Multiple sequence alignment - TraesCS6D01G401000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G401000 chr6D 100.000 2873 0 0 1 2873 470542427 470545299 0.000000e+00 5306.0
1 TraesCS6D01G401000 chr6D 85.920 902 70 13 858 1751 456949802 456950654 0.000000e+00 909.0
2 TraesCS6D01G401000 chr6A 86.876 1684 103 49 877 2525 615271757 615273357 0.000000e+00 1777.0
3 TraesCS6D01G401000 chr6A 94.492 926 41 7 998 1921 615309099 615310016 0.000000e+00 1419.0
4 TraesCS6D01G401000 chr6A 83.424 549 20 28 2003 2525 615310227 615310730 7.300000e-121 444.0
5 TraesCS6D01G401000 chr6A 97.674 43 1 0 796 838 615308968 615309010 1.100000e-09 75.0
6 TraesCS6D01G401000 chr6B 93.096 898 36 9 964 1859 720612848 720611975 0.000000e+00 1291.0
7 TraesCS6D01G401000 chr6B 92.349 562 18 3 1 562 720631710 720631174 0.000000e+00 776.0
8 TraesCS6D01G401000 chr6B 97.594 374 7 2 560 933 720613218 720612847 8.680000e-180 640.0
9 TraesCS6D01G401000 chr6B 77.027 222 43 5 81 302 23035624 23035837 1.400000e-23 121.0
10 TraesCS6D01G401000 chr5A 87.222 900 69 11 858 1751 602794964 602794105 0.000000e+00 983.0
11 TraesCS6D01G401000 chr5A 86.115 749 57 11 1014 1751 602818795 602818083 0.000000e+00 763.0
12 TraesCS6D01G401000 chr5A 76.549 226 45 7 81 304 650492274 650492493 1.810000e-22 117.0
13 TraesCS6D01G401000 chr7A 85.742 519 43 14 2084 2596 155260048 155259555 1.180000e-143 520.0
14 TraesCS6D01G401000 chr4A 88.785 107 9 1 2763 2869 614112478 614112375 8.360000e-26 128.0
15 TraesCS6D01G401000 chr3D 87.736 106 10 3 2764 2869 414912280 414912382 1.400000e-23 121.0
16 TraesCS6D01G401000 chr3D 85.294 102 8 7 1914 2014 593652478 593652573 6.550000e-17 99.0
17 TraesCS6D01G401000 chr7B 87.037 108 10 2 2764 2871 16160325 16160222 5.030000e-23 119.0
18 TraesCS6D01G401000 chr7B 86.916 107 11 1 2763 2869 629501521 629501418 1.810000e-22 117.0
19 TraesCS6D01G401000 chr7B 77.251 211 38 8 96 304 614735036 614735238 6.510000e-22 115.0
20 TraesCS6D01G401000 chrUn 85.217 115 13 3 2757 2871 437043011 437043121 6.510000e-22 115.0
21 TraesCS6D01G401000 chrUn 86.139 101 7 7 1915 2014 41928873 41928779 5.060000e-18 102.0
22 TraesCS6D01G401000 chr3B 85.217 115 13 3 2757 2871 26067184 26067074 6.510000e-22 115.0
23 TraesCS6D01G401000 chr3B 85.217 115 13 3 2757 2871 26256484 26256374 6.510000e-22 115.0
24 TraesCS6D01G401000 chr3B 84.348 115 9 8 193 304 95154038 95153930 1.410000e-18 104.0
25 TraesCS6D01G401000 chr3B 100.000 30 0 0 654 683 255030159 255030130 4.000000e-04 56.5
26 TraesCS6D01G401000 chr1B 86.239 109 12 1 2763 2871 558228405 558228300 6.510000e-22 115.0
27 TraesCS6D01G401000 chr1B 83.186 113 17 2 193 304 112401384 112401273 5.060000e-18 102.0
28 TraesCS6D01G401000 chr2D 85.088 114 14 3 2758 2871 521584386 521584496 2.340000e-21 113.0
29 TraesCS6D01G401000 chr2B 84.211 114 12 4 196 304 38212177 38212289 3.920000e-19 106.0
30 TraesCS6D01G401000 chr2B 82.609 115 15 5 193 304 670445602 670445714 2.360000e-16 97.1
31 TraesCS6D01G401000 chr7D 81.148 122 21 2 184 304 1923767 1923887 2.360000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G401000 chr6D 470542427 470545299 2872 False 5306.0 5306 100.000000 1 2873 1 chr6D.!!$F2 2872
1 TraesCS6D01G401000 chr6D 456949802 456950654 852 False 909.0 909 85.920000 858 1751 1 chr6D.!!$F1 893
2 TraesCS6D01G401000 chr6A 615271757 615273357 1600 False 1777.0 1777 86.876000 877 2525 1 chr6A.!!$F1 1648
3 TraesCS6D01G401000 chr6A 615308968 615310730 1762 False 646.0 1419 91.863333 796 2525 3 chr6A.!!$F2 1729
4 TraesCS6D01G401000 chr6B 720611975 720613218 1243 True 965.5 1291 95.345000 560 1859 2 chr6B.!!$R2 1299
5 TraesCS6D01G401000 chr6B 720631174 720631710 536 True 776.0 776 92.349000 1 562 1 chr6B.!!$R1 561
6 TraesCS6D01G401000 chr5A 602794105 602794964 859 True 983.0 983 87.222000 858 1751 1 chr5A.!!$R1 893
7 TraesCS6D01G401000 chr5A 602818083 602818795 712 True 763.0 763 86.115000 1014 1751 1 chr5A.!!$R2 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 536 0.031515 TCCTCGTATCCACCCCACAT 60.032 55.0 0.0 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 2333 0.043485 GAAGAGGGGGAGGAGGAGTT 59.957 60.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 4.112634 AGCTGTGGTTCCTTTTTCCATA 57.887 40.909 0.00 0.00 33.68 2.74
147 148 6.073112 CCTTTTTCCATATTTTGGTGTGCTTG 60.073 38.462 0.00 0.00 46.52 4.01
148 149 5.543507 TTTCCATATTTTGGTGTGCTTGT 57.456 34.783 0.00 0.00 46.52 3.16
149 150 6.656632 TTTCCATATTTTGGTGTGCTTGTA 57.343 33.333 0.00 0.00 46.52 2.41
150 151 6.656632 TTCCATATTTTGGTGTGCTTGTAA 57.343 33.333 0.00 0.00 46.52 2.41
151 152 6.849085 TCCATATTTTGGTGTGCTTGTAAT 57.151 33.333 0.00 0.00 46.52 1.89
152 153 6.629128 TCCATATTTTGGTGTGCTTGTAATG 58.371 36.000 0.00 0.00 46.52 1.90
153 154 5.291614 CCATATTTTGGTGTGCTTGTAATGC 59.708 40.000 0.00 0.00 40.99 3.56
185 186 4.515191 GTGAGCTGGTGATTCAACACTTTA 59.485 41.667 0.00 0.00 40.22 1.85
266 267 4.565022 CCGGTTGATGGCTTTGTTAATTT 58.435 39.130 0.00 0.00 0.00 1.82
294 295 2.371910 GCTCTACTCAAGCCTTCGTT 57.628 50.000 0.00 0.00 33.53 3.85
332 333 8.201464 TGATTCGTTCTATTATAGCCAGTGAAA 58.799 33.333 0.00 0.00 0.00 2.69
463 464 8.298854 CCGCATGGAGAAATTTCATAATGATAA 58.701 33.333 19.99 0.00 37.49 1.75
484 485 8.355169 TGATAAATATGCTTCAAGAGATTTGGC 58.645 33.333 0.00 0.00 0.00 4.52
485 486 4.825546 ATATGCTTCAAGAGATTTGGCG 57.174 40.909 0.00 0.00 0.00 5.69
486 487 0.523072 TGCTTCAAGAGATTTGGCGC 59.477 50.000 0.00 0.00 0.00 6.53
487 488 0.523072 GCTTCAAGAGATTTGGCGCA 59.477 50.000 10.83 0.00 0.00 6.09
488 489 1.467035 GCTTCAAGAGATTTGGCGCAG 60.467 52.381 10.83 0.00 0.00 5.18
489 490 1.808945 CTTCAAGAGATTTGGCGCAGT 59.191 47.619 10.83 0.00 0.00 4.40
490 491 1.442769 TCAAGAGATTTGGCGCAGTC 58.557 50.000 10.83 0.58 0.00 3.51
491 492 0.449388 CAAGAGATTTGGCGCAGTCC 59.551 55.000 10.83 0.00 0.00 3.85
492 493 1.021390 AAGAGATTTGGCGCAGTCCG 61.021 55.000 10.83 0.00 40.75 4.79
493 494 2.436646 AGATTTGGCGCAGTCCGG 60.437 61.111 10.83 0.00 37.44 5.14
494 495 2.746277 GATTTGGCGCAGTCCGGT 60.746 61.111 10.83 0.00 37.44 5.28
495 496 2.282180 ATTTGGCGCAGTCCGGTT 60.282 55.556 10.83 0.00 37.44 4.44
496 497 1.003112 ATTTGGCGCAGTCCGGTTA 60.003 52.632 10.83 0.00 37.44 2.85
497 498 0.393808 ATTTGGCGCAGTCCGGTTAT 60.394 50.000 10.83 0.00 37.44 1.89
498 499 1.022451 TTTGGCGCAGTCCGGTTATC 61.022 55.000 10.83 0.00 37.44 1.75
499 500 2.173758 TTGGCGCAGTCCGGTTATCA 62.174 55.000 10.83 0.00 37.44 2.15
500 501 2.171725 GGCGCAGTCCGGTTATCAC 61.172 63.158 10.83 0.00 37.44 3.06
501 502 1.153628 GCGCAGTCCGGTTATCACT 60.154 57.895 0.30 0.00 37.44 3.41
502 503 0.101759 GCGCAGTCCGGTTATCACTA 59.898 55.000 0.30 0.00 37.44 2.74
503 504 1.836383 CGCAGTCCGGTTATCACTAC 58.164 55.000 0.00 0.00 0.00 2.73
504 505 1.836383 GCAGTCCGGTTATCACTACG 58.164 55.000 0.00 0.00 0.00 3.51
