773 1450 0.391263 CTTCTTTTCCCTCCGTCCCG 60.391 60.000 0.00 0.00 0.00 5.14
774 1451 0.677098 GCTTCTTTTCCCTCCGTCCC 60.677 60.000 0.00 0.00 0.00 4.46
782 1459 5.106948 GCTAAAAATGCAAGCTTCTTTTCCC 60.107 40.000 0.00 0.00 33.40 3.97
793 1492 5.581874 CCCCTACAAATGCTAAAAATGCAAG 59.418 40.000 0.00 0.00 44.01 4.01
799 1498 4.216687 CGTCACCCCTACAAATGCTAAAAA 59.783 41.667 0.00 0.00 0.00 1.94
802 1501 2.303600 ACGTCACCCCTACAAATGCTAA 59.696 45.455 0.00 0.00 0.00 3.09
803 1502 1.903860 ACGTCACCCCTACAAATGCTA 59.096 47.619 0.00 0.00 0.00 3.49
804 1503 0.690762 ACGTCACCCCTACAAATGCT 59.309 50.000 0.00 0.00 0.00 3.79
824 1649 4.092383 GCATCACCATTTCTTTTGCATGTC 59.908 41.667 0.00 0.00 0.00 3.06
831 1656 4.703379 TTTGGGCATCACCATTTCTTTT 57.297 36.364 0.00 0.00 40.91 2.27
881 1713 4.083862 ACCCCTCTCTTTCCGCGC 62.084 66.667 0.00 0.00 0.00 6.86
891 1723 0.485099 ACTCACTCACTCACCCCTCT 59.515 55.000 0.00 0.00 0.00 3.69
896 1728 1.957177 TGACTCACTCACTCACTCACC 59.043 52.381 0.00 0.00 0.00 4.02
899 1731 2.881513 TGACTGACTCACTCACTCACTC 59.118 50.000 0.00 0.00 0.00 3.51
900 1732 2.884012 CTGACTGACTCACTCACTCACT 59.116 50.000 0.00 0.00 0.00 3.41
901 1733 2.881513 TCTGACTGACTCACTCACTCAC 59.118 50.000 0.00 0.00 0.00 3.51
902 1734 3.214696 TCTGACTGACTCACTCACTCA 57.785 47.619 0.00 0.00 0.00 3.41
903 1735 3.128589 GGATCTGACTGACTCACTCACTC 59.871 52.174 0.00 0.00 0.00 3.51
904 1736 3.088532 GGATCTGACTGACTCACTCACT 58.911 50.000 0.00 0.00 0.00 3.41
905 1737 3.088532 AGGATCTGACTGACTCACTCAC 58.911 50.000 0.00 0.00 0.00 3.51
906 1738 3.351740 GAGGATCTGACTGACTCACTCA 58.648 50.000 0.00 0.00 0.00 3.41
907 1739 2.687935 GGAGGATCTGACTGACTCACTC 59.312 54.545 0.00 0.00 33.73 3.51
908 1740 2.622977 GGGAGGATCTGACTGACTCACT 60.623 54.545 0.00 0.00 33.73 3.41
909 1741 1.754226 GGGAGGATCTGACTGACTCAC 59.246 57.143 0.00 0.00 33.73 3.51
910 1742 1.643286 AGGGAGGATCTGACTGACTCA 59.357 52.381 0.00 0.00 33.73 3.41
911 1743 2.452600 AGGGAGGATCTGACTGACTC 57.547 55.000 0.00 0.00 33.73 3.36
919 1751 1.765314 ACCGAATGAAGGGAGGATCTG 59.235 52.381 0.00 0.00 33.73 2.90
925 1757 1.641577 GTCGAACCGAATGAAGGGAG 58.358 55.000 0.00 0.00 37.72 4.30
929 1761 1.803334 TTGGGTCGAACCGAATGAAG 58.197 50.000 16.31 0.00 39.83 3.02
952 1784 1.751924 GACTGACTGATACGGAGCCTT 59.248 52.381 0.00 0.00 0.00 4.35
954 1786 1.335496 GAGACTGACTGATACGGAGCC 59.665 57.143 0.00 0.00 0.00 4.70
955 1787 2.017782 TGAGACTGACTGATACGGAGC 58.982 52.381 0.00 0.00 0.00 4.70
