Multiple sequence alignment - TraesCS6D01G400700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G400700 chr6D 100.000 4676 0 0 1 4676 470297952 470293277 0.000000e+00 8636.0
1 TraesCS6D01G400700 chr6D 93.147 2758 148 10 1282 4035 470098163 470100883 0.000000e+00 4008.0
2 TraesCS6D01G400700 chr6D 96.192 1103 42 0 1 1103 470096749 470097851 0.000000e+00 1805.0
3 TraesCS6D01G400700 chr6D 93.548 186 3 2 1103 1279 470097935 470098120 7.710000e-68 268.0
4 TraesCS6D01G400700 chr6D 91.813 171 13 1 3733 3903 470093368 470093199 2.170000e-58 237.0
5 TraesCS6D01G400700 chr6D 87.805 205 20 2 4419 4622 470101306 470101506 7.820000e-58 235.0
6 TraesCS6D01G400700 chr6A 95.167 2938 109 14 1103 4035 614961617 614964526 0.000000e+00 4608.0
7 TraesCS6D01G400700 chr6A 96.564 1106 34 2 1 1103 614960463 614961567 0.000000e+00 1829.0
8 TraesCS6D01G400700 chr6A 78.150 2238 416 51 1433 3620 27008658 27006444 0.000000e+00 1356.0
9 TraesCS6D01G400700 chr6A 78.265 2167 407 47 1433 3558 27106479 27104336 0.000000e+00 1334.0
10 TraesCS6D01G400700 chr6A 77.808 1104 202 30 1 1086 27108766 27107688 3.940000e-180 641.0
11 TraesCS6D01G400700 chr6A 97.297 37 1 0 4373 4409 614964641 614964677 3.910000e-06 63.9
12 TraesCS6D01G400700 chrUn 78.377 2169 405 44 1433 3557 96156377 96154229 0.000000e+00 1349.0
13 TraesCS6D01G400700 chrUn 78.147 2169 404 51 1428 3549 95818117 95820262 0.000000e+00 1315.0
14 TraesCS6D01G400700 chrUn 76.492 2178 441 55 1420 3550 96217867 96215714 0.000000e+00 1120.0
15 TraesCS6D01G400700 chrUn 78.030 1056 188 27 1 1037 96232188 96231158 3.970000e-175 625.0
16 TraesCS6D01G400700 chrUn 77.264 1060 197 26 1 1041 96300427 96299393 2.420000e-162 582.0
17 TraesCS6D01G400700 chrUn 76.621 1095 211 28 1 1076 96220111 96219043 3.160000e-156 562.0
18 TraesCS6D01G400700 chrUn 76.347 1095 210 34 1 1074 96160190 96159124 4.120000e-150 542.0
19 TraesCS6D01G400700 chrUn 76.907 983 178 36 114 1074 96289192 96288237 3.230000e-141 512.0
20 TraesCS6D01G400700 chrUn 80.053 376 67 5 1 372 50646635 50646264 5.960000e-69 272.0
21 TraesCS6D01G400700 chr6B 77.941 2176 390 61 1430 3558 46786347 46788479 0.000000e+00 1277.0
22 TraesCS6D01G400700 chr6B 76.814 2191 427 62 1412 3550 47092718 47090557 0.000000e+00 1157.0
23 TraesCS6D01G400700 chr6B 77.393 1097 199 36 1 1076 47096284 47095216 1.440000e-169 606.0
24 TraesCS6D01G400700 chr6B 76.113 1101 209 36 1 1076 46928672 46927601 1.150000e-145 527.0