505 506 1.133790 GCAGTCCGGTTATCACTACGT 59.866 52.381 0.00 0.00 0.00 3.57
506 507 2.793933 CAGTCCGGTTATCACTACGTG 58.206 52.381 0.00 0.00 34.45 4.49
507 508 2.421073 CAGTCCGGTTATCACTACGTGA 59.579 50.000 0.00 0.00 46.90 4.35
508 509 2.421424 AGTCCGGTTATCACTACGTGAC 59.579 50.000 0.00 0.00 45.65 3.67
509 510 2.162208 GTCCGGTTATCACTACGTGACA 59.838 50.000 0.00 0.00 45.65 3.58
510 511 2.421073 TCCGGTTATCACTACGTGACAG 59.579 50.000 0.00 0.00 45.65 3.51
511 512 2.421073 CCGGTTATCACTACGTGACAGA 59.579 50.000 0.00 0.00 45.65 3.41
512 513 3.423571 CGGTTATCACTACGTGACAGAC 58.576 50.000 0.00 0.00 45.65 3.51
520 521 2.502080 CGTGACAGACGCGTCCTC 60.502 66.667 34.08 27.17 45.77 3.71
521 522 2.502080 GTGACAGACGCGTCCTCG 60.502 66.667 34.08 24.54 34.88 4.63
522 523 2.976350 TGACAGACGCGTCCTCGT 60.976 61.111 34.08 27.44 46.38 4.18
523 524 1.668793 TGACAGACGCGTCCTCGTA 60.669 57.895 34.08 15.33 43.42 3.43
524 525 1.022982 TGACAGACGCGTCCTCGTAT 61.023 55.000 34.08 13.29 43.42 3.06
525 526 0.316032 GACAGACGCGTCCTCGTATC 60.316 60.000 34.08 18.50 43.42 2.24
526 527 1.009900 CAGACGCGTCCTCGTATCC 60.010 63.158 34.08 8.23 43.42 2.59
527 528 1.450848 AGACGCGTCCTCGTATCCA 60.451 57.895 34.08 0.00 43.42 3.41
528 529 1.298190 GACGCGTCCTCGTATCCAC 60.298 63.158 28.61 0.00 43.42 4.02
529 530 2.025727 CGCGTCCTCGTATCCACC 59.974 66.667 0.00 0.00 39.49 4.61
530 531 2.416260 GCGTCCTCGTATCCACCC 59.584 66.667 0.00 0.00 39.49 4.61
531 532 3.126528 CGTCCTCGTATCCACCCC 58.873 66.667 0.00 0.00 0.00 4.95
532 533 1.755395 CGTCCTCGTATCCACCCCA 60.755 63.158 0.00 0.00 0.00 4.96
533 534 1.821258 GTCCTCGTATCCACCCCAC 59.179 63.158 0.00 0.00 0.00 4.61
534 535 0.974010 GTCCTCGTATCCACCCCACA 60.974 60.000 0.00 0.00 0.00 4.17
535 536 0.031515 TCCTCGTATCCACCCCACAT 60.032 55.000 0.00 0.00 0.00 3.21
536 537 1.218450 TCCTCGTATCCACCCCACATA 59.782 52.381 0.00 0.00 0.00 2.29
537 538 2.158219 TCCTCGTATCCACCCCACATAT 60.158 50.000 0.00 0.00 0.00 1.78
538 539 3.076333 TCCTCGTATCCACCCCACATATA 59.924 47.826 0.00 0.00 0.00 0.86
539 540 3.835978 CCTCGTATCCACCCCACATATAA 59.164 47.826 0.00 0.00 0.00 0.98
540 541 4.081642 CCTCGTATCCACCCCACATATAAG 60.082 50.000 0.00 0.00 0.00 1.73
541 542 3.259876 TCGTATCCACCCCACATATAAGC 59.740 47.826 0.00 0.00 0.00 3.09
542 543 3.260884 CGTATCCACCCCACATATAAGCT 59.739 47.826 0.00 0.00 0.00 3.74
543 544 3.795688 ATCCACCCCACATATAAGCTG 57.204 47.619 0.00 0.00 0.00 4.24
544 545 1.774254 TCCACCCCACATATAAGCTGG 59.226 52.381 0.00 0.00 0.00 4.85
545 546 1.202927 CCACCCCACATATAAGCTGGG 60.203 57.143 0.04 0.04 44.03 4.45
546 547 1.907240 ACCCCACATATAAGCTGGGT 58.093 50.000 1.35 1.35 43.01 4.51
547 548 2.708861 CACCCCACATATAAGCTGGGTA 59.291 50.000 6.81 0.00 44.32 3.69
548 549 3.330701 CACCCCACATATAAGCTGGGTAT 59.669 47.826 6.81 0.00 44.32 2.73
549 550 3.987501 ACCCCACATATAAGCTGGGTATT 59.012 43.478 5.37 0.00 44.30 1.89
550 551 5.013704 CACCCCACATATAAGCTGGGTATTA 59.986 44.000 6.81 0.00 44.32 0.98
551 552 5.250774 ACCCCACATATAAGCTGGGTATTAG 59.749 44.000 5.37 0.00 44.30 1.73
552 553 5.339200 CCCCACATATAAGCTGGGTATTAGG 60.339 48.000 11.94 0.88 43.01 2.69
553 554 5.186198 CCACATATAAGCTGGGTATTAGGC 58.814 45.833 0.00 0.00 0.00 3.93
554 555 4.870426 CACATATAAGCTGGGTATTAGGCG 59.130 45.833 0.00 0.00 0.00 5.52
555 556 4.530946 ACATATAAGCTGGGTATTAGGCGT 59.469 41.667 0.00 0.00 0.00 5.68
556 557 3.679824 ATAAGCTGGGTATTAGGCGTC 57.320 47.619 0.00 0.00 0.00 5.19
557 558 0.104304 AAGCTGGGTATTAGGCGTCG 59.896 55.000 0.00 0.00 0.00 5.12
558 559 1.954651 GCTGGGTATTAGGCGTCGC 60.955 63.158 9.22 9.22 0.00 5.19
598 599 0.115745 TATAGGGCCGGTTAGAGGGG 59.884 60.000 1.90 0.00 0.00 4.79
632 633 0.036671 AAAAGGTGATCGGGTCGTCC 60.037 55.000 0.00 0.00 0.00 4.79
644 645 2.126228 TCGTCCCATCGAACGTGC 60.126 61.111 7.20 0.00 39.78 5.34
737 738 1.597663 GTGTCCTAATATGTGTGCGGC 59.402 52.381 0.00 0.00 0.00 6.53
850 851 5.584251 AGATTGCCGTGTTTTGTTCAAAAAT 59.416 32.000 11.47 1.72 0.00 1.82
853 854 6.721571 TGCCGTGTTTTGTTCAAAAATAAA 57.278 29.167 11.47 0.00 0.00 1.40
854 855 7.308782 TGCCGTGTTTTGTTCAAAAATAAAT 57.691 28.000 11.47 0.00 0.00 1.40
855 856 8.420374 TGCCGTGTTTTGTTCAAAAATAAATA 57.580 26.923 11.47 0.00 0.00 1.40
933 941 5.997384 TGAAGGAAAAGTAGGAGTAGGAC 57.003 43.478 0.00 0.00 0.00 3.85
1018 1028 8.304596 GTATATATATATATGTGCCGTGGCAGT 58.695 37.037 20.93 8.83 39.43 4.40
1117 1148 2.265904 CCGATCCGTGGGCGAGATA 61.266 63.158 0.00 0.00 41.33 1.98
1205 1239 2.182030 GCGAGGACGAGGAGTTGG 59.818 66.667 0.00 0.00 42.66 3.77
1218 1252 1.935327 GAGTTGGACGAGGAGGACCG 61.935 65.000 0.00 0.00 41.83 4.79
1429 1463 3.565764 ATCGTGGACATGGACATCAAT 57.434 42.857 0.00 0.00 0.00 2.57
1539 1573 0.300193 GACGACGACGAGTACCTAGC 59.700 60.000 15.32 0.00 42.66 3.42
1555 1589 1.480954 CTAGCCGAGGCCAAGAAGTTA 59.519 52.381 10.95 0.00 43.17 2.24
1561 1595 1.732809 GAGGCCAAGAAGTTAAGCGAC 59.267 52.381 5.01 0.00 0.00 5.19
1579 1613 2.100989 GACATACGGTGGGAGAGACTT 58.899 52.381 0.00 0.00 0.00 3.01
1659 1711 4.009002 GACAACGAGGAGGACTACTACTT 58.991 47.826 0.00 0.00 41.79 2.24
1660 1712 3.757493 ACAACGAGGAGGACTACTACTTG 59.243 47.826 0.00 0.00 41.79 3.16
1661 1713 3.002038 ACGAGGAGGACTACTACTTGG 57.998 52.381 0.00 0.00 44.82 3.61
1662 1714 2.575279 ACGAGGAGGACTACTACTTGGA 59.425 50.000 0.00 0.00 44.82 3.53
1663 1715 2.944349 CGAGGAGGACTACTACTTGGAC 59.056 54.545 0.00 0.00 41.79 4.02
1664 1716 2.944349 GAGGAGGACTACTACTTGGACG 59.056 54.545 0.00 0.00 41.79 4.79
1665 1717 2.575279 AGGAGGACTACTACTTGGACGA 59.425 50.000 0.00 0.00 36.86 4.20
1666 1718 2.944349 GGAGGACTACTACTTGGACGAG 59.056 54.545 0.00 0.00 0.00 4.18
1667 1719 2.944349 GAGGACTACTACTTGGACGAGG 59.056 54.545 0.00 0.00 0.00 4.63
1668 1720 2.575279 AGGACTACTACTTGGACGAGGA 59.425 50.000 0.00 0.00 0.00 3.71
1669 1721 2.944349 GGACTACTACTTGGACGAGGAG 59.056 54.545 0.00 0.00 33.59 3.69
1670 1722 2.944349 GACTACTACTTGGACGAGGAGG 59.056 54.545 3.90 0.00 31.49 4.30
1671 1723 2.575279 ACTACTACTTGGACGAGGAGGA 59.425 50.000 3.90 0.00 31.49 3.71
1672 1724 1.836802 ACTACTTGGACGAGGAGGAC 58.163 55.000 3.90 0.00 31.49 3.85
1673 1725 1.355043 ACTACTTGGACGAGGAGGACT 59.645 52.381 3.90 0.00 31.49 3.85
1674 1726 2.575279 ACTACTTGGACGAGGAGGACTA 59.425 50.000 3.90 0.00 31.49 2.59
1675 1727 1.836802 ACTTGGACGAGGAGGACTAC 58.163 55.000 0.00 0.00 0.00 2.73
1676 1728 1.355043 ACTTGGACGAGGAGGACTACT 59.645 52.381 0.00 0.00 0.00 2.57
1945 2007 0.486879 TTTCCCCCATGGCAAAGACT 59.513 50.000 6.09 0.00 0.00 3.24
1946 2008 0.486879 TTCCCCCATGGCAAAGACTT 59.513 50.000 6.09 0.00 0.00 3.01
1947 2009 0.039618 TCCCCCATGGCAAAGACTTC 59.960 55.000 6.09 0.00 0.00 3.01
1948 2010 0.972471 CCCCCATGGCAAAGACTTCC 60.972 60.000 6.09 0.00 0.00 3.46
1949 2011 0.251742 CCCCATGGCAAAGACTTCCA 60.252 55.000 6.09 0.00 0.00 3.53
1950 2012 1.620524 CCCCATGGCAAAGACTTCCAT 60.621 52.381 6.09 3.15 40.98 3.41