957 1789 3.271729 GAGTGAGACTGACTGATACGGA 58.728 50.000 0.00 0.00 0.00 4.69
958 1790 3.010420 TGAGTGAGACTGACTGATACGG 58.990 50.000 0.00 0.00 0.00 4.02
959 1791 3.687212 AGTGAGTGAGACTGACTGATACG 59.313 47.826 0.00 0.00 41.10 3.06
960 1792 4.697828 TGAGTGAGTGAGACTGACTGATAC 59.302 45.833 0.00 0.00 42.67 2.24
962 1794 3.505680 GTGAGTGAGTGAGACTGACTGAT 59.494 47.826 0.00 0.00 42.67 2.90
963 1795 2.881513 GTGAGTGAGTGAGACTGACTGA 59.118 50.000 0.00 0.00 42.67 3.41
964 1796 2.350293 CGTGAGTGAGTGAGACTGACTG 60.350 54.545 0.00 0.00 42.67 3.51
965 1797 1.876799 CGTGAGTGAGTGAGACTGACT 59.123 52.381 0.00 0.00 45.26 3.41
966 1798 1.664588 GCGTGAGTGAGTGAGACTGAC 60.665 57.143 0.00 0.00 32.28 3.51
970 1809 2.083522 GCGCGTGAGTGAGTGAGAC 61.084 63.158 8.43 0.00 46.66 3.36
994 1833 1.079266 CTCACTGGCTCTGGCTGTC 60.079 63.158 1.11 0.00 38.09 3.51
1009 1848 0.397941 CCAACCAAGGTGAGAGCTCA 59.602 55.000 17.77 0.00 37.24 4.26
1011 1850 1.763770 CCCAACCAAGGTGAGAGCT 59.236 57.895 0.00 0.00 0.00 4.09
1012 1851 1.303643 CCCCAACCAAGGTGAGAGC 60.304 63.158 0.00 0.00 0.00 4.09
1014 1853 4.430388 ACCCCAACCAAGGTGAGA 57.570 55.556 0.00 0.00 34.20 3.27
1018 1857 1.163408 ATTACCACCCCAACCAAGGT 58.837 50.000 0.00 0.00 36.58 3.50
1019 1858 3.459710 TTATTACCACCCCAACCAAGG 57.540 47.619 0.00 0.00 0.00 3.61
1020 1859 7.201965 GGATTTATTATTACCACCCCAACCAAG 60.202 40.741 0.00 0.00 0.00 3.61
1024 1863 6.266786 CCTGGATTTATTATTACCACCCCAAC 59.733 42.308 0.00 0.00 0.00 3.77
1025 1864 6.068140 ACCTGGATTTATTATTACCACCCCAA 60.068 38.462 0.00 0.00 0.00 4.12
1026 1865 5.437043 ACCTGGATTTATTATTACCACCCCA 59.563 40.000 0.00 0.00 0.00 4.96
1027 1866 5.960704 ACCTGGATTTATTATTACCACCCC 58.039 41.667 0.00 0.00 0.00 4.95
1028 1867 6.008331 GGACCTGGATTTATTATTACCACCC 58.992 44.000 0.00 0.00 0.00 4.61
1068 1912 1.690633 GCAGAGGGATGGACCTGGA 60.691 63.158 0.00 0.00 42.10 3.86
1070 1914 0.179936 GAAGCAGAGGGATGGACCTG 59.820 60.000 0.00 0.00 42.10 4.00
1071 1915 0.043940 AGAAGCAGAGGGATGGACCT 59.956 55.000 0.00 0.00 45.57 3.85
1072 1916 0.179936 CAGAAGCAGAGGGATGGACC 59.820 60.000 0.00 0.00 38.08 4.46
1073 1917 0.463474 GCAGAAGCAGAGGGATGGAC 60.463 60.000 0.00 0.00 41.58 4.02
1074 1918 1.630126 GGCAGAAGCAGAGGGATGGA 61.630 60.000 0.00 0.00 44.61 3.41
1076 1920 1.153005 GGGCAGAAGCAGAGGGATG 60.153 63.158 0.00 0.00 44.61 3.51
1077 1921 1.307691 AGGGCAGAAGCAGAGGGAT 60.308 57.895 0.00 0.00 44.61 3.85
