Multiple sequence alignment - TraesCS6D01G402100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G402100 chr6D 100.000 2279 0 0 1 2279 470753620 470755898 0.000000e+00 4209.0
1 TraesCS6D01G402100 chr6D 81.695 885 108 27 262 1112 470786605 470787469 0.000000e+00 688.0
2 TraesCS6D01G402100 chr6D 79.710 690 100 24 214 867 470725770 470726455 1.590000e-126 462.0
3 TraesCS6D01G402100 chr6D 97.561 41 1 0 2136 2176 193536365 193536325 1.130000e-08 71.3
4 TraesCS6D01G402100 chr6D 87.097 62 6 2 1448 1508 350516697 350516637 4.060000e-08 69.4
5 TraesCS6D01G402100 chr6D 100.000 30 0 0 1479 1508 25647013 25646984 3.160000e-04 56.5
6 TraesCS6D01G402100 chr6B 92.345 1450 75 15 50 1475 720023704 720022267 0.000000e+00 2030.0
7 TraesCS6D01G402100 chr6B 81.954 870 117 26 277 1112 719948587 719947724 0.000000e+00 701.0
8 TraesCS6D01G402100 chr6B 95.000 160 8 0 1505 1664 720009545 720009386 3.760000e-63 252.0
9 TraesCS6D01G402100 chr6B 93.706 143 8 1 1366 1508 495538728 495538587 1.770000e-51 213.0
10 TraesCS6D01G402100 chr6B 96.117 103 2 2 2179 2279 720008405 720008303 1.400000e-37 167.0
11 TraesCS6D01G402100 chr6B 94.118 51 2 1 1459 1508 720009620 720009570 2.430000e-10 76.8
12 TraesCS6D01G402100 chr6A 92.958 1349 72 5 44 1370 615620536 615621883 0.000000e+00 1943.0
13 TraesCS6D01G402100 chr6A 86.562 320 26 8 1505 1819 615621867 615622174 1.010000e-88 337.0
14 TraesCS6D01G402100 chr6A 96.970 33 1 0 1476 1508 23676700 23676668 3.160000e-04 56.5
15 TraesCS6D01G402100 chr5D 96.667 60 1 1 1366 1424 27089049 27089108 5.180000e-17 99.0
16 TraesCS6D01G402100 chr5D 90.909 66 6 0 1443 1508 27094071 27094136 3.120000e-14 89.8
17 TraesCS6D01G402100 chr5D 97.561 41 1 0 2136 2176 233046399 233046439 1.130000e-08 71.3
18 TraesCS6D01G402100 chrUn 97.561 41 1 0 2136 2176 447134787 447134827 1.130000e-08 71.3
19 TraesCS6D01G402100 chr4B 97.561 41 1 0 2136 2176 659578583 659578543 1.130000e-08 71.3
20 TraesCS6D01G402100 chr4B 93.182 44 2 1 1366 1408 469015413 469015370 1.890000e-06 63.9
21 TraesCS6D01G402100 chr3D 97.561 41 1 0 2136 2176 213401810 213401850 1.130000e-08 71.3
22 TraesCS6D01G402100 chr3D 97.561 41 1 0 2136 2176 213404719 213404679 1.130000e-08 71.3
23 TraesCS6D01G402100 chr3D 97.561 41 1 0 2136 2176 505270164 505270124 1.130000e-08 71.3
24 TraesCS6D01G402100 chr3D 97.561 41 1 0 2136 2176 589254733 589254773 1.130000e-08 71.3
25 TraesCS6D01G402100 chr3D 97.297 37 0 1 1473 1508 255393404 255393440 6.800000e-06 62.1
26 TraesCS6D01G402100 chr1D 97.561 41 1 0 2136 2176 254530699 254530739 1.130000e-08 71.3
27 TraesCS6D01G402100 chr2D 100.000 35 0 0 1474 1508 483870959 483870993 5.250000e-07 65.8
28 TraesCS6D01G402100 chr2B 97.368 38 0 1 1471 1508 221737782 221737746 1.890000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G402100 chr6D 470753620 470755898 2278 False 4209 4209 100.000 1 2279 1 chr6D.!!$F2 2278
1 TraesCS6D01G402100 chr6D 470786605 470787469 864 False 688 688 81.695 262 1112 1 chr6D.!!$F3 850
2 TraesCS6D01G402100 chr6D 470725770 470726455 685 False 462 462 79.710 214 867 1 chr6D.!!$F1 653
3 TraesCS6D01G402100 chr6B 720022267 720023704 1437 True 2030 2030 92.345 50 1475 1 chr6B.!!$R3 1425
4 TraesCS6D01G402100 chr6B 719947724 719948587 863 True 701 701 81.954 277 1112 1 chr6B.!!$R2 835
5 TraesCS6D01G402100 chr6A 615620536 615622174 1638 False 1140 1943 89.760 44 1819 2 chr6A.!!$F1 1775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1070 1.334149 GCACGCAAGGAAGAAGAACAC 60.334 52.381 0.0 0.0 46.39 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2222 0.037975 GAGGGCCATTGTTGTTGCAG 60.038 55.0 6.18 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.816640 AGAAACAATAAAATTGAGCGACATTT 57.183 26.923 6.64 0.00 0.00 2.32
26 27 9.906660 AGAAACAATAAAATTGAGCGACATTTA 57.093 25.926 6.64 0.00 0.00 1.40
32 33 9.825972 AATAAAATTGAGCGACATTTATATCCG 57.174 29.630 0.00 0.00 29.23 4.18
33 34 6.861065 AAATTGAGCGACATTTATATCCGT 57.139 33.333 0.00 0.00 0.00 4.69
34 35 5.845985 ATTGAGCGACATTTATATCCGTG 57.154 39.130 0.00 0.00 0.00 4.94
35 36 4.577834 TGAGCGACATTTATATCCGTGA 57.422 40.909 0.00 0.00 0.00 4.35
36 37 4.939271 TGAGCGACATTTATATCCGTGAA 58.061 39.130 0.00 0.00 0.00 3.18
37 38 4.982295 TGAGCGACATTTATATCCGTGAAG 59.018 41.667 0.00 0.00 0.00 3.02
38 39 5.196341 AGCGACATTTATATCCGTGAAGA 57.804 39.130 0.00 0.00 0.00 2.87
39 40 5.223382 AGCGACATTTATATCCGTGAAGAG 58.777 41.667 0.00 0.00 0.00 2.85
40 41 5.009710 AGCGACATTTATATCCGTGAAGAGA 59.990 40.000 0.00 0.00 0.00 3.10
41 42 5.690409 GCGACATTTATATCCGTGAAGAGAA 59.310 40.000 0.00 0.00 0.00 2.87
42 43 6.129062 GCGACATTTATATCCGTGAAGAGAAG 60.129 42.308 0.00 0.00 0.00 2.85
463 520 7.995289 AGAGATGAATATAGGCGAAGAGTATG 58.005 38.462 0.00 0.00 0.00 2.39
753 846 4.574013 GGAAGATATGATTGCGGATCCATC 59.426 45.833 13.41 8.06 33.60 3.51
850 948 9.603298 CATTGATTTTGACGTATCAAGATATGG 57.397 33.333 14.78 2.96 45.54 2.74
919 1018 9.077674 GCATATGAGAACTCTATATAAACACCG 57.922 37.037 6.97 0.00 0.00 4.94
955 1054 3.551496 TTGGCAGGGAAGGAGCACG 62.551 63.158 0.00 0.00 0.00 5.34
971 1070 1.334149 GCACGCAAGGAAGAAGAACAC 60.334 52.381 0.00 0.00 46.39 3.32
976 1075 2.033424 GCAAGGAAGAAGAACACACACC 59.967 50.000 0.00 0.00 0.00 4.16
979 1078 3.744660 AGGAAGAAGAACACACACCATC 58.255 45.455 0.00 0.00 0.00 3.51
980 1079 3.392616 AGGAAGAAGAACACACACCATCT 59.607 43.478 0.00 0.00 0.00 2.90
1037 1136 2.480419 CGAACAACAAGATGAGGACCAC 59.520 50.000 0.00 0.00 0.00 4.16
1098 1197 2.125310 TTACCGTCCTGCCATGCG 60.125 61.111 0.00 0.00 0.00 4.73
1364 1463 0.736325 ATCTAGTGTGCGGCGTTGAC 60.736 55.000 9.37 3.72 0.00 3.18
1439 1538 8.082334 TGTTGTTTTTCTTTCCTTCTTTGTTG 57.918 30.769 0.00 0.00 0.00 3.33
1467 1566 5.148502 ACTTTGAACCTGAGACCTCTCTTA 58.851 41.667 4.00 0.00 43.25 2.10
1475 1574 4.478203 CTGAGACCTCTCTTATGGATGGA 58.522 47.826 4.00 0.00 43.25 3.41
1476 1575 5.085275 TGAGACCTCTCTTATGGATGGAT 57.915 43.478 4.00 0.00 43.25 3.41
1477 1576 4.837298 TGAGACCTCTCTTATGGATGGATG 59.163 45.833 4.00 0.00 43.25 3.51
1478 1577 4.825445 AGACCTCTCTTATGGATGGATGT 58.175 43.478 0.00 0.00 0.00 3.06
1479 1578 5.222870 AGACCTCTCTTATGGATGGATGTT 58.777 41.667 0.00 0.00 0.00 2.71
1480 1579 5.071519 AGACCTCTCTTATGGATGGATGTTG 59.928 44.000 0.00 0.00 0.00 3.33
1481 1580 4.103785 ACCTCTCTTATGGATGGATGTTGG 59.896 45.833 0.00 0.00 0.00 3.77
1482 1581 4.103785 CCTCTCTTATGGATGGATGTTGGT 59.896 45.833 0.00 0.00 0.00 3.67
1483 1582 5.039920 TCTCTTATGGATGGATGTTGGTG 57.960 43.478 0.00 0.00 0.00 4.17
1484 1583 3.554934 TCTTATGGATGGATGTTGGTGC 58.445 45.455 0.00 0.00 0.00 5.01
1485 1584 1.965935 TATGGATGGATGTTGGTGCG 58.034 50.000 0.00 0.00 0.00 5.34
1486 1585 0.752743 ATGGATGGATGTTGGTGCGG 60.753 55.000 0.00 0.00 0.00 5.69
1487 1586 1.378514 GGATGGATGTTGGTGCGGT 60.379 57.895 0.00 0.00 0.00 5.68
1488 1587 0.965363 GGATGGATGTTGGTGCGGTT 60.965 55.000 0.00 0.00 0.00 4.44
1489 1588 0.171007 GATGGATGTTGGTGCGGTTG 59.829 55.000 0.00 0.00 0.00 3.77
1490 1589 1.876497 ATGGATGTTGGTGCGGTTGC 61.876 55.000 0.00 0.00 43.20 4.17
1491 1590 2.268076 GGATGTTGGTGCGGTTGCT 61.268 57.895 0.00 0.00 43.34 3.91
1492 1591 1.659794 GATGTTGGTGCGGTTGCTT 59.340 52.632 0.00 0.00 43.34 3.91
1493 1592 0.031994 GATGTTGGTGCGGTTGCTTT 59.968 50.000 0.00 0.00 43.34 3.51
1494 1593 1.268352 GATGTTGGTGCGGTTGCTTTA 59.732 47.619 0.00 0.00 43.34 1.85
1495 1594 1.323412 TGTTGGTGCGGTTGCTTTAT 58.677 45.000 0.00 0.00 43.34 1.40
1496 1595 2.505405 TGTTGGTGCGGTTGCTTTATA 58.495 42.857 0.00 0.00 43.34 0.98
1497 1596 2.885266 TGTTGGTGCGGTTGCTTTATAA 59.115 40.909 0.00 0.00 43.34 0.98
1498 1597 3.508012 TGTTGGTGCGGTTGCTTTATAAT 59.492 39.130 0.00 0.00 43.34 1.28
1499 1598 4.700692 TGTTGGTGCGGTTGCTTTATAATA 59.299 37.500 0.00 0.00 43.34 0.98