25 TraesCS6D01G400700 chr6B 95.390 282 9 2 1 281 716432491 716432213 3.320000e-121 446.0
26 TraesCS6D01G400700 chr6B 80.698 487 86 7 1428 1910 47233958 47233476 5.710000e-99 372.0
27 TraesCS6D01G400700 chr4A 83.467 375 57 5 28 398 603044013 603044386 1.250000e-90 344.0
28 TraesCS6D01G400700 chr4B 81.963 377 65 3 1 374 3311440 3311064 2.720000e-82 316.0
29 TraesCS6D01G400700 chr7D 79.521 376 69 5 1 372 19925228 19925599 1.290000e-65 261.0
30 TraesCS6D01G400700 chr7D 78.552 373 72 5 1 369 19815828 19816196 6.050000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G400700 chr6D 470293277 470297952 4675 True 8636.000000 8636 100.000000 1 4676 1 chr6D.!!$R2 4675
1 TraesCS6D01G400700 chr6D 470096749 470101506 4757 False 1579.000000 4008 92.673000 1 4622 4 chr6D.!!$F1 4621
2 TraesCS6D01G400700 chr6A 614960463 614964677 4214 False 2166.966667 4608 96.342667 1 4409 3 chr6A.!!$F1 4408
3 TraesCS6D01G400700 chr6A 27006444 27008658 2214 True 1356.000000 1356 78.150000 1433 3620 1 chr6A.!!$R1 2187
4 TraesCS6D01G400700 chr6A 27104336 27108766 4430 True 987.500000 1334 78.036500 1 3558 2 chr6A.!!$R2 3557
5 TraesCS6D01G400700 chrUn 95818117 95820262 2145 False 1315.000000 1315 78.147000 1428 3549 1 chrUn.!!$F1 2121
6 TraesCS6D01G400700 chrUn 96154229 96160190 5961 True 945.500000 1349 77.362000 1 3557 2 chrUn.!!$R5 3556
7 TraesCS6D01G400700 chrUn 96215714 96220111 4397 True 841.000000 1120 76.556500 1 3550 2 chrUn.!!$R6 3549
8 TraesCS6D01G400700 chrUn 96231158 96232188 1030 True 625.000000 625 78.030000 1 1037 1 chrUn.!!$R2 1036
9 TraesCS6D01G400700 chrUn 96299393 96300427 1034 True 582.000000 582 77.264000 1 1041 1 chrUn.!!$R4 1040
10 TraesCS6D01G400700 chrUn 96288237 96289192 955 True 512.000000 512 76.907000 114 1074 1 chrUn.!!$R3 960
11 TraesCS6D01G400700 chr6B 46786347 46788479 2132 False 1277.000000 1277 77.941000 1430 3558 1 chr6B.!!$F1 2128
12 TraesCS6D01G400700 chr6B 47090557 47096284 5727 True 881.500000 1157 77.103500 1 3550 2 chr6B.!!$R4 3549
13 TraesCS6D01G400700 chr6B 46927601 46928672 1071 True 527.000000 527 76.113000 1 1076 1 chr6B.!!$R1 1075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 1.000521 CCAGCTCAAGGCCATGGAA 60.001 57.895 18.40 0.00 43.05 3.53 F
819 838 1.203052 CAATACTTGGTGCTGCCTTGG 59.797 52.381 0.00 0.00 38.35 3.61 F
1104 1153 3.737559 AACTCCCTATTTGGACATGCA 57.262 42.857 0.00 0.00 38.35 3.96 F
1851 6110 2.364002 GGAGCTGATACTGAGGAACCTC 59.636 54.545 13.32 13.32 43.01 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1166 1434 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.0 0.00 3.67 R