1951 2013 2.181975 CCCATGGCAAAGACTTCCATT 58.818 47.619 6.09 0.00 38.46 3.16
1952 2014 2.568509 CCCATGGCAAAGACTTCCATTT 59.431 45.455 6.09 0.00 38.46 2.32
1953 2015 3.768757 CCCATGGCAAAGACTTCCATTTA 59.231 43.478 6.09 0.00 38.46 1.40
1954 2016 4.222588 CCCATGGCAAAGACTTCCATTTAA 59.777 41.667 6.09 0.00 38.46 1.52
1955 2017 5.104817 CCCATGGCAAAGACTTCCATTTAAT 60.105 40.000 6.09 0.00 38.46 1.40
1956 2018 6.408869 CCATGGCAAAGACTTCCATTTAATT 58.591 36.000 0.00 0.00 38.46 1.40
1957 2019 6.880529 CCATGGCAAAGACTTCCATTTAATTT 59.119 34.615 0.00 0.00 38.46 1.82
1958 2020 7.148373 CCATGGCAAAGACTTCCATTTAATTTG 60.148 37.037 0.00 0.00 38.46 2.32
1959 2021 7.060383 TGGCAAAGACTTCCATTTAATTTGA 57.940 32.000 0.00 0.00 0.00 2.69
2029 2218 2.819019 TGTATTGGTGGCTCATGTTGTG 59.181 45.455 0.00 0.00 0.00 3.33
2063 2252 3.191162 TCTGTTTCCTTTTGATCGCCATG 59.809 43.478 0.00 0.00 0.00 3.66
2119 2308 4.856801 CGCCGCTGCCCTACCATT 62.857 66.667 0.00 0.00 0.00 3.16
2120 2309 2.508928 GCCGCTGCCCTACCATTA 59.491 61.111 0.00 0.00 0.00 1.90
2121 2310 1.153046 GCCGCTGCCCTACCATTAA 60.153 57.895 0.00 0.00 0.00 1.40
2122 2311 0.750182 GCCGCTGCCCTACCATTAAA 60.750 55.000 0.00 0.00 0.00 1.52
2123 2312 1.308998 CCGCTGCCCTACCATTAAAG 58.691 55.000 0.00 0.00 0.00 1.85
2124 2313 1.134220 CCGCTGCCCTACCATTAAAGA 60.134 52.381 0.00 0.00 0.00 2.52
2125 2314 2.487265 CCGCTGCCCTACCATTAAAGAT 60.487 50.000 0.00 0.00 0.00 2.40
2126 2315 3.244422 CCGCTGCCCTACCATTAAAGATA 60.244 47.826 0.00 0.00 0.00 1.98
2127 2316 4.565652 CCGCTGCCCTACCATTAAAGATAT 60.566 45.833 0.00 0.00 0.00 1.63
2128 2317 5.338056 CCGCTGCCCTACCATTAAAGATATA 60.338 44.000 0.00 0.00 0.00 0.86
2129 2318 6.170506 CGCTGCCCTACCATTAAAGATATAA 58.829 40.000 0.00 0.00 0.00 0.98
2130 2319 6.653320 CGCTGCCCTACCATTAAAGATATAAA 59.347 38.462 0.00 0.00 0.00 1.40
2131 2320 7.360946 CGCTGCCCTACCATTAAAGATATAAAC 60.361 40.741 0.00 0.00 0.00 2.01
2132 2321 7.665974 GCTGCCCTACCATTAAAGATATAAACT 59.334 37.037 0.00 0.00 0.00 2.66
2133 2322 9.574516 CTGCCCTACCATTAAAGATATAAACTT 57.425 33.333 0.00 0.00 0.00 2.66
2134 2323 9.569122 TGCCCTACCATTAAAGATATAAACTTC 57.431 33.333 0.00 0.00 0.00 3.01
2135 2324 9.794719 GCCCTACCATTAAAGATATAAACTTCT 57.205 33.333 0.00 0.00 0.00 2.85
2140 2329 9.343539 ACCATTAAAGATATAAACTTCTCTGCC 57.656 33.333 0.00 0.00 0.00 4.85
2141 2330 9.566432 CCATTAAAGATATAAACTTCTCTGCCT 57.434 33.333 0.00 0.00 0.00 4.75
2143 2332 9.785982 ATTAAAGATATAAACTTCTCTGCCTCC 57.214 33.333 0.00 0.00 0.00 4.30
2144 2333 6.814954 AAGATATAAACTTCTCTGCCTCCA 57.185 37.500 0.00 0.00 0.00 3.86
2145 2334 6.814954 AGATATAAACTTCTCTGCCTCCAA 57.185 37.500 0.00 0.00 0.00 3.53
2146 2335 6.587273 AGATATAAACTTCTCTGCCTCCAAC 58.413 40.000 0.00 0.00 0.00 3.77
2147 2336 4.917906 ATAAACTTCTCTGCCTCCAACT 57.082 40.909 0.00 0.00 0.00 3.16
2148 2337 2.849294 AACTTCTCTGCCTCCAACTC 57.151 50.000 0.00 0.00 0.00 3.01
2149 2338 0.980423 ACTTCTCTGCCTCCAACTCC 59.020 55.000 0.00 0.00 0.00 3.85
2150 2339 1.274712 CTTCTCTGCCTCCAACTCCT 58.725 55.000 0.00 0.00 0.00 3.69
2151 2340 1.206849 CTTCTCTGCCTCCAACTCCTC 59.793 57.143 0.00 0.00 0.00 3.71
2152 2341 0.616111 TCTCTGCCTCCAACTCCTCC 60.616 60.000 0.00 0.00 0.00 4.30
2153 2342 0.617249 CTCTGCCTCCAACTCCTCCT 60.617 60.000 0.00 0.00 0.00 3.69
2154 2343 0.616111 TCTGCCTCCAACTCCTCCTC 60.616 60.000 0.00 0.00 0.00 3.71
2155 2344 1.613630 TGCCTCCAACTCCTCCTCC 60.614 63.158 0.00 0.00 0.00 4.30
2156 2345 2.371259 GCCTCCAACTCCTCCTCCC 61.371 68.421 0.00 0.00 0.00 4.30
2157 2346 1.690985 CCTCCAACTCCTCCTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
2247 2454 0.690192 TCACCACCACCATCATCGTT 59.310 50.000 0.00 0.00 0.00 3.85
2250 2457 1.086696 CCACCACCATCATCGTTGTC 58.913 55.000 0.00 0.00 0.00 3.18
2257 2464 1.059122 CCATCATCGTTGTCGTTGTCG 59.941 52.381 0.00 0.00 37.80 4.35
2283 2490 4.260948 GCCATCATCATTTTCTTCCGAGTC 60.261 45.833 0.00 0.00 0.00 3.36
2284 2491 4.025396 CCATCATCATTTTCTTCCGAGTCG 60.025 45.833 5.29 5.29 0.00 4.18
2323 2555 5.887598 TGCAAGCATGAGTATATTTCCAAGT 59.112 36.000 0.00 0.00 0.00 3.16
2347 2579 1.981495 AGTTGGAGCCAGCTAGTTTCT 59.019 47.619 3.90 0.00 35.76 2.52
2348 2580 2.373502 AGTTGGAGCCAGCTAGTTTCTT 59.626 45.455 3.90 0.00 35.76 2.52
2384 2616 1.589716 GCACGCCTGAGATTTGCCTT 61.590 55.000 0.00 0.00 0.00 4.35
2395 2627 4.094887 TGAGATTTGCCTTATGTCTTTCGC 59.905 41.667 0.00 0.00 0.00 4.70
2396 2628 3.378427 AGATTTGCCTTATGTCTTTCGCC 59.622 43.478 0.00 0.00 0.00 5.54
2397 2629 2.489938 TTGCCTTATGTCTTTCGCCT 57.510 45.000 0.00 0.00 0.00 5.52
2398 2630 2.489938 TGCCTTATGTCTTTCGCCTT 57.510 45.000 0.00 0.00 0.00 4.35
2399 2631 2.083774 TGCCTTATGTCTTTCGCCTTG 58.916 47.619 0.00 0.00 0.00 3.61
2400 2632 2.084546 GCCTTATGTCTTTCGCCTTGT 58.915 47.619 0.00 0.00 0.00 3.16
2401 2633 3.267483 GCCTTATGTCTTTCGCCTTGTA 58.733 45.455 0.00 0.00 0.00 2.41
2402 2634 3.877508 GCCTTATGTCTTTCGCCTTGTAT 59.122 43.478 0.00 0.00 0.00 2.29
2406 2638 3.247006 TGTCTTTCGCCTTGTATCCTC 57.753 47.619 0.00 0.00 0.00 3.71
2424 2656 2.542618 CCTCATCCACTCGTTGATCTCG 60.543 54.545 0.00 0.00 0.00 4.04
2504 2737 2.922503 TCGCCCAGCTCCTTGACA 60.923 61.111 0.00 0.00 0.00 3.58
2514 2747 0.539051 CTCCTTGACAATCCGAGCCT 59.461 55.000 0.00 0.00 0.00 4.58
2525 2758 0.245539 TCCGAGCCTGACGTAAAAGG 59.754 55.000 6.99 6.99 36.58 3.11
2526 2759 0.739813 CCGAGCCTGACGTAAAAGGG 60.740 60.000 12.07 1.51 33.87 3.95
2527 2760 0.739813 CGAGCCTGACGTAAAAGGGG 60.740 60.000 12.07 0.00 33.87 4.79
2528 2761 0.392595 GAGCCTGACGTAAAAGGGGG 60.393 60.000 12.07 0.00 33.87 5.40
2529 2762 2.044555 GCCTGACGTAAAAGGGGGC 61.045 63.158 12.07 0.00 33.87 5.80
2530 2763 1.743995 CCTGACGTAAAAGGGGGCG 60.744 63.158 3.93 0.00 0.00 6.13
2531 2764 1.004200 CTGACGTAAAAGGGGGCGT 60.004 57.895 0.00 0.00 40.44 5.68
2532 2765 1.296056 CTGACGTAAAAGGGGGCGTG 61.296 60.000 0.00 0.00 37.71 5.34
2533 2766 2.670592 ACGTAAAAGGGGGCGTGC 60.671 61.111 0.00 0.00 36.16 5.34
2534 2767 2.359478 CGTAAAAGGGGGCGTGCT 60.359 61.111 0.00 0.00 0.00 4.40
2535 2768 1.969589 CGTAAAAGGGGGCGTGCTT 60.970 57.895 0.00 0.00 0.00 3.91
2536 2769 1.520600 CGTAAAAGGGGGCGTGCTTT 61.521 55.000 0.00 0.00 0.00 3.51
2537 2770 1.536940 GTAAAAGGGGGCGTGCTTTA 58.463 50.000 0.00 0.00 0.00 1.85
2538 2771 2.097036 GTAAAAGGGGGCGTGCTTTAT 58.903 47.619 0.00 0.00 0.00 1.40
2539 2772 1.639722 AAAAGGGGGCGTGCTTTATT 58.360 45.000 0.00 0.00 0.00 1.40
2540 2773 1.639722 AAAGGGGGCGTGCTTTATTT 58.360 45.000 0.00 0.00 0.00 1.40
2541 2774 1.639722 AAGGGGGCGTGCTTTATTTT 58.360 45.000 0.00 0.00 0.00 1.82
2542 2775 2.517998 AGGGGGCGTGCTTTATTTTA 57.482 45.000 0.00 0.00 0.00 1.52
2543 2776 2.375146 AGGGGGCGTGCTTTATTTTAG 58.625 47.619 0.00 0.00 0.00 1.85
2544 2777 2.025699 AGGGGGCGTGCTTTATTTTAGA 60.026 45.455 0.00 0.00 0.00 2.10
2545 2778 2.756207 GGGGGCGTGCTTTATTTTAGAA 59.244 45.455 0.00 0.00 0.00 2.10