1500 1599 5.358442 TGTTGGTGCGGTTGCTTTATAATAT 59.642 36.000 0.00 0.00 43.34 1.28
1501 1600 6.542735 TGTTGGTGCGGTTGCTTTATAATATA 59.457 34.615 0.00 0.00 43.34 0.86
1502 1601 7.067129 TGTTGGTGCGGTTGCTTTATAATATAA 59.933 33.333 0.00 0.00 43.34 0.98
1503 1602 7.569639 TGGTGCGGTTGCTTTATAATATAAA 57.430 32.000 5.46 5.46 43.34 1.40
1504 1603 7.644490 TGGTGCGGTTGCTTTATAATATAAAG 58.356 34.615 22.11 22.11 43.34 1.85
1512 1611 6.832549 GCTTTATAATATAAAGCGGCGTTG 57.167 37.500 30.20 9.77 46.31 4.10
1513 1612 6.595794 GCTTTATAATATAAAGCGGCGTTGA 58.404 36.000 30.20 0.00 46.31 3.18
1514 1613 7.241376 GCTTTATAATATAAAGCGGCGTTGAT 58.759 34.615 30.20 2.52 46.31 2.57
1515 1614 7.749126 GCTTTATAATATAAAGCGGCGTTGATT 59.251 33.333 30.20 12.10 46.31 2.57
1516 1615 9.607285 CTTTATAATATAAAGCGGCGTTGATTT 57.393 29.630 16.87 7.68 0.00 2.17
1524 1623 8.865590 ATAAAGCGGCGTTGATTTAATTAATT 57.134 26.923 9.37 5.89 33.88 1.40
1532 1631 9.959749 GGCGTTGATTTAATTAATTAATGGAGA 57.040 29.630 18.87 6.61 32.29 3.71
1603 1702 4.695455 TGCTGACTTTCTTGCTTGTATACC 59.305 41.667 0.00 0.00 0.00 2.73
1634 1733 5.590818 TCTTCTCTACCCTATGGTTCAAGT 58.409 41.667 0.00 0.00 44.75 3.16
1654 1756 6.014242 TCAAGTGTCTGAACCATCATTACTCT 60.014 38.462 0.00 0.00 34.37 3.24
1659 1761 6.818644 TGTCTGAACCATCATTACTCTTAAGC 59.181 38.462 0.00 0.00 34.37 3.09
1664 1766 7.665559 TGAACCATCATTACTCTTAAGCAACTT 59.334 33.333 0.00 0.00 0.00 2.66
1665 1767 9.162764 GAACCATCATTACTCTTAAGCAACTTA 57.837 33.333 0.00 0.00 0.00 2.24
1666 1768 9.686683 AACCATCATTACTCTTAAGCAACTTAT 57.313 29.630 0.00 0.00 0.00 1.73
1667 1769 9.331282 ACCATCATTACTCTTAAGCAACTTATC 57.669 33.333 0.00 0.00 0.00 1.75
1668 1770 8.778358 CCATCATTACTCTTAAGCAACTTATCC 58.222 37.037 0.00 0.00 0.00 2.59
1669 1771 9.553064 CATCATTACTCTTAAGCAACTTATCCT 57.447 33.333 0.00 0.00 0.00 3.24
1676 1778 7.287235 ACTCTTAAGCAACTTATCCTATACCGT 59.713 37.037 0.00 0.00 0.00 4.83
1678 1780 7.924412 TCTTAAGCAACTTATCCTATACCGTTG 59.076 37.037 0.00 0.00 35.95 4.10
1687 1789 1.414919 CCTATACCGTTGGCTTGCCTA 59.585 52.381 13.18 2.12 0.00 3.93
1704 1806 1.420378 CTAGCGATCATCTGCAGCAG 58.580 55.000 17.10 17.10 0.00 4.24
1728 1830 5.758784 GCAAAAGAGTGGTTTCTACTGTACT 59.241 40.000 0.00 0.00 0.00 2.73
1734 1836 7.688343 AGAGTGGTTTCTACTGTACTACTAGT 58.312 38.462 0.00 0.00 34.34 2.57
1761 1863 2.158755 AGTCCAGTCCAGTGTTTCCTTG 60.159 50.000 0.00 0.00 0.00 3.61
1764 1866 1.867233 CAGTCCAGTGTTTCCTTGTCG 59.133 52.381 0.00 0.00 0.00 4.35
1781 1883 1.077787 CGGCTGCACCCTAAATCCA 60.078 57.895 0.50 0.00 33.26 3.41
1782 1884 1.097547 CGGCTGCACCCTAAATCCAG 61.098 60.000 0.50 0.00 33.26 3.86
1783 1885 0.753111 GGCTGCACCCTAAATCCAGG 60.753 60.000 0.50 0.00 35.26 4.45
1784 1886 0.034089 GCTGCACCCTAAATCCAGGT 60.034 55.000 0.00 0.00 33.44 4.00
1785 1887 1.616994 GCTGCACCCTAAATCCAGGTT 60.617 52.381 0.00 0.00 33.44 3.50
1786 1888 2.094675 CTGCACCCTAAATCCAGGTTG 58.905 52.381 0.00 0.00 33.44 3.77
1798 1900 1.202927 TCCAGGTTGAGCCAAGGAAAG 60.203 52.381 0.00 0.00 39.67 2.62
1803 1905 2.489722 GGTTGAGCCAAGGAAAGCTAAG 59.510 50.000 0.00 0.00 40.11 2.18
1808 1910 4.286032 TGAGCCAAGGAAAGCTAAGAAGTA 59.714 41.667 0.00 0.00 40.11 2.24
1810 1912 4.287326 AGCCAAGGAAAGCTAAGAAGTACT 59.713 41.667 0.00 0.00 37.64 2.73
1814 1916 5.408880 AGGAAAGCTAAGAAGTACTGGTC 57.591 43.478 0.00 0.00 0.00 4.02
1819 1921 0.179181 TAAGAAGTACTGGTCGCGCG 60.179 55.000 26.76 26.76 0.00 6.86
1820 1922 2.814183 AAGAAGTACTGGTCGCGCGG 62.814 60.000 31.69 16.53 0.00 6.46
1836 1938 3.942439 GGCGCCATCCTACCCCTC 61.942 72.222 24.80 0.00 0.00 4.30
1837 1939 3.942439 GCGCCATCCTACCCCTCC 61.942 72.222 0.00 0.00 0.00 4.30
1838 1940 3.616721 CGCCATCCTACCCCTCCG 61.617 72.222 0.00 0.00 0.00 4.63
1839 1941 3.242291 GCCATCCTACCCCTCCGG 61.242 72.222 0.00 0.00 37.81 5.14
1841 1943 1.837499 CCATCCTACCCCTCCGGTC 60.837 68.421 0.00 0.00 43.58 4.79
1842 1944 1.837499 CATCCTACCCCTCCGGTCC 60.837 68.421 0.00 0.00 43.58 4.46
1843 1945 2.330209 ATCCTACCCCTCCGGTCCA 61.330 63.158 0.00 0.00 43.58 4.02
1844 1946 1.893588 ATCCTACCCCTCCGGTCCAA 61.894 60.000 0.00 0.00 43.58 3.53
1845 1947 2.064581 CCTACCCCTCCGGTCCAAG 61.065 68.421 0.00 0.00 43.58 3.61
1846 1948 2.686106 TACCCCTCCGGTCCAAGC 60.686 66.667 0.00 0.00 43.58 4.01
1847 1949 3.549433 TACCCCTCCGGTCCAAGCA 62.549 63.158 0.00 0.00 43.58 3.91
1848 1950 4.410400 CCCCTCCGGTCCAAGCAC 62.410 72.222 0.00 0.00 0.00 4.40
1849 1951 3.636231 CCCTCCGGTCCAAGCACA 61.636 66.667 0.00 0.00 0.00 4.57
1850 1952 2.358737 CCTCCGGTCCAAGCACAC 60.359 66.667 0.00 0.00 0.00 3.82
1851 1953 2.738521 CTCCGGTCCAAGCACACG 60.739 66.667 0.00 0.00 0.00 4.49
1852 1954 4.980805 TCCGGTCCAAGCACACGC 62.981 66.667 0.00 0.00 38.99 5.34
1854 1956 3.049674 CGGTCCAAGCACACGCAT 61.050 61.111 0.00 0.00 42.27 4.73
1855 1957 2.562912 GGTCCAAGCACACGCATG 59.437 61.111 0.00 0.00 42.27 4.06
1859 1961 2.174107 CAAGCACACGCATGGACG 59.826 61.111 0.00 0.00 42.27 4.79
1861 1963 1.005512 AAGCACACGCATGGACGTA 60.006 52.632 0.00 0.00 46.34 3.57
1862 1964 1.289109 AAGCACACGCATGGACGTAC 61.289 55.000 0.00 0.00 46.34 3.67
1863 1965 2.736682 GCACACGCATGGACGTACC 61.737 63.158 0.00 0.00 46.34 3.34
1864 1966 2.126228 ACACGCATGGACGTACCG 60.126 61.111 0.00 0.00 46.34 4.02
1865 1967 2.179767 CACGCATGGACGTACCGA 59.820 61.111 1.77 0.00 46.34 4.69
1866 1968 2.156446 CACGCATGGACGTACCGAC 61.156 63.158 1.77 0.00 46.34 4.79
1867 1969 2.338015 ACGCATGGACGTACCGACT 61.338 57.895 1.77 0.00 46.19 4.18
1868 1970 1.585521 CGCATGGACGTACCGACTC 60.586 63.158 0.00 0.00 42.61 3.36
1869 1971 1.226888 GCATGGACGTACCGACTCC 60.227 63.158 0.00 0.00 42.61 3.85
1870 1972 1.940883 GCATGGACGTACCGACTCCA 61.941 60.000 0.00 0.00 42.61 3.86
1871 1973 0.744874 CATGGACGTACCGACTCCAT 59.255 55.000 0.00 0.00 40.93 3.41
1872 1974 0.744874 ATGGACGTACCGACTCCATG 59.255 55.000 7.67 0.00 39.82 3.66
1873 1975 1.226888 GGACGTACCGACTCCATGC 60.227 63.158 0.00 0.00 0.00 4.06
1874 1976 1.226888 GACGTACCGACTCCATGCC 60.227 63.158 0.00 0.00 0.00 4.40
1875 1977 1.664321 GACGTACCGACTCCATGCCT 61.664 60.000 0.00 0.00 0.00 4.75
1876 1978 1.065928 CGTACCGACTCCATGCCTC 59.934 63.158 0.00 0.00 0.00 4.70
1877 1979 1.442148 GTACCGACTCCATGCCTCC 59.558 63.158 0.00 0.00 0.00 4.30
1878 1980 1.043673 GTACCGACTCCATGCCTCCT 61.044 60.000 0.00 0.00 0.00 3.69
1879 1981 0.755698 TACCGACTCCATGCCTCCTC 60.756 60.000 0.00 0.00 0.00 3.71
1880 1982 2.801631 CCGACTCCATGCCTCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
1881 1983 1.760086 CGACTCCATGCCTCCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
1882 1984 1.828768 GACTCCATGCCTCCTCCTG 59.171 63.158 0.00 0.00 0.00 3.86
1883 1985 2.322638 GACTCCATGCCTCCTCCTGC 62.323 65.000 0.00 0.00 0.00 4.85
1884 1986 2.041762 TCCATGCCTCCTCCTGCT 59.958 61.111 0.00 0.00 0.00 4.24
1885 1987 2.042404 CTCCATGCCTCCTCCTGCTC 62.042 65.000 0.00 0.00 0.00 4.26
1886 1988 2.071262 CCATGCCTCCTCCTGCTCT 61.071 63.158 0.00 0.00 0.00 4.09
1887 1989 1.146485 CATGCCTCCTCCTGCTCTG 59.854 63.158 0.00 0.00 0.00 3.35
1888 1990 2.744243 ATGCCTCCTCCTGCTCTGC 61.744 63.158 0.00 0.00 0.00 4.26
1889 1991 4.173924 GCCTCCTCCTGCTCTGCC 62.174 72.222 0.00 0.00 0.00 4.85
1890 1992 2.686470 CCTCCTCCTGCTCTGCCA 60.686 66.667 0.00 0.00 0.00 4.92
1891 1993 2.583520 CTCCTCCTGCTCTGCCAC 59.416 66.667 0.00 0.00 0.00 5.01
1892 1994 1.988956 CTCCTCCTGCTCTGCCACT 60.989 63.158 0.00 0.00 0.00 4.00
1893 1995 1.537397 TCCTCCTGCTCTGCCACTT 60.537 57.895 0.00 0.00 0.00 3.16
1894 1996 1.078567 CCTCCTGCTCTGCCACTTC 60.079 63.158 0.00 0.00 0.00 3.01
1895 1997 1.447489 CTCCTGCTCTGCCACTTCG 60.447 63.158 0.00 0.00 0.00 3.79
1896 1998 3.123620 CCTGCTCTGCCACTTCGC 61.124 66.667 0.00 0.00 0.00 4.70
1897 1999 3.123620 CTGCTCTGCCACTTCGCC 61.124 66.667 0.00 0.00 0.00 5.54
1898 2000 4.704833 TGCTCTGCCACTTCGCCC 62.705 66.667 0.00 0.00 0.00 6.13