1851 6110 5.882557 AGACCATTTTGTAACTGGCTCTATG 59.117 40.000 0.00 0.0 33.12 2.23 R
2975 7258 3.506067 CACCATTCCAGTTAACTCCAACC 59.494 47.826 4.77 0.0 0.00 3.77 R
3833 8126 0.320421 ACGCGACTGCCAACACTAAT 60.320 50.000 15.93 0.0 38.08 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 252 1.000521 CCAGCTCAAGGCCATGGAA 60.001 57.895 18.40 0.00 43.05 3.53
458 472 3.579534 TCCTCTCGCTTATCTACCAGT 57.420 47.619 0.00 0.00 0.00 4.00
819 838 1.203052 CAATACTTGGTGCTGCCTTGG 59.797 52.381 0.00 0.00 38.35 3.61
1013 1035 6.762661 TCGACAAATTAGATGATGAAGATGCA 59.237 34.615 0.00 0.00 0.00 3.96
1028 1050 4.160642 AGATGCATGGTCATTGCTTAGA 57.839 40.909 2.46 0.00 0.00 2.10
1103 1152 4.036852 GCTTAACTCCCTATTTGGACATGC 59.963 45.833 0.00 0.00 38.35 4.06
1104 1153 3.737559 AACTCCCTATTTGGACATGCA 57.262 42.857 0.00 0.00 38.35 3.96
1105 1154 3.959495 ACTCCCTATTTGGACATGCAT 57.041 42.857 0.00 0.00 38.35 3.96
1166 1434 3.956233 GCATACAACATATGCACACCAG 58.044 45.455 12.82 0.00 46.89 4.00
1279 1555 7.296628 TGGCAATTTAATTTCAGTACCTTGT 57.703 32.000 0.00 0.00 0.00 3.16
1442 5701 5.041951 TCTATTGGTTTAAACTGCTTGCG 57.958 39.130 17.50 2.22 0.00 4.85
1577 5836 4.750098 ACTGTTGTGTCAGAAGGATAAACG 59.250 41.667 0.65 0.00 38.63 3.60
1851 6110 2.364002 GGAGCTGATACTGAGGAACCTC 59.636 54.545 13.32 13.32 43.01 3.85
2274 6533 5.783111 AGTTTGCCAGATAACATTGGAAAC 58.217 37.500 0.00 0.00 36.55 2.78
2975 7258 1.281899 GCGTTTCCGAGATTGAGGAG 58.718 55.000 0.00 0.00 37.88 3.69
3027 7310 2.284921 TGGGAGTGGGAGGAGCAG 60.285 66.667 0.00 0.00 0.00 4.24
3223 7506 1.736586 CCCGACTTGGAGAGGATCG 59.263 63.158 0.00 0.00 42.00 3.69
3416 7699 0.613260 TTGCTCACTTCCATAGCCGT 59.387 50.000 0.00 0.00 35.33 5.68
3429 7712 0.616395 TAGCCGTGGGACAATCTGGA 60.616 55.000 0.00 0.00 44.16 3.86
3452 7735 0.951040 GAGTGGGACAAGTTCAGCCG 60.951 60.000 0.00 0.00 44.16 5.52
3494 7777 3.342377 TGCACCCGATGAGAACAATAA 57.658 42.857 0.00 0.00 0.00 1.40
3584 7870 3.435327 TCTGCAGGTAAATTAGCACAACG 59.565 43.478 15.13 0.00 32.87 4.10
3590 7876 2.961522 AAATTAGCACAACGGTGTCG 57.038 45.000 1.16 0.09 46.95 4.35
3620 7906 4.898829 TGTTGTTCCACTCTGTTCATTG 57.101 40.909 0.00 0.00 0.00 2.82
3675 7961 4.922206 AGGACCAGCAAGTAATTTCATGA 58.078 39.130 0.00 0.00 0.00 3.07
3676 7962 4.946157 AGGACCAGCAAGTAATTTCATGAG 59.054 41.667 0.00 0.00 0.00 2.90
3677 7963 4.702131 GGACCAGCAAGTAATTTCATGAGT 59.298 41.667 0.00 0.00 0.00 3.41
