Multiple sequence alignment - TraesCS6D01G401100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G401100 chr6D 100.000 3567 0 0 1 3567 470572072 470575638 0.000000e+00 6588.0
1 TraesCS6D01G401100 chr6D 91.745 642 33 7 1036 1677 259534436 259533815 0.000000e+00 874.0
2 TraesCS6D01G401100 chr6D 96.970 33 1 0 1 33 55938039 55938071 4.970000e-04 56.5
3 TraesCS6D01G401100 chr6B 96.458 1920 53 6 887 2791 720562642 720560723 0.000000e+00 3155.0
4 TraesCS6D01G401100 chr6B 86.364 924 90 11 1 913 720563626 720562728 0.000000e+00 976.0
5 TraesCS6D01G401100 chr6B 94.595 37 2 0 1 37 408260117 408260153 1.380000e-04 58.4
6 TraesCS6D01G401100 chr6A 96.110 1825 62 4 1125 2940 615430471 615432295 0.000000e+00 2968.0
7 TraesCS6D01G401100 chr6A 90.185 540 48 5 1 536 615395687 615396225 0.000000e+00 699.0
8 TraesCS6D01G401100 chr6A 92.661 436 28 1 692 1123 615429701 615430136 3.020000e-175 625.0
9 TraesCS6D01G401100 chr6A 94.406 286 8 2 3021 3305 615432295 615432573 1.970000e-117 433.0
10 TraesCS6D01G401100 chr6A 89.691 97 7 3 2928 3022 147460796 147460891 1.740000e-23 121.0
11 TraesCS6D01G401100 chr6A 98.246 57 1 0 3332 3388 615432751 615432807 2.270000e-17 100.0
12 TraesCS6D01G401100 chr4D 93.624 643 38 2 1036 1678 505757822 505758461 0.000000e+00 957.0
13 TraesCS6D01G401100 chr2B 93.146 642 39 4 1036 1677 48285539 48284903 0.000000e+00 937.0
14 TraesCS6D01G401100 chr2B 94.286 35 1 1 4 37 513272291 513272257 6.000000e-03 52.8
15 TraesCS6D01G401100 chr1B 92.056 642 32 12 1036 1677 634899469 634900091 0.000000e+00 885.0
16 TraesCS6D01G401100 chr1B 91.900 642 33 12 1036 1677 634830459 634831081 0.000000e+00 880.0
17 TraesCS6D01G401100 chr5B 90.031 642 33 5 1036 1677 534252295 534252905 0.000000e+00 802.0
18 TraesCS6D01G401100 chr5B 90.385 104 5 4 2928 3028 472738618 472738517 8.040000e-27 132.0
19 TraesCS6D01G401100 chr5A 93.407 91 5 1 2936 3025 55158978 55159068 2.230000e-27 134.0
20 TraesCS6D01G401100 chr5A 94.253 87 5 0 2937 3023 55159064 55158978 2.230000e-27 134.0
21 TraesCS6D01G401100 chr5A 97.059 34 1 0 4 37 649456514 649456481 1.380000e-04 58.4
22 TraesCS6D01G401100 chr7A 92.308 91 7 0 2933 3023 475977180 475977270 2.890000e-26 130.0
23 TraesCS6D01G401100 chr4B 93.182 88 6 0 2936 3023 315723360 315723273 2.890000e-26 130.0
24 TraesCS6D01G401100 chr2A 93.103 87 6 0 2936 3022 615347723 615347637 1.040000e-25 128.0
25 TraesCS6D01G401100 chr2A 93.182 88 5 1 2936 3023 654872303 654872217 1.040000e-25 128.0
26 TraesCS6D01G401100 chr2D 91.304 92 7 1 2939 3030 622916747 622916657 1.340000e-24 124.0
27 TraesCS6D01G401100 chr2D 100.000 28 0 0 1653 1680 645811401 645811374 6.000000e-03 52.8
28 TraesCS6D01G401100 chr3B 100.000 31 0 0 1 31 771760014 771759984 1.380000e-04 58.4
29 TraesCS6D01G401100 chr1D 100.000 30 0 0 4 33 290450782 290450753 4.970000e-04 56.5
30 TraesCS6D01G401100 chr1D 100.000 30 0 0 4 33 299585569 299585540 4.970000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G401100 chr6D 470572072 470575638 3566 False 6588.0 6588 100.00000 1 3567 1 chr6D.!!$F2 3566
1 TraesCS6D01G401100 chr6D 259533815 259534436 621 True 874.0 874 91.74500 1036 1677 1 chr6D.!!$R1 641
2 TraesCS6D01G401100 chr6B 720560723 720563626 2903 True 2065.5 3155 91.41100 1 2791 2 chr6B.!!$R1 2790
3 TraesCS6D01G401100 chr6A 615429701 615432807 3106 False 1031.5 2968 95.35575 692 3388 4 chr6A.!!$F3 2696
4 TraesCS6D01G401100 chr6A 615395687 615396225 538 False 699.0 699 90.18500 1 536 1 chr6A.!!$F2 535
5 TraesCS6D01G401100 chr4D 505757822 505758461 639 False 957.0 957 93.62400 1036 1678 1 chr4D.!!$F1 642
6 TraesCS6D01G401100 chr2B 48284903 48285539 636 True 937.0 937 93.14600 1036 1677 1 chr2B.!!$R1 641
7 TraesCS6D01G401100 chr1B 634899469 634900091 622 False 885.0 885 92.05600 1036 1677 1 chr1B.!!$F2 641
8 TraesCS6D01G401100 chr1B 634830459 634831081 622 False 880.0 880 91.90000 1036 1677 1 chr1B.!!$F1 641
9 TraesCS6D01G401100 chr5B 534252295 534252905 610 False 802.0 802 90.03100 1036 1677 1 chr5B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 768 0.038983 AACCGCGTAAATGGGTTTGC 60.039 50.0 4.92 0.0 41.07 3.68 F
774 791 0.852777 CGGTGTTTGTCGAGACTGTG 59.147 55.0 4.78 0.0 0.00 3.66 F
2280 2750 1.627297 GGGAGAAGGTTGAGGCGGAT 61.627 60.0 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2485 0.812412 CGACACACCTTTCCCGTTGT 60.812 55.0 0.00 0.00 0.00 3.32 R
2517 2990 1.122632 TACAGGGGAGGCGACAACAA 61.123 55.0 0.00 0.00 0.00 2.83 R
3233 3717 0.330604 AGCCCATATATGCCTGCAGG 59.669 55.0 29.34 29.34 38.53 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.692791 AAAGAGCACTTTCGGTGTTTC 57.307 42.857 3.03 0.00 46.86 2.78
59 60 1.473434 CCCCTCGACATTACCAAGCTC 60.473 57.143 0.00 0.00 0.00 4.09
80 81 5.586243 GCTCAACAAATCACCATTAGCTCTA 59.414 40.000 0.00 0.00 0.00 2.43
146 148 7.032598 AGAATTTTGGAGGATTCCTGTTCTA 57.967 36.000 10.74 0.00 44.36 2.10
150 152 4.074799 TGGAGGATTCCTGTTCTAAGGA 57.925 45.455 10.74 0.00 44.88 3.36
185 188 3.203716 GGGTGGTTTGATTCGTAGGATC 58.796 50.000 0.00 0.00 0.00 3.36
197 200 2.691526 TCGTAGGATCGCAAACCATAGT 59.308 45.455 0.00 0.00 0.00 2.12
251 255 8.688747 AGATTCCATAAGAGATTTTCATCCAC 57.311 34.615 0.00 0.00 0.00 4.02
252 256 6.925610 TTCCATAAGAGATTTTCATCCACG 57.074 37.500 0.00 0.00 0.00 4.94
274 278 5.010012 ACGCCAACATCTTTGAAAGAATCTT 59.990 36.000 12.10 0.99 41.63 2.40
279 283 9.617975 CCAACATCTTTGAAAGAATCTTAGTTC 57.382 33.333 12.10 0.00 41.63 3.01
290 294 7.516198 AAGAATCTTAGTTCTTTGTGTGCAT 57.484 32.000 0.00 0.00 43.90 3.96
294 298 9.846248 GAATCTTAGTTCTTTGTGTGCATAATT 57.154 29.630 0.00 0.00 0.00 1.40
374 379 4.785511 TTTTTCTGTTCCCGTGTTTTGA 57.214 36.364 0.00 0.00 0.00 2.69