1900 2002 4.020617 CTCTGCCACTTCGCCCCA 62.021 66.667 0.00 0.00 0.00 4.96
1901 2003 4.329545 TCTGCCACTTCGCCCCAC 62.330 66.667 0.00 0.00 0.00 4.61
1902 2004 4.641645 CTGCCACTTCGCCCCACA 62.642 66.667 0.00 0.00 0.00 4.17
1903 2005 4.947147 TGCCACTTCGCCCCACAC 62.947 66.667 0.00 0.00 0.00 3.82
1916 2018 4.293648 CACACCGCCCGTCAGTCA 62.294 66.667 0.00 0.00 0.00 3.41
1917 2019 4.295119 ACACCGCCCGTCAGTCAC 62.295 66.667 0.00 0.00 0.00 3.67
1947 2049 4.825422 CTCCACTAGCAAGAAATGACTGA 58.175 43.478 0.00 0.00 0.00 3.41
1948 2050 5.426504 CTCCACTAGCAAGAAATGACTGAT 58.573 41.667 0.00 0.00 0.00 2.90
1949 2051 5.181009 TCCACTAGCAAGAAATGACTGATG 58.819 41.667 0.00 0.00 0.00 3.07
1950 2052 4.334759 CCACTAGCAAGAAATGACTGATGG 59.665 45.833 0.00 0.00 0.00 3.51
1951 2053 5.181009 CACTAGCAAGAAATGACTGATGGA 58.819 41.667 0.00 0.00 0.00 3.41
1952 2054 5.821470 CACTAGCAAGAAATGACTGATGGAT 59.179 40.000 0.00 0.00 0.00 3.41
1953 2055 5.821470 ACTAGCAAGAAATGACTGATGGATG 59.179 40.000 0.00 0.00 0.00 3.51
1954 2056 3.952323 AGCAAGAAATGACTGATGGATGG 59.048 43.478 0.00 0.00 0.00 3.51
1955 2057 3.067742 GCAAGAAATGACTGATGGATGGG 59.932 47.826 0.00 0.00 0.00 4.00
1956 2058 3.589951 AGAAATGACTGATGGATGGGG 57.410 47.619 0.00 0.00 0.00 4.96
1957 2059 2.854967 AGAAATGACTGATGGATGGGGT 59.145 45.455 0.00 0.00 0.00 4.95
1958 2060 4.047166 AGAAATGACTGATGGATGGGGTA 58.953 43.478 0.00 0.00 0.00 3.69
1959 2061 4.103785 AGAAATGACTGATGGATGGGGTAG 59.896 45.833 0.00 0.00 0.00 3.18
1960 2062 1.806496 TGACTGATGGATGGGGTAGG 58.194 55.000 0.00 0.00 0.00 3.18
1961 2063 1.293763 TGACTGATGGATGGGGTAGGA 59.706 52.381 0.00 0.00 0.00 2.94
1962 2064 1.974236 GACTGATGGATGGGGTAGGAG 59.026 57.143 0.00 0.00 0.00 3.69
1963 2065 1.295292 ACTGATGGATGGGGTAGGAGT 59.705 52.381 0.00 0.00 0.00 3.85
1964 2066 2.522705 ACTGATGGATGGGGTAGGAGTA 59.477 50.000 0.00 0.00 0.00 2.59
1965 2067 3.169099 CTGATGGATGGGGTAGGAGTAG 58.831 54.545 0.00 0.00 0.00 2.57
1966 2068 2.158158 TGATGGATGGGGTAGGAGTAGG 60.158 54.545 0.00 0.00 0.00 3.18
1967 2069 1.627847 TGGATGGGGTAGGAGTAGGA 58.372 55.000 0.00 0.00 0.00 2.94
1968 2070 2.161624 TGGATGGGGTAGGAGTAGGAT 58.838 52.381 0.00 0.00 0.00 3.24
1969 2071 3.351694 TGGATGGGGTAGGAGTAGGATA 58.648 50.000 0.00 0.00 0.00 2.59
1970 2072 3.735984 TGGATGGGGTAGGAGTAGGATAA 59.264 47.826 0.00 0.00 0.00 1.75
1971 2073 4.173244 TGGATGGGGTAGGAGTAGGATAAA 59.827 45.833 0.00 0.00 0.00 1.40
1972 2074 4.778427 GGATGGGGTAGGAGTAGGATAAAG 59.222 50.000 0.00 0.00 0.00 1.85
1973 2075 3.584294 TGGGGTAGGAGTAGGATAAAGC 58.416 50.000 0.00 0.00 0.00 3.51
1974 2076 3.209152 TGGGGTAGGAGTAGGATAAAGCT 59.791 47.826 0.00 0.00 0.00 3.74
1975 2077 4.421231 TGGGGTAGGAGTAGGATAAAGCTA 59.579 45.833 0.00 0.00 0.00 3.32
1976 2078 5.102956 TGGGGTAGGAGTAGGATAAAGCTAA 60.103 44.000 0.00 0.00 0.00 3.09
1977 2079 5.842874 GGGGTAGGAGTAGGATAAAGCTAAA 59.157 44.000 0.00 0.00 0.00 1.85
1978 2080 6.014413 GGGGTAGGAGTAGGATAAAGCTAAAG 60.014 46.154 0.00 0.00 0.00 1.85
1979 2081 6.781507 GGGTAGGAGTAGGATAAAGCTAAAGA 59.218 42.308 0.00 0.00 0.00 2.52
1980 2082 7.455323 GGGTAGGAGTAGGATAAAGCTAAAGAT 59.545 40.741 0.00 0.00 0.00 2.40
1981 2083 9.531158 GGTAGGAGTAGGATAAAGCTAAAGATA 57.469 37.037 0.00 0.00 0.00 1.98
1985 2087 9.157104 GGAGTAGGATAAAGCTAAAGATAATGC 57.843 37.037 0.00 0.00 0.00 3.56
1986 2088 8.764524 AGTAGGATAAAGCTAAAGATAATGCG 57.235 34.615 0.00 0.00 0.00 4.73
1987 2089 8.368668 AGTAGGATAAAGCTAAAGATAATGCGT 58.631 33.333 0.00 0.00 0.00 5.24
1988 2090 7.426929 AGGATAAAGCTAAAGATAATGCGTG 57.573 36.000 0.00 0.00 0.00 5.34
1989 2091 6.992715 AGGATAAAGCTAAAGATAATGCGTGT 59.007 34.615 0.00 0.00 0.00 4.49
1990 2092 7.041780 AGGATAAAGCTAAAGATAATGCGTGTG 60.042 37.037 0.00 0.00 0.00 3.82
1991 2093 4.882671 AAGCTAAAGATAATGCGTGTGG 57.117 40.909 0.00 0.00 0.00 4.17
1992 2094 3.206150 AGCTAAAGATAATGCGTGTGGG 58.794 45.455 0.00 0.00 0.00 4.61
1993 2095 2.290641 GCTAAAGATAATGCGTGTGGGG 59.709 50.000 0.00 0.00 0.00 4.96
1994 2096 1.102978 AAAGATAATGCGTGTGGGGC 58.897 50.000 0.00 0.00 0.00 5.80
1995 2097 1.095228 AAGATAATGCGTGTGGGGCG 61.095 55.000 0.00 0.00 0.00 6.13
1996 2098 1.817941 GATAATGCGTGTGGGGCGT 60.818 57.895 0.00 0.00 0.00 5.68
1997 2099 2.047151 GATAATGCGTGTGGGGCGTG 62.047 60.000 0.00 0.00 0.00 5.34
1998 2100 2.529454 ATAATGCGTGTGGGGCGTGA 62.529 55.000 0.00 0.00 0.00 4.35
1999 2101 2.529454 TAATGCGTGTGGGGCGTGAT 62.529 55.000 0.00 0.00 0.00 3.06
2002 2104 2.125147 CGTGTGGGGCGTGATGAT 60.125 61.111 0.00 0.00 0.00 2.45
2003 2105 1.142965 CGTGTGGGGCGTGATGATA 59.857 57.895 0.00 0.00 0.00 2.15
2004 2106 0.875908 CGTGTGGGGCGTGATGATAG 60.876 60.000 0.00 0.00 0.00 2.08
2005 2107 0.178068 GTGTGGGGCGTGATGATAGT 59.822 55.000 0.00 0.00 0.00 2.12
2006 2108 0.177836 TGTGGGGCGTGATGATAGTG 59.822 55.000 0.00 0.00 0.00 2.74
2007 2109 1.146041 TGGGGCGTGATGATAGTGC 59.854 57.895 0.00 0.00 0.00 4.40
2008 2110 1.146041 GGGGCGTGATGATAGTGCA 59.854 57.895 0.00 0.00 0.00 4.57
2009 2111 0.882042 GGGGCGTGATGATAGTGCAG 60.882 60.000 0.00 0.00 0.00 4.41
2010 2112 1.502163 GGGCGTGATGATAGTGCAGC 61.502 60.000 0.00 0.00 0.00 5.25
2011 2113 0.531532 GGCGTGATGATAGTGCAGCT 60.532 55.000 0.00 0.00 0.00 4.24
2012 2114 0.857935 GCGTGATGATAGTGCAGCTC 59.142 55.000 0.00 0.00 0.00 4.09
2013 2115 1.803998 GCGTGATGATAGTGCAGCTCA 60.804 52.381 0.00 0.00 0.00 4.26
2014 2116 2.543641 CGTGATGATAGTGCAGCTCAA 58.456 47.619 0.00 0.00 0.00 3.02
2015 2117 2.931969 CGTGATGATAGTGCAGCTCAAA 59.068 45.455 0.00 0.00 0.00 2.69
2016 2118 3.001026 CGTGATGATAGTGCAGCTCAAAG 59.999 47.826 0.00 0.00 0.00 2.77
2017 2119 2.941064 TGATGATAGTGCAGCTCAAAGC 59.059 45.455 0.00 0.00 42.84 3.51
2026 2128 4.921834 GCTCAAAGCTAGCGACCT 57.078 55.556 9.55 0.00 38.45 3.85
2028 2130 1.562017 GCTCAAAGCTAGCGACCTAC 58.438 55.000 9.55 0.00 38.45 3.18
2029 2131 1.135083 GCTCAAAGCTAGCGACCTACA 60.135 52.381 9.55 0.00 38.45 2.74
2030 2132 2.674177 GCTCAAAGCTAGCGACCTACAA 60.674 50.000 9.55 0.00 38.45 2.41
2031 2133 3.585862 CTCAAAGCTAGCGACCTACAAA 58.414 45.455 9.55 0.00 0.00 2.83
2032 2134 3.323243 TCAAAGCTAGCGACCTACAAAC 58.677 45.455 9.55 0.00 0.00 2.93
2033 2135 2.381725 AAGCTAGCGACCTACAAACC 57.618 50.000 9.55 0.00 0.00 3.27
2034 2136 0.535797 AGCTAGCGACCTACAAACCC 59.464 55.000 9.55 0.00 0.00 4.11
2035 2137 0.248289 GCTAGCGACCTACAAACCCA 59.752 55.000 0.00 0.00 0.00 4.51
2036 2138 1.739371 GCTAGCGACCTACAAACCCAG 60.739 57.143 0.00 0.00 0.00 4.45
2037 2139 1.549170 CTAGCGACCTACAAACCCAGT 59.451 52.381 0.00 0.00 0.00 4.00
2038 2140 0.763035 AGCGACCTACAAACCCAGTT 59.237 50.000 0.00 0.00 0.00 3.16
2039 2141 1.972795 AGCGACCTACAAACCCAGTTA 59.027 47.619 0.00 0.00 0.00 2.24
2040 2142 2.570302 AGCGACCTACAAACCCAGTTAT 59.430 45.455 0.00 0.00 0.00 1.89
2041 2143 3.008704 AGCGACCTACAAACCCAGTTATT 59.991 43.478 0.00 0.00 0.00 1.40
2042 2144 3.126343 GCGACCTACAAACCCAGTTATTG 59.874 47.826 0.00 0.00 0.00 1.90
2043 2145 4.571919 CGACCTACAAACCCAGTTATTGA 58.428 43.478 0.00 0.00 0.00 2.57
2044 2146 5.183228 CGACCTACAAACCCAGTTATTGAT 58.817 41.667 0.00 0.00 0.00 2.57
2045 2147 5.293569 CGACCTACAAACCCAGTTATTGATC 59.706 44.000 0.00 0.00 0.00 2.92
2046 2148 6.134535 ACCTACAAACCCAGTTATTGATCA 57.865 37.500 0.00 0.00 0.00 2.92
2047 2149 6.548321 ACCTACAAACCCAGTTATTGATCAA 58.452 36.000 11.26 11.26 0.00 2.57
2048 2150 7.007723 ACCTACAAACCCAGTTATTGATCAAA 58.992 34.615 13.09 0.00 0.00 2.69
2049 2151 7.673926 ACCTACAAACCCAGTTATTGATCAAAT 59.326 33.333 13.09 4.08 0.00 2.32
2050 2152 8.190784 CCTACAAACCCAGTTATTGATCAAATC 58.809 37.037 13.09 6.05 0.00 2.17
2051 2153 6.935167 ACAAACCCAGTTATTGATCAAATCC 58.065 36.000 13.09 2.98 0.00 3.01
2052 2154 6.725834 ACAAACCCAGTTATTGATCAAATCCT 59.274 34.615 13.09 5.33 0.00 3.24
2053 2155 7.235399 ACAAACCCAGTTATTGATCAAATCCTT 59.765 33.333 13.09 0.00 0.00 3.36