2546 2779 3.383505 GGGGGCGTGCTTTATTTTAGAAT 59.616 43.478 0.00 0.00 0.00 2.40
2547 2780 4.499188 GGGGGCGTGCTTTATTTTAGAATC 60.499 45.833 0.00 0.00 0.00 2.52
2548 2781 4.499188 GGGGCGTGCTTTATTTTAGAATCC 60.499 45.833 0.00 0.00 0.00 3.01
2549 2782 4.499188 GGGCGTGCTTTATTTTAGAATCCC 60.499 45.833 0.00 0.00 0.00 3.85
2550 2783 4.338400 GGCGTGCTTTATTTTAGAATCCCT 59.662 41.667 0.00 0.00 0.00 4.20
2551 2784 5.505819 GGCGTGCTTTATTTTAGAATCCCTC 60.506 44.000 0.00 0.00 0.00 4.30
2552 2785 5.065988 GCGTGCTTTATTTTAGAATCCCTCA 59.934 40.000 0.00 0.00 0.00 3.86
2553 2786 6.719365 CGTGCTTTATTTTAGAATCCCTCAG 58.281 40.000 0.00 0.00 0.00 3.35
2554 2787 6.316390 CGTGCTTTATTTTAGAATCCCTCAGT 59.684 38.462 0.00 0.00 0.00 3.41
2555 2788 7.475840 GTGCTTTATTTTAGAATCCCTCAGTG 58.524 38.462 0.00 0.00 0.00 3.66
2556 2789 7.336931 GTGCTTTATTTTAGAATCCCTCAGTGA 59.663 37.037 0.00 0.00 0.00 3.41
2557 2790 7.888021 TGCTTTATTTTAGAATCCCTCAGTGAA 59.112 33.333 0.00 0.00 0.00 3.18
2558 2791 8.739972 GCTTTATTTTAGAATCCCTCAGTGAAA 58.260 33.333 0.00 0.00 0.00 2.69
2561 2794 7.888250 ATTTTAGAATCCCTCAGTGAAATCC 57.112 36.000 0.00 0.00 0.00 3.01
2562 2795 6.387192 TTTAGAATCCCTCAGTGAAATCCA 57.613 37.500 0.00 0.00 0.00 3.41
2563 2796 4.934797 AGAATCCCTCAGTGAAATCCAA 57.065 40.909 0.00 0.00 0.00 3.53
2564 2797 5.261040 AGAATCCCTCAGTGAAATCCAAA 57.739 39.130 0.00 0.00 0.00 3.28
2565 2798 5.644188 AGAATCCCTCAGTGAAATCCAAAA 58.356 37.500 0.00 0.00 0.00 2.44
2566 2799 5.478332 AGAATCCCTCAGTGAAATCCAAAAC 59.522 40.000 0.00 0.00 0.00 2.43
2567 2800 4.453480 TCCCTCAGTGAAATCCAAAACT 57.547 40.909 0.00 0.00 0.00 2.66
2568 2801 4.144297 TCCCTCAGTGAAATCCAAAACTG 58.856 43.478 0.00 0.00 41.11 3.16
2569 2802 3.891366 CCCTCAGTGAAATCCAAAACTGT 59.109 43.478 0.00 0.00 40.69 3.55
2570 2803 4.022849 CCCTCAGTGAAATCCAAAACTGTC 60.023 45.833 0.00 0.00 40.69 3.51
2571 2804 4.823989 CCTCAGTGAAATCCAAAACTGTCT 59.176 41.667 0.00 0.00 40.69 3.41
2572 2805 5.997746 CCTCAGTGAAATCCAAAACTGTCTA 59.002 40.000 0.00 0.00 40.69 2.59
2573 2806 6.073003 CCTCAGTGAAATCCAAAACTGTCTAC 60.073 42.308 0.00 0.00 40.69 2.59
2574 2807 5.763204 TCAGTGAAATCCAAAACTGTCTACC 59.237 40.000 0.00 0.00 40.69 3.18
2575 2808 5.530915 CAGTGAAATCCAAAACTGTCTACCA 59.469 40.000 0.00 0.00 36.20 3.25
2576 2809 6.039270 CAGTGAAATCCAAAACTGTCTACCAA 59.961 38.462 0.00 0.00 36.20 3.67
2577 2810 6.777580 AGTGAAATCCAAAACTGTCTACCAAT 59.222 34.615 0.00 0.00 0.00 3.16
2578 2811 7.287696 AGTGAAATCCAAAACTGTCTACCAATT 59.712 33.333 0.00 0.00 0.00 2.32
2579 2812 8.573035 GTGAAATCCAAAACTGTCTACCAATTA 58.427 33.333 0.00 0.00 0.00 1.40
2580 2813 9.308000 TGAAATCCAAAACTGTCTACCAATTAT 57.692 29.630 0.00 0.00 0.00 1.28
2583 2816 9.975218 AATCCAAAACTGTCTACCAATTATACT 57.025 29.630 0.00 0.00 0.00 2.12
2584 2817 9.975218 ATCCAAAACTGTCTACCAATTATACTT 57.025 29.630 0.00 0.00 0.00 2.24
2590 2823 9.760077 AACTGTCTACCAATTATACTTATTCCG 57.240 33.333 0.00 0.00 0.00 4.30
2591 2824 9.139734 ACTGTCTACCAATTATACTTATTCCGA 57.860 33.333 0.00 0.00 0.00 4.55
2606 2839 8.585189 ACTTATTCCGATATAAAGAACGAACC 57.415 34.615 0.00 0.00 0.00 3.62
2607 2840 7.654923 ACTTATTCCGATATAAAGAACGAACCC 59.345 37.037 0.00 0.00 0.00 4.11
2608 2841 5.603170 TTCCGATATAAAGAACGAACCCT 57.397 39.130 0.00 0.00 0.00 4.34
2609 2842 6.713762 TTCCGATATAAAGAACGAACCCTA 57.286 37.500 0.00 0.00 0.00 3.53
2610 2843 6.713762 TCCGATATAAAGAACGAACCCTAA 57.286 37.500 0.00 0.00 0.00 2.69
2611 2844 7.294017 TCCGATATAAAGAACGAACCCTAAT 57.706 36.000 0.00 0.00 0.00 1.73
2612 2845 7.729116 TCCGATATAAAGAACGAACCCTAATT 58.271 34.615 0.00 0.00 0.00 1.40
2613 2846 8.206189 TCCGATATAAAGAACGAACCCTAATTT 58.794 33.333 0.00 0.00 0.00 1.82
2614 2847 8.833493 CCGATATAAAGAACGAACCCTAATTTT 58.167 33.333 0.00 0.00 0.00 1.82
2662 2895 9.720769 TTAAAGCATATAGGCATAGTAAAGTCC 57.279 33.333 12.54 0.00 35.83 3.85
2663 2896 5.967088 AGCATATAGGCATAGTAAAGTCCG 58.033 41.667 12.54 0.00 35.83 4.79
2664 2897 5.480772 AGCATATAGGCATAGTAAAGTCCGT 59.519 40.000 12.54 0.00 35.83 4.69
2665 2898 5.805994 GCATATAGGCATAGTAAAGTCCGTC 59.194 44.000 4.13 0.00 0.00 4.79
2666 2899 6.571731 GCATATAGGCATAGTAAAGTCCGTCA 60.572 42.308 4.13 0.00 0.00 4.35
2667 2900 7.548097 CATATAGGCATAGTAAAGTCCGTCAT 58.452 38.462 0.00 0.00 0.00 3.06
2668 2901 4.323553 AGGCATAGTAAAGTCCGTCATC 57.676 45.455 0.00 0.00 0.00 2.92
2669 2902 3.050619 GGCATAGTAAAGTCCGTCATCG 58.949 50.000 0.00 0.00 0.00 3.84
2679 2912 3.081133 CGTCATCGGAACCTTGCG 58.919 61.111 0.00 0.00 43.70 4.85
2680 2913 2.452813 CGTCATCGGAACCTTGCGG 61.453 63.158 0.00 0.00 42.53 5.69
2694 2927 3.961729 GCGGTTAGCGTGTTTCCT 58.038 55.556 5.55 0.00 35.41 3.36
2695 2928 1.785951 GCGGTTAGCGTGTTTCCTC 59.214 57.895 5.55 0.00 35.41 3.71
2696 2929 1.632948 GCGGTTAGCGTGTTTCCTCC 61.633 60.000 5.55 0.00 35.41 4.30
2697 2930 0.037605 CGGTTAGCGTGTTTCCTCCT 60.038 55.000 0.00 0.00 0.00 3.69
2698 2931 1.439679 GGTTAGCGTGTTTCCTCCTG 58.560 55.000 0.00 0.00 0.00 3.86
2699 2932 1.270678 GGTTAGCGTGTTTCCTCCTGT 60.271 52.381 0.00 0.00 0.00 4.00
2700 2933 2.028748 GGTTAGCGTGTTTCCTCCTGTA 60.029 50.000 0.00 0.00 0.00 2.74
2701 2934 3.251571 GTTAGCGTGTTTCCTCCTGTAG 58.748 50.000 0.00 0.00 0.00 2.74
2702 2935 0.037232 AGCGTGTTTCCTCCTGTAGC 60.037 55.000 0.00 0.00 0.00 3.58
2703 2936 1.352156 GCGTGTTTCCTCCTGTAGCG 61.352 60.000 0.00 0.00 0.00 4.26
2704 2937 0.242825 CGTGTTTCCTCCTGTAGCGA 59.757 55.000 0.00 0.00 0.00 4.93
2705 2938 1.732732 CGTGTTTCCTCCTGTAGCGAG 60.733 57.143 0.00 0.00 0.00 5.03
2706 2939 0.246635 TGTTTCCTCCTGTAGCGAGC 59.753 55.000 0.00 0.00 0.00 5.03
2707 2940 0.802607 GTTTCCTCCTGTAGCGAGCG 60.803 60.000 0.00 0.00 0.00 5.03
2708 2941 1.945354 TTTCCTCCTGTAGCGAGCGG 61.945 60.000 0.00 0.00 0.00 5.52
2709 2942 4.577246 CCTCCTGTAGCGAGCGGC 62.577 72.222 0.00 0.00 44.05 6.53
2729 2962 4.644103 GCATGTTTGCTGATACATTCCT 57.356 40.909 0.00 0.00 45.77 3.36
2730 2963 5.756195 GCATGTTTGCTGATACATTCCTA 57.244 39.130 0.00 0.00 45.77 2.94
2731 2964 6.323203 GCATGTTTGCTGATACATTCCTAT 57.677 37.500 0.00 0.00 45.77 2.57
2732 2965 6.147581 GCATGTTTGCTGATACATTCCTATG 58.852 40.000 0.00 0.00 45.77 2.23
2733 2966 6.238842 GCATGTTTGCTGATACATTCCTATGT 60.239 38.462 0.00 0.00 45.77 2.29
2734 2967 7.682741 GCATGTTTGCTGATACATTCCTATGTT 60.683 37.037 0.00 0.00 42.77 2.71
2735 2968 7.701539 TGTTTGCTGATACATTCCTATGTTT 57.298 32.000 0.00 0.00 42.29 2.83
2736 2969 8.800370 TGTTTGCTGATACATTCCTATGTTTA 57.200 30.769 0.00 0.00 42.29 2.01
2737 2970 8.673711 TGTTTGCTGATACATTCCTATGTTTAC 58.326 33.333 0.00 0.00 42.29 2.01
2738 2971 7.477144 TTGCTGATACATTCCTATGTTTACG 57.523 36.000 0.00 0.00 42.29 3.18
2739 2972 6.578944 TGCTGATACATTCCTATGTTTACGT 58.421 36.000 0.00 0.00 42.29 3.57
2740 2973 7.045416 TGCTGATACATTCCTATGTTTACGTT 58.955 34.615 0.00 0.00 42.29 3.99
2741 2974 8.198778 TGCTGATACATTCCTATGTTTACGTTA 58.801 33.333 0.00 0.00 42.29 3.18