430 435 5.759506 TTGTTGAACAACCGACATTGTAT 57.240 34.783 6.66 0.00 42.01 2.29
444 449 2.355717 TTGTATGCGTCGATGTCACA 57.644 45.000 6.48 5.37 0.00 3.58
449 454 0.815095 TGCGTCGATGTCACATAGGT 59.185 50.000 6.48 0.00 0.00 3.08
464 469 2.225382 TAGGTCCGTGAACCAGATGA 57.775 50.000 2.23 0.00 42.12 2.92
493 498 5.624159 ACCATCTCTCACTCTGATCTCTAG 58.376 45.833 0.00 0.00 0.00 2.43
559 572 1.379916 CCTTCACCCTGTGCCATCA 59.620 57.895 0.00 0.00 32.98 3.07
592 605 0.901827 ACCACATACCATCACGCTCA 59.098 50.000 0.00 0.00 0.00 4.26
605 618 1.591594 CGCTCACACCGACACACTT 60.592 57.895 0.00 0.00 0.00 3.16
607 620 1.934463 CTCACACCGACACACTTGC 59.066 57.895 0.00 0.00 0.00 4.01
608 621 1.498865 CTCACACCGACACACTTGCC 61.499 60.000 0.00 0.00 0.00 4.52
613 626 2.380410 CCGACACACTTGCCGTAGC 61.380 63.158 0.00 0.00 40.48 3.58
732 749 3.985019 TCGCCTTCCTACAATAAACCA 57.015 42.857 0.00 0.00 0.00 3.67
733 750 4.289238 TCGCCTTCCTACAATAAACCAA 57.711 40.909 0.00 0.00 0.00 3.67
734 751 4.004982 TCGCCTTCCTACAATAAACCAAC 58.995 43.478 0.00 0.00 0.00 3.77
735 752 3.128068 CGCCTTCCTACAATAAACCAACC 59.872 47.826 0.00 0.00 0.00 3.77
736 753 3.128068 GCCTTCCTACAATAAACCAACCG 59.872 47.826 0.00 0.00 0.00 4.44
737 754 3.128068 CCTTCCTACAATAAACCAACCGC 59.872 47.826 0.00 0.00 0.00 5.68
751 768 0.038983 AACCGCGTAAATGGGTTTGC 60.039 50.000 4.92 0.00 41.07 3.68
772 789 1.129326 GACGGTGTTTGTCGAGACTG 58.871 55.000 4.78 0.00 0.00 3.51
774 791 0.852777 CGGTGTTTGTCGAGACTGTG 59.147 55.000 4.78 0.00 0.00 3.66
846 865 4.553547 CGAAACCTCTGCTTCTTTCAGTTG 60.554 45.833 0.00 0.00 33.48 3.16
891 911 9.474920 TTTGCAGATTTATTGAGTTTTCGATTT 57.525 25.926 0.00 0.00 0.00 2.17
913 1045 4.816392 TGAAGAGAAATGTCGAAATCGGA 58.184 39.130 2.63 0.00 40.29 4.55
930 1062 1.635663 GGAACAGCCGTTGGATCACG 61.636 60.000 0.00 0.00 40.02 4.35
1251 1721 2.124942 GCCGCCCTCTTCCTGAAG 60.125 66.667 0.31 0.31 39.71 3.02
1522 1992 4.753662 TCCTCGGCGCCTACCACT 62.754 66.667 26.68 0.00 0.00 4.00
1872 2342 3.780173 GGCAGGAGCTTCGAGGCT 61.780 66.667 23.32 23.32 46.11 4.58
2081 2551 3.181967 CGAGGCGCTGGTCGAAAG 61.182 66.667 18.37 0.00 41.67 2.62
2130 2600 1.975407 CAAGGAGTGCCTGGCCAAG 60.975 63.158 17.53 0.23 46.28 3.61
2280 2750 1.627297 GGGAGAAGGTTGAGGCGGAT 61.627 60.000 0.00 0.00 0.00 4.18
2323 2793 3.585862 GAGATGAAAGCGTAACTCACCA 58.414 45.455 0.00 0.00 0.00 4.17
2373 2843 4.573201 TGTAAGCGGGTGATAAGTTATTGC 59.427 41.667 0.00 0.00 0.00 3.56
2517 2990 4.080356 TGCATTTCATACTACTGGGAGCTT 60.080 41.667 0.00 0.00 0.00 3.74
2520 2993 5.499004 TTTCATACTACTGGGAGCTTTGT 57.501 39.130 0.00 0.00 0.00 2.83
2530 3003 1.578206 GGAGCTTTGTTGTCGCCTCC 61.578 60.000 0.00 0.00 0.00 4.30
2631 3111 7.413438 GGTGCTTTAGATATTGTTCTCTGTGTG 60.413 40.741 0.00 0.00 0.00 3.82
2748 3228 8.755977 ACTGCTCATTTAAAGGATTGAATCAAT 58.244 29.630 8.39 8.39 36.72 2.57
2765 3245 6.748658 TGAATCAATCGATTGCTTGATTTCAC 59.251 34.615 29.32 14.45 45.83 3.18
2821 3301 6.259608 ACTCAATCCTGCTCTTTCATATTTCG 59.740 38.462 0.00 0.00 0.00 3.46
2878 3358 1.476488 CCCGGTATTTTGCAAAGGAGG 59.524 52.381 12.41 11.96 0.00 4.30
2901 3381 8.757982 AGGTTGCAGATATTTATGATTCAACT 57.242 30.769 0.00 0.00 33.78 3.16
2902 3382 8.627403 AGGTTGCAGATATTTATGATTCAACTG 58.373 33.333 0.00 0.00 33.78 3.16
2916 3396 4.729227 TTCAACTGTTTCCTTTGTTCCC 57.271 40.909 0.00 0.00 0.00 3.97
2917 3397 3.702792 TCAACTGTTTCCTTTGTTCCCA 58.297 40.909 0.00 0.00 0.00 4.37
2918 3398 3.445805 TCAACTGTTTCCTTTGTTCCCAC 59.554 43.478 0.00 0.00 0.00 4.61
2919 3399 2.384828 ACTGTTTCCTTTGTTCCCACC 58.615 47.619 0.00 0.00 0.00 4.61
2940 3423 7.148239 CCCACCAAGTATTTTTCTCACATACTC 60.148 40.741 0.00 0.00 33.44 2.59
2941 3424 7.148239 CCACCAAGTATTTTTCTCACATACTCC 60.148 40.741 0.00 0.00 33.44 3.85
2942 3425 6.884836 ACCAAGTATTTTTCTCACATACTCCC 59.115 38.462 0.00 0.00 33.44 4.30
2943 3426 7.112779 CCAAGTATTTTTCTCACATACTCCCT 58.887 38.462 0.00 0.00 33.44 4.20
2944 3427 7.281100 CCAAGTATTTTTCTCACATACTCCCTC 59.719 40.741 0.00 0.00 33.44 4.30
2945 3428 7.741554 AGTATTTTTCTCACATACTCCCTCT 57.258 36.000 0.00 0.00 29.31 3.69
2946 3429 7.560368 AGTATTTTTCTCACATACTCCCTCTG 58.440 38.462 0.00 0.00 29.31 3.35
2947 3430 5.825593 TTTTTCTCACATACTCCCTCTGT 57.174 39.130 0.00 0.00 0.00 3.41
2948 3431 5.407407 TTTTCTCACATACTCCCTCTGTC 57.593 43.478 0.00 0.00 0.00 3.51
2949 3432 3.019799 TCTCACATACTCCCTCTGTCC 57.980 52.381 0.00 0.00 0.00 4.02
2950 3433 2.311841 TCTCACATACTCCCTCTGTCCA 59.688 50.000 0.00 0.00 0.00 4.02
2951 3434 3.099905 CTCACATACTCCCTCTGTCCAA 58.900 50.000 0.00 0.00 0.00 3.53
2952 3435 3.515502 CTCACATACTCCCTCTGTCCAAA 59.484 47.826 0.00 0.00 0.00 3.28
2953 3436 3.907474 TCACATACTCCCTCTGTCCAAAA 59.093 43.478 0.00 0.00 0.00 2.44
2954 3437 4.349636 TCACATACTCCCTCTGTCCAAAAA 59.650 41.667 0.00 0.00 0.00 1.94
2955 3438 5.014123 TCACATACTCCCTCTGTCCAAAAAT 59.986 40.000 0.00 0.00 0.00 1.82
2956 3439 6.214615 TCACATACTCCCTCTGTCCAAAAATA 59.785 38.462 0.00 0.00 0.00 1.40
2957 3440 6.884295 CACATACTCCCTCTGTCCAAAAATAA 59.116 38.462 0.00 0.00 0.00 1.40
2958 3441 7.066284 CACATACTCCCTCTGTCCAAAAATAAG 59.934 40.741 0.00 0.00 0.00 1.73
2959 3442 5.584551 ACTCCCTCTGTCCAAAAATAAGT 57.415 39.130 0.00 0.00 0.00 2.24
2960 3443 5.316987 ACTCCCTCTGTCCAAAAATAAGTG 58.683 41.667 0.00 0.00 0.00 3.16
2961 3444 5.163088 ACTCCCTCTGTCCAAAAATAAGTGT 60.163 40.000 0.00 0.00 0.00 3.55
2962 3445 5.313712 TCCCTCTGTCCAAAAATAAGTGTC 58.686 41.667 0.00 0.00 0.00 3.67
2963 3446 5.073144 TCCCTCTGTCCAAAAATAAGTGTCT 59.927 40.000 0.00 0.00 0.00 3.41
2964 3447 5.412904 CCCTCTGTCCAAAAATAAGTGTCTC 59.587 44.000 0.00 0.00 0.00 3.36
2965 3448 5.997746 CCTCTGTCCAAAAATAAGTGTCTCA 59.002 40.000 0.00 0.00 0.00 3.27