2054 2156 6.780457 ACCCAGTTATTGATCAAATCCTTG 57.220 37.500 13.09 7.63 0.00 3.61
2055 2157 5.127682 ACCCAGTTATTGATCAAATCCTTGC 59.872 40.000 13.09 0.00 32.14 4.01
2056 2158 5.361857 CCCAGTTATTGATCAAATCCTTGCT 59.638 40.000 13.09 1.75 32.14 3.91
2057 2159 6.547141 CCCAGTTATTGATCAAATCCTTGCTA 59.453 38.462 13.09 0.00 32.14 3.49
2058 2160 7.255381 CCCAGTTATTGATCAAATCCTTGCTAG 60.255 40.741 13.09 0.00 32.14 3.42
2059 2161 7.500227 CCAGTTATTGATCAAATCCTTGCTAGA 59.500 37.037 13.09 0.00 32.14 2.43
2060 2162 9.064706 CAGTTATTGATCAAATCCTTGCTAGAT 57.935 33.333 13.09 0.00 32.14 1.98
2065 2167 7.846101 TGATCAAATCCTTGCTAGATAGAGA 57.154 36.000 0.00 0.00 32.14 3.10
2066 2168 8.433249 TGATCAAATCCTTGCTAGATAGAGAT 57.567 34.615 0.00 0.00 32.14 2.75
2067 2169 8.312564 TGATCAAATCCTTGCTAGATAGAGATG 58.687 37.037 0.00 0.00 32.14 2.90
2068 2170 7.002250 TCAAATCCTTGCTAGATAGAGATGG 57.998 40.000 0.00 0.00 32.14 3.51
2069 2171 6.784473 TCAAATCCTTGCTAGATAGAGATGGA 59.216 38.462 0.00 0.00 32.14 3.41
2070 2172 7.457218 TCAAATCCTTGCTAGATAGAGATGGAT 59.543 37.037 0.00 0.00 33.75 3.41
2071 2173 6.795144 ATCCTTGCTAGATAGAGATGGATG 57.205 41.667 0.00 0.00 31.49 3.51
2072 2174 5.649265 TCCTTGCTAGATAGAGATGGATGT 58.351 41.667 0.00 0.00 0.00 3.06
2073 2175 5.479724 TCCTTGCTAGATAGAGATGGATGTG 59.520 44.000 0.00 0.00 0.00 3.21
2074 2176 5.479724 CCTTGCTAGATAGAGATGGATGTGA 59.520 44.000 0.00 0.00 0.00 3.58
2075 2177 6.154877 CCTTGCTAGATAGAGATGGATGTGAT 59.845 42.308 0.00 0.00 0.00 3.06
2076 2178 6.772360 TGCTAGATAGAGATGGATGTGATC 57.228 41.667 0.00 0.00 0.00 2.92
2077 2179 6.492274 TGCTAGATAGAGATGGATGTGATCT 58.508 40.000 0.00 0.00 32.63 2.75
2078 2180 6.602803 TGCTAGATAGAGATGGATGTGATCTC 59.397 42.308 0.00 0.00 44.29 2.75
2083 2185 4.255833 GAGATGGATGTGATCTCTGTCC 57.744 50.000 0.00 10.81 41.80 4.02
2084 2186 2.971330 AGATGGATGTGATCTCTGTCCC 59.029 50.000 13.55 4.02 0.00 4.46
2085 2187 2.557555 TGGATGTGATCTCTGTCCCT 57.442 50.000 13.55 0.00 0.00 4.20
2086 2188 2.392662 TGGATGTGATCTCTGTCCCTC 58.607 52.381 13.55 0.00 0.00 4.30
2087 2189 1.339610 GGATGTGATCTCTGTCCCTCG 59.660 57.143 0.00 0.00 0.00 4.63
2088 2190 2.302260 GATGTGATCTCTGTCCCTCGA 58.698 52.381 0.00 0.00 0.00 4.04
2089 2191 1.464734 TGTGATCTCTGTCCCTCGAC 58.535 55.000 0.00 0.00 39.66 4.20
2090 2192 0.741915 GTGATCTCTGTCCCTCGACC 59.258 60.000 0.00 0.00 38.32 4.79
2091 2193 0.626382 TGATCTCTGTCCCTCGACCT 59.374 55.000 0.00 0.00 38.32 3.85
2092 2194 1.844497 TGATCTCTGTCCCTCGACCTA 59.156 52.381 0.00 0.00 38.32 3.08
2093 2195 2.223745 GATCTCTGTCCCTCGACCTAC 58.776 57.143 0.00 0.00 38.32 3.18
2094 2196 1.287217 TCTCTGTCCCTCGACCTACT 58.713 55.000 0.00 0.00 38.32 2.57
2095 2197 2.475155 TCTCTGTCCCTCGACCTACTA 58.525 52.381 0.00 0.00 38.32 1.82
2096 2198 3.047115 TCTCTGTCCCTCGACCTACTAT 58.953 50.000 0.00 0.00 38.32 2.12
2097 2199 3.142951 CTCTGTCCCTCGACCTACTATG 58.857 54.545 0.00 0.00 38.32 2.23
2098 2200 2.775960 TCTGTCCCTCGACCTACTATGA 59.224 50.000 0.00 0.00 38.32 2.15
2099 2201 2.879646 CTGTCCCTCGACCTACTATGAC 59.120 54.545 0.00 0.00 38.32 3.06
2100 2202 2.228925 GTCCCTCGACCTACTATGACC 58.771 57.143 0.00 0.00 32.40 4.02
2101 2203 1.848388 TCCCTCGACCTACTATGACCA 59.152 52.381 0.00 0.00 0.00 4.02
2102 2204 2.158652 TCCCTCGACCTACTATGACCAG 60.159 54.545 0.00 0.00 0.00 4.00
2103 2205 2.158652 CCCTCGACCTACTATGACCAGA 60.159 54.545 0.00 0.00 0.00 3.86
2104 2206 2.879646 CCTCGACCTACTATGACCAGAC 59.120 54.545 0.00 0.00 0.00 3.51
2105 2207 3.542648 CTCGACCTACTATGACCAGACA 58.457 50.000 0.00 0.00 0.00 3.41
2106 2208 3.945921 CTCGACCTACTATGACCAGACAA 59.054 47.826 0.00 0.00 0.00 3.18
2107 2209 4.338012 TCGACCTACTATGACCAGACAAA 58.662 43.478 0.00 0.00 0.00 2.83
2108 2210 4.954202 TCGACCTACTATGACCAGACAAAT 59.046 41.667 0.00 0.00 0.00 2.32
2109 2211 6.124340 TCGACCTACTATGACCAGACAAATA 58.876 40.000 0.00 0.00 0.00 1.40
2110 2212 6.604396 TCGACCTACTATGACCAGACAAATAA 59.396 38.462 0.00 0.00 0.00 1.40
2111 2213 6.918569 CGACCTACTATGACCAGACAAATAAG 59.081 42.308 0.00 0.00 0.00 1.73
2112 2214 6.583562 ACCTACTATGACCAGACAAATAAGC 58.416 40.000 0.00 0.00 0.00 3.09
2113 2215 5.992217 CCTACTATGACCAGACAAATAAGCC 59.008 44.000 0.00 0.00 0.00 4.35
2114 2216 5.700402 ACTATGACCAGACAAATAAGCCT 57.300 39.130 0.00 0.00 0.00 4.58
2115 2217 6.808321 ACTATGACCAGACAAATAAGCCTA 57.192 37.500 0.00 0.00 0.00 3.93
2116 2218 6.821388 ACTATGACCAGACAAATAAGCCTAG 58.179 40.000 0.00 0.00 0.00 3.02
2117 2219 3.873910 TGACCAGACAAATAAGCCTAGC 58.126 45.455 0.00 0.00 0.00 3.42
2118 2220 3.206964 GACCAGACAAATAAGCCTAGCC 58.793 50.000 0.00 0.00 0.00 3.93
2119 2221 2.576191 ACCAGACAAATAAGCCTAGCCA 59.424 45.455 0.00 0.00 0.00 4.75
2120 2222 2.945668 CCAGACAAATAAGCCTAGCCAC 59.054 50.000 0.00 0.00 0.00 5.01
2121 2223 3.370953 CCAGACAAATAAGCCTAGCCACT 60.371 47.826 0.00 0.00 0.00 4.00
2122 2224 3.624861 CAGACAAATAAGCCTAGCCACTG 59.375 47.826 0.00 0.00 0.00 3.66
2123 2225 2.356069 GACAAATAAGCCTAGCCACTGC 59.644 50.000 0.00 0.00 37.95 4.40
2124 2226 2.290896 ACAAATAAGCCTAGCCACTGCA 60.291 45.455 0.00 0.00 41.13 4.41
2125 2227 2.754552 CAAATAAGCCTAGCCACTGCAA 59.245 45.455 0.00 0.00 41.13 4.08
2126 2228 2.044123 ATAAGCCTAGCCACTGCAAC 57.956 50.000 0.00 0.00 41.13 4.17
2127 2229 0.690192 TAAGCCTAGCCACTGCAACA 59.310 50.000 0.00 0.00 41.13 3.33
2128 2230 0.178992 AAGCCTAGCCACTGCAACAA 60.179 50.000 0.00 0.00 41.13 2.83
2129 2231 0.890996 AGCCTAGCCACTGCAACAAC 60.891 55.000 0.00 0.00 41.13 3.32
2130 2232 1.172180 GCCTAGCCACTGCAACAACA 61.172 55.000 0.00 0.00 41.13 3.33
2131 2233 1.317613 CCTAGCCACTGCAACAACAA 58.682 50.000 0.00 0.00 41.13 2.83
2132 2234 1.888512 CCTAGCCACTGCAACAACAAT 59.111 47.619 0.00 0.00 41.13 2.71
2133 2235 2.352030 CCTAGCCACTGCAACAACAATG 60.352 50.000 0.00 0.00 41.13 2.82
2134 2236 0.390124 AGCCACTGCAACAACAATGG 59.610 50.000 0.00 0.00 41.13 3.16
2135 2237 1.223417 GCCACTGCAACAACAATGGC 61.223 55.000 0.88 0.88 45.26 4.40
2136 2238 0.600782 CCACTGCAACAACAATGGCC 60.601 55.000 0.00 0.00 0.00 5.36
2137 2239 0.600782 CACTGCAACAACAATGGCCC 60.601 55.000 0.00 0.00 0.00 5.80
2138 2240 0.760189 ACTGCAACAACAATGGCCCT 60.760 50.000 0.00 0.00 0.00 5.19
2139 2241 0.037975 CTGCAACAACAATGGCCCTC 60.038 55.000 0.00 0.00 0.00 4.30
2140 2242 1.293179 GCAACAACAATGGCCCTCC 59.707 57.895 0.00 0.00 0.00 4.30
2141 2243 1.187567 GCAACAACAATGGCCCTCCT 61.188 55.000 0.00 0.00 0.00 3.69
2142 2244 0.890683 CAACAACAATGGCCCTCCTC 59.109 55.000 0.00 0.00 0.00 3.71
2143 2245 0.609131 AACAACAATGGCCCTCCTCG 60.609 55.000 0.00 0.00 0.00 4.63
2144 2246 2.044946 AACAATGGCCCTCCTCGC 60.045 61.111 0.00 0.00 0.00 5.03
2146 2248 4.883354 CAATGGCCCTCCTCGCCC 62.883 72.222 0.00 0.00 46.48 6.13
2154 2256 3.710722 CTCCTCGCCCACAGCCTT 61.711 66.667 0.00 0.00 38.78 4.35
2155 2257 3.672295 CTCCTCGCCCACAGCCTTC 62.672 68.421 0.00 0.00 38.78 3.46
2156 2258 4.785453 CCTCGCCCACAGCCTTCC 62.785 72.222 0.00 0.00 38.78 3.46
2157 2259 4.020617 CTCGCCCACAGCCTTCCA 62.021 66.667 0.00 0.00 38.78 3.53
2158 2260 3.551496 CTCGCCCACAGCCTTCCAA 62.551 63.158 0.00 0.00 38.78 3.53
2159 2261 2.597217 CGCCCACAGCCTTCCAAA 60.597 61.111 0.00 0.00 38.78 3.28
2160 2262 2.629656 CGCCCACAGCCTTCCAAAG 61.630 63.158 0.00 0.00 38.78 2.77
2168 2270 4.002797 CCTTCCAAAGGGCGAAGG 57.997 61.111 4.11 4.11 46.83 3.46
2169 2271 4.002797 CTTCCAAAGGGCGAAGGG 57.997 61.111 0.00 0.00 33.34 3.95
2170 2272 2.282887 TTCCAAAGGGCGAAGGGC 60.283 61.111 0.00 0.00 42.51 5.19
2182 2284 3.422417 GCGAAGGGCCTTTAAGAAATC 57.578 47.619 21.92 3.67 34.80 2.17
2183 2285 2.752903 GCGAAGGGCCTTTAAGAAATCA 59.247 45.455 21.92 0.00 34.80 2.57
2184 2286 3.192633 GCGAAGGGCCTTTAAGAAATCAA 59.807 43.478 21.92 0.00 34.80 2.57
2185 2287 4.142160 GCGAAGGGCCTTTAAGAAATCAAT 60.142 41.667 21.92 0.00 34.80 2.57
2186 2288 5.624509 GCGAAGGGCCTTTAAGAAATCAATT 60.625 40.000 21.92 0.00 34.80 2.32