2742 2975 9.204570 GCTGATACATTCCTATGTTTACGTTAT 57.795 33.333 0.00 0.00 42.29 1.89
2748 2981 9.257651 ACATTCCTATGTTTACGTTATTAGCTC 57.742 33.333 0.00 0.00 42.29 4.09
2749 2982 7.919313 TTCCTATGTTTACGTTATTAGCTCG 57.081 36.000 0.00 0.00 0.00 5.03
2750 2983 5.916883 TCCTATGTTTACGTTATTAGCTCGC 59.083 40.000 0.00 0.00 0.00 5.03
2751 2984 5.688621 CCTATGTTTACGTTATTAGCTCGCA 59.311 40.000 0.00 0.00 0.00 5.10
2752 2985 6.365247 CCTATGTTTACGTTATTAGCTCGCAT 59.635 38.462 0.00 0.00 0.00 4.73
2753 2986 5.630896 TGTTTACGTTATTAGCTCGCATC 57.369 39.130 0.00 0.00 0.00 3.91
2754 2987 5.345702 TGTTTACGTTATTAGCTCGCATCT 58.654 37.500 0.00 0.00 0.00 2.90
2755 2988 5.808540 TGTTTACGTTATTAGCTCGCATCTT 59.191 36.000 0.00 0.00 0.00 2.40
2756 2989 6.311935 TGTTTACGTTATTAGCTCGCATCTTT 59.688 34.615 0.00 0.00 0.00 2.52
2757 2990 7.488792 TGTTTACGTTATTAGCTCGCATCTTTA 59.511 33.333 0.00 0.00 0.00 1.85
2758 2991 8.485591 GTTTACGTTATTAGCTCGCATCTTTAT 58.514 33.333 0.00 0.00 0.00 1.40
2759 2992 6.453643 ACGTTATTAGCTCGCATCTTTATG 57.546 37.500 0.00 0.00 36.09 1.90
2760 2993 5.983720 ACGTTATTAGCTCGCATCTTTATGT 59.016 36.000 0.00 0.00 35.38 2.29
2761 2994 6.074302 ACGTTATTAGCTCGCATCTTTATGTG 60.074 38.462 0.00 0.00 43.63 3.21
2762 2995 6.593978 GTTATTAGCTCGCATCTTTATGTGG 58.406 40.000 0.00 0.00 42.71 4.17
2763 2996 2.698855 AGCTCGCATCTTTATGTGGT 57.301 45.000 0.00 0.00 42.71 4.16
2764 2997 3.819564 AGCTCGCATCTTTATGTGGTA 57.180 42.857 0.00 0.00 42.71 3.25
2765 2998 3.458189 AGCTCGCATCTTTATGTGGTAC 58.542 45.455 0.00 0.00 42.71 3.34
2766 2999 3.133003 AGCTCGCATCTTTATGTGGTACT 59.867 43.478 0.00 0.00 42.71 2.73
2767 3000 3.491267 GCTCGCATCTTTATGTGGTACTC 59.509 47.826 0.00 0.00 42.71 2.59
2768 3001 4.051922 CTCGCATCTTTATGTGGTACTCC 58.948 47.826 0.00 0.00 42.71 3.85
2769 3002 3.131396 CGCATCTTTATGTGGTACTCCC 58.869 50.000 0.00 0.00 39.49 4.30
2770 3003 3.181465 CGCATCTTTATGTGGTACTCCCT 60.181 47.826 0.00 0.00 39.49 4.20
2771 3004 4.683400 CGCATCTTTATGTGGTACTCCCTT 60.683 45.833 0.00 0.00 39.49 3.95
2772 3005 5.193679 GCATCTTTATGTGGTACTCCCTTT 58.806 41.667 0.00 0.00 35.38 3.11
2773 3006 5.066505 GCATCTTTATGTGGTACTCCCTTTG 59.933 44.000 0.00 0.00 35.38 2.77
2774 3007 5.836024 TCTTTATGTGGTACTCCCTTTGT 57.164 39.130 0.00 0.00 0.00 2.83
2775 3008 6.195600 TCTTTATGTGGTACTCCCTTTGTT 57.804 37.500 0.00 0.00 0.00 2.83
2776 3009 6.235664 TCTTTATGTGGTACTCCCTTTGTTC 58.764 40.000 0.00 0.00 0.00 3.18
2777 3010 2.943036 TGTGGTACTCCCTTTGTTCC 57.057 50.000 0.00 0.00 0.00 3.62
2778 3011 2.414612 TGTGGTACTCCCTTTGTTCCT 58.585 47.619 0.00 0.00 0.00 3.36
2779 3012 3.589641 TGTGGTACTCCCTTTGTTCCTA 58.410 45.455 0.00 0.00 0.00 2.94
2780 3013 3.975312 TGTGGTACTCCCTTTGTTCCTAA 59.025 43.478 0.00 0.00 0.00 2.69
2781 3014 4.412858 TGTGGTACTCCCTTTGTTCCTAAA 59.587 41.667 0.00 0.00 0.00 1.85
2782 3015 5.073965 TGTGGTACTCCCTTTGTTCCTAAAT 59.926 40.000 0.00 0.00 0.00 1.40
2783 3016 6.272792 TGTGGTACTCCCTTTGTTCCTAAATA 59.727 38.462 0.00 0.00 0.00 1.40
2784 3017 6.822170 GTGGTACTCCCTTTGTTCCTAAATAG 59.178 42.308 0.00 0.00 0.00 1.73
2785 3018 6.502863 TGGTACTCCCTTTGTTCCTAAATAGT 59.497 38.462 0.00 0.00 0.00 2.12
2786 3019 7.679453 TGGTACTCCCTTTGTTCCTAAATAGTA 59.321 37.037 0.00 0.00 0.00 1.82
2787 3020 8.712103 GGTACTCCCTTTGTTCCTAAATAGTAT 58.288 37.037 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 4.202243 ACAGCATTACAAGCACACCAAAAT 60.202 37.500 0.00 0.00 0.00 1.82
175 176 9.715121 AAGGAAACGACTAATATAAAGTGTTGA 57.285 29.630 0.00 0.00 0.00 3.18
232 233 3.497763 CCATCAACCGGCCAGGAATAATA 60.498 47.826 18.74 1.01 45.00 0.98
233 234 2.586425 CATCAACCGGCCAGGAATAAT 58.414 47.619 18.74 5.53 45.00 1.28
266 267 2.093447 GCTTGAGTAGAGCCTGGCTTTA 60.093 50.000 24.26 18.97 39.88 1.85
302 303 7.062749 TGGCTATAATAGAACGAATCACCTT 57.937 36.000 0.00 0.00 0.00 3.50
307 308 8.589335 TTTCACTGGCTATAATAGAACGAATC 57.411 34.615 0.00 0.00 0.00 2.52
308 309 9.561069 AATTTCACTGGCTATAATAGAACGAAT 57.439 29.630 0.00 0.00 0.00 3.34
309 310 8.958119 AATTTCACTGGCTATAATAGAACGAA 57.042 30.769 0.00 0.00 0.00 3.85
310 311 8.201464 TGAATTTCACTGGCTATAATAGAACGA 58.799 33.333 0.00 0.00 0.00 3.85
311 312 8.276325 GTGAATTTCACTGGCTATAATAGAACG 58.724 37.037 19.90 0.00 43.73 3.95
332 333 7.923344 CCGACTCTCTGTTATTTCTATGTGAAT 59.077 37.037 0.00 0.00 34.24 2.57
350 351 3.612004 CGGTTTATCTATGGCCGACTCTC 60.612 52.174 0.00 0.00 44.57 3.20
351 352 2.296471 CGGTTTATCTATGGCCGACTCT 59.704 50.000 0.00 0.00 44.57 3.24
463 464 4.498682 GCGCCAAATCTCTTGAAGCATATT 60.499 41.667 0.00 0.00 0.00 1.28
472 473 0.449388 GGACTGCGCCAAATCTCTTG 59.551 55.000 4.18 0.00 0.00 3.02
474 475 1.448540 CGGACTGCGCCAAATCTCT 60.449 57.895 4.18 0.00 0.00 3.10
481 482 2.185867 GATAACCGGACTGCGCCA 59.814 61.111 9.46 0.00 0.00 5.69
482 483 2.171725 GTGATAACCGGACTGCGCC 61.172 63.158 9.46 0.00 0.00 6.53
483 484 0.101759 TAGTGATAACCGGACTGCGC 59.898 55.000 9.46 0.00 0.00 6.09
484 485 1.836383 GTAGTGATAACCGGACTGCG 58.164 55.000 9.46 0.00 0.00 5.18
485 486 1.133790 ACGTAGTGATAACCGGACTGC 59.866 52.381 9.46 2.91 42.51 4.40
504 505 1.904852 TACGAGGACGCGTCTGTCAC 61.905 60.000 35.50 20.29 44.39 3.67
505 506 1.022982 ATACGAGGACGCGTCTGTCA 61.023 55.000 35.50 18.67 44.39 3.58
506 507 0.316032 GATACGAGGACGCGTCTGTC 60.316 60.000 35.50 28.87 44.39 3.51
507 508 1.712977 GGATACGAGGACGCGTCTGT 61.713 60.000 35.50 30.16 44.39 3.41
508 509 1.009900 GGATACGAGGACGCGTCTG 60.010 63.158 35.50 26.76 44.39 3.51
509 510 1.450848 TGGATACGAGGACGCGTCT 60.451 57.895 35.50 22.76 44.39 4.18
510 511 1.298190 GTGGATACGAGGACGCGTC 60.298 63.158 30.67 30.67 44.39 5.19
512 513 2.025727 GGTGGATACGAGGACGCG 59.974 66.667 3.53 3.53 43.96 6.01
513 514 2.416260 GGGTGGATACGAGGACGC 59.584 66.667 0.00 0.00 43.96 5.19
514 515 1.755395 TGGGGTGGATACGAGGACG 60.755 63.158 0.00 0.00 45.75 4.79
515 516 0.974010 TGTGGGGTGGATACGAGGAC 60.974 60.000 0.00 0.00 42.51 3.85
516 517 0.031515 ATGTGGGGTGGATACGAGGA 60.032 55.000 0.00 0.00 42.51 3.71
517 518 1.712056 TATGTGGGGTGGATACGAGG 58.288 55.000 0.00 0.00 42.51 4.63
518 519 4.620803 GCTTATATGTGGGGTGGATACGAG 60.621 50.000 0.00 0.00 42.51 4.18
519 520 3.259876 GCTTATATGTGGGGTGGATACGA 59.740 47.826 0.00 0.00 42.51 3.43
520 521 3.260884 AGCTTATATGTGGGGTGGATACG 59.739 47.826 0.00 0.00 42.51 3.06
521 522 4.565652 CCAGCTTATATGTGGGGTGGATAC 60.566 50.000 4.29 0.00 46.43 2.24
522 523 3.587061 CCAGCTTATATGTGGGGTGGATA 59.413 47.826 4.29 0.00 46.43 2.59
523 524 2.376518 CCAGCTTATATGTGGGGTGGAT 59.623 50.000 4.29 0.00 46.43 3.41
524 525 1.774254 CCAGCTTATATGTGGGGTGGA 59.226 52.381 4.29 0.00 46.43 4.02
525 526 1.202927 CCCAGCTTATATGTGGGGTGG 60.203 57.143 13.83 0.00 46.47 4.61
526 527 2.276732 CCCAGCTTATATGTGGGGTG 57.723 55.000 13.83 0.00 46.47 4.61
530 531 5.186198 GCCTAATACCCAGCTTATATGTGG 58.814 45.833 0.00 0.00 0.00 4.17
531 532 4.870426 CGCCTAATACCCAGCTTATATGTG 59.130 45.833 0.00 0.00 0.00 3.21