1081 1925 1.153667 GTCGAGGGCAGAAGCAGAG 60.154 63.158 0.00 0.00 44.61 3.35
1082 1926 2.650116 GGTCGAGGGCAGAAGCAGA 61.650 63.158 0.00 0.00 44.61 4.26
1083 1927 2.125350 GGTCGAGGGCAGAAGCAG 60.125 66.667 0.00 0.00 44.61 4.24
1084 1928 3.706373 GGGTCGAGGGCAGAAGCA 61.706 66.667 0.00 0.00 44.61 3.91
1085 1929 4.821589 CGGGTCGAGGGCAGAAGC 62.822 72.222 0.00 0.00 41.10 3.86
1264 2115 3.827898 GAGTGGACGGGAGAGGCG 61.828 72.222 0.00 0.00 0.00 5.52
1265 2116 3.827898 CGAGTGGACGGGAGAGGC 61.828 72.222 0.00 0.00 0.00 4.70
1266 2117 1.935327 GAACGAGTGGACGGGAGAGG 61.935 65.000 0.00 0.00 37.61 3.69
1360 2220 1.762460 GGGAGAGAGGCCGAATCCA 60.762 63.158 17.53 0.00 0.00 3.41
1368 2228 3.223589 GAGCTCCGGGAGAGAGGC 61.224 72.222 27.95 12.59 46.50 4.70
1403 2278 3.445518 TAATGAGCAGCTCCCGCCG 62.446 63.158 20.16 0.00 36.60 6.46
1421 2297 2.584608 CGGCCCAGATCGAAACCT 59.415 61.111 0.00 0.00 0.00 3.50
1444 2320 3.559171 CGAGGAGAGGAGAGGATAAGGAG 60.559 56.522 0.00 0.00 0.00 3.69
1525 2412 0.318275 GCCAAAACCAAATCGTGCGA 60.318 50.000 0.00 0.00 0.00 5.10
1527 2414 1.792367 GAAGCCAAAACCAAATCGTGC 59.208 47.619 0.00 0.00 0.00 5.34
1529 2416 1.000717 CGGAAGCCAAAACCAAATCGT 60.001 47.619 0.00 0.00 0.00 3.73
1604 2551 0.968405 GCAAATTCAAGGGGCTGACA 59.032 50.000 0.00 0.00 0.00 3.58
1609 2556 0.390735 CAGCAGCAAATTCAAGGGGC 60.391 55.000 0.00 0.00 0.00 5.80
1610 2557 0.390735 GCAGCAGCAAATTCAAGGGG 60.391 55.000 0.00 0.00 41.58 4.79
1633 2580 3.696281 TGCATCAATCAACTATTGGCG 57.304 42.857 0.00 0.00 44.42 5.69
1634 2581 5.009310 TCTGATGCATCAATCAACTATTGGC 59.991 40.000 28.39 0.00 44.42 4.52
1635 2582 6.262496 AGTCTGATGCATCAATCAACTATTGG 59.738 38.462 28.39 13.25 44.42 3.16
1636 2583 7.260558 AGTCTGATGCATCAATCAACTATTG 57.739 36.000 28.39 13.73 45.47 1.90
1637 2584 7.555195 TGAAGTCTGATGCATCAATCAACTATT 59.445 33.333 28.39 15.02 36.16 1.73
1638 2585 7.052248 TGAAGTCTGATGCATCAATCAACTAT 58.948 34.615 28.39 17.55 36.16 2.12
1639 2586 6.408869 TGAAGTCTGATGCATCAATCAACTA 58.591 36.000 28.39 13.01 36.16 2.24
1640 2587 5.250982 TGAAGTCTGATGCATCAATCAACT 58.749 37.500 28.39 23.35 36.16 3.16
1641 2588 5.353400 TCTGAAGTCTGATGCATCAATCAAC 59.647 40.000 28.39 21.81 36.16 3.18
1642 2589 5.493809 TCTGAAGTCTGATGCATCAATCAA 58.506 37.500 28.39 12.71 36.16 2.57
1659 2606 5.508825 GCATGGTAGGTCTGTATCTCTGAAG 60.509 48.000 0.00 0.00 0.00 3.02
1703 2690 2.199236 GCGTGCGTTAACCTAGCTTAT 58.801 47.619 0.00 0.00 0.00 1.73