2966 3449 6.486657 CCTCTGTCCAAAAATAAGTGTCTCAA 59.513 38.462 0.00 0.00 0.00 3.02
2967 3450 7.259290 TCTGTCCAAAAATAAGTGTCTCAAC 57.741 36.000 0.00 0.00 0.00 3.18
2968 3451 7.054124 TCTGTCCAAAAATAAGTGTCTCAACT 58.946 34.615 0.00 0.00 0.00 3.16
2969 3452 7.556275 TCTGTCCAAAAATAAGTGTCTCAACTT 59.444 33.333 0.00 0.00 42.89 2.66
2970 3453 8.062065 TGTCCAAAAATAAGTGTCTCAACTTT 57.938 30.769 0.00 0.00 40.77 2.66
2971 3454 9.179909 TGTCCAAAAATAAGTGTCTCAACTTTA 57.820 29.630 0.00 0.00 40.77 1.85
2972 3455 9.665264 GTCCAAAAATAAGTGTCTCAACTTTAG 57.335 33.333 0.00 0.00 40.77 1.85
2973 3456 9.403583 TCCAAAAATAAGTGTCTCAACTTTAGT 57.596 29.630 0.00 0.00 40.77 2.24
2997 3480 6.663944 ACAAAGTTGTACTGAAGTTGAGAC 57.336 37.500 0.00 0.00 40.16 3.36
2998 3481 6.170506 ACAAAGTTGTACTGAAGTTGAGACA 58.829 36.000 0.00 0.00 40.16 3.41
2999 3482 6.092259 ACAAAGTTGTACTGAAGTTGAGACAC 59.908 38.462 0.00 0.00 40.16 3.67
3000 3483 5.599999 AGTTGTACTGAAGTTGAGACACT 57.400 39.130 0.00 0.00 0.00 3.55
3001 3484 5.978814 AGTTGTACTGAAGTTGAGACACTT 58.021 37.500 0.00 0.00 39.84 3.16
3002 3485 7.108841 AGTTGTACTGAAGTTGAGACACTTA 57.891 36.000 0.00 0.00 37.11 2.24
3003 3486 7.727181 AGTTGTACTGAAGTTGAGACACTTAT 58.273 34.615 0.00 0.00 37.11 1.73
3004 3487 8.204836 AGTTGTACTGAAGTTGAGACACTTATT 58.795 33.333 0.00 0.00 37.11 1.40
3005 3488 8.827677 GTTGTACTGAAGTTGAGACACTTATTT 58.172 33.333 0.00 0.00 37.11 1.40
3006 3489 8.958119 TGTACTGAAGTTGAGACACTTATTTT 57.042 30.769 0.00 0.00 37.11 1.82
3007 3490 8.826710 TGTACTGAAGTTGAGACACTTATTTTG 58.173 33.333 0.00 0.00 37.11 2.44
3008 3491 7.264373 ACTGAAGTTGAGACACTTATTTTGG 57.736 36.000 0.00 0.00 37.11 3.28
3009 3492 6.263168 ACTGAAGTTGAGACACTTATTTTGGG 59.737 38.462 0.00 0.00 37.11 4.12
3010 3493 6.361433 TGAAGTTGAGACACTTATTTTGGGA 58.639 36.000 0.00 0.00 37.11 4.37
3011 3494 6.262273 TGAAGTTGAGACACTTATTTTGGGAC 59.738 38.462 0.00 0.00 37.11 4.46
3012 3495 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3013 3496 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3014 3497 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3015 3498 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3016 3499 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3017 3500 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3018 3501 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3019 3502 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3020 3503 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3066 3549 5.819901 GCTCAGTGCATAGGATAGTTCTTTT 59.180 40.000 0.00 0.00 42.31 2.27
3075 3558 9.202273 GCATAGGATAGTTCTTTTCTCACATAG 57.798 37.037 0.00 0.00 0.00 2.23
3102 3585 7.701539 AGGTATTTGCATTGTGACTAATTGA 57.298 32.000 0.00 0.00 0.00 2.57
3154 3638 1.434555 TGAGTTGCCGGTTTATCACG 58.565 50.000 1.90 0.00 0.00 4.35
3217 3701 5.179182 CGGCTATATGAACATGTGTATGCAA 59.821 40.000 0.00 0.00 37.85 4.08
3227 3711 4.333649 ACATGTGTATGCAATGTAGTCTGC 59.666 41.667 0.00 0.00 37.85 4.26
3228 3712 4.206477 TGTGTATGCAATGTAGTCTGCT 57.794 40.909 0.00 0.00 39.38 4.24
3229 3713 3.934579 TGTGTATGCAATGTAGTCTGCTG 59.065 43.478 0.00 0.00 39.38 4.41
3230 3714 2.938451 TGTATGCAATGTAGTCTGCTGC 59.062 45.455 0.00 0.00 39.38 5.25
3231 3715 2.118313 ATGCAATGTAGTCTGCTGCA 57.882 45.000 0.88 0.88 46.20 4.41
3232 3716 1.445871 TGCAATGTAGTCTGCTGCAG 58.554 50.000 23.31 23.31 40.52 4.41
3233 3717 0.098376 GCAATGTAGTCTGCTGCAGC 59.902 55.000 31.89 31.89 40.52 5.25
3270 3754 5.271598 TGGGCTTGAATTCAGGATTATGTT 58.728 37.500 20.77 0.00 0.00 2.71
3305 3789 1.300971 TTCTGTGCTGCGCAGGAATC 61.301 55.000 36.47 23.94 41.68 2.52
3306 3790 2.032376 TGTGCTGCGCAGGAATCA 59.968 55.556 36.47 26.21 40.08 2.57
3308 3792 1.354506 GTGCTGCGCAGGAATCATC 59.645 57.895 36.47 19.25 40.08 2.92
3309 3793 2.175621 TGCTGCGCAGGAATCATCG 61.176 57.895 36.47 11.37 33.32 3.84
3310 3794 2.630317 CTGCGCAGGAATCATCGC 59.370 61.111 29.88 6.17 46.78 4.58
3312 3796 3.337619 GCGCAGGAATCATCGCAT 58.662 55.556 0.30 0.00 45.99 4.73
3314 3798 1.501337 GCGCAGGAATCATCGCATCA 61.501 55.000 0.30 0.00 45.99 3.07
3315 3799 0.939419 CGCAGGAATCATCGCATCAA 59.061 50.000 0.00 0.00 0.00 2.57
3316 3800 1.333524 CGCAGGAATCATCGCATCAAC 60.334 52.381 0.00 0.00 0.00 3.18
3317 3801 1.945394 GCAGGAATCATCGCATCAACT 59.055 47.619 0.00 0.00 0.00 3.16
3318 3802 2.286831 GCAGGAATCATCGCATCAACTG 60.287 50.000 0.00 0.00 0.00 3.16
3319 3803 2.941064 CAGGAATCATCGCATCAACTGT 59.059 45.455 0.00 0.00 0.00 3.55
3320 3804 3.376234 CAGGAATCATCGCATCAACTGTT 59.624 43.478 0.00 0.00 0.00 3.16
3321 3805 3.376234 AGGAATCATCGCATCAACTGTTG 59.624 43.478 14.24 14.24 0.00 3.33
3322 3806 3.127548 GGAATCATCGCATCAACTGTTGT 59.872 43.478 19.12 5.28 0.00 3.32
3323 3807 4.379813 GGAATCATCGCATCAACTGTTGTT 60.380 41.667 19.12 9.20 36.75 2.83
3324 3808 4.771590 ATCATCGCATCAACTGTTGTTT 57.228 36.364 19.12 6.66 33.52 2.83
3325 3809 4.566545 TCATCGCATCAACTGTTGTTTT 57.433 36.364 19.12 4.34 33.52 2.43
3326 3810 4.536065 TCATCGCATCAACTGTTGTTTTC 58.464 39.130 19.12 7.38 33.52 2.29
3327 3811 2.980586 TCGCATCAACTGTTGTTTTCG 58.019 42.857 19.12 16.76 33.52 3.46
3328 3812 2.353269 TCGCATCAACTGTTGTTTTCGT 59.647 40.909 19.12 0.00 33.52 3.85
3329 3813 3.556365 TCGCATCAACTGTTGTTTTCGTA 59.444 39.130 19.12 0.00 33.52 3.43
3330 3814 3.657625 CGCATCAACTGTTGTTTTCGTAC 59.342 43.478 19.12 2.73 33.52 3.67
3358 3993 5.949354 TGGCTAAGTATATTTTGCTGTGGTT 59.051 36.000 12.58 0.00 0.00 3.67
3388 4023 4.222124 ACTGCTAAGTGGGAATAACCAG 57.778 45.455 0.00 0.00 42.20 4.00
3389 4024 3.587506 ACTGCTAAGTGGGAATAACCAGT 59.412 43.478 0.00 0.00 45.99 4.00
3395 4030 4.724279 AGTGGGAATAACCAGTTTCAGT 57.276 40.909 0.00 0.00 41.36 3.41