532 533 4.530946 ACGCCTAATACCCAGCTTATATGT 59.469 41.667 0.00 0.00 0.00 2.29
533 534 5.086104 ACGCCTAATACCCAGCTTATATG 57.914 43.478 0.00 0.00 0.00 1.78
534 535 4.142227 CGACGCCTAATACCCAGCTTATAT 60.142 45.833 0.00 0.00 0.00 0.86
535 536 3.192001 CGACGCCTAATACCCAGCTTATA 59.808 47.826 0.00 0.00 0.00 0.98
536 537 2.029290 CGACGCCTAATACCCAGCTTAT 60.029 50.000 0.00 0.00 0.00 1.73
537 538 1.338973 CGACGCCTAATACCCAGCTTA 59.661 52.381 0.00 0.00 0.00 3.09
538 539 0.104304 CGACGCCTAATACCCAGCTT 59.896 55.000 0.00 0.00 0.00 3.74
539 540 1.740285 CGACGCCTAATACCCAGCT 59.260 57.895 0.00 0.00 0.00 4.24
540 541 1.954651 GCGACGCCTAATACCCAGC 60.955 63.158 9.14 0.00 0.00 4.85
541 542 1.300697 GGCGACGCCTAATACCCAG 60.301 63.158 31.30 0.00 46.69 4.45
542 543 2.816718 GGCGACGCCTAATACCCA 59.183 61.111 31.30 0.00 46.69 4.51
572 573 1.802553 AACCGGCCCTATATGTCTGT 58.197 50.000 0.00 0.00 0.00 3.41
598 599 0.249280 CTTTTTGCCACCCAACCGAC 60.249 55.000 0.00 0.00 31.97 4.79
632 633 2.221749 CCTTCATATGCACGTTCGATGG 59.778 50.000 0.00 0.00 0.00 3.51
633 634 2.221749 CCCTTCATATGCACGTTCGATG 59.778 50.000 0.00 0.00 0.00 3.84
644 645 4.350816 TGGACCCTTCATACCCTTCATATG 59.649 45.833 0.00 0.00 0.00 1.78
850 851 6.375736 TCCACACGGCAATCTTGATTTATTTA 59.624 34.615 0.00 0.00 0.00 1.40
853 854 4.096382 GTCCACACGGCAATCTTGATTTAT 59.904 41.667 0.00 0.00 0.00 1.40
854 855 3.438781 GTCCACACGGCAATCTTGATTTA 59.561 43.478 0.00 0.00 0.00 1.40
855 856 2.228822 GTCCACACGGCAATCTTGATTT 59.771 45.455 0.00 0.00 0.00 2.17
936 944 3.249799 CGCATCCGATCTATCCTAGCTAG 59.750 52.174 14.20 14.20 36.29 3.42
937 945 3.118371 TCGCATCCGATCTATCCTAGCTA 60.118 47.826 0.00 0.00 38.82 3.32
938 946 2.020720 CGCATCCGATCTATCCTAGCT 58.979 52.381 0.00 0.00 36.29 3.32
939 947 2.017782 TCGCATCCGATCTATCCTAGC 58.982 52.381 0.00 0.00 38.82 3.42
1018 1028 7.443575 CCTTCTGTTTTCTTCTCTTCTCAATGA 59.556 37.037 0.00 0.00 0.00 2.57
1205 1239 2.416432 CCTTCCGGTCCTCCTCGTC 61.416 68.421 0.00 0.00 0.00 4.20
1388 1422 2.081425 CTCTTCATCTCCTCGGCCGG 62.081 65.000 27.83 16.14 0.00 6.13
1539 1573 1.087501 GCTTAACTTCTTGGCCTCGG 58.912 55.000 3.32 0.00 0.00 4.63
1555 1589 0.968901 TCTCCCACCGTATGTCGCTT 60.969 55.000 0.00 0.00 38.35 4.68
1561 1595 3.005897 CCATAAGTCTCTCCCACCGTATG 59.994 52.174 0.00 0.00 0.00 2.39
1579 1613 2.292794 GACTCAAGACGGGCGCCATA 62.293 60.000 30.85 3.52 0.00 2.74
1659 1711 0.107800 CGAGTAGTCCTCCTCGTCCA 60.108 60.000 1.57 0.00 44.14 4.02
1660 1712 0.814812 CCGAGTAGTCCTCCTCGTCC 60.815 65.000 8.23 0.00 46.91 4.79
1661 1713 0.177604 TCCGAGTAGTCCTCCTCGTC 59.822 60.000 8.23 0.00 46.91 4.20
1662 1714 0.178533 CTCCGAGTAGTCCTCCTCGT 59.821 60.000 8.23 0.00 46.91 4.18
1664 1716 0.547553 ACCTCCGAGTAGTCCTCCTC 59.452 60.000 0.00 0.00 36.82 3.71
1665 1717 0.256464 CACCTCCGAGTAGTCCTCCT 59.744 60.000 0.00 0.00 36.82 3.69
1666 1718 0.752376 CCACCTCCGAGTAGTCCTCC 60.752 65.000 0.00 0.00 36.82 4.30
1667 1719 0.752376 CCCACCTCCGAGTAGTCCTC 60.752 65.000 0.00 0.00 36.80 3.71
1668 1720 1.212934 TCCCACCTCCGAGTAGTCCT 61.213 60.000 0.00 0.00 0.00 3.85
1669 1721 0.752376 CTCCCACCTCCGAGTAGTCC 60.752 65.000 0.00 0.00 0.00 3.85
1670 1722 0.255318 TCTCCCACCTCCGAGTAGTC 59.745 60.000 0.00 0.00 0.00 2.59
1671 1723 0.256464 CTCTCCCACCTCCGAGTAGT 59.744 60.000 0.00 0.00 0.00 2.73
1672 1724 0.466555 CCTCTCCCACCTCCGAGTAG 60.467 65.000 0.00 0.00 0.00 2.57
1673 1725 0.917821 TCCTCTCCCACCTCCGAGTA 60.918 60.000 0.00 0.00 0.00 2.59
1674 1726 2.218115 CTCCTCTCCCACCTCCGAGT 62.218 65.000 0.00 0.00 0.00 4.18
1675 1727 1.454847 CTCCTCTCCCACCTCCGAG 60.455 68.421 0.00 0.00 0.00 4.63
1676 1728 2.684104 CTCCTCTCCCACCTCCGA 59.316 66.667 0.00 0.00 0.00 4.55
1682 1734 2.766229 GCCCTCCTCCTCTCCCAC 60.766 72.222 0.00 0.00 0.00 4.61
1892 1952 2.082231 AGAGCAAATGTAGCACTGCAG 58.918 47.619 13.48 13.48 37.26 4.41
2029 2218 0.807496 GAAACAGATGGAGCACCTGC 59.193 55.000 0.71 0.00 42.49 4.85
2063 2252 2.606272 CGACGGGGCAAGTAACTTTATC 59.394 50.000 0.00 0.00 0.00 1.75
2102 2291 2.933878 TTAATGGTAGGGCAGCGGCG 62.934 60.000 0.51 0.51 42.47 6.46
2103 2292 0.750182 TTTAATGGTAGGGCAGCGGC 60.750 55.000 0.00 0.00 40.13 6.53
2104 2293 1.134220 TCTTTAATGGTAGGGCAGCGG 60.134 52.381 0.00 0.00 0.00 5.52
2105 2294 2.325583 TCTTTAATGGTAGGGCAGCG 57.674 50.000 0.00 0.00 0.00 5.18
2106 2295 7.665974 AGTTTATATCTTTAATGGTAGGGCAGC 59.334 37.037 0.00 0.00 0.00 5.25
2107 2296 9.574516 AAGTTTATATCTTTAATGGTAGGGCAG 57.425 33.333 0.00 0.00 0.00 4.85
2108 2297 9.569122 GAAGTTTATATCTTTAATGGTAGGGCA 57.431 33.333 0.00 0.00 0.00 5.36
2109 2298 9.794719 AGAAGTTTATATCTTTAATGGTAGGGC 57.205 33.333 0.00 0.00 0.00 5.19
2114 2303 9.343539 GGCAGAGAAGTTTATATCTTTAATGGT 57.656 33.333 0.00 0.00 0.00 3.55
2115 2304 9.566432 AGGCAGAGAAGTTTATATCTTTAATGG 57.434 33.333 0.00 0.00 0.00 3.16
2117 2306 9.785982 GGAGGCAGAGAAGTTTATATCTTTAAT 57.214 33.333 0.00 0.00 0.00 1.40
2118 2307 8.768397 TGGAGGCAGAGAAGTTTATATCTTTAA 58.232 33.333 0.00 0.00 0.00 1.52
2119 2308 8.319057 TGGAGGCAGAGAAGTTTATATCTTTA 57.681 34.615 0.00 0.00 0.00 1.85
2120 2309 7.200434 TGGAGGCAGAGAAGTTTATATCTTT 57.800 36.000 0.00 0.00 0.00 2.52
2121 2310 6.814954 TGGAGGCAGAGAAGTTTATATCTT 57.185 37.500 0.00 0.00 0.00 2.40
2122 2311 6.385467 AGTTGGAGGCAGAGAAGTTTATATCT 59.615 38.462 0.00 0.00 0.00 1.98
2123 2312 6.587273 AGTTGGAGGCAGAGAAGTTTATATC 58.413 40.000 0.00 0.00 0.00 1.63
2124 2313 6.408662 GGAGTTGGAGGCAGAGAAGTTTATAT 60.409 42.308 0.00 0.00 0.00 0.86
2125 2314 5.104900 GGAGTTGGAGGCAGAGAAGTTTATA 60.105 44.000 0.00 0.00 0.00 0.98
2126 2315 4.323868 GGAGTTGGAGGCAGAGAAGTTTAT 60.324 45.833 0.00 0.00 0.00 1.40
2127 2316 3.008049 GGAGTTGGAGGCAGAGAAGTTTA 59.992 47.826 0.00 0.00 0.00 2.01
2128 2317 2.224646 GGAGTTGGAGGCAGAGAAGTTT 60.225 50.000 0.00 0.00 0.00 2.66
2129 2318 1.349357 GGAGTTGGAGGCAGAGAAGTT 59.651 52.381 0.00 0.00 0.00 2.66
2130 2319 0.980423 GGAGTTGGAGGCAGAGAAGT 59.020 55.000 0.00 0.00 0.00 3.01
2131 2320 1.206849 GAGGAGTTGGAGGCAGAGAAG 59.793 57.143 0.00 0.00 0.00 2.85
2132 2321 1.270907 GAGGAGTTGGAGGCAGAGAA 58.729 55.000 0.00 0.00 0.00 2.87
2133 2322 0.616111 GGAGGAGTTGGAGGCAGAGA 60.616 60.000 0.00 0.00 0.00 3.10
2134 2323 0.617249 AGGAGGAGTTGGAGGCAGAG 60.617 60.000 0.00 0.00 0.00 3.35
2135 2324 0.616111 GAGGAGGAGTTGGAGGCAGA 60.616 60.000 0.00 0.00 0.00 4.26
2136 2325 1.621672 GGAGGAGGAGTTGGAGGCAG 61.622 65.000 0.00 0.00 0.00 4.85
2137 2326 1.613630 GGAGGAGGAGTTGGAGGCA 60.614 63.158 0.00 0.00 0.00 4.75
2138 2327 2.371259 GGGAGGAGGAGTTGGAGGC 61.371 68.421 0.00 0.00 0.00 4.70
2139 2328 1.690985 GGGGAGGAGGAGTTGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
2140 2329 1.690985 GGGGGAGGAGGAGTTGGAG 60.691 68.421 0.00 0.00 0.00 3.86
2141 2330 2.182858 GAGGGGGAGGAGGAGTTGGA 62.183 65.000 0.00 0.00 0.00 3.53
2142 2331 1.690985 GAGGGGGAGGAGGAGTTGG 60.691 68.421 0.00 0.00 0.00 3.77