1815 2806 4.319549 GGTGCGAAAAGTAAAGTGGAGAAG 60.320 45.833 0.00 0.00 0.00 2.85
1823 2814 3.399330 TGGAGAGGTGCGAAAAGTAAAG 58.601 45.455 0.00 0.00 0.00 1.85
1829 2824 1.623311 TGAGATGGAGAGGTGCGAAAA 59.377 47.619 0.00 0.00 0.00 2.29
1838 2833 0.539051 AGCGGGTTTGAGATGGAGAG 59.461 55.000 0.00 0.00 0.00 3.20
1848 2843 2.223180 GCTATAAACGGAAGCGGGTTTG 60.223 50.000 0.00 0.00 37.01 2.93
1877 2876 4.161333 GACACATCGGAAAATTTGAGCAG 58.839 43.478 0.00 0.00 0.00 4.24
1931 2933 1.272212 CAATGGTAACCCTGTTGTGCC 59.728 52.381 0.00 0.00 0.00 5.01
2000 3004 1.267806 AGCAAGGCATTTCAGTTCACG 59.732 47.619 0.00 0.00 0.00 4.35
2135 3144 1.009829 GCACTCGCTTCCCTGTATTG 58.990 55.000 0.00 0.00 34.30 1.90
2136 3145 0.460284 CGCACTCGCTTCCCTGTATT 60.460 55.000 0.00 0.00 35.30 1.89
2139 3148 3.288308 CTCGCACTCGCTTCCCTGT 62.288 63.158 0.00 0.00 35.30 4.00
2145 3154 2.178521 CGGTACTCGCACTCGCTT 59.821 61.111 0.00 0.00 35.30 4.68
2288 3297 8.560124 AAAGAGAACAGAGGAGGTCATATTAT 57.440 34.615 0.00 0.00 0.00 1.28
2321 3335 4.172505 CTGACTAGAACTGCAGTAGCTTG 58.827 47.826 22.01 21.38 42.74 4.01
2401 3415 0.463654 TGCGAGCCACAAGAACAAGT 60.464 50.000 0.00 0.00 0.00 3.16
2432 3446 0.689080 TGGGTGGCATGGTTTTGTGT 60.689 50.000 0.00 0.00 0.00 3.72
2444 3458 2.876550 GGTATTCGAGTAAATGGGTGGC 59.123 50.000 0.00 0.00 0.00 5.01
2445 3459 4.127171 CAGGTATTCGAGTAAATGGGTGG 58.873 47.826 0.00 0.00 0.00 4.61
2468 3483 3.712091 ATTACTGTAGTCGTAGCTGCC 57.288 47.619 0.00 0.00 0.00 4.85
2493 3512 6.513393 CGGCTGAAAAGAAAGTACACTCAATT 60.513 38.462 0.00 0.00 0.00 2.32
2494 3513 5.049405 CGGCTGAAAAGAAAGTACACTCAAT 60.049 40.000 0.00 0.00 0.00 2.57
2495 3514 4.272504 CGGCTGAAAAGAAAGTACACTCAA 59.727 41.667 0.00 0.00 0.00 3.02
2496 3515 3.807622 CGGCTGAAAAGAAAGTACACTCA 59.192 43.478 0.00 0.00 0.00 3.41
2584 3608 0.250467 GAAGGGCTTGAGCTGTCACA 60.250 55.000 0.00 0.00 41.70 3.58
2588 3612 0.034670 GATGGAAGGGCTTGAGCTGT 60.035 55.000 0.00 0.00 41.70 4.40
2606 3630 2.929903 GCTTTGCCGTGCCATTGGA 61.930 57.895 6.95 0.00 0.00 3.53
2689 3713 3.372730 GCAAACTGCGGCCCATGA 61.373 61.111 0.00 0.00 31.71 3.07
2734 3758 2.288457 CGAGTTGGAGTTCTTCAGCTGA 60.288 50.000 13.74 13.74 0.00 4.26
2776 3800 0.036294 GAGTGGTACTCTGTTGGGGC 60.036 60.000 1.86 0.00 41.88 5.80
2800 3824 3.259064 GACTTTAAGCTCGCCATGTACA 58.741 45.455 0.00 0.00 0.00 2.90
2929 3953 1.787847 CTGGTAACTCTTTGCCGCG 59.212 57.895 0.00 0.00 40.30 6.46
2956 3980 1.707632 CAGACTCAGCTTGAACCGAG 58.292 55.000 0.00 0.00 0.00 4.63