3396 4031 5.061721 AGTGGGAATAACCAGTTTCAGTT 57.938 39.130 0.00 0.00 41.36 3.16
3397 4032 5.070685 AGTGGGAATAACCAGTTTCAGTTC 58.929 41.667 0.00 0.00 41.36 3.01
3398 4033 5.070685 GTGGGAATAACCAGTTTCAGTTCT 58.929 41.667 0.00 0.00 42.20 3.01
3399 4034 5.181433 GTGGGAATAACCAGTTTCAGTTCTC 59.819 44.000 0.00 0.00 42.20 2.87
3400 4035 5.073144 TGGGAATAACCAGTTTCAGTTCTCT 59.927 40.000 0.00 0.00 41.20 3.10
3401 4036 5.412904 GGGAATAACCAGTTTCAGTTCTCTG 59.587 44.000 0.00 0.00 40.59 3.35
3402 4037 5.106515 GGAATAACCAGTTTCAGTTCTCTGC 60.107 44.000 0.00 0.00 38.80 4.26
3403 4038 3.567478 AACCAGTTTCAGTTCTCTGCT 57.433 42.857 0.00 0.00 41.10 4.24
3404 4039 3.567478 ACCAGTTTCAGTTCTCTGCTT 57.433 42.857 0.00 0.00 41.10 3.91
3405 4040 3.209410 ACCAGTTTCAGTTCTCTGCTTG 58.791 45.455 0.00 0.00 41.10 4.01
3406 4041 3.118261 ACCAGTTTCAGTTCTCTGCTTGA 60.118 43.478 0.00 0.00 41.10 3.02
3407 4042 3.879295 CCAGTTTCAGTTCTCTGCTTGAA 59.121 43.478 0.00 0.00 41.10 2.69
3408 4043 4.518211 CCAGTTTCAGTTCTCTGCTTGAAT 59.482 41.667 0.00 0.00 41.10 2.57
3409 4044 5.334724 CCAGTTTCAGTTCTCTGCTTGAATC 60.335 44.000 0.00 0.00 41.10 2.52
3410 4045 4.759183 AGTTTCAGTTCTCTGCTTGAATCC 59.241 41.667 0.00 0.00 41.10 3.01
3411 4046 4.630644 TTCAGTTCTCTGCTTGAATCCT 57.369 40.909 0.00 0.00 41.10 3.24
3412 4047 4.630644 TCAGTTCTCTGCTTGAATCCTT 57.369 40.909 0.00 0.00 41.10 3.36
3413 4048 4.978099 TCAGTTCTCTGCTTGAATCCTTT 58.022 39.130 0.00 0.00 41.10 3.11
3414 4049 4.758674 TCAGTTCTCTGCTTGAATCCTTTG 59.241 41.667 0.00 0.00 41.10 2.77
3415 4050 4.077822 AGTTCTCTGCTTGAATCCTTTGG 58.922 43.478 0.00 0.00 0.00 3.28
3416 4051 3.077484 TCTCTGCTTGAATCCTTTGGG 57.923 47.619 0.00 0.00 0.00 4.12
3417 4052 2.644299 TCTCTGCTTGAATCCTTTGGGA 59.356 45.455 0.00 0.00 46.81 4.37
3418 4053 3.074390 TCTCTGCTTGAATCCTTTGGGAA 59.926 43.478 0.00 0.00 45.78 3.97
3419 4054 3.828451 CTCTGCTTGAATCCTTTGGGAAA 59.172 43.478 0.00 0.00 45.78 3.13
3420 4055 4.419282 TCTGCTTGAATCCTTTGGGAAAT 58.581 39.130 0.00 0.00 45.78 2.17
3421 4056 4.221262 TCTGCTTGAATCCTTTGGGAAATG 59.779 41.667 0.00 0.00 45.78 2.32
3422 4057 3.903090 TGCTTGAATCCTTTGGGAAATGT 59.097 39.130 0.00 0.00 45.78 2.71
3423 4058 5.083122 TGCTTGAATCCTTTGGGAAATGTA 58.917 37.500 0.00 0.00 45.78 2.29
3424 4059 5.721000 TGCTTGAATCCTTTGGGAAATGTAT 59.279 36.000 0.00 0.00 45.78 2.29
3425 4060 6.894654 TGCTTGAATCCTTTGGGAAATGTATA 59.105 34.615 0.00 0.00 45.78 1.47
3426 4061 7.564660 TGCTTGAATCCTTTGGGAAATGTATAT 59.435 33.333 0.00 0.00 45.78 0.86
3427 4062 9.077885 GCTTGAATCCTTTGGGAAATGTATATA 57.922 33.333 0.00 0.00 45.78 0.86
3429 4064 9.586732 TTGAATCCTTTGGGAAATGTATATAGG 57.413 33.333 0.00 0.00 45.78 2.57
3430 4065 8.732854 TGAATCCTTTGGGAAATGTATATAGGT 58.267 33.333 0.00 0.00 45.78 3.08
3431 4066 9.232473 GAATCCTTTGGGAAATGTATATAGGTC 57.768 37.037 0.00 0.00 45.78 3.85
3432 4067 7.699709 TCCTTTGGGAAATGTATATAGGTCA 57.300 36.000 0.00 0.00 38.93 4.02
3433 4068 7.745717 TCCTTTGGGAAATGTATATAGGTCAG 58.254 38.462 0.00 0.00 38.93 3.51
3434 4069 7.570982 TCCTTTGGGAAATGTATATAGGTCAGA 59.429 37.037 0.00 0.00 38.93 3.27
3435 4070 8.217799 CCTTTGGGAAATGTATATAGGTCAGAA 58.782 37.037 0.00 0.00 33.58 3.02
3436 4071 8.974060 TTTGGGAAATGTATATAGGTCAGAAC 57.026 34.615 0.00 0.00 0.00 3.01
3437 4072 7.931015 TGGGAAATGTATATAGGTCAGAACT 57.069 36.000 0.00 0.00 0.00 3.01
3438 4073 7.735917 TGGGAAATGTATATAGGTCAGAACTG 58.264 38.462 0.00 0.00 0.00 3.16
3439 4074 7.162082 GGGAAATGTATATAGGTCAGAACTGG 58.838 42.308 0.00 0.00 0.00 4.00
3440 4075 7.202102 GGGAAATGTATATAGGTCAGAACTGGT 60.202 40.741 0.00 0.00 0.00 4.00
3441 4076 8.211629 GGAAATGTATATAGGTCAGAACTGGTT 58.788 37.037 0.00 0.00 0.00 3.67
3442 4077 9.262358 GAAATGTATATAGGTCAGAACTGGTTC 57.738 37.037 0.00 5.43 39.78 3.62
3444 4079 7.584122 TGTATATAGGTCAGAACTGGTTCTC 57.416 40.000 12.40 3.85 46.13 2.87
3445 4080 5.776173 ATATAGGTCAGAACTGGTTCTCG 57.224 43.478 12.40 9.01 46.13 4.04
3446 4081 0.969894 AGGTCAGAACTGGTTCTCGG 59.030 55.000 12.40 4.20 46.13 4.63
3447 4082 0.680061 GGTCAGAACTGGTTCTCGGT 59.320 55.000 12.40 0.00 46.13 4.69
3448 4083 1.336980 GGTCAGAACTGGTTCTCGGTC 60.337 57.143 12.40 2.38 46.13 4.79
3449 4084 1.614413 GTCAGAACTGGTTCTCGGTCT 59.386 52.381 12.40 0.00 46.13 3.85
3450 4085 1.887198 TCAGAACTGGTTCTCGGTCTC 59.113 52.381 12.40 0.00 46.13 3.36
3451 4086 1.889829 CAGAACTGGTTCTCGGTCTCT 59.110 52.381 12.40 0.00 46.13 3.10
3452 4087 2.297597 CAGAACTGGTTCTCGGTCTCTT 59.702 50.000 12.40 0.00 46.13 2.85
3453 4088 2.966516 AGAACTGGTTCTCGGTCTCTTT 59.033 45.455 9.85 0.00 46.13 2.52
3454 4089 4.022242 CAGAACTGGTTCTCGGTCTCTTTA 60.022 45.833 12.40 0.00 46.13 1.85
3455 4090 3.938289 ACTGGTTCTCGGTCTCTTTAC 57.062 47.619 0.00 0.00 0.00 2.01
3456 4091 3.498334 ACTGGTTCTCGGTCTCTTTACT 58.502 45.455 0.00 0.00 0.00 2.24
3457 4092 3.256136 ACTGGTTCTCGGTCTCTTTACTG 59.744 47.826 0.00 0.00 0.00 2.74
3458 4093 2.561419 TGGTTCTCGGTCTCTTTACTGG 59.439 50.000 0.00 0.00 0.00 4.00
3459 4094 2.561858 GGTTCTCGGTCTCTTTACTGGT 59.438 50.000 0.00 0.00 0.00 4.00
3460 4095 3.760684 GGTTCTCGGTCTCTTTACTGGTA 59.239 47.826 0.00 0.00 0.00 3.25
3461 4096 4.401837 GGTTCTCGGTCTCTTTACTGGTAT 59.598 45.833 0.00 0.00 0.00 2.73
3462 4097 5.591877 GGTTCTCGGTCTCTTTACTGGTATA 59.408 44.000 0.00 0.00 0.00 1.47
3463 4098 6.096001 GGTTCTCGGTCTCTTTACTGGTATAA 59.904 42.308 0.00 0.00 0.00 0.98
3464 4099 7.363268 GGTTCTCGGTCTCTTTACTGGTATAAA 60.363 40.741 0.00 0.00 0.00 1.40
3465 4100 7.707624 TCTCGGTCTCTTTACTGGTATAAAA 57.292 36.000 0.00 0.00 0.00 1.52
3466 4101 7.769220 TCTCGGTCTCTTTACTGGTATAAAAG 58.231 38.462 0.00 0.00 0.00 2.27
3467 4102 7.395489 TCTCGGTCTCTTTACTGGTATAAAAGT 59.605 37.037 0.00 0.00 33.07 2.66