2187 2289 6.398095 CGAAGGGCCTTTAAGAAATCAATTT 58.602 36.000 21.92 0.00 0.00 1.82
2188 2290 6.873605 CGAAGGGCCTTTAAGAAATCAATTTT 59.126 34.615 21.92 0.00 0.00 1.82
2189 2291 7.387673 CGAAGGGCCTTTAAGAAATCAATTTTT 59.612 33.333 21.92 0.00 0.00 1.94
2237 2339 8.806177 ATATGTATGTATTTAACGAAGACGCA 57.194 30.769 0.00 0.00 43.96 5.24
2238 2340 7.709269 ATGTATGTATTTAACGAAGACGCAT 57.291 32.000 0.00 0.00 43.96 4.73
2239 2341 6.928820 TGTATGTATTTAACGAAGACGCATG 58.071 36.000 0.00 0.00 43.96 4.06
2240 2342 6.532302 TGTATGTATTTAACGAAGACGCATGT 59.468 34.615 0.00 0.00 43.96 3.21
2241 2343 5.198116 TGTATTTAACGAAGACGCATGTG 57.802 39.130 4.30 4.30 43.96 3.21
2242 2344 3.740044 ATTTAACGAAGACGCATGTGG 57.260 42.857 11.65 0.00 43.96 4.17
2243 2345 2.442212 TTAACGAAGACGCATGTGGA 57.558 45.000 11.65 0.00 43.96 4.02
2244 2346 1.990799 TAACGAAGACGCATGTGGAG 58.009 50.000 11.65 0.00 43.96 3.86
2245 2347 1.291877 AACGAAGACGCATGTGGAGC 61.292 55.000 11.65 0.00 43.96 4.70
2246 2348 1.446792 CGAAGACGCATGTGGAGCT 60.447 57.895 11.65 2.03 0.00 4.09
2247 2349 1.016130 CGAAGACGCATGTGGAGCTT 61.016 55.000 11.65 10.64 0.00 3.74
2248 2350 1.735700 CGAAGACGCATGTGGAGCTTA 60.736 52.381 11.65 0.00 0.00 3.09
2249 2351 2.346803 GAAGACGCATGTGGAGCTTAA 58.653 47.619 11.65 0.00 0.00 1.85
2250 2352 2.472695 AGACGCATGTGGAGCTTAAA 57.527 45.000 11.65 0.00 0.00 1.52
2251 2353 2.991250 AGACGCATGTGGAGCTTAAAT 58.009 42.857 11.65 0.00 0.00 1.40
2252 2354 2.679837 AGACGCATGTGGAGCTTAAATG 59.320 45.455 11.65 0.00 0.00 2.32
2253 2355 1.745087 ACGCATGTGGAGCTTAAATGG 59.255 47.619 11.65 0.00 0.00 3.16
2254 2356 1.066002 CGCATGTGGAGCTTAAATGGG 59.934 52.381 0.00 0.00 0.00 4.00
2255 2357 1.202452 GCATGTGGAGCTTAAATGGGC 60.202 52.381 0.00 0.00 0.00 5.36
2256 2358 2.381911 CATGTGGAGCTTAAATGGGCT 58.618 47.619 0.00 0.00 41.88 5.19
2261 2363 2.717639 GAGCTTAAATGGGCTCCAGA 57.282 50.000 3.62 0.00 46.32 3.86
2262 2364 3.220674 GAGCTTAAATGGGCTCCAGAT 57.779 47.619 3.62 0.00 46.32 2.90
2263 2365 4.357918 GAGCTTAAATGGGCTCCAGATA 57.642 45.455 3.62 0.00 46.32 1.98
2264 2366 4.068599 GAGCTTAAATGGGCTCCAGATAC 58.931 47.826 3.62 0.00 46.32 2.24
2265 2367 3.718956 AGCTTAAATGGGCTCCAGATACT 59.281 43.478 0.41 0.00 36.75 2.12
2266 2368 3.817647 GCTTAAATGGGCTCCAGATACTG 59.182 47.826 0.41 0.00 36.75 2.74
2267 2369 2.355010 AAATGGGCTCCAGATACTGC 57.645 50.000 0.41 0.00 36.75 4.40
2268 2370 1.216064 AATGGGCTCCAGATACTGCA 58.784 50.000 0.41 0.00 36.75 4.41
2269 2371 0.763652 ATGGGCTCCAGATACTGCAG 59.236 55.000 13.48 13.48 36.75 4.41
2270 2372 1.227793 GGGCTCCAGATACTGCAGC 60.228 63.158 15.27 6.17 43.85 5.25
2271 2373 4.453093 GCTCCAGATACTGCAGCC 57.547 61.111 15.27 3.20 39.17 4.85
2272 2374 1.227793 GCTCCAGATACTGCAGCCC 60.228 63.158 15.27 2.79 39.17 5.19
2273 2375 1.976132 GCTCCAGATACTGCAGCCCA 61.976 60.000 15.27 0.00 39.17 5.36
2274 2376 0.763652 CTCCAGATACTGCAGCCCAT 59.236 55.000 15.27 4.53 0.00 4.00
2275 2377 0.471191 TCCAGATACTGCAGCCCATG 59.529 55.000 15.27 8.10 0.00 3.66
2276 2378 0.536687 CCAGATACTGCAGCCCATGG 60.537 60.000 15.27 13.60 0.00 3.66
2277 2379 0.182061 CAGATACTGCAGCCCATGGT 59.818 55.000 15.27 0.00 0.00 3.55
2278 2380 0.182061 AGATACTGCAGCCCATGGTG 59.818 55.000 15.27 4.31 42.91 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.825972 CGGATATAAATGTCGCTCAATTTTATT 57.174 29.630 0.00 0.00 29.56 1.40
8 9 8.279800 CACGGATATAAATGTCGCTCAATTTTA 58.720 33.333 0.00 0.00 0.00 1.52
9 10 7.011950 TCACGGATATAAATGTCGCTCAATTTT 59.988 33.333 0.00 0.00 0.00 1.82
10 11 6.481976 TCACGGATATAAATGTCGCTCAATTT 59.518 34.615 0.00 0.00 0.00 1.82
11 12 5.989168 TCACGGATATAAATGTCGCTCAATT 59.011 36.000 0.00 0.00 0.00 2.32
12 13 5.538118 TCACGGATATAAATGTCGCTCAAT 58.462 37.500 0.00 0.00 0.00 2.57
13 14 4.939271 TCACGGATATAAATGTCGCTCAA 58.061 39.130 0.00 0.00 0.00 3.02
14 15 4.577834 TCACGGATATAAATGTCGCTCA 57.422 40.909 0.00 0.00 0.00 4.26
15 16 5.220381 TCTTCACGGATATAAATGTCGCTC 58.780 41.667 0.00 0.00 0.00 5.03
16 17 5.009710 TCTCTTCACGGATATAAATGTCGCT 59.990 40.000 0.00 0.00 0.00 4.93
17 18 5.220381 TCTCTTCACGGATATAAATGTCGC 58.780 41.667 0.00 0.00 0.00 5.19
18 19 7.139392 TCTTCTCTTCACGGATATAAATGTCG 58.861 38.462 0.00 0.00 0.00 4.35
23 24 9.132923 ACACTATCTTCTCTTCACGGATATAAA 57.867 33.333 0.00 0.00 0.00 1.40
24 25 8.693120 ACACTATCTTCTCTTCACGGATATAA 57.307 34.615 0.00 0.00 0.00 0.98
25 26 9.788889 TTACACTATCTTCTCTTCACGGATATA 57.211 33.333 0.00 0.00 0.00 0.86
26 27 8.693120 TTACACTATCTTCTCTTCACGGATAT 57.307 34.615 0.00 0.00 0.00 1.63
27 28 8.515695 TTTACACTATCTTCTCTTCACGGATA 57.484 34.615 0.00 0.00 0.00 2.59
28 29 7.339721 TCTTTACACTATCTTCTCTTCACGGAT 59.660 37.037 0.00 0.00 0.00 4.18
29 30 6.657966 TCTTTACACTATCTTCTCTTCACGGA 59.342 38.462 0.00 0.00 0.00 4.69
30 31 6.853720 TCTTTACACTATCTTCTCTTCACGG 58.146 40.000 0.00 0.00 0.00 4.94
31 32 7.753659 TCTCTTTACACTATCTTCTCTTCACG 58.246 38.462 0.00 0.00 0.00 4.35
32 33 9.915629 TTTCTCTTTACACTATCTTCTCTTCAC 57.084 33.333 0.00 0.00 0.00 3.18
156 166 8.885494 TCAATTTGAAATAAGTGTTTCCCAAG 57.115 30.769 0.00 0.00 37.31 3.61
216 226 5.748402 TGTACTGACCGACTAATCTCCTTA 58.252 41.667 0.00 0.00 0.00 2.69
385 426 7.007723 TCCAATTAGAATACCTGGTTTGTGTT 58.992 34.615 3.84 0.00 0.00 3.32
386 427 6.548321 TCCAATTAGAATACCTGGTTTGTGT 58.452 36.000 3.84 0.00 0.00 3.72
452 509 3.183373 GCATCTTGCTACATACTCTTCGC 59.817 47.826 0.00 0.00 40.96 4.70
654 726 8.484641 TCTTGCATATCTTTCTCTTTACACTG 57.515 34.615 0.00 0.00 0.00 3.66
919 1018 3.490933 GCCAAGAGTTCCTTTGGTTTGTC 60.491 47.826 5.28 0.00 31.42 3.18
955 1054 2.033424 GGTGTGTGTTCTTCTTCCTTGC 59.967 50.000 0.00 0.00 0.00 4.01
971 1070 2.476051 GCGCGTGAAGATGGTGTG 59.524 61.111 8.43 0.00 0.00 3.82
976 1075 0.459237 AGAAGAGGCGCGTGAAGATG 60.459 55.000 7.63 0.00 0.00 2.90
979 1078 1.807573 GGAGAAGAGGCGCGTGAAG 60.808 63.158 7.63 0.00 0.00 3.02
980 1079 2.214181 GAGGAGAAGAGGCGCGTGAA 62.214 60.000 7.63 0.00 0.00 3.18
1037 1136 0.811616 GACCAGGACAGCAATAGCCG 60.812 60.000 0.00 0.00 43.56 5.52
1098 1197 4.670221 GCAGCAAGATTATACTTATGCGCC 60.670 45.833 4.18 0.00 34.55 6.53
1364 1463 3.379372 CAGCACAACATCCCCTGAATAAG 59.621 47.826 0.00 0.00 0.00 1.73
1439 1538 4.200092 AGGTCTCAGGTTCAAAGTTCAAC 58.800 43.478 0.00 0.00 0.00 3.18
1467 1566 0.752743 CCGCACCAACATCCATCCAT 60.753 55.000 0.00 0.00 0.00 3.41
1475 1574 1.323412 TAAAGCAACCGCACCAACAT 58.677 45.000 0.00 0.00 42.27 2.71
1476 1575 1.323412 ATAAAGCAACCGCACCAACA 58.677 45.000 0.00 0.00 42.27 3.33
1477 1576 3.562567 TTATAAAGCAACCGCACCAAC 57.437 42.857 0.00 0.00 42.27 3.77
1478 1577 7.569639 TTATATTATAAAGCAACCGCACCAA 57.430 32.000 0.00 0.00 42.27 3.67
1479 1578 7.569639 TTTATATTATAAAGCAACCGCACCA 57.430 32.000 5.01 0.00 42.27 4.17
1490 1589 9.607285 AAATCAACGCCGCTTTATATTATAAAG 57.393 29.630 23.28 23.28 37.53 1.85
1496 1595 9.953697 TTAATTAAATCAACGCCGCTTTATATT 57.046 25.926 0.00 0.00 0.00 1.28
1498 1597 9.953697 AATTAATTAAATCAACGCCGCTTTATA 57.046 25.926 1.21 0.00 0.00 0.98
1499 1598 8.865590 AATTAATTAAATCAACGCCGCTTTAT 57.134 26.923 1.21 0.00 0.00 1.40
1500 1599 9.784680 TTAATTAATTAAATCAACGCCGCTTTA 57.215 25.926 16.52 0.00 29.93 1.85
1501 1600 8.690680 TTAATTAATTAAATCAACGCCGCTTT 57.309 26.923 16.52 0.00 29.93 3.51
1502 1601 8.751335 CATTAATTAATTAAATCAACGCCGCTT 58.249 29.630 21.33 1.42 36.02 4.68
1503 1602 7.381139 CCATTAATTAATTAAATCAACGCCGCT 59.619 33.333 21.33 1.60 36.02 5.52
1504 1603 7.380065 TCCATTAATTAATTAAATCAACGCCGC 59.620 33.333 21.33 0.00 36.02 6.53
1505 1604 8.789881 TCCATTAATTAATTAAATCAACGCCG 57.210 30.769 21.33 5.11 36.02 6.46
1506 1605 9.959749 TCTCCATTAATTAATTAAATCAACGCC 57.040 29.630 21.33 0.00 36.02 5.68
1524 1623 6.499699 AGGAGCATGATATTCAGTCTCCATTA 59.500 38.462 20.47 0.00 44.42 1.90
1557 1656 2.623416 CAGCAGATGCCATCAATCACAT 59.377 45.455 7.56 0.00 43.38 3.21