2963 3987 0.037882 TTCTCGGCAGACTCAGCTTG 60.038 55.000 0.00 0.00 0.00 4.01
2977 4001 2.100916 ACCCGTCTCCATAACATTCTCG 59.899 50.000 0.00 0.00 0.00 4.04
3086 4110 0.869028 GCACGCCGGTAACTACTAGC 60.869 60.000 1.90 0.00 0.00 3.42
3106 4130 0.604780 CACTGTTCTGCTCCCCACTG 60.605 60.000 0.00 0.00 0.00 3.66
3109 4133 2.528818 CCCACTGTTCTGCTCCCCA 61.529 63.158 0.00 0.00 0.00 4.96
3128 4152 1.340017 ACCATGTGCTTGCCTTCGTAT 60.340 47.619 0.00 0.00 0.00 3.06
3130 4154 1.228245 ACCATGTGCTTGCCTTCGT 60.228 52.632 0.00 0.00 0.00 3.85
3133 4157 2.576832 GCCACCATGTGCTTGCCTT 61.577 57.895 0.00 0.00 31.34 4.35
3216 4240 0.682532 AGGCATCGACTCTCTCTGCA 60.683 55.000 7.17 0.00 34.56 4.41
3238 4262 3.303659 GCAAGTCTGAACTTTCTGCAGTC 60.304 47.826 14.67 3.80 43.28 3.51
3354 4381 0.598419 TCGACGATGATGATGGCTGC 60.598 55.000 0.00 0.00 0.00 5.25
3366 4393 2.482333 CGCTCTTCCCCTCGACGAT 61.482 63.158 0.00 0.00 0.00 3.73
3367 4394 3.132139 CGCTCTTCCCCTCGACGA 61.132 66.667 0.00 0.00 0.00 4.20
3376 4403 3.397613 ATGGGCAGCTCGCTCTTCC 62.398 63.158 9.05 2.96 43.91 3.46
3446 4473 1.446907 CCAAGTCTGTCCAGTGATGC 58.553 55.000 0.00 0.00 0.00 3.91
3862 4889 1.377366 CTTCCTGCATGCTGCCAGAG 61.377 60.000 20.33 6.36 44.23 3.35
3929 4956 3.364565 GCCTCGACTCTATCATTCTCGAC 60.365 52.174 0.00 0.00 30.56 4.20
3934 4961 3.056304 GCTTGCCTCGACTCTATCATTC 58.944 50.000 0.00 0.00 0.00 2.67
3937 4964 1.135139 GTGCTTGCCTCGACTCTATCA 59.865 52.381 0.00 0.00 0.00 2.15
3954 4981 3.596214 TCTACTTCATTTTCCTCGGTGC 58.404 45.455 0.00 0.00 0.00 5.01
3964 4991 8.432805 TGGAACTCTTCTTCTTCTACTTCATTT 58.567 33.333 0.00 0.00 0.00 2.32
3966 4993 7.382898 GTGGAACTCTTCTTCTTCTACTTCAT 58.617 38.462 0.00 0.00 0.00 2.57
3972 4999 4.489737 TGGGTGGAACTCTTCTTCTTCTA 58.510 43.478 0.00 0.00 38.97 2.10
4154 5181 1.886542 GTTTTCTCCCTCGGCATTTGT 59.113 47.619 0.00 0.00 0.00 2.83
4168 5195 3.190118 CGTACTCCTGGTAGTCGTTTTCT 59.810 47.826 0.00 0.00 0.00 2.52
4219 5246 0.519175 CAACCTTGCGAGCGAAATCG 60.519 55.000 0.00 0.00 45.48 3.34
4635 5708 3.089838 CCAGGTGGAGGCAATGGA 58.910 61.111 0.00 0.00 37.39 3.41
4701 5774 8.276252 TGAGCAAAAGTTTTAGTAGTCTTTGT 57.724 30.769 0.00 0.00 31.75 2.83
4706 5779 7.694886 ACACTTGAGCAAAAGTTTTAGTAGTC 58.305 34.615 0.00 0.00 38.34 2.59
4760 5835 4.286291 AGGACAAAGTACCCTTGGTAGAAG 59.714 45.833 9.44 0.00 39.02 2.85
4840 5915 6.486657 CCAGGAAAATGTTCAGTTCTCTACAA 59.513 38.462 0.00 0.00 35.25 2.41