3468 4103 8.579850 TCGGTCTCTTTACTGGTATAAAAGTA 57.420 34.615 0.00 0.00 33.07 2.24
3469 4104 9.193806 TCGGTCTCTTTACTGGTATAAAAGTAT 57.806 33.333 0.00 0.00 33.07 2.12
3470 4105 9.245962 CGGTCTCTTTACTGGTATAAAAGTATG 57.754 37.037 0.00 0.00 33.07 2.39
3471 4106 9.543783 GGTCTCTTTACTGGTATAAAAGTATGG 57.456 37.037 0.00 0.00 33.07 2.74
3476 4111 9.765795 CTTTACTGGTATAAAAGTATGGAGAGG 57.234 37.037 0.00 0.00 0.00 3.69
3477 4112 8.849543 TTACTGGTATAAAAGTATGGAGAGGT 57.150 34.615 0.00 0.00 0.00 3.85
3478 4113 7.750947 ACTGGTATAAAAGTATGGAGAGGTT 57.249 36.000 0.00 0.00 0.00 3.50
3479 4114 7.565680 ACTGGTATAAAAGTATGGAGAGGTTG 58.434 38.462 0.00 0.00 0.00 3.77
3480 4115 7.182206 ACTGGTATAAAAGTATGGAGAGGTTGT 59.818 37.037 0.00 0.00 0.00 3.32
3481 4116 7.335627 TGGTATAAAAGTATGGAGAGGTTGTG 58.664 38.462 0.00 0.00 0.00 3.33
3482 4117 7.181305 TGGTATAAAAGTATGGAGAGGTTGTGA 59.819 37.037 0.00 0.00 0.00 3.58
3483 4118 8.211629 GGTATAAAAGTATGGAGAGGTTGTGAT 58.788 37.037 0.00 0.00 0.00 3.06
3486 4121 4.946478 AGTATGGAGAGGTTGTGATAGC 57.054 45.455 0.00 0.00 0.00 2.97
3487 4122 4.551671 AGTATGGAGAGGTTGTGATAGCT 58.448 43.478 0.00 0.00 0.00 3.32
3488 4123 3.834489 ATGGAGAGGTTGTGATAGCTG 57.166 47.619 0.00 0.00 0.00 4.24
3489 4124 1.833630 TGGAGAGGTTGTGATAGCTGG 59.166 52.381 0.00 0.00 0.00 4.85
3490 4125 1.139853 GGAGAGGTTGTGATAGCTGGG 59.860 57.143 0.00 0.00 0.00 4.45
3491 4126 2.111384 GAGAGGTTGTGATAGCTGGGA 58.889 52.381 0.00 0.00 0.00 4.37
3492 4127 2.703007 GAGAGGTTGTGATAGCTGGGAT 59.297 50.000 0.00 0.00 0.00 3.85
3493 4128 2.703007 AGAGGTTGTGATAGCTGGGATC 59.297 50.000 0.00 0.00 0.00 3.36
3494 4129 1.771255 AGGTTGTGATAGCTGGGATCC 59.229 52.381 1.92 1.92 0.00 3.36
3495 4130 1.541233 GGTTGTGATAGCTGGGATCCG 60.541 57.143 5.45 0.00 0.00 4.18
3496 4131 1.139058 GTTGTGATAGCTGGGATCCGT 59.861 52.381 5.45 0.00 0.00 4.69
3497 4132 0.752658 TGTGATAGCTGGGATCCGTG 59.247 55.000 5.45 1.70 0.00 4.94
3498 4133 1.040646 GTGATAGCTGGGATCCGTGA 58.959 55.000 5.45 0.00 0.00 4.35
3499 4134 1.000283 GTGATAGCTGGGATCCGTGAG 60.000 57.143 5.45 2.63 0.00 3.51
3511 4146 4.379243 CGTGAGGGGCGCTCTGTT 62.379 66.667 28.62 0.00 0.00 3.16
3512 4147 2.032681 GTGAGGGGCGCTCTGTTT 59.967 61.111 28.62 0.00 0.00 2.83
3513 4148 1.600916 GTGAGGGGCGCTCTGTTTT 60.601 57.895 28.62 0.00 0.00 2.43
3514 4149 1.302511 TGAGGGGCGCTCTGTTTTC 60.303 57.895 28.62 5.52 0.00 2.29
3515 4150 2.358737 AGGGGCGCTCTGTTTTCG 60.359 61.111 7.48 0.00 0.00 3.46
3516 4151 2.668550 GGGGCGCTCTGTTTTCGT 60.669 61.111 7.48 0.00 0.00 3.85
3517 4152 1.375013 GGGGCGCTCTGTTTTCGTA 60.375 57.895 7.48 0.00 0.00 3.43
3518 4153 0.743345 GGGGCGCTCTGTTTTCGTAT 60.743 55.000 7.48 0.00 0.00 3.06
3519 4154 1.472026 GGGGCGCTCTGTTTTCGTATA 60.472 52.381 7.48 0.00 0.00 1.47
3520 4155 2.480845 GGGCGCTCTGTTTTCGTATAT 58.519 47.619 7.64 0.00 0.00 0.86
3521 4156 3.553508 GGGGCGCTCTGTTTTCGTATATA 60.554 47.826 7.48 0.00 0.00 0.86
3522 4157 3.427863 GGGCGCTCTGTTTTCGTATATAC 59.572 47.826 7.64 2.53 0.00 1.47
3562 4197 7.373493 AGATCATGTTTTTGACTTGTTCATCC 58.627 34.615 0.00 0.00 35.86 3.51
3563 4198 6.713762 TCATGTTTTTGACTTGTTCATCCT 57.286 33.333 0.00 0.00 35.51 3.24
3564 4199 6.506147 TCATGTTTTTGACTTGTTCATCCTG 58.494 36.000 0.00 0.00 35.51 3.86
3565 4200 5.913137 TGTTTTTGACTTGTTCATCCTGT 57.087 34.783 0.00 0.00 32.84 4.00
3566 4201 5.649557 TGTTTTTGACTTGTTCATCCTGTG 58.350 37.500 0.00 0.00 32.84 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.012051 GCTTGGTAATGTCGAGGGGTG 61.012 57.143 0.00 0.00 0.00 4.61
59 60 6.820656 AGACTAGAGCTAATGGTGATTTGTTG 59.179 38.462 0.00 0.00 0.00 3.33
80 81 6.203072 TCCAAGAAGCCCTAATACTTAGACT 58.797 40.000 0.00 0.00 35.20 3.24
157 159 3.517901 ACGAATCAAACCACCCATAGAGA 59.482 43.478 0.00 0.00 0.00 3.10
158 160 3.873910 ACGAATCAAACCACCCATAGAG 58.126 45.455 0.00 0.00 0.00 2.43
159 161 3.992943 ACGAATCAAACCACCCATAGA 57.007 42.857 0.00 0.00 0.00 1.98
160 162 4.127171 CCTACGAATCAAACCACCCATAG 58.873 47.826 0.00 0.00 0.00 2.23
161 163 3.775866 TCCTACGAATCAAACCACCCATA 59.224 43.478 0.00 0.00 0.00 2.74
162 164 2.574369 TCCTACGAATCAAACCACCCAT 59.426 45.455 0.00 0.00 0.00 4.00
251 255 5.051891 AGATTCTTTCAAAGATGTTGGCG 57.948 39.130 0.00 0.00 37.38 5.69
252 256 7.597386 ACTAAGATTCTTTCAAAGATGTTGGC 58.403 34.615 0.00 0.00 37.38 4.52
274 278 8.334263 TGATCAATTATGCACACAAAGAACTA 57.666 30.769 0.00 0.00 0.00 2.24
279 283 7.640616 TGTTTGATCAATTATGCACACAAAG 57.359 32.000 9.40 0.00 0.00 2.77
282 286 6.153170 AGGATGTTTGATCAATTATGCACACA 59.847 34.615 9.40 8.30 0.00 3.72
283 287 6.567050 AGGATGTTTGATCAATTATGCACAC 58.433 36.000 9.40 2.35 0.00 3.82
294 298 6.889177 TGCAAGGTTATAAGGATGTTTGATCA 59.111 34.615 0.00 0.00 0.00 2.92
358 363 4.048504 GGATTTTCAAAACACGGGAACAG 58.951 43.478 0.00 0.00 0.00 3.16
374 379 6.389906 CAACCTCTTTAATTCGCAGGATTTT 58.610 36.000 0.00 0.00 0.00 1.82
411 416 3.364465 CGCATACAATGTCGGTTGTTCAA 60.364 43.478 6.98 0.00 42.08 2.69
430 435 0.815095 ACCTATGTGACATCGACGCA 59.185 50.000 0.00 0.00 0.00 5.24
444 449 2.431057 GTCATCTGGTTCACGGACCTAT 59.569 50.000 0.00 0.00 40.47 2.57
449 454 0.038618 CGTGTCATCTGGTTCACGGA 60.039 55.000 8.36 0.00 46.12 4.69
464 469 2.230025 CAGAGTGAGAGATGGTTCGTGT 59.770 50.000 0.00 0.00 0.00 4.49
493 498 1.212616 GACACATGGATCTGCGCTAC 58.787 55.000 9.73 0.00 0.00 3.58
536 541 2.839098 CACAGGGTGAAGGCAGGT 59.161 61.111 0.00 0.00 35.23 4.00
573 586 0.901827 TGAGCGTGATGGTATGTGGT 59.098 50.000 0.00 0.00 0.00 4.16
732 749 0.038983 GCAAACCCATTTACGCGGTT 60.039 50.000 12.47 0.00 41.68 4.44
733 750 0.891904 AGCAAACCCATTTACGCGGT 60.892 50.000 12.47 0.00 0.00 5.68
734 751 0.455972 CAGCAAACCCATTTACGCGG 60.456 55.000 12.47 0.00 0.00 6.46