2143 2332 0.252927 AAGAGGGGGAGGAGGAGTTG 60.253 60.000 0.00 0.00 0.00 3.16
2144 2333 0.043485 GAAGAGGGGGAGGAGGAGTT 59.957 60.000 0.00 0.00 0.00 3.01
2145 2334 0.858139 AGAAGAGGGGGAGGAGGAGT 60.858 60.000 0.00 0.00 0.00 3.85
2146 2335 0.341609 AAGAAGAGGGGGAGGAGGAG 59.658 60.000 0.00 0.00 0.00 3.69
2147 2336 0.340208 GAAGAAGAGGGGGAGGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
2148 2337 0.341609 AGAAGAAGAGGGGGAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
2149 2338 2.115427 GAAGAAGAAGAGGGGGAGGAG 58.885 57.143 0.00 0.00 0.00 3.69
2150 2339 1.437149 TGAAGAAGAAGAGGGGGAGGA 59.563 52.381 0.00 0.00 0.00 3.71
2151 2340 1.557371 GTGAAGAAGAAGAGGGGGAGG 59.443 57.143 0.00 0.00 0.00 4.30
2152 2341 1.557371 GGTGAAGAAGAAGAGGGGGAG 59.443 57.143 0.00 0.00 0.00 4.30
2153 2342 1.152271 AGGTGAAGAAGAAGAGGGGGA 59.848 52.381 0.00 0.00 0.00 4.81
2154 2343 1.662686 AGGTGAAGAAGAAGAGGGGG 58.337 55.000 0.00 0.00 0.00 5.40
2155 2344 2.909662 AGAAGGTGAAGAAGAAGAGGGG 59.090 50.000 0.00 0.00 0.00 4.79
2156 2345 4.285775 AGAAGAAGGTGAAGAAGAAGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
2157 2346 5.482163 AGAAGAAGGTGAAGAAGAAGAGG 57.518 43.478 0.00 0.00 0.00 3.69
2250 2457 1.075979 TGATGATGGCGACGACAACG 61.076 55.000 7.85 0.00 45.75 4.10
2257 2464 3.546815 CGGAAGAAAATGATGATGGCGAC 60.547 47.826 0.00 0.00 0.00 5.19
2323 2555 5.425539 AGAAACTAGCTGGCTCCAACTTATA 59.574 40.000 0.00 0.00 0.00 0.98
2335 2567 3.265791 CTGGCTACAAGAAACTAGCTGG 58.734 50.000 0.00 0.00 36.41 4.85
2369 2601 3.549794 AGACATAAGGCAAATCTCAGGC 58.450 45.455 0.00 0.00 0.00 4.85
2384 2616 4.404394 TGAGGATACAAGGCGAAAGACATA 59.596 41.667 0.00 0.00 41.17 2.29
2395 2627 2.695666 ACGAGTGGATGAGGATACAAGG 59.304 50.000 0.00 0.00 41.41 3.61
2396 2628 4.115516 CAACGAGTGGATGAGGATACAAG 58.884 47.826 0.00 0.00 41.41 3.16
2397 2629 3.767131 TCAACGAGTGGATGAGGATACAA 59.233 43.478 0.00 0.00 41.41 2.41
2398 2630 3.361786 TCAACGAGTGGATGAGGATACA 58.638 45.455 0.00 0.00 41.41 2.29
2399 2631 4.279671 AGATCAACGAGTGGATGAGGATAC 59.720 45.833 0.00 0.00 0.00 2.24
2400 2632 4.474394 AGATCAACGAGTGGATGAGGATA 58.526 43.478 0.00 0.00 0.00 2.59
2401 2633 3.303938 AGATCAACGAGTGGATGAGGAT 58.696 45.455 0.00 0.00 0.00 3.24
2402 2634 2.690497 GAGATCAACGAGTGGATGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
2406 2638 2.455032 GACGAGATCAACGAGTGGATG 58.545 52.381 16.73 0.00 34.70 3.51
2424 2656 2.732094 CGACCCGACAACGTGGAC 60.732 66.667 0.00 0.00 37.88 4.02
2504 2737 2.618053 CTTTTACGTCAGGCTCGGATT 58.382 47.619 0.00 0.00 0.00 3.01
2514 2747 1.301874 CACGCCCCCTTTTACGTCA 60.302 57.895 0.00 0.00 36.45 4.35
2525 2758 4.499188 GGATTCTAAAATAAAGCACGCCCC 60.499 45.833 0.00 0.00 0.00 5.80
2526 2759 4.499188 GGGATTCTAAAATAAAGCACGCCC 60.499 45.833 0.00 0.00 0.00 6.13
2527 2760 4.338400 AGGGATTCTAAAATAAAGCACGCC 59.662 41.667 0.00 0.00 0.00 5.68
2528 2761 5.065988 TGAGGGATTCTAAAATAAAGCACGC 59.934 40.000 0.00 0.00 0.00 5.34
2529 2762 6.316390 ACTGAGGGATTCTAAAATAAAGCACG 59.684 38.462 0.00 0.00 0.00 5.34
2530 2763 7.336931 TCACTGAGGGATTCTAAAATAAAGCAC 59.663 37.037 0.00 0.00 0.00 4.40
2531 2764 7.402054 TCACTGAGGGATTCTAAAATAAAGCA 58.598 34.615 0.00 0.00 0.00 3.91
2532 2765 7.865706 TCACTGAGGGATTCTAAAATAAAGC 57.134 36.000 0.00 0.00 0.00 3.51
2535 2768 9.408648 GGATTTCACTGAGGGATTCTAAAATAA 57.591 33.333 0.00 0.00 0.00 1.40
2536 2769 8.556589 TGGATTTCACTGAGGGATTCTAAAATA 58.443 33.333 0.00 0.00 0.00 1.40
2537 2770 7.413446 TGGATTTCACTGAGGGATTCTAAAAT 58.587 34.615 0.00 0.00 0.00 1.82
2538 2771 6.789268 TGGATTTCACTGAGGGATTCTAAAA 58.211 36.000 0.00 0.00 0.00 1.52
2539 2772 6.387192 TGGATTTCACTGAGGGATTCTAAA 57.613 37.500 0.00 0.00 0.00 1.85
2540 2773 6.387192 TTGGATTTCACTGAGGGATTCTAA 57.613 37.500 0.00 0.00 0.00 2.10
2541 2774 6.387192 TTTGGATTTCACTGAGGGATTCTA 57.613 37.500 0.00 0.00 0.00 2.10
2542 2775 4.934797 TTGGATTTCACTGAGGGATTCT 57.065 40.909 0.00 0.00 0.00 2.40
2543 2776 5.478332 AGTTTTGGATTTCACTGAGGGATTC 59.522 40.000 0.00 0.00 0.00 2.52
2544 2777 5.244626 CAGTTTTGGATTTCACTGAGGGATT 59.755 40.000 0.00 0.00 39.25 3.01
2545 2778 4.768968 CAGTTTTGGATTTCACTGAGGGAT 59.231 41.667 0.00 0.00 39.25 3.85
2546 2779 4.144297 CAGTTTTGGATTTCACTGAGGGA 58.856 43.478 0.00 0.00 39.25 4.20
2547 2780 3.891366 ACAGTTTTGGATTTCACTGAGGG 59.109 43.478 5.20 0.00 39.25 4.30
2548 2781 4.823989 AGACAGTTTTGGATTTCACTGAGG 59.176 41.667 5.20 0.00 39.25 3.86
2549 2782 6.073003 GGTAGACAGTTTTGGATTTCACTGAG 60.073 42.308 5.20 0.00 39.25 3.35
2550 2783 5.763204 GGTAGACAGTTTTGGATTTCACTGA 59.237 40.000 5.20 0.00 39.25 3.41
2551 2784 5.530915 TGGTAGACAGTTTTGGATTTCACTG 59.469 40.000 0.00 0.00 42.08 3.66
2552 2785 5.690865 TGGTAGACAGTTTTGGATTTCACT 58.309 37.500 0.00 0.00 0.00 3.41
2553 2786 6.385649 TTGGTAGACAGTTTTGGATTTCAC 57.614 37.500 0.00 0.00 0.00 3.18
2554 2787 7.595819 AATTGGTAGACAGTTTTGGATTTCA 57.404 32.000 0.00 0.00 0.00 2.69
2557 2790 9.975218 AGTATAATTGGTAGACAGTTTTGGATT 57.025 29.630 0.00 0.00 30.97 3.01
2558 2791 9.975218 AAGTATAATTGGTAGACAGTTTTGGAT 57.025 29.630 0.00 0.00 30.97 3.41
2564 2797 9.760077 CGGAATAAGTATAATTGGTAGACAGTT 57.240 33.333 0.00 0.00 33.26 3.16
2565 2798 9.139734 TCGGAATAAGTATAATTGGTAGACAGT 57.860 33.333 0.00 0.00 0.00 3.55
2580 2813 9.683069 GGTTCGTTCTTTATATCGGAATAAGTA 57.317 33.333 0.00 0.00 0.00 2.24
2581 2814 7.654923 GGGTTCGTTCTTTATATCGGAATAAGT 59.345 37.037 0.00 0.00 0.00 2.24
2582 2815 7.871463 AGGGTTCGTTCTTTATATCGGAATAAG 59.129 37.037 0.00 0.00 0.00 1.73
2583 2816 7.729116 AGGGTTCGTTCTTTATATCGGAATAA 58.271 34.615 0.00 0.00 0.00 1.40
2584 2817 7.294017 AGGGTTCGTTCTTTATATCGGAATA 57.706 36.000 0.00 0.00 0.00 1.75
2585 2818 6.170846 AGGGTTCGTTCTTTATATCGGAAT 57.829 37.500 0.00 0.00 0.00 3.01
2586 2819 5.603170 AGGGTTCGTTCTTTATATCGGAA 57.397 39.130 0.00 0.00 0.00 4.30
2587 2820 6.713762 TTAGGGTTCGTTCTTTATATCGGA 57.286 37.500 0.00 0.00 0.00 4.55
2588 2821 7.958053 AATTAGGGTTCGTTCTTTATATCGG 57.042 36.000 0.00 0.00 0.00 4.18
2636 2869 9.720769 GGACTTTACTATGCCTATATGCTTTAA 57.279 33.333 1.58 0.00 0.00 1.52
2637 2870 8.033038 CGGACTTTACTATGCCTATATGCTTTA 58.967 37.037 1.58 0.00 0.00 1.85
2638 2871 6.874134 CGGACTTTACTATGCCTATATGCTTT 59.126 38.462 1.58 0.00 0.00 3.51
2639 2872 6.014499 ACGGACTTTACTATGCCTATATGCTT 60.014 38.462 1.58 0.00 0.00 3.91
2640 2873 5.480772 ACGGACTTTACTATGCCTATATGCT 59.519 40.000 1.58 0.00 0.00 3.79
2641 2874 5.721232 ACGGACTTTACTATGCCTATATGC 58.279 41.667 0.00 0.00 0.00 3.14
2642 2875 6.920817 TGACGGACTTTACTATGCCTATATG 58.079 40.000 0.00 0.00 0.00 1.78
2643 2876 7.415318 CGATGACGGACTTTACTATGCCTATAT 60.415 40.741 0.00 0.00 35.72 0.86
2644 2877 6.128090 CGATGACGGACTTTACTATGCCTATA 60.128 42.308 0.00 0.00 35.72 1.31
2645 2878 5.335740 CGATGACGGACTTTACTATGCCTAT 60.336 44.000 0.00 0.00 35.72 2.57