1558 1657 2.021457 CAGCAGATGCCATCAATCACA 58.979 47.619 7.56 0.00 43.38 3.58
1559 1658 2.776312 CAGCAGATGCCATCAATCAC 57.224 50.000 7.56 0.00 43.38 3.06
1634 1733 6.818644 GCTTAAGAGTAATGATGGTTCAGACA 59.181 38.462 6.67 0.00 34.73 3.41
1654 1756 6.987992 CCAACGGTATAGGATAAGTTGCTTAA 59.012 38.462 1.11 0.00 38.01 1.85
1659 1761 4.957296 AGCCAACGGTATAGGATAAGTTG 58.043 43.478 0.00 0.00 38.76 3.16
1664 1766 2.038033 GGCAAGCCAACGGTATAGGATA 59.962 50.000 6.14 0.00 35.81 2.59
1665 1767 1.202770 GGCAAGCCAACGGTATAGGAT 60.203 52.381 6.14 0.00 35.81 3.24
1666 1768 0.179468 GGCAAGCCAACGGTATAGGA 59.821 55.000 6.14 0.00 35.81 2.94
1667 1769 0.180406 AGGCAAGCCAACGGTATAGG 59.820 55.000 14.40 0.00 38.92 2.57
1668 1770 2.755650 CTAGGCAAGCCAACGGTATAG 58.244 52.381 14.40 0.54 38.92 1.31
1669 1771 1.202604 GCTAGGCAAGCCAACGGTATA 60.203 52.381 14.40 0.00 46.25 1.47
1670 1772 0.463833 GCTAGGCAAGCCAACGGTAT 60.464 55.000 14.40 0.00 46.25 2.73
1687 1789 1.888172 GCTGCTGCAGATGATCGCT 60.888 57.895 32.30 0.00 39.41 4.93
1689 1791 4.120085 TGCTGCTGCAGATGATCG 57.880 55.556 32.30 6.12 45.31 3.69
1704 1806 5.758784 AGTACAGTAGAAACCACTCTTTTGC 59.241 40.000 0.00 0.00 0.00 3.68
1709 1811 7.688343 ACTAGTAGTACAGTAGAAACCACTCT 58.312 38.462 0.00 0.00 34.66 3.24
1710 1812 7.065683 GGACTAGTAGTACAGTAGAAACCACTC 59.934 44.444 7.72 0.00 34.66 3.51
1728 1830 5.044328 ACTGGACTGGACTAATGGACTAGTA 60.044 44.000 0.00 0.00 32.14 1.82
1734 1836 2.902608 ACACTGGACTGGACTAATGGA 58.097 47.619 0.00 0.00 0.00 3.41
1761 1863 1.095807 GGATTTAGGGTGCAGCCGAC 61.096 60.000 28.24 17.59 38.44 4.79
1764 1866 0.753111 CCTGGATTTAGGGTGCAGCC 60.753 60.000 27.66 27.66 34.17 4.85
1781 1883 0.480252 AGCTTTCCTTGGCTCAACCT 59.520 50.000 0.00 0.00 40.22 3.50
1782 1884 2.200373 TAGCTTTCCTTGGCTCAACC 57.800 50.000 0.00 0.00 39.65 3.77
1783 1885 3.412386 TCTTAGCTTTCCTTGGCTCAAC 58.588 45.455 0.00 0.00 39.65 3.18
1784 1886 3.788227 TCTTAGCTTTCCTTGGCTCAA 57.212 42.857 0.00 0.00 39.65 3.02
1785 1887 3.073062 ACTTCTTAGCTTTCCTTGGCTCA 59.927 43.478 0.00 0.00 39.65 4.26
1786 1888 3.680490 ACTTCTTAGCTTTCCTTGGCTC 58.320 45.455 0.00 0.00 39.65 4.70
1798 1900 1.546834 CGCGACCAGTACTTCTTAGC 58.453 55.000 0.00 0.00 0.00 3.09
1803 1905 2.879462 CCGCGCGACCAGTACTTC 60.879 66.667 34.63 0.00 0.00 3.01
1819 1921 3.942439 GAGGGGTAGGATGGCGCC 61.942 72.222 22.73 22.73 37.90 6.53
1820 1922 3.942439 GGAGGGGTAGGATGGCGC 61.942 72.222 0.00 0.00 0.00 6.53
1821 1923 3.616721 CGGAGGGGTAGGATGGCG 61.617 72.222 0.00 0.00 0.00 5.69
1834 1936 2.738521 CGTGTGCTTGGACCGGAG 60.739 66.667 9.46 0.00 0.00 4.63
1835 1937 4.980805 GCGTGTGCTTGGACCGGA 62.981 66.667 9.46 0.00 38.39 5.14
1837 1939 3.049674 ATGCGTGTGCTTGGACCG 61.050 61.111 0.00 0.00 43.34 4.79
1838 1940 2.562912 CATGCGTGTGCTTGGACC 59.437 61.111 0.00 0.00 41.28 4.46
1842 1944 1.288419 TACGTCCATGCGTGTGCTTG 61.288 55.000 4.96 0.00 45.33 4.01
1843 1945 1.005512 TACGTCCATGCGTGTGCTT 60.006 52.632 4.96 0.00 45.33 3.91
1844 1946 1.736645 GTACGTCCATGCGTGTGCT 60.737 57.895 4.96 0.00 45.33 4.40
1845 1947 2.736682 GGTACGTCCATGCGTGTGC 61.737 63.158 4.96 0.00 45.33 4.57
1846 1948 3.470267 GGTACGTCCATGCGTGTG 58.530 61.111 4.96 0.00 45.33 3.82
1859 1961 1.043673 AGGAGGCATGGAGTCGGTAC 61.044 60.000 0.00 0.00 0.00 3.34
1860 1962 0.755698 GAGGAGGCATGGAGTCGGTA 60.756 60.000 0.00 0.00 0.00 4.02
1861 1963 2.039624 AGGAGGCATGGAGTCGGT 59.960 61.111 0.00 0.00 0.00 4.69
1862 1964 2.801631 GGAGGAGGCATGGAGTCGG 61.802 68.421 0.00 0.00 0.00 4.79
1863 1965 1.760086 AGGAGGAGGCATGGAGTCG 60.760 63.158 0.00 0.00 0.00 4.18
1864 1966 1.828768 CAGGAGGAGGCATGGAGTC 59.171 63.158 0.00 0.00 0.00 3.36
1865 1967 2.373707 GCAGGAGGAGGCATGGAGT 61.374 63.158 0.00 0.00 0.00 3.85
1866 1968 2.042404 GAGCAGGAGGAGGCATGGAG 62.042 65.000 0.00 0.00 0.00 3.86
1867 1969 2.041762 AGCAGGAGGAGGCATGGA 59.958 61.111 0.00 0.00 0.00 3.41
1868 1970 2.071262 AGAGCAGGAGGAGGCATGG 61.071 63.158 0.00 0.00 0.00 3.66
1869 1971 1.146485 CAGAGCAGGAGGAGGCATG 59.854 63.158 0.00 0.00 0.00 4.06
1870 1972 2.744243 GCAGAGCAGGAGGAGGCAT 61.744 63.158 0.00 0.00 0.00 4.40
1871 1973 3.397439 GCAGAGCAGGAGGAGGCA 61.397 66.667 0.00 0.00 0.00 4.75
1872 1974 4.173924 GGCAGAGCAGGAGGAGGC 62.174 72.222 0.00 0.00 0.00 4.70
1873 1975 2.686470 TGGCAGAGCAGGAGGAGG 60.686 66.667 0.00 0.00 0.00 4.30
1874 1976 1.551908 AAGTGGCAGAGCAGGAGGAG 61.552 60.000 0.00 0.00 0.00 3.69
1875 1977 1.537397 AAGTGGCAGAGCAGGAGGA 60.537 57.895 0.00 0.00 0.00 3.71
1876 1978 1.078567 GAAGTGGCAGAGCAGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
1877 1979 1.447489 CGAAGTGGCAGAGCAGGAG 60.447 63.158 0.00 0.00 0.00 3.69
1878 1980 2.659016 CGAAGTGGCAGAGCAGGA 59.341 61.111 0.00 0.00 0.00 3.86
1879 1981 3.123620 GCGAAGTGGCAGAGCAGG 61.124 66.667 0.00 0.00 0.00 4.85
1880 1982 3.123620 GGCGAAGTGGCAGAGCAG 61.124 66.667 0.00 0.00 44.08 4.24
1899 2001 4.293648 TGACTGACGGGCGGTGTG 62.294 66.667 0.00 0.00 35.85 3.82
1900 2002 4.295119 GTGACTGACGGGCGGTGT 62.295 66.667 0.00 0.00 35.85 4.16
1925 2027 4.825422 TCAGTCATTTCTTGCTAGTGGAG 58.175 43.478 0.00 0.00 0.00 3.86
1926 2028 4.890158 TCAGTCATTTCTTGCTAGTGGA 57.110 40.909 0.00 0.00 0.00 4.02
1927 2029 4.334759 CCATCAGTCATTTCTTGCTAGTGG 59.665 45.833 0.00 0.00 0.00 4.00
1928 2030 5.181009 TCCATCAGTCATTTCTTGCTAGTG 58.819 41.667 0.00 0.00 0.00 2.74
1929 2031 5.426689 TCCATCAGTCATTTCTTGCTAGT 57.573 39.130 0.00 0.00 0.00 2.57
1930 2032 5.238868 CCATCCATCAGTCATTTCTTGCTAG 59.761 44.000 0.00 0.00 0.00 3.42
1931 2033 5.128205 CCATCCATCAGTCATTTCTTGCTA 58.872 41.667 0.00 0.00 0.00 3.49
1932 2034 3.952323 CCATCCATCAGTCATTTCTTGCT 59.048 43.478 0.00 0.00 0.00 3.91
1933 2035 3.067742 CCCATCCATCAGTCATTTCTTGC 59.932 47.826 0.00 0.00 0.00 4.01
1934 2036 3.635373 CCCCATCCATCAGTCATTTCTTG 59.365 47.826 0.00 0.00 0.00 3.02
1935 2037 3.270433 ACCCCATCCATCAGTCATTTCTT 59.730 43.478 0.00 0.00 0.00 2.52
1936 2038 2.854967 ACCCCATCCATCAGTCATTTCT 59.145 45.455 0.00 0.00 0.00 2.52
1937 2039 3.303351 ACCCCATCCATCAGTCATTTC 57.697 47.619 0.00 0.00 0.00 2.17
1938 2040 3.139025 CCTACCCCATCCATCAGTCATTT 59.861 47.826 0.00 0.00 0.00 2.32
1939 2041 2.713167 CCTACCCCATCCATCAGTCATT 59.287 50.000 0.00 0.00 0.00 2.57
1940 2042 2.089982 TCCTACCCCATCCATCAGTCAT 60.090 50.000 0.00 0.00 0.00 3.06
1941 2043 1.293763 TCCTACCCCATCCATCAGTCA 59.706 52.381 0.00 0.00 0.00 3.41
1942 2044 1.974236 CTCCTACCCCATCCATCAGTC 59.026 57.143 0.00 0.00 0.00 3.51
1943 2045 1.295292 ACTCCTACCCCATCCATCAGT 59.705 52.381 0.00 0.00 0.00 3.41
1944 2046 2.109229 ACTCCTACCCCATCCATCAG 57.891 55.000 0.00 0.00 0.00 2.90
1945 2047 2.158158 CCTACTCCTACCCCATCCATCA 60.158 54.545 0.00 0.00 0.00 3.07
1946 2048 2.111972 TCCTACTCCTACCCCATCCATC 59.888 54.545 0.00 0.00 0.00 3.51
1947 2049 2.161624 TCCTACTCCTACCCCATCCAT 58.838 52.381 0.00 0.00 0.00 3.41
1948 2050 1.627847 TCCTACTCCTACCCCATCCA 58.372 55.000 0.00 0.00 0.00 3.41
1949 2051 4.415224 TTATCCTACTCCTACCCCATCC 57.585 50.000 0.00 0.00 0.00 3.51
1950 2052 4.223255 GCTTTATCCTACTCCTACCCCATC 59.777 50.000 0.00 0.00 0.00 3.51
1951 2053 4.140423 AGCTTTATCCTACTCCTACCCCAT 60.140 45.833 0.00 0.00 0.00 4.00
1952 2054 3.209152 AGCTTTATCCTACTCCTACCCCA 59.791 47.826 0.00 0.00 0.00 4.96
1953 2055 3.859370 AGCTTTATCCTACTCCTACCCC 58.141 50.000 0.00 0.00 0.00 4.95
1954 2056 6.781507 TCTTTAGCTTTATCCTACTCCTACCC 59.218 42.308 0.00 0.00 0.00 3.69
1955 2057 7.836479 TCTTTAGCTTTATCCTACTCCTACC 57.164 40.000 0.00 0.00 0.00 3.18
1959 2061 9.157104 GCATTATCTTTAGCTTTATCCTACTCC 57.843 37.037 0.00 0.00 0.00 3.85
1960 2062 8.865001 CGCATTATCTTTAGCTTTATCCTACTC 58.135 37.037 0.00 0.00 0.00 2.59
1961 2063 8.368668 ACGCATTATCTTTAGCTTTATCCTACT 58.631 33.333 0.00 0.00 0.00 2.57
1962 2064 8.436200 CACGCATTATCTTTAGCTTTATCCTAC 58.564 37.037 0.00 0.00 0.00 3.18