735 752 0.519519 TCAGCAAACCCATTTACGCG 59.480 50.000 3.53 3.53 0.00 6.01
736 753 1.727857 CGTCAGCAAACCCATTTACGC 60.728 52.381 0.00 0.00 0.00 4.42
737 754 1.135803 CCGTCAGCAAACCCATTTACG 60.136 52.381 0.00 0.00 0.00 3.18
751 768 1.129326 GTCTCGACAAACACCGTCAG 58.871 55.000 0.00 0.00 32.72 3.51
821 840 1.873591 GAAAGAAGCAGAGGTTTCGCA 59.126 47.619 0.00 0.00 39.03 5.10
832 851 1.888512 GGATGCCAACTGAAAGAAGCA 59.111 47.619 0.00 0.00 39.95 3.91
881 901 7.069569 TCGACATTTCTCTTCAAATCGAAAAC 58.930 34.615 0.00 0.00 31.71 2.43
891 911 4.816392 TCCGATTTCGACATTTCTCTTCA 58.184 39.130 0.67 0.00 43.02 3.02
913 1045 0.670546 CTCGTGATCCAACGGCTGTT 60.671 55.000 4.68 4.68 43.73 3.16
930 1062 0.809385 TGATCTCGTCCGTTCACCTC 59.191 55.000 0.00 0.00 0.00 3.85
1275 1745 4.162690 AAGATGGAGCGGTCGCCC 62.163 66.667 11.95 12.76 43.17 6.13
2015 2485 0.812412 CGACACACCTTTCCCGTTGT 60.812 55.000 0.00 0.00 0.00 3.32
2081 2551 2.051345 CAGGGACAAACGCGTTGC 60.051 61.111 27.34 17.35 41.31 4.17
2402 2872 2.942376 AGCACATGAAGAAACACGAACA 59.058 40.909 0.00 0.00 0.00 3.18
2406 2876 3.038017 CACAAGCACATGAAGAAACACG 58.962 45.455 0.00 0.00 0.00 4.49
2503 2976 3.305813 CGACAACAAAGCTCCCAGTAGTA 60.306 47.826 0.00 0.00 0.00 1.82
2517 2990 1.122632 TACAGGGGAGGCGACAACAA 61.123 55.000 0.00 0.00 0.00 2.83
2520 2993 1.987855 CCTACAGGGGAGGCGACAA 60.988 63.158 0.00 0.00 0.00 3.18
2599 3075 7.624549 AGAACAATATCTAAAGCACCAAGAGA 58.375 34.615 0.00 0.00 0.00 3.10
2631 3111 1.973812 GCCCACTGCTCCCAAAGTC 60.974 63.158 0.00 0.00 36.87 3.01
2748 3228 6.011476 TGAATTGTGAAATCAAGCAATCGA 57.989 33.333 0.00 0.00 31.95 3.59
2821 3301 9.698617 GTTCACGTTCATAAATTCAATACTACC 57.301 33.333 0.00 0.00 0.00 3.18
2841 3321 1.796459 CGGGTAAAAGGACTGTTCACG 59.204 52.381 0.00 0.00 0.00 4.35
2878 3358 9.793252 AACAGTTGAATCATAAATATCTGCAAC 57.207 29.630 0.00 0.00 34.83 4.17
2901 3381 2.534042 TGGTGGGAACAAAGGAAACA 57.466 45.000 0.00 0.00 46.06 2.83
2902 3382 2.764010 ACTTGGTGGGAACAAAGGAAAC 59.236 45.455 0.00 0.00 46.06 2.78
2905 3385 4.463050 AATACTTGGTGGGAACAAAGGA 57.537 40.909 0.00 0.00 46.06 3.36
2916 3396 7.148239 GGGAGTATGTGAGAAAAATACTTGGTG 60.148 40.741 0.00 0.00 37.27 4.17
2917 3397 6.884836 GGGAGTATGTGAGAAAAATACTTGGT 59.115 38.462 0.00 0.00 37.27 3.67
2918 3398 7.112779 AGGGAGTATGTGAGAAAAATACTTGG 58.887 38.462 0.00 0.00 37.27 3.61
2919 3399 8.043710 AGAGGGAGTATGTGAGAAAAATACTTG 58.956 37.037 0.00 0.00 37.27 3.16
2940 3423 5.316987 AGACACTTATTTTTGGACAGAGGG 58.683 41.667 0.00 0.00 0.00 4.30
2941 3424 5.997746 TGAGACACTTATTTTTGGACAGAGG 59.002 40.000 0.00 0.00 0.00 3.69
2942 3425 7.227512 AGTTGAGACACTTATTTTTGGACAGAG 59.772 37.037 0.00 0.00 0.00 3.35
2943 3426 7.054124 AGTTGAGACACTTATTTTTGGACAGA 58.946 34.615 0.00 0.00 0.00 3.41
2944 3427 7.264373 AGTTGAGACACTTATTTTTGGACAG 57.736 36.000 0.00 0.00 0.00 3.51
2945 3428 7.639113 AAGTTGAGACACTTATTTTTGGACA 57.361 32.000 0.00 0.00 35.10 4.02
2946 3429 9.665264 CTAAAGTTGAGACACTTATTTTTGGAC 57.335 33.333 0.00 0.00 35.87 4.02
2947 3430 9.403583 ACTAAAGTTGAGACACTTATTTTTGGA 57.596 29.630 0.00 0.00 35.87 3.53
2955 3438 9.880157 AACTTTGTACTAAAGTTGAGACACTTA 57.120 29.630 23.48 0.00 45.58 2.24
2956 3439 8.788325 AACTTTGTACTAAAGTTGAGACACTT 57.212 30.769 23.48 7.33 45.58 3.16
2973 3456 7.277098 GTGTCTCAACTTCAGTACAACTTTGTA 59.723 37.037 0.00 0.00 42.35 2.41
2974 3457 6.092259 GTGTCTCAACTTCAGTACAACTTTGT 59.908 38.462 0.00 0.00 44.86 2.83
2975 3458 6.313905 AGTGTCTCAACTTCAGTACAACTTTG 59.686 38.462 0.00 0.00 0.00 2.77
2976 3459 6.407202 AGTGTCTCAACTTCAGTACAACTTT 58.593 36.000 0.00 0.00 0.00 2.66
2977 3460 5.978814 AGTGTCTCAACTTCAGTACAACTT 58.021 37.500 0.00 0.00 0.00 2.66
2978 3461 5.599999 AGTGTCTCAACTTCAGTACAACT 57.400 39.130 0.00 0.00 0.00 3.16
2979 3462 7.948278 ATAAGTGTCTCAACTTCAGTACAAC 57.052 36.000 0.00 0.00 40.77 3.32
2980 3463 8.958119 AAATAAGTGTCTCAACTTCAGTACAA 57.042 30.769 0.00 0.00 40.77 2.41
2981 3464 8.826710 CAAAATAAGTGTCTCAACTTCAGTACA 58.173 33.333 0.00 0.00 40.77 2.90
2982 3465 8.283291 CCAAAATAAGTGTCTCAACTTCAGTAC 58.717 37.037 0.00 0.00 40.77 2.73
2983 3466 7.444183 CCCAAAATAAGTGTCTCAACTTCAGTA 59.556 37.037 0.00 0.00 40.77 2.74
2984 3467 6.263168 CCCAAAATAAGTGTCTCAACTTCAGT 59.737 38.462 0.00 0.00 40.77 3.41
2985 3468 6.486657 TCCCAAAATAAGTGTCTCAACTTCAG 59.513 38.462 0.00 0.00 40.77 3.02
2986 3469 6.262273 GTCCCAAAATAAGTGTCTCAACTTCA 59.738 38.462 0.00 0.00 40.77 3.02
2987 3470 6.565999 CGTCCCAAAATAAGTGTCTCAACTTC 60.566 42.308 0.00 0.00 40.77 3.01
2988 3471 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2989 3472 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2990 3473 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2991 3474 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2992 3475 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2993 3476 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2994 3477 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2995 3478 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2996 3479 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2997 3480 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2998 3481 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2999 3482 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3000 3483 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3001 3484 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3002 3485 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3003 3486 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3004 3487 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3005 3488 2.178325 TCATATACTCCCTCCGTCCCAA 59.822 50.000 0.00 0.00 0.00 4.12