4888 5963 3.201290 GACCCTACATGTCAGCTTCATG 58.799 50.000 20.48 20.48 45.41 3.07
4958 6034 7.587629 ACAATGTGTGATCTGTTTGTTCATAG 58.412 34.615 0.00 0.00 0.00 2.23
4965 6041 5.239306 AGTGGTACAATGTGTGATCTGTTTG 59.761 40.000 0.00 0.00 44.16 2.93
4966 6042 5.376625 AGTGGTACAATGTGTGATCTGTTT 58.623 37.500 0.00 0.00 44.16 2.83
4967 6043 4.973168 AGTGGTACAATGTGTGATCTGTT 58.027 39.130 0.00 0.00 44.16 3.16
4968 6044 4.623932 AGTGGTACAATGTGTGATCTGT 57.376 40.909 0.00 0.00 44.16 3.41
4969 6045 7.615582 AAATAGTGGTACAATGTGTGATCTG 57.384 36.000 0.00 0.00 44.16 2.90
4970 6046 7.665559 ACAAAATAGTGGTACAATGTGTGATCT 59.334 33.333 0.00 0.00 44.16 2.75
4972 6048 7.759489 ACAAAATAGTGGTACAATGTGTGAT 57.241 32.000 0.00 0.00 44.16 3.06
4973 6049 8.856153 ATACAAAATAGTGGTACAATGTGTGA 57.144 30.769 0.00 0.00 44.16 3.58
4983 6059 8.726988 GCACTGAAGAAATACAAAATAGTGGTA 58.273 33.333 0.00 0.00 34.99 3.25
4984 6060 7.230510 TGCACTGAAGAAATACAAAATAGTGGT 59.769 33.333 0.00 0.00 34.99 4.16
4992 6068 9.230122 TCATCTTATGCACTGAAGAAATACAAA 57.770 29.630 10.59 0.00 35.40 2.83
4993 6069 8.791327 TCATCTTATGCACTGAAGAAATACAA 57.209 30.769 10.59 0.00 35.40 2.41
4994 6070 8.833493 CATCATCTTATGCACTGAAGAAATACA 58.167 33.333 10.59 0.00 35.40 2.29
4995 6071 9.049523 TCATCATCTTATGCACTGAAGAAATAC 57.950 33.333 10.59 0.00 35.40 1.89
4997 6073 8.693120 ATCATCATCTTATGCACTGAAGAAAT 57.307 30.769 10.59 6.14 35.40 2.17
4998 6074 7.771826 TGATCATCATCTTATGCACTGAAGAAA 59.228 33.333 10.59 4.48 35.40 2.52
5002 6078 6.350906 TGTGATCATCATCTTATGCACTGAA 58.649 36.000 0.00 0.00 0.00 3.02
5003 6079 5.920903 TGTGATCATCATCTTATGCACTGA 58.079 37.500 0.00 0.00 0.00 3.41
5004 6080 5.179555 CCTGTGATCATCATCTTATGCACTG 59.820 44.000 0.00 0.00 0.00 3.66
5005 6081 5.163227 ACCTGTGATCATCATCTTATGCACT 60.163 40.000 0.00 0.00 0.00 4.40
5008 6084 5.303165 TGACCTGTGATCATCATCTTATGC 58.697 41.667 0.00 0.00 0.00 3.14
5009 6085 7.981102 ATTGACCTGTGATCATCATCTTATG 57.019 36.000 0.00 0.00 0.00 1.90
5011 6087 7.567458 TGAATTGACCTGTGATCATCATCTTA 58.433 34.615 0.00 0.00 0.00 2.10
5012 6088 6.420638 TGAATTGACCTGTGATCATCATCTT 58.579 36.000 0.00 0.00 0.00 2.40
5013 6089 5.997843 TGAATTGACCTGTGATCATCATCT 58.002 37.500 0.00 0.00 0.00 2.90
5014 6090 6.688637 TTGAATTGACCTGTGATCATCATC 57.311 37.500 0.00 0.00 0.00 2.92
5016 6092 6.888088 AGAATTGAATTGACCTGTGATCATCA 59.112 34.615 0.00 0.00 0.00 3.07
5017 6093 7.330900 AGAATTGAATTGACCTGTGATCATC 57.669 36.000 0.00 0.00 0.00 2.92