2646 2879 4.023450 CGATGACGGACTTTACTATGCCTA 60.023 45.833 0.00 0.00 35.72 3.93
2647 2880 3.243434 CGATGACGGACTTTACTATGCCT 60.243 47.826 0.00 0.00 35.72 4.75
2648 2881 3.050619 CGATGACGGACTTTACTATGCC 58.949 50.000 0.00 0.00 35.72 4.40
2662 2895 3.081133 CGCAAGGTTCCGATGACG 58.919 61.111 0.00 0.00 39.43 4.35
2674 2907 0.110373 GGAAACACGCTAACCGCAAG 60.110 55.000 0.00 0.00 41.76 4.01
2675 2908 0.533308 AGGAAACACGCTAACCGCAA 60.533 50.000 0.00 0.00 41.76 4.85
2676 2909 0.947180 GAGGAAACACGCTAACCGCA 60.947 55.000 0.00 0.00 41.76 5.69
2677 2910 1.632948 GGAGGAAACACGCTAACCGC 61.633 60.000 0.00 0.00 41.76 5.68
2678 2911 0.037605 AGGAGGAAACACGCTAACCG 60.038 55.000 0.00 0.00 44.21 4.44
2679 2912 1.270678 ACAGGAGGAAACACGCTAACC 60.271 52.381 0.00 0.00 0.00 2.85
2680 2913 2.165319 ACAGGAGGAAACACGCTAAC 57.835 50.000 0.00 0.00 0.00 2.34
2681 2914 2.353406 GCTACAGGAGGAAACACGCTAA 60.353 50.000 0.00 0.00 0.00 3.09
2682 2915 1.203994 GCTACAGGAGGAAACACGCTA 59.796 52.381 0.00 0.00 0.00 4.26
2683 2916 0.037232 GCTACAGGAGGAAACACGCT 60.037 55.000 0.00 0.00 0.00 5.07
2684 2917 1.352156 CGCTACAGGAGGAAACACGC 61.352 60.000 0.00 0.00 0.00 5.34
2685 2918 0.242825 TCGCTACAGGAGGAAACACG 59.757 55.000 0.00 0.00 0.00 4.49
2686 2919 1.997669 CTCGCTACAGGAGGAAACAC 58.002 55.000 0.00 0.00 0.00 3.32
2687 2920 0.246635 GCTCGCTACAGGAGGAAACA 59.753 55.000 0.00 0.00 32.10 2.83
2688 2921 0.802607 CGCTCGCTACAGGAGGAAAC 60.803 60.000 0.00 0.00 32.10 2.78
2689 2922 1.511305 CGCTCGCTACAGGAGGAAA 59.489 57.895 0.00 0.00 32.10 3.13
2690 2923 2.415608 CCGCTCGCTACAGGAGGAA 61.416 63.158 0.00 0.00 32.10 3.36
2691 2924 2.829003 CCGCTCGCTACAGGAGGA 60.829 66.667 0.00 0.00 32.10 3.71
2692 2925 4.577246 GCCGCTCGCTACAGGAGG 62.577 72.222 0.00 0.00 32.10 4.30
2693 2926 3.144120 ATGCCGCTCGCTACAGGAG 62.144 63.158 0.00 0.00 38.78 3.69
2694 2927 3.147595 ATGCCGCTCGCTACAGGA 61.148 61.111 0.00 0.00 38.78 3.86
2695 2928 2.963854 CATGCCGCTCGCTACAGG 60.964 66.667 0.00 0.00 38.78 4.00
2696 2929 1.361668 AAACATGCCGCTCGCTACAG 61.362 55.000 0.00 0.00 38.78 2.74
2697 2930 1.375396 AAACATGCCGCTCGCTACA 60.375 52.632 0.00 0.00 38.78 2.74
2698 2931 1.060937 CAAACATGCCGCTCGCTAC 59.939 57.895 0.00 0.00 38.78 3.58
2699 2932 2.749865 GCAAACATGCCGCTCGCTA 61.750 57.895 0.00 0.00 38.78 4.26
2700 2933 4.107051 GCAAACATGCCGCTCGCT 62.107 61.111 0.00 0.00 38.78 4.93
2701 2934 4.107051 AGCAAACATGCCGCTCGC 62.107 61.111 0.00 0.00 34.90 5.03
2702 2935 1.985447 ATCAGCAAACATGCCGCTCG 61.985 55.000 1.38 0.00 32.48 5.03
2703 2936 1.016627 TATCAGCAAACATGCCGCTC 58.983 50.000 1.38 0.00 32.48 5.03
2704 2937 0.734889 GTATCAGCAAACATGCCGCT 59.265 50.000 0.00 0.00 36.10 5.52
2705 2938 0.451383 TGTATCAGCAAACATGCCGC 59.549 50.000 0.00 0.00 34.90 6.53
2706 2939 3.365832 GAATGTATCAGCAAACATGCCG 58.634 45.455 0.00 0.00 36.47 5.69
2707 2940 3.709987 GGAATGTATCAGCAAACATGCC 58.290 45.455 0.00 0.00 43.09 4.40
2708 2941 4.644103 AGGAATGTATCAGCAAACATGC 57.356 40.909 0.00 0.00 36.47 4.06
2709 2942 7.268199 ACATAGGAATGTATCAGCAAACATG 57.732 36.000 0.00 0.00 44.66 3.21
2710 2943 7.886629 AACATAGGAATGTATCAGCAAACAT 57.113 32.000 0.00 0.00 45.79 2.71
2711 2944 7.701539 AAACATAGGAATGTATCAGCAAACA 57.298 32.000 0.00 0.00 45.79 2.83
2712 2945 7.850982 CGTAAACATAGGAATGTATCAGCAAAC 59.149 37.037 0.00 0.00 45.79 2.93
2713 2946 7.551262 ACGTAAACATAGGAATGTATCAGCAAA 59.449 33.333 0.00 0.00 45.79 3.68
2714 2947 7.045416 ACGTAAACATAGGAATGTATCAGCAA 58.955 34.615 0.00 0.00 45.79 3.91
2715 2948 6.578944 ACGTAAACATAGGAATGTATCAGCA 58.421 36.000 0.00 0.00 45.79 4.41
2716 2949 7.478520 AACGTAAACATAGGAATGTATCAGC 57.521 36.000 0.00 0.00 45.79 4.26
2723 2956 8.425491 CGAGCTAATAACGTAAACATAGGAATG 58.575 37.037 0.00 0.00 39.17 2.67
2724 2957 7.115947 GCGAGCTAATAACGTAAACATAGGAAT 59.884 37.037 0.00 0.00 0.00 3.01
2725 2958 6.418819 GCGAGCTAATAACGTAAACATAGGAA 59.581 38.462 0.00 0.00 0.00 3.36
2726 2959 5.916883 GCGAGCTAATAACGTAAACATAGGA 59.083 40.000 0.00 0.00 0.00 2.94
2727 2960 5.688621 TGCGAGCTAATAACGTAAACATAGG 59.311 40.000 0.00 0.00 0.00 2.57
2728 2961 6.742999 TGCGAGCTAATAACGTAAACATAG 57.257 37.500 0.00 0.00 0.00 2.23
2729 2962 7.143340 AGATGCGAGCTAATAACGTAAACATA 58.857 34.615 0.00 0.00 0.00 2.29
2730 2963 5.983720 AGATGCGAGCTAATAACGTAAACAT 59.016 36.000 0.00 0.00 0.00 2.71
2731 2964 5.345702 AGATGCGAGCTAATAACGTAAACA 58.654 37.500 0.00 0.00 0.00 2.83
2732 2965 5.885020 AGATGCGAGCTAATAACGTAAAC 57.115 39.130 0.00 0.00 0.00 2.01
2733 2966 6.897259 AAAGATGCGAGCTAATAACGTAAA 57.103 33.333 0.00 0.00 0.00 2.01
2734 2967 7.650504 ACATAAAGATGCGAGCTAATAACGTAA 59.349 33.333 0.00 0.00 36.43 3.18
2735 2968 7.114388 CACATAAAGATGCGAGCTAATAACGTA 59.886 37.037 0.00 0.00 36.43 3.57
2736 2969 5.983720 ACATAAAGATGCGAGCTAATAACGT 59.016 36.000 0.00 0.00 36.43 3.99
2737 2970 6.292129 CACATAAAGATGCGAGCTAATAACG 58.708 40.000 0.00 0.00 36.43 3.18
2738 2971 6.202954 ACCACATAAAGATGCGAGCTAATAAC 59.797 38.462 0.00 0.00 36.43 1.89
2739 2972 6.288294 ACCACATAAAGATGCGAGCTAATAA 58.712 36.000 0.00 0.00 36.43 1.40
2740 2973 5.853936 ACCACATAAAGATGCGAGCTAATA 58.146 37.500 0.00 0.00 36.43 0.98
2741 2974 4.708177 ACCACATAAAGATGCGAGCTAAT 58.292 39.130 0.00 0.00 36.43 1.73
2742 2975 4.137116 ACCACATAAAGATGCGAGCTAA 57.863 40.909 0.00 0.00 36.43 3.09
2743 2976 3.819564 ACCACATAAAGATGCGAGCTA 57.180 42.857 0.00 0.00 36.43 3.32
2744 2977 2.698855 ACCACATAAAGATGCGAGCT 57.301 45.000 0.00 0.00 36.43 4.09
2745 2978 3.458189 AGTACCACATAAAGATGCGAGC 58.542 45.455 0.00 0.00 36.43 5.03
2746 2979 4.051922 GGAGTACCACATAAAGATGCGAG 58.948 47.826 0.00 0.00 36.43 5.03
2747 2980 3.181469 GGGAGTACCACATAAAGATGCGA 60.181 47.826 0.00 0.00 39.85 5.10
2748 2981 3.131396 GGGAGTACCACATAAAGATGCG 58.869 50.000 0.00 0.00 39.85 4.73
2749 2982 4.423625 AGGGAGTACCACATAAAGATGC 57.576 45.455 0.00 0.00 43.89 3.91
2750 2983 6.180472 ACAAAGGGAGTACCACATAAAGATG 58.820 40.000 0.00 0.00 43.89 2.90
2751 2984 6.388619 ACAAAGGGAGTACCACATAAAGAT 57.611 37.500 0.00 0.00 43.89 2.40
2752 2985 5.836024 ACAAAGGGAGTACCACATAAAGA 57.164 39.130 0.00 0.00 43.89 2.52
2753 2986 5.414765 GGAACAAAGGGAGTACCACATAAAG 59.585 44.000 0.00 0.00 43.89 1.85
2754 2987 5.073965 AGGAACAAAGGGAGTACCACATAAA 59.926 40.000 0.00 0.00 43.89 1.40
2755 2988 4.600111 AGGAACAAAGGGAGTACCACATAA 59.400 41.667 0.00 0.00 43.89 1.90
2756 2989 4.172807 AGGAACAAAGGGAGTACCACATA 58.827 43.478 0.00 0.00 43.89 2.29
2757 2990 2.986728 AGGAACAAAGGGAGTACCACAT 59.013 45.455 0.00 0.00 43.89 3.21
2758 2991 2.414612 AGGAACAAAGGGAGTACCACA 58.585 47.619 0.00 0.00 43.89 4.17
2759 2992 4.628963 TTAGGAACAAAGGGAGTACCAC 57.371 45.455 0.00 0.00 43.89 4.16
2760 2993 5.853572 ATTTAGGAACAAAGGGAGTACCA 57.146 39.130 0.00 0.00 43.89 3.25
2761 2994 6.955364 ACTATTTAGGAACAAAGGGAGTACC 58.045 40.000 0.00 0.00 40.67 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.