3006 3489 1.784593 TCATATACTCCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
3007 3490 2.169330 GTCATATACTCCCTCCGTCCC 58.831 57.143 0.00 0.00 0.00 4.46
3008 3491 2.872732 TGTCATATACTCCCTCCGTCC 58.127 52.381 0.00 0.00 0.00 4.79
3009 3492 5.470047 AAATGTCATATACTCCCTCCGTC 57.530 43.478 0.00 0.00 0.00 4.79
3010 3493 5.454755 CCAAAATGTCATATACTCCCTCCGT 60.455 44.000 0.00 0.00 0.00 4.69
3011 3494 4.997395 CCAAAATGTCATATACTCCCTCCG 59.003 45.833 0.00 0.00 0.00 4.63
3012 3495 5.941788 ACCAAAATGTCATATACTCCCTCC 58.058 41.667 0.00 0.00 0.00 4.30
3013 3496 7.054124 TGAACCAAAATGTCATATACTCCCTC 58.946 38.462 0.00 0.00 0.00 4.30
3014 3497 6.969043 TGAACCAAAATGTCATATACTCCCT 58.031 36.000 0.00 0.00 0.00 4.20
3015 3498 6.828785 ACTGAACCAAAATGTCATATACTCCC 59.171 38.462 0.00 0.00 0.00 4.30
3016 3499 7.201732 CCACTGAACCAAAATGTCATATACTCC 60.202 40.741 0.00 0.00 0.00 3.85
3017 3500 7.679638 GCCACTGAACCAAAATGTCATATACTC 60.680 40.741 0.00 0.00 0.00 2.59
3018 3501 6.095440 GCCACTGAACCAAAATGTCATATACT 59.905 38.462 0.00 0.00 0.00 2.12
3019 3502 6.095440 AGCCACTGAACCAAAATGTCATATAC 59.905 38.462 0.00 0.00 0.00 1.47
3020 3503 6.186957 AGCCACTGAACCAAAATGTCATATA 58.813 36.000 0.00 0.00 0.00 0.86
3066 3549 8.046708 ACAATGCAAATACCTTACTATGTGAGA 58.953 33.333 0.00 0.00 0.00 3.27
3075 3558 9.289303 CAATTAGTCACAATGCAAATACCTTAC 57.711 33.333 0.00 0.00 0.00 2.34
3154 3638 5.182001 ACAAGTTAGAGTTGCATCATCCAAC 59.818 40.000 0.00 0.00 42.11 3.77
3217 3701 4.950479 GGCTGCAGCAGACTACAT 57.050 55.556 37.63 0.00 44.36 2.29
3233 3717 0.330604 AGCCCATATATGCCTGCAGG 59.669 55.000 29.34 29.34 38.53 4.85
3250 3734 8.774586 ACGTATAACATAATCCTGAATTCAAGC 58.225 33.333 9.88 0.00 0.00 4.01
3270 3754 7.328493 GCAGCACAGAATTCACATATACGTATA 59.672 37.037 17.24 17.24 0.00 1.47
3305 3789 3.358700 CGAAAACAACAGTTGATGCGATG 59.641 43.478 20.56 0.01 0.00 3.84
3306 3790 3.003275 ACGAAAACAACAGTTGATGCGAT 59.997 39.130 20.56 6.83 0.00 4.58
3308 3792 2.715268 ACGAAAACAACAGTTGATGCG 58.285 42.857 20.56 18.63 0.00 4.73
3309 3793 3.972502 GGTACGAAAACAACAGTTGATGC 59.027 43.478 20.56 6.08 0.00 3.91
3310 3794 4.533222 GGGTACGAAAACAACAGTTGATG 58.467 43.478 20.56 6.83 0.00 3.07
3311 3795 3.566742 GGGGTACGAAAACAACAGTTGAT 59.433 43.478 20.56 5.12 0.00 2.57
3312 3796 2.944349 GGGGTACGAAAACAACAGTTGA 59.056 45.455 20.56 0.00 0.00 3.18
3314 3798 2.946990 CAGGGGTACGAAAACAACAGTT 59.053 45.455 0.00 0.00 0.00 3.16
3315 3799 2.567985 CAGGGGTACGAAAACAACAGT 58.432 47.619 0.00 0.00 0.00 3.55
3316 3800 1.877443 CCAGGGGTACGAAAACAACAG 59.123 52.381 0.00 0.00 0.00 3.16
3317 3801 1.970092 CCAGGGGTACGAAAACAACA 58.030 50.000 0.00 0.00 0.00 3.33
3318 3802 0.594602 GCCAGGGGTACGAAAACAAC 59.405 55.000 0.00 0.00 0.00 3.32
3319 3803 0.475044 AGCCAGGGGTACGAAAACAA 59.525 50.000 0.00 0.00 0.00 2.83
3320 3804 1.350071 TAGCCAGGGGTACGAAAACA 58.650 50.000 0.00 0.00 0.00 2.83
3321 3805 2.289882 ACTTAGCCAGGGGTACGAAAAC 60.290 50.000 7.88 0.00 0.00 2.43
3322 3806 1.980036 ACTTAGCCAGGGGTACGAAAA 59.020 47.619 7.88 0.00 0.00 2.29
3323 3807 1.648116 ACTTAGCCAGGGGTACGAAA 58.352 50.000 7.88 0.00 0.00 3.46
3324 3808 2.530460 TACTTAGCCAGGGGTACGAA 57.470 50.000 7.88 0.00 0.00 3.85
3325 3809 2.761786 ATACTTAGCCAGGGGTACGA 57.238 50.000 7.88 0.00 0.00 3.43
3326 3810 5.479124 AAATATACTTAGCCAGGGGTACG 57.521 43.478 0.00 0.00 0.00 3.67
3327 3811 5.472478 GCAAAATATACTTAGCCAGGGGTAC 59.528 44.000 0.00 0.00 0.00 3.34
3328 3812 5.371472 AGCAAAATATACTTAGCCAGGGGTA 59.629 40.000 0.00 0.00 0.00 3.69
3329 3813 4.168088 AGCAAAATATACTTAGCCAGGGGT 59.832 41.667 0.00 0.00 0.00 4.95
3330 3814 4.520492 CAGCAAAATATACTTAGCCAGGGG 59.480 45.833 0.00 0.00 0.00 4.79
3388 4023 4.759183 AGGATTCAAGCAGAGAACTGAAAC 59.241 41.667 0.00 0.00 46.03 2.78
3389 4024 4.978099 AGGATTCAAGCAGAGAACTGAAA 58.022 39.130 0.00 0.00 46.03 2.69
3390 4025 4.630644 AGGATTCAAGCAGAGAACTGAA 57.369 40.909 0.00 0.00 46.03 3.02
3391 4026 4.630644 AAGGATTCAAGCAGAGAACTGA 57.369 40.909 0.00 0.00 46.03 3.41
3392 4027 4.082895 CCAAAGGATTCAAGCAGAGAACTG 60.083 45.833 0.00 0.00 45.91 3.16
3393 4028 4.077822 CCAAAGGATTCAAGCAGAGAACT 58.922 43.478 0.00 0.00 0.00 3.01
3394 4029 3.192212 CCCAAAGGATTCAAGCAGAGAAC 59.808 47.826 0.00 0.00 33.47 3.01
3395 4030 3.074390 TCCCAAAGGATTCAAGCAGAGAA 59.926 43.478 0.00 0.00 37.19 2.87
3396 4031 2.644299 TCCCAAAGGATTCAAGCAGAGA 59.356 45.455 0.00 0.00 37.19 3.10
3397 4032 3.077484 TCCCAAAGGATTCAAGCAGAG 57.923 47.619 0.00 0.00 37.19 3.35
3398 4033 3.524095 TTCCCAAAGGATTCAAGCAGA 57.476 42.857 0.00 0.00 43.54 4.26
3399 4034 4.020839 ACATTTCCCAAAGGATTCAAGCAG 60.021 41.667 0.00 0.00 43.54 4.24
3400 4035 3.903090 ACATTTCCCAAAGGATTCAAGCA 59.097 39.130 0.00 0.00 43.54 3.91
3401 4036 4.541973 ACATTTCCCAAAGGATTCAAGC 57.458 40.909 0.00 0.00 43.54 4.01
3403 4038 9.586732 CCTATATACATTTCCCAAAGGATTCAA 57.413 33.333 0.00 0.00 43.54 2.69
3404 4039 8.732854 ACCTATATACATTTCCCAAAGGATTCA 58.267 33.333 0.00 0.00 43.54 2.57
3405 4040 9.232473 GACCTATATACATTTCCCAAAGGATTC 57.768 37.037 0.00 0.00 43.54 2.52
3406 4041 8.732854 TGACCTATATACATTTCCCAAAGGATT 58.267 33.333 0.00 0.00 43.54 3.01
3407 4042 8.287904 TGACCTATATACATTTCCCAAAGGAT 57.712 34.615 0.00 0.00 43.54 3.24
3408 4043 7.570982 TCTGACCTATATACATTTCCCAAAGGA 59.429 37.037 0.00 0.00 41.88 3.36
3409 4044 7.745717 TCTGACCTATATACATTTCCCAAAGG 58.254 38.462 0.00 0.00 0.00 3.11
3410 4045 9.057089 GTTCTGACCTATATACATTTCCCAAAG 57.943 37.037 0.00 0.00 0.00 2.77
3411 4046 8.778059 AGTTCTGACCTATATACATTTCCCAAA 58.222 33.333 0.00 0.00 0.00 3.28
3412 4047 8.210946 CAGTTCTGACCTATATACATTTCCCAA 58.789 37.037 0.00 0.00 0.00 4.12