3678 7964 5.163713 GGACCAGCAAGTAATTTCATGAGTC 60.164 44.000 0.00 0.00 0.00 3.36
3679 7965 5.564550 ACCAGCAAGTAATTTCATGAGTCT 58.435 37.500 0.00 0.00 0.00 3.24
3680 7966 5.645497 ACCAGCAAGTAATTTCATGAGTCTC 59.355 40.000 0.00 0.00 0.00 3.36
3681 7967 5.879223 CCAGCAAGTAATTTCATGAGTCTCT 59.121 40.000 0.65 0.00 0.00 3.10
3777 8070 1.689575 GGTGCATGGAGAGAGGTAGGA 60.690 57.143 0.00 0.00 0.00 2.94
3781 8074 2.298729 GCATGGAGAGAGGTAGGATCAC 59.701 54.545 0.00 0.00 0.00 3.06
3798 8091 6.815089 AGGATCACTATTCAGCTTCTAACTG 58.185 40.000 0.00 0.00 36.44 3.16
3801 8094 7.384660 GGATCACTATTCAGCTTCTAACTGATG 59.615 40.741 0.00 0.00 43.40 3.07
3833 8126 4.068599 TGCTTCCGTTGATGTATTTCACA 58.931 39.130 0.00 0.00 42.69 3.58
3848 8141 4.829064 TTTCACATTAGTGTTGGCAGTC 57.171 40.909 0.00 0.00 46.01 3.51
3866 8159 1.060698 GTCGCGTGCCAATTTACTCTC 59.939 52.381 5.77 0.00 0.00 3.20
3878 8171 6.520272 CCAATTTACTCTCTAGTCCTCATGG 58.480 44.000 0.00 0.00 37.15 3.66
3889 8182 0.245539 TCCTCATGGTTTCGACGACC 59.754 55.000 9.67 9.67 37.69 4.79
3997 8290 0.401356 TGATGCAGGCAGGTTGAAGA 59.599 50.000 0.00 0.00 0.00 2.87
4035 8330 3.561313 GGCCTTAACCATCTTCACCTTGA 60.561 47.826 0.00 0.00 0.00 3.02
4038 8333 5.500234 CCTTAACCATCTTCACCTTGATGA 58.500 41.667 0.00 0.00 41.69 2.92
4039 8334 5.945784 CCTTAACCATCTTCACCTTGATGAA 59.054 40.000 0.00 0.00 41.69 2.57
4051 8346 2.680577 CTTGATGAAGGCAAGGCAAAC 58.319 47.619 0.00 0.00 39.18 2.93
4072 8396 6.414408 AACAAGAGAAGCTCATCATTTACG 57.586 37.500 0.00 0.00 32.06 3.18
4073 8397 4.331168 ACAAGAGAAGCTCATCATTTACGC 59.669 41.667 0.00 0.00 32.06 4.42
4080 8404 4.256920 AGCTCATCATTTACGCAACTCTT 58.743 39.130 0.00 0.00 0.00 2.85
4082 8406 4.780324 GCTCATCATTTACGCAACTCTTCG 60.780 45.833 0.00 0.00 0.00 3.79
4090 8414 0.946221 CGCAACTCTTCGGCAAGACT 60.946 55.000 0.00 0.00 34.71 3.24
4093 8417 2.610727 GCAACTCTTCGGCAAGACTAGT 60.611 50.000 0.00 0.00 34.71 2.57
4094 8418 3.367087 GCAACTCTTCGGCAAGACTAGTA 60.367 47.826 0.00 0.00 34.71 1.82
4095 8419 4.678309 GCAACTCTTCGGCAAGACTAGTAT 60.678 45.833 0.00 0.00 34.71 2.12
4096 8420 4.904253 ACTCTTCGGCAAGACTAGTATC 57.096 45.455 0.00 0.00 34.71 2.24
4097 8421 4.270834 ACTCTTCGGCAAGACTAGTATCA 58.729 43.478 0.00 0.00 34.71 2.15
4098 8422 4.890581 ACTCTTCGGCAAGACTAGTATCAT 59.109 41.667 0.00 0.00 34.71 2.45
4099 8423 5.009210 ACTCTTCGGCAAGACTAGTATCATC 59.991 44.000 0.00 0.00 34.71 2.92
4100 8424 4.278669 TCTTCGGCAAGACTAGTATCATCC 59.721 45.833 0.00 0.00 33.38 3.51
4101 8425 2.552743 TCGGCAAGACTAGTATCATCCG