5018 6094 8.991783 ATAGAATTGAATTGACCTGTGATCAT 57.008 30.769 0.00 0.00 0.00 2.45
5047 6123 9.521841 TGGAAATGTATGTTCTACCATAACAAA 57.478 29.630 0.00 0.00 40.05 2.83
5048 6124 9.693739 ATGGAAATGTATGTTCTACCATAACAA 57.306 29.630 0.00 0.00 40.05 2.83
5050 6126 9.950680 CAATGGAAATGTATGTTCTACCATAAC 57.049 33.333 0.00 0.00 36.13 1.89
5052 6128 7.230510 GGCAATGGAAATGTATGTTCTACCATA 59.769 37.037 0.00 0.00 36.13 2.74
5054 6130 5.359576 GGCAATGGAAATGTATGTTCTACCA 59.640 40.000 0.00 0.00 0.00 3.25
5056 6132 6.238759 GGAGGCAATGGAAATGTATGTTCTAC 60.239 42.308 0.00 0.00 0.00 2.59
5058 6134 4.646492 GGAGGCAATGGAAATGTATGTTCT 59.354 41.667 0.00 0.00 0.00 3.01
5059 6135 4.498009 CGGAGGCAATGGAAATGTATGTTC 60.498 45.833 0.00 0.00 0.00 3.18
5060 6136 3.381272 CGGAGGCAATGGAAATGTATGTT 59.619 43.478 0.00 0.00 0.00 2.71
5061 6137 2.951642 CGGAGGCAATGGAAATGTATGT 59.048 45.455 0.00 0.00 0.00 2.29
5065 6141 1.923356 AACGGAGGCAATGGAAATGT 58.077 45.000 0.00 0.00 0.00 2.71
5068 6144 0.965439 CCAAACGGAGGCAATGGAAA 59.035 50.000 0.00 0.00 32.82 3.13
5070 6146 4.413928 CCAAACGGAGGCAATGGA 57.586 55.556 0.00 0.00 32.82 3.41
5077 6153 2.981859 ATACTGTAGCCAAACGGAGG 57.018 50.000 0.00 0.00 0.00 4.30
5079 6155 4.010667 ACAAATACTGTAGCCAAACGGA 57.989 40.909 0.00 0.00 36.10 4.69
5080 6156 6.431198 AATACAAATACTGTAGCCAAACGG 57.569 37.500 0.00 0.00 43.78 4.44
5081 6157 7.523219 TGAAATACAAATACTGTAGCCAAACG 58.477 34.615 0.00 0.00 43.78 3.60
5082 6158 9.855021 ATTGAAATACAAATACTGTAGCCAAAC 57.145 29.630 0.00 0.00 43.78 2.93
5085 6161 8.822855 CGTATTGAAATACAAATACTGTAGCCA 58.177 33.333 12.42 0.00 43.78 4.75
5137 6631 6.211584 GCCTCAACTTAGGATGACCAGATATA 59.788 42.308 0.00 0.00 39.15 0.86
5149 6643 5.755409 TTTCATACAGCCTCAACTTAGGA 57.245 39.130 0.00 0.00 39.15 2.94
5150 6644 8.506168 TTAATTTCATACAGCCTCAACTTAGG 57.494 34.615 0.00 0.00 39.87 2.69
5190 6685 9.277783 CCTAGAAAAATATGGTATCTGGTTCAG 57.722 37.037 0.00 0.00 0.00 3.02
5191 6686 8.998814 TCCTAGAAAAATATGGTATCTGGTTCA 58.001 33.333 0.00 0.00 0.00 3.18
5192 6687 9.847224 TTCCTAGAAAAATATGGTATCTGGTTC 57.153 33.333 0.00 0.00 0.00 3.62
5194 6689 9.628500 GTTTCCTAGAAAAATATGGTATCTGGT 57.372 33.333 0.00 0.00 0.00 4.00
5195 6690 9.627123 TGTTTCCTAGAAAAATATGGTATCTGG 57.373 33.333 0.00 0.00 0.00 3.86
5227 6722 2.223537 AAAAGAAAAGGCACCGCTTG 57.776 45.000 0.00 0.00 0.00 4.01
5231 6726 2.228103 GGGAGTAAAAGAAAAGGCACCG 59.772 50.000 0.00 0.00 0.00 4.94