1963 2065 8.148351 ACACGCATTATCTTTAGCTTTATCCTA 58.852 33.333 0.00 0.00 0.00 2.94
1964 2066 6.992715 ACACGCATTATCTTTAGCTTTATCCT 59.007 34.615 0.00 0.00 0.00 3.24
1965 2067 7.072030 CACACGCATTATCTTTAGCTTTATCC 58.928 38.462 0.00 0.00 0.00 2.59
1966 2068 7.072030 CCACACGCATTATCTTTAGCTTTATC 58.928 38.462 0.00 0.00 0.00 1.75
1967 2069 6.017109 CCCACACGCATTATCTTTAGCTTTAT 60.017 38.462 0.00 0.00 0.00 1.40
1968 2070 5.295787 CCCACACGCATTATCTTTAGCTTTA 59.704 40.000 0.00 0.00 0.00 1.85
1969 2071 4.096382 CCCACACGCATTATCTTTAGCTTT 59.904 41.667 0.00 0.00 0.00 3.51
1970 2072 3.627577 CCCACACGCATTATCTTTAGCTT 59.372 43.478 0.00 0.00 0.00 3.74
1971 2073 3.206150 CCCACACGCATTATCTTTAGCT 58.794 45.455 0.00 0.00 0.00 3.32
1972 2074 2.290641 CCCCACACGCATTATCTTTAGC 59.709 50.000 0.00 0.00 0.00 3.09
1973 2075 2.290641 GCCCCACACGCATTATCTTTAG 59.709 50.000 0.00 0.00 0.00 1.85
1974 2076 2.294074 GCCCCACACGCATTATCTTTA 58.706 47.619 0.00 0.00 0.00 1.85
1975 2077 1.102978 GCCCCACACGCATTATCTTT 58.897 50.000 0.00 0.00 0.00 2.52
1976 2078 1.095228 CGCCCCACACGCATTATCTT 61.095 55.000 0.00 0.00 0.00 2.40
1977 2079 1.523711 CGCCCCACACGCATTATCT 60.524 57.895 0.00 0.00 0.00 1.98
1978 2080 1.817941 ACGCCCCACACGCATTATC 60.818 57.895 0.00 0.00 0.00 1.75
1979 2081 2.112198 CACGCCCCACACGCATTAT 61.112 57.895 0.00 0.00 0.00 1.28
1980 2082 2.529454 ATCACGCCCCACACGCATTA 62.529 55.000 0.00 0.00 0.00 1.90
1981 2083 3.918253 ATCACGCCCCACACGCATT 62.918 57.895 0.00 0.00 0.00 3.56
1982 2084 4.408821 ATCACGCCCCACACGCAT 62.409 61.111 0.00 0.00 0.00 4.73
1984 2086 2.916502 TATCATCACGCCCCACACGC 62.917 60.000 0.00 0.00 0.00 5.34
1985 2087 0.875908 CTATCATCACGCCCCACACG 60.876 60.000 0.00 0.00 0.00 4.49
1986 2088 0.178068 ACTATCATCACGCCCCACAC 59.822 55.000 0.00 0.00 0.00 3.82
1987 2089 0.177836 CACTATCATCACGCCCCACA 59.822 55.000 0.00 0.00 0.00 4.17
1988 2090 1.160329 GCACTATCATCACGCCCCAC 61.160 60.000 0.00 0.00 0.00 4.61
1989 2091 1.146041 GCACTATCATCACGCCCCA 59.854 57.895 0.00 0.00 0.00 4.96
1990 2092 0.882042 CTGCACTATCATCACGCCCC 60.882 60.000 0.00 0.00 0.00 5.80
1991 2093 1.502163 GCTGCACTATCATCACGCCC 61.502 60.000 0.00 0.00 0.00 6.13
1992 2094 0.531532 AGCTGCACTATCATCACGCC 60.532 55.000 1.02 0.00 0.00 5.68
1993 2095 0.857935 GAGCTGCACTATCATCACGC 59.142 55.000 1.02 0.00 0.00 5.34
1994 2096 2.214387 TGAGCTGCACTATCATCACG 57.786 50.000 1.02 0.00 0.00 4.35
1995 2097 3.242673 GCTTTGAGCTGCACTATCATCAC 60.243 47.826 1.02 0.00 38.45 3.06
1996 2098 2.941064 GCTTTGAGCTGCACTATCATCA 59.059 45.455 1.02 0.00 38.45 3.07
1997 2099 3.605743 GCTTTGAGCTGCACTATCATC 57.394 47.619 1.02 0.00 38.45 2.92
2009 2111 1.135083 TGTAGGTCGCTAGCTTTGAGC 60.135 52.381 13.93 12.25 42.84 4.26
2010 2112 2.941453 TGTAGGTCGCTAGCTTTGAG 57.059 50.000 13.93 0.00 34.60 3.02
2011 2113 3.323243 GTTTGTAGGTCGCTAGCTTTGA 58.677 45.455 13.93 0.00 34.60 2.69
2012 2114 2.415512 GGTTTGTAGGTCGCTAGCTTTG 59.584 50.000 13.93 0.00 34.60 2.77
2013 2115 2.614734 GGGTTTGTAGGTCGCTAGCTTT 60.615 50.000 13.93 0.00 34.60 3.51
2014 2116 1.066358 GGGTTTGTAGGTCGCTAGCTT 60.066 52.381 13.93 0.00 34.60 3.74
2015 2117 0.535797 GGGTTTGTAGGTCGCTAGCT 59.464 55.000 13.93 0.00 37.23 3.32
2016 2118 0.248289 TGGGTTTGTAGGTCGCTAGC 59.752 55.000 4.06 4.06 0.00 3.42
2017 2119 1.549170 ACTGGGTTTGTAGGTCGCTAG 59.451 52.381 0.00 0.00 0.00 3.42
2018 2120 1.636148 ACTGGGTTTGTAGGTCGCTA 58.364 50.000 0.00 0.00 0.00 4.26
2019 2121 0.763035 AACTGGGTTTGTAGGTCGCT 59.237 50.000 0.00 0.00 0.00 4.93
2020 2122 2.460757 TAACTGGGTTTGTAGGTCGC 57.539 50.000 0.00 0.00 0.00 5.19
2021 2123 4.571919 TCAATAACTGGGTTTGTAGGTCG 58.428 43.478 0.00 0.00 0.00 4.79
2022 2124 6.177610 TGATCAATAACTGGGTTTGTAGGTC 58.822 40.000 0.00 0.00 0.00 3.85
2023 2125 6.134535 TGATCAATAACTGGGTTTGTAGGT 57.865 37.500 0.00 0.00 0.00 3.08
2024 2126 7.461182 TTTGATCAATAACTGGGTTTGTAGG 57.539 36.000 9.40 0.00 0.00 3.18
2025 2127 8.190784 GGATTTGATCAATAACTGGGTTTGTAG 58.809 37.037 9.40 0.00 0.00 2.74
2026 2128 7.893302 AGGATTTGATCAATAACTGGGTTTGTA 59.107 33.333 9.40 0.00 0.00 2.41
2027 2129 6.725834 AGGATTTGATCAATAACTGGGTTTGT 59.274 34.615 9.40 0.00 0.00 2.83
2028 2130 7.174107 AGGATTTGATCAATAACTGGGTTTG 57.826 36.000 9.40 0.00 0.00 2.93
2029 2131 7.614494 CAAGGATTTGATCAATAACTGGGTTT 58.386 34.615 9.40 0.00 36.36 3.27
2030 2132 6.351286 GCAAGGATTTGATCAATAACTGGGTT 60.351 38.462 9.40 0.00 36.36 4.11
2031 2133 5.127682 GCAAGGATTTGATCAATAACTGGGT 59.872 40.000 9.40 0.00 36.36 4.51
2032 2134 5.361857 AGCAAGGATTTGATCAATAACTGGG 59.638 40.000 9.40 5.46 36.36 4.45
2033 2135 6.461110 AGCAAGGATTTGATCAATAACTGG 57.539 37.500 9.40 6.41 36.36 4.00
2034 2136 8.442632 TCTAGCAAGGATTTGATCAATAACTG 57.557 34.615 9.40 5.03 36.36 3.16
2039 2141 8.878211 TCTCTATCTAGCAAGGATTTGATCAAT 58.122 33.333 9.40 0.00 36.36 2.57
2040 2142 8.255111 TCTCTATCTAGCAAGGATTTGATCAA 57.745 34.615 3.38 3.38 36.36 2.57
2041 2143 7.846101 TCTCTATCTAGCAAGGATTTGATCA 57.154 36.000 0.00 0.00 36.36 2.92
2042 2144 7.765360 CCATCTCTATCTAGCAAGGATTTGATC 59.235 40.741 0.00 0.00 36.36 2.92
2043 2145 7.457218 TCCATCTCTATCTAGCAAGGATTTGAT 59.543 37.037 0.00 0.00 36.36 2.57
2044 2146 6.784473 TCCATCTCTATCTAGCAAGGATTTGA 59.216 38.462 0.00 0.00 36.36 2.69
2045 2147 7.002250 TCCATCTCTATCTAGCAAGGATTTG 57.998 40.000 0.00 0.00 37.36 2.32
2046 2148 7.237263 ACATCCATCTCTATCTAGCAAGGATTT 59.763 37.037 0.00 0.00 31.37 2.17
2047 2149 6.730038 ACATCCATCTCTATCTAGCAAGGATT 59.270 38.462 0.00 0.00 31.37 3.01
2048 2150 6.154877 CACATCCATCTCTATCTAGCAAGGAT 59.845 42.308 0.00 0.00 33.87 3.24
2049 2151 5.479724 CACATCCATCTCTATCTAGCAAGGA 59.520 44.000 0.00 0.00 0.00 3.36
2050 2152 5.479724 TCACATCCATCTCTATCTAGCAAGG 59.520 44.000 0.00 0.00 0.00 3.61
2051 2153 6.587206 TCACATCCATCTCTATCTAGCAAG 57.413 41.667 0.00 0.00 0.00 4.01
2052 2154 6.952938 AGATCACATCCATCTCTATCTAGCAA 59.047 38.462 0.00 0.00 0.00 3.91
2053 2155 6.492274 AGATCACATCCATCTCTATCTAGCA 58.508 40.000 0.00 0.00 0.00 3.49
2054 2156 7.031226 GAGATCACATCCATCTCTATCTAGC 57.969 44.000 0.00 0.00 42.14 3.42
2062 2164 3.006752 GGGACAGAGATCACATCCATCTC 59.993 52.174 13.13 2.03 44.69 2.75
2063 2165 2.971330 GGGACAGAGATCACATCCATCT 59.029 50.000 13.13 0.00 33.01 2.90
2064 2166 2.971330 AGGGACAGAGATCACATCCATC 59.029 50.000 13.13 0.87 0.00 3.51
2065 2167 2.971330 GAGGGACAGAGATCACATCCAT 59.029 50.000 13.13 7.74 0.00 3.41
2066 2168 2.392662 GAGGGACAGAGATCACATCCA 58.607 52.381 13.13 0.00 0.00 3.41
2067 2169 1.339610 CGAGGGACAGAGATCACATCC 59.660 57.143 0.00 0.05 0.00 3.51
2068 2170 2.034053 GTCGAGGGACAGAGATCACATC 59.966 54.545 0.00 0.00 42.91 3.06
2069 2171 2.028130 GTCGAGGGACAGAGATCACAT 58.972 52.381 0.00 0.00 42.91 3.21
2070 2172 1.464734 GTCGAGGGACAGAGATCACA 58.535 55.000 0.00 0.00 42.91 3.58
2071 2173 0.741915 GGTCGAGGGACAGAGATCAC 59.258 60.000 0.00 0.00 45.28 3.06
2072 2174 0.626382 AGGTCGAGGGACAGAGATCA 59.374 55.000 0.00 0.00 45.28 2.92
2073 2175 2.158726 AGTAGGTCGAGGGACAGAGATC 60.159 54.545 0.00 0.00 45.28 2.75
2074 2176 1.847737 AGTAGGTCGAGGGACAGAGAT 59.152 52.381 0.00 0.00 45.28 2.75
2075 2177 1.287217 AGTAGGTCGAGGGACAGAGA 58.713 55.000 0.00 0.00 45.28 3.10
2076 2178 3.142951 CATAGTAGGTCGAGGGACAGAG 58.857 54.545 0.00 0.00 45.28 3.35
2077 2179 2.775960 TCATAGTAGGTCGAGGGACAGA 59.224 50.000 0.00 0.00 45.28 3.41
2078 2180 2.879646 GTCATAGTAGGTCGAGGGACAG 59.120 54.545 0.00 0.00 45.28 3.51
2079 2181 2.422519 GGTCATAGTAGGTCGAGGGACA 60.423 54.545 0.00 0.00 45.28 4.02
2080 2182 2.228925 GGTCATAGTAGGTCGAGGGAC 58.771 57.143 0.00 0.00 42.66 4.46
2081 2183 1.848388 TGGTCATAGTAGGTCGAGGGA 59.152 52.381 0.00 0.00 0.00 4.20
2082 2184 2.158652 TCTGGTCATAGTAGGTCGAGGG 60.159 54.545 0.00 0.00 0.00 4.30
2083 2185 2.879646 GTCTGGTCATAGTAGGTCGAGG 59.120 54.545 0.00 0.00 0.00 4.63