3413 4048 7.202093 CCAGTTCTGACCTATATACATTTCCCA 60.202 40.741 1.00 0.00 0.00 4.37
3414 4049 7.162082 CCAGTTCTGACCTATATACATTTCCC 58.838 42.308 1.00 0.00 0.00 3.97
3415 4050 7.736893 ACCAGTTCTGACCTATATACATTTCC 58.263 38.462 1.00 0.00 0.00 3.13
3416 4051 9.262358 GAACCAGTTCTGACCTATATACATTTC 57.738 37.037 3.25 0.00 36.69 2.17
3433 4068 3.388345 AAAGAGACCGAGAACCAGTTC 57.612 47.619 2.19 2.19 39.78 3.01
3434 4069 3.896272 AGTAAAGAGACCGAGAACCAGTT 59.104 43.478 0.00 0.00 0.00 3.16
3435 4070 3.256136 CAGTAAAGAGACCGAGAACCAGT 59.744 47.826 0.00 0.00 0.00 4.00
3436 4071 3.367498 CCAGTAAAGAGACCGAGAACCAG 60.367 52.174 0.00 0.00 0.00 4.00
3437 4072 2.561419 CCAGTAAAGAGACCGAGAACCA 59.439 50.000 0.00 0.00 0.00 3.67
3438 4073 2.561858 ACCAGTAAAGAGACCGAGAACC 59.438 50.000 0.00 0.00 0.00 3.62
3439 4074 3.938289 ACCAGTAAAGAGACCGAGAAC 57.062 47.619 0.00 0.00 0.00 3.01
3440 4075 7.707624 TTTATACCAGTAAAGAGACCGAGAA 57.292 36.000 0.00 0.00 0.00 2.87
3441 4076 7.395489 ACTTTTATACCAGTAAAGAGACCGAGA 59.605 37.037 0.00 0.00 34.01 4.04
3442 4077 7.545489 ACTTTTATACCAGTAAAGAGACCGAG 58.455 38.462 0.00 0.00 34.01 4.63
3443 4078 7.472334 ACTTTTATACCAGTAAAGAGACCGA 57.528 36.000 0.00 0.00 34.01 4.69
3444 4079 9.245962 CATACTTTTATACCAGTAAAGAGACCG 57.754 37.037 0.00 0.00 34.01 4.79
3445 4080 9.543783 CCATACTTTTATACCAGTAAAGAGACC 57.456 37.037 0.00 0.00 34.01 3.85
3450 4085 9.765795 CCTCTCCATACTTTTATACCAGTAAAG 57.234 37.037 0.00 0.00 35.53 1.85
3451 4086 9.275572 ACCTCTCCATACTTTTATACCAGTAAA 57.724 33.333 0.00 0.00 0.00 2.01
3452 4087 8.849543 ACCTCTCCATACTTTTATACCAGTAA 57.150 34.615 0.00 0.00 0.00 2.24
3453 4088 8.701895 CAACCTCTCCATACTTTTATACCAGTA 58.298 37.037 0.00 0.00 0.00 2.74
3454 4089 7.182206 ACAACCTCTCCATACTTTTATACCAGT 59.818 37.037 0.00 0.00 0.00 4.00
3455 4090 7.495934 CACAACCTCTCCATACTTTTATACCAG 59.504 40.741 0.00 0.00 0.00 4.00
3456 4091 7.181305 TCACAACCTCTCCATACTTTTATACCA 59.819 37.037 0.00 0.00 0.00 3.25
3457 4092 7.562135 TCACAACCTCTCCATACTTTTATACC 58.438 38.462 0.00 0.00 0.00 2.73
3460 4095 7.934120 GCTATCACAACCTCTCCATACTTTTAT 59.066 37.037 0.00 0.00 0.00 1.40
3461 4096 7.125811 AGCTATCACAACCTCTCCATACTTTTA 59.874 37.037 0.00 0.00 0.00 1.52
3462 4097 6.069963 AGCTATCACAACCTCTCCATACTTTT 60.070 38.462 0.00 0.00 0.00 2.27
3463 4098 5.426833 AGCTATCACAACCTCTCCATACTTT 59.573 40.000 0.00 0.00 0.00 2.66
3464 4099 4.965532 AGCTATCACAACCTCTCCATACTT 59.034 41.667 0.00 0.00 0.00 2.24
3465 4100 4.343526 CAGCTATCACAACCTCTCCATACT 59.656 45.833 0.00 0.00 0.00 2.12
3466 4101 4.502259 CCAGCTATCACAACCTCTCCATAC 60.502 50.000 0.00 0.00 0.00 2.39
3467 4102 3.643320 CCAGCTATCACAACCTCTCCATA 59.357 47.826 0.00 0.00 0.00 2.74
3468 4103 2.437281 CCAGCTATCACAACCTCTCCAT 59.563 50.000 0.00 0.00 0.00 3.41
3469 4104 1.833630 CCAGCTATCACAACCTCTCCA 59.166 52.381 0.00 0.00 0.00 3.86
3470 4105 1.139853 CCCAGCTATCACAACCTCTCC 59.860 57.143 0.00 0.00 0.00 3.71
3471 4106 2.111384 TCCCAGCTATCACAACCTCTC 58.889 52.381 0.00 0.00 0.00 3.20
3472 4107 2.254152 TCCCAGCTATCACAACCTCT 57.746 50.000 0.00 0.00 0.00 3.69
3473 4108 2.224402 GGATCCCAGCTATCACAACCTC 60.224 54.545 0.00 0.00 0.00 3.85
3474 4109 1.771255 GGATCCCAGCTATCACAACCT 59.229 52.381 0.00 0.00 0.00 3.50
3475 4110 1.541233 CGGATCCCAGCTATCACAACC 60.541 57.143 6.06 0.00 0.00 3.77
3476 4111 1.139058 ACGGATCCCAGCTATCACAAC 59.861 52.381 6.06 0.00 0.00 3.32
3477 4112 1.138859 CACGGATCCCAGCTATCACAA 59.861 52.381 6.06 0.00 0.00 3.33
3478 4113 0.752658 CACGGATCCCAGCTATCACA 59.247 55.000 6.06 0.00 0.00 3.58
3479 4114 1.000283 CTCACGGATCCCAGCTATCAC 60.000 57.143 6.06 0.00 0.00 3.06
3480 4115 1.332195 CTCACGGATCCCAGCTATCA 58.668 55.000 6.06 0.00 0.00 2.15
3481 4116 0.605589 CCTCACGGATCCCAGCTATC 59.394 60.000 6.06 0.00 0.00 2.08
3482 4117 0.833834 CCCTCACGGATCCCAGCTAT 60.834 60.000 6.06 0.00 0.00 2.97
3483 4118 1.457643 CCCTCACGGATCCCAGCTA 60.458 63.158 6.06 0.00 0.00 3.32
3484 4119 2.765807 CCCTCACGGATCCCAGCT 60.766 66.667 6.06 0.00 0.00 4.24
3485 4120 3.866582 CCCCTCACGGATCCCAGC 61.867 72.222 6.06 0.00 0.00 4.85
3486 4121 3.866582 GCCCCTCACGGATCCCAG 61.867 72.222 6.06 0.00 0.00 4.45
3490 4125 4.593864 GAGCGCCCCTCACGGATC 62.594 72.222 2.29 0.00 40.45 3.36
3494 4129 3.883744 AAACAGAGCGCCCCTCACG 62.884 63.158 2.29 0.00 43.31 4.35
3495 4130 1.578206 GAAAACAGAGCGCCCCTCAC 61.578 60.000 2.29 0.00 43.31 3.51
3496 4131 1.302511 GAAAACAGAGCGCCCCTCA 60.303 57.895 2.29 0.00 43.31 3.86
3497 4132 2.391389 CGAAAACAGAGCGCCCCTC 61.391 63.158 2.29 0.00 41.07 4.30
3498 4133 1.823169 TACGAAAACAGAGCGCCCCT 61.823 55.000 2.29 0.00 0.00 4.79
3499 4134 0.743345 ATACGAAAACAGAGCGCCCC 60.743 55.000 2.29 0.00 0.00 5.80
3500 4135 1.930567 TATACGAAAACAGAGCGCCC 58.069 50.000 2.29 0.00 0.00 6.13
3501 4136 4.626321 GTATATACGAAAACAGAGCGCC 57.374 45.455 2.29 0.00 0.00 6.53
3518 4153 9.860898 CATGATCTATTTCATGTTCTCCGTATA 57.139 33.333 6.32 0.00 45.15 1.47
3519 4154 8.768957 CATGATCTATTTCATGTTCTCCGTAT 57.231 34.615 6.32 0.00 45.15 3.06
3536 4171 8.514594 GGATGAACAAGTCAAAAACATGATCTA 58.485 33.333 0.00 0.00 40.50 1.98
3537 4172 7.232127 AGGATGAACAAGTCAAAAACATGATCT 59.768 33.333 0.00 0.00 40.50 2.75
3538 4173 7.327761 CAGGATGAACAAGTCAAAAACATGATC 59.672 37.037 0.00 0.00 40.50 2.92
3539 4174 7.149973 CAGGATGAACAAGTCAAAAACATGAT 58.850 34.615 0.00 0.00 40.50 2.45
3540 4175 6.096705 ACAGGATGAACAAGTCAAAAACATGA 59.903 34.615 0.00 0.00 40.50 3.07
3541 4176 6.199531 CACAGGATGAACAAGTCAAAAACATG 59.800 38.462 0.00 0.00 40.50 3.21
3542 4177 6.275335 CACAGGATGAACAAGTCAAAAACAT 58.725 36.000 0.00 0.00 40.50 2.71
3543 4178 5.649557 CACAGGATGAACAAGTCAAAAACA 58.350 37.500 0.00 0.00 40.50 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.