5304 6799 8.030692 ACACACAATGTATCATTTTGATCCTTG 58.969 33.333 13.22 5.60 40.88 3.61
5310 6805 7.445096 AGAGTCACACACAATGTATCATTTTGA 59.555 33.333 13.22 1.66 40.64 2.69
5340 6840 4.629634 TGACCGTGATGTTTGTATAAGCTG 59.370 41.667 0.00 0.00 0.00 4.24
5351 6851 5.353123 GTGGTGTTATTATGACCGTGATGTT 59.647 40.000 0.00 0.00 31.87 2.71
5352 6852 4.873827 GTGGTGTTATTATGACCGTGATGT 59.126 41.667 0.00 0.00 31.87 3.06
5353 6853 4.873259 TGTGGTGTTATTATGACCGTGATG 59.127 41.667 0.00 0.00 31.87 3.07
5354 6854 4.873827 GTGTGGTGTTATTATGACCGTGAT 59.126 41.667 0.00 0.00 31.87 3.06
5355 6855 4.247258 GTGTGGTGTTATTATGACCGTGA 58.753 43.478 0.00 0.00 31.87 4.35
5356 6856 3.372822 GGTGTGGTGTTATTATGACCGTG 59.627 47.826 0.00 0.00 31.87 4.94
5357 6857 3.008157 TGGTGTGGTGTTATTATGACCGT 59.992 43.478 0.00 0.00 31.87 4.83
5358 6858 3.372822 GTGGTGTGGTGTTATTATGACCG 59.627 47.826 0.00 0.00 31.87 4.79
5359 6859 4.328536 TGTGGTGTGGTGTTATTATGACC 58.671 43.478 0.00 0.00 0.00 4.02
5360 6860 5.645929 TGATGTGGTGTGGTGTTATTATGAC 59.354 40.000 0.00 0.00 0.00 3.06
5361 6861 5.645929 GTGATGTGGTGTGGTGTTATTATGA 59.354 40.000 0.00 0.00 0.00 2.15
5362 6862 5.414144 TGTGATGTGGTGTGGTGTTATTATG 59.586 40.000 0.00 0.00 0.00 1.90
5363 6863 5.565509 TGTGATGTGGTGTGGTGTTATTAT 58.434 37.500 0.00 0.00 0.00 1.28
5364 6864 4.974399 TGTGATGTGGTGTGGTGTTATTA 58.026 39.130 0.00 0.00 0.00 0.98
5365 6865 3.826524 TGTGATGTGGTGTGGTGTTATT 58.173 40.909 0.00 0.00 0.00 1.40
5366 6866 3.500448 TGTGATGTGGTGTGGTGTTAT 57.500 42.857 0.00 0.00 0.00 1.89
5367 6867 3.145286 CATGTGATGTGGTGTGGTGTTA 58.855 45.455 0.00 0.00 0.00 2.41
5368 6868 1.955778 CATGTGATGTGGTGTGGTGTT 59.044 47.619 0.00 0.00 0.00 3.32
5369 6869 1.133823 ACATGTGATGTGGTGTGGTGT 60.134 47.619 0.00 0.00 43.01 4.16
5370 6870 1.536766 GACATGTGATGTGGTGTGGTG 59.463 52.381 1.15 0.00 45.03 4.17
5371 6871 1.545428 GGACATGTGATGTGGTGTGGT 60.545 52.381 1.15 0.00 45.03 4.16
5372 6872 1.167851 GGACATGTGATGTGGTGTGG 58.832 55.000 1.15 0.00 45.03 4.17
5373 6873 1.167851 GGGACATGTGATGTGGTGTG 58.832 55.000 1.15 0.00 45.03 3.82
5374 6874 0.038166 GGGGACATGTGATGTGGTGT 59.962 55.000 1.15 0.00 45.03 4.16
5375 6875 0.680921 GGGGGACATGTGATGTGGTG 60.681 60.000 1.15 0.00 45.03 4.17
5376 6876 1.691219 GGGGGACATGTGATGTGGT 59.309 57.895 1.15 0.00 45.03 4.16
5377 6877 4.664062 GGGGGACATGTGATGTGG 57.336 61.111 1.15 0.00 45.03 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.