2084 2186 3.542648 TGTCTGGTCATAGTAGGTCGAG 58.457 50.000 0.00 0.00 0.00 4.04
2085 2187 3.639672 TGTCTGGTCATAGTAGGTCGA 57.360 47.619 0.00 0.00 0.00 4.20
2086 2188 4.713824 TTTGTCTGGTCATAGTAGGTCG 57.286 45.455 0.00 0.00 0.00 4.79
2087 2189 6.702282 GCTTATTTGTCTGGTCATAGTAGGTC 59.298 42.308 0.00 0.00 0.00 3.85
2088 2190 6.408206 GGCTTATTTGTCTGGTCATAGTAGGT 60.408 42.308 0.00 0.00 0.00 3.08
2089 2191 5.992217 GGCTTATTTGTCTGGTCATAGTAGG 59.008 44.000 0.00 0.00 0.00 3.18
2090 2192 6.821388 AGGCTTATTTGTCTGGTCATAGTAG 58.179 40.000 0.00 0.00 0.00 2.57
2091 2193 6.808321 AGGCTTATTTGTCTGGTCATAGTA 57.192 37.500 0.00 0.00 0.00 1.82
2092 2194 5.700402 AGGCTTATTTGTCTGGTCATAGT 57.300 39.130 0.00 0.00 0.00 2.12
2093 2195 5.698545 GCTAGGCTTATTTGTCTGGTCATAG 59.301 44.000 0.00 0.00 0.00 2.23
2094 2196 5.454755 GGCTAGGCTTATTTGTCTGGTCATA 60.455 44.000 9.46 0.00 0.00 2.15
2095 2197 4.455606 GCTAGGCTTATTTGTCTGGTCAT 58.544 43.478 0.00 0.00 0.00 3.06
2096 2198 3.370527 GGCTAGGCTTATTTGTCTGGTCA 60.371 47.826 9.46 0.00 0.00 4.02
2097 2199 3.206964 GGCTAGGCTTATTTGTCTGGTC 58.793 50.000 9.46 0.00 0.00 4.02
2098 2200 2.576191 TGGCTAGGCTTATTTGTCTGGT 59.424 45.455 18.18 0.00 0.00 4.00
2099 2201 2.945668 GTGGCTAGGCTTATTTGTCTGG 59.054 50.000 18.18 0.00 0.00 3.86
2100 2202 3.624861 CAGTGGCTAGGCTTATTTGTCTG 59.375 47.826 18.18 8.75 0.00 3.51
2101 2203 3.878778 CAGTGGCTAGGCTTATTTGTCT 58.121 45.455 18.18 0.91 0.00 3.41
2102 2204 2.356069 GCAGTGGCTAGGCTTATTTGTC 59.644 50.000 18.18 2.51 36.96 3.18
2103 2205 2.290896 TGCAGTGGCTAGGCTTATTTGT 60.291 45.455 18.18 0.00 41.91 2.83
2104 2206 2.368439 TGCAGTGGCTAGGCTTATTTG 58.632 47.619 18.18 9.27 41.91 2.32
2105 2207 2.755103 GTTGCAGTGGCTAGGCTTATTT 59.245 45.455 18.18 0.00 41.91 1.40
2106 2208 2.290896 TGTTGCAGTGGCTAGGCTTATT 60.291 45.455 18.18 0.00 41.91 1.40
2107 2209 1.281867 TGTTGCAGTGGCTAGGCTTAT 59.718 47.619 18.18 0.11 41.91 1.73
2108 2210 0.690192 TGTTGCAGTGGCTAGGCTTA 59.310 50.000 18.18 0.00 41.91 3.09
2109 2211 0.178992 TTGTTGCAGTGGCTAGGCTT 60.179 50.000 18.18 2.88 41.91 4.35
2110 2212 0.890996 GTTGTTGCAGTGGCTAGGCT 60.891 55.000 18.18 0.00 41.91 4.58
2111 2213 1.172180 TGTTGTTGCAGTGGCTAGGC 61.172 55.000 9.85 9.85 41.91 3.93
2112 2214 1.317613 TTGTTGTTGCAGTGGCTAGG 58.682 50.000 0.00 0.00 41.91 3.02
2113 2215 2.352030 CCATTGTTGTTGCAGTGGCTAG 60.352 50.000 0.00 0.00 38.95 3.42
2114 2216 1.612950 CCATTGTTGTTGCAGTGGCTA 59.387 47.619 0.00 0.00 38.95 3.93
2115 2217 0.390124 CCATTGTTGTTGCAGTGGCT 59.610 50.000 0.00 0.00 38.95 4.75
2116 2218 2.903284 CCATTGTTGTTGCAGTGGC 58.097 52.632 0.00 0.00 38.95 5.01
2117 2219 0.600782 GGCCATTGTTGTTGCAGTGG 60.601 55.000 0.00 3.67 45.49 4.00
2118 2220 0.600782 GGGCCATTGTTGTTGCAGTG 60.601 55.000 4.39 0.00 0.00 3.66
2119 2221 0.760189 AGGGCCATTGTTGTTGCAGT 60.760 50.000 6.18 0.00 0.00 4.40
2120 2222 0.037975 GAGGGCCATTGTTGTTGCAG 60.038 55.000 6.18 0.00 0.00 4.41
2121 2223 1.470996 GGAGGGCCATTGTTGTTGCA 61.471 55.000 6.18 0.00 0.00 4.08
2122 2224 1.187567 AGGAGGGCCATTGTTGTTGC 61.188 55.000 6.18 0.00 36.29 4.17
2123 2225 0.890683 GAGGAGGGCCATTGTTGTTG 59.109 55.000 6.18 0.00 36.29 3.33
2124 2226 0.609131 CGAGGAGGGCCATTGTTGTT 60.609 55.000 6.18 0.00 36.29 2.83
2125 2227 1.002134 CGAGGAGGGCCATTGTTGT 60.002 57.895 6.18 0.00 36.29 3.32
2126 2228 2.409870 GCGAGGAGGGCCATTGTTG 61.410 63.158 6.18 0.00 36.29 3.33
2127 2229 2.044946 GCGAGGAGGGCCATTGTT 60.045 61.111 6.18 0.00 36.29 2.83
2137 2239 3.672295 GAAGGCTGTGGGCGAGGAG 62.672 68.421 0.00 0.00 42.94 3.69
2138 2240 3.706373 GAAGGCTGTGGGCGAGGA 61.706 66.667 0.00 0.00 42.94 3.71
2139 2241 4.785453 GGAAGGCTGTGGGCGAGG 62.785 72.222 0.00 0.00 42.94 4.63
2140 2242 3.551496 TTGGAAGGCTGTGGGCGAG 62.551 63.158 0.00 0.00 42.94 5.03
2141 2243 3.126703 TTTGGAAGGCTGTGGGCGA 62.127 57.895 0.00 0.00 42.94 5.54
2142 2244 2.597217 TTTGGAAGGCTGTGGGCG 60.597 61.111 0.00 0.00 42.94 6.13
2143 2245 2.278330 CCTTTGGAAGGCTGTGGGC 61.278 63.158 0.00 0.00 42.78 5.36
2144 2246 4.102113 CCTTTGGAAGGCTGTGGG 57.898 61.111 0.00 0.00 42.78 4.61
2152 2254 2.343426 GCCCTTCGCCCTTTGGAAG 61.343 63.158 0.00 0.00 39.44 3.46
2153 2255 2.282887 GCCCTTCGCCCTTTGGAA 60.283 61.111 0.00 0.00 0.00 3.53
2162 2264 2.752903 TGATTTCTTAAAGGCCCTTCGC 59.247 45.455 0.00 0.00 0.00 4.70
2163 2265 5.582689 ATTGATTTCTTAAAGGCCCTTCG 57.417 39.130 0.00 0.00 0.00 3.79
2164 2266 8.621532 AAAAATTGATTTCTTAAAGGCCCTTC 57.378 30.769 0.00 0.00 0.00 3.46
2211 2313 9.896263 TGCGTCTTCGTTAAATACATACATATA 57.104 29.630 0.00 0.00 39.49 0.86
2212 2314 8.806177 TGCGTCTTCGTTAAATACATACATAT 57.194 30.769 0.00 0.00 39.49 1.78
2213 2315 8.696175 CATGCGTCTTCGTTAAATACATACATA 58.304 33.333 0.00 0.00 39.49 2.29
2214 2316 7.223971 ACATGCGTCTTCGTTAAATACATACAT 59.776 33.333 0.00 0.00 39.49 2.29
2215 2317 6.532302 ACATGCGTCTTCGTTAAATACATACA 59.468 34.615 0.00 0.00 39.49 2.29
2216 2318 6.839301 CACATGCGTCTTCGTTAAATACATAC 59.161 38.462 0.00 0.00 39.49 2.39
2217 2319 6.019398 CCACATGCGTCTTCGTTAAATACATA 60.019 38.462 0.00 0.00 39.49 2.29
2218 2320 5.220586 CCACATGCGTCTTCGTTAAATACAT 60.221 40.000 0.00 0.00 39.49 2.29
2219 2321 4.092237 CCACATGCGTCTTCGTTAAATACA 59.908 41.667 0.00 0.00 39.49 2.29
2220 2322 4.327898 TCCACATGCGTCTTCGTTAAATAC 59.672 41.667 0.00 0.00 39.49 1.89
2221 2323 4.496360 TCCACATGCGTCTTCGTTAAATA 58.504 39.130 0.00 0.00 39.49 1.40
2222 2324 3.331150 TCCACATGCGTCTTCGTTAAAT 58.669 40.909 0.00 0.00 39.49 1.40
2223 2325 2.734606 CTCCACATGCGTCTTCGTTAAA 59.265 45.455 0.00 0.00 39.49 1.52
2224 2326 2.333926 CTCCACATGCGTCTTCGTTAA 58.666 47.619 0.00 0.00 39.49 2.01
2225 2327 1.990799 CTCCACATGCGTCTTCGTTA 58.009 50.000 0.00 0.00 39.49 3.18
2226 2328 1.291877 GCTCCACATGCGTCTTCGTT 61.292 55.000 0.00 0.00 39.49 3.85
2227 2329 1.738099 GCTCCACATGCGTCTTCGT 60.738 57.895 0.00 0.00 39.49 3.85
2228 2330 1.016130 AAGCTCCACATGCGTCTTCG 61.016 55.000 0.00 0.00 40.37 3.79
2229 2331 2.010145 TAAGCTCCACATGCGTCTTC 57.990 50.000 0.00 0.00 35.28 2.87
2230 2332 2.472695 TTAAGCTCCACATGCGTCTT 57.527 45.000 0.00 0.00 35.28 3.01
2231 2333 2.472695 TTTAAGCTCCACATGCGTCT 57.527 45.000 0.00 0.00 35.28 4.18
2232 2334 2.223340 CCATTTAAGCTCCACATGCGTC 60.223 50.000 0.00 0.00 35.28 5.19
2233 2335 1.745087 CCATTTAAGCTCCACATGCGT 59.255 47.619 0.00 0.00 35.28 5.24
2234 2336 1.066002 CCCATTTAAGCTCCACATGCG 59.934 52.381 0.00 0.00 35.28 4.73
2235 2337 1.202452 GCCCATTTAAGCTCCACATGC 60.202 52.381 0.00 0.00 0.00 4.06
2236 2338 2.381911 AGCCCATTTAAGCTCCACATG 58.618 47.619 0.00 0.00 32.71 3.21
2237 2339 2.834638 AGCCCATTTAAGCTCCACAT 57.165 45.000 0.00 0.00 32.71 3.21
2243 2345 3.718956 AGTATCTGGAGCCCATTTAAGCT 59.281 43.478 0.00 0.00 43.55 3.74
2244 2346 3.817647 CAGTATCTGGAGCCCATTTAAGC 59.182 47.826 0.00 0.00 30.82 3.09
2245 2347 3.817647 GCAGTATCTGGAGCCCATTTAAG 59.182 47.826 0.00 0.00 30.82 1.85
2246 2348 3.201930 TGCAGTATCTGGAGCCCATTTAA 59.798 43.478 0.00 0.00 30.82 1.52
2247 2349 2.777114 TGCAGTATCTGGAGCCCATTTA 59.223 45.455 0.00 0.00 30.82 1.40
2248 2350 1.565759 TGCAGTATCTGGAGCCCATTT 59.434 47.619 0.00 0.00 30.82 2.32
2249 2351 1.142465 CTGCAGTATCTGGAGCCCATT 59.858 52.381 5.25 0.00 42.43 3.16
2250 2352 0.763652 CTGCAGTATCTGGAGCCCAT 59.236 55.000 5.25 0.00 42.43 4.00
2251 2353 2.215191 CTGCAGTATCTGGAGCCCA 58.785 57.895 5.25 0.00 42.43 5.36
2256 2358 0.471191 CATGGGCTGCAGTATCTGGA 59.529 55.000 16.64 0.00 31.21 3.86
2257 2359 0.536687 CCATGGGCTGCAGTATCTGG 60.537 60.000 16.64 13.47 31.21 3.86
2258 2360 0.182061 ACCATGGGCTGCAGTATCTG 59.818 55.000 18.09 8.37 34.12 2.90
2259 2361 0.182061 CACCATGGGCTGCAGTATCT 59.818 55.000 18.09 0.00 0.00 1.98
2260 2362 2.711711 CACCATGGGCTGCAGTATC 58.288 57.895 18.09 5.89 0.00 2.24
2261 2363 4.993307 CACCATGGGCTGCAGTAT 57.007 55.556 18.09 5.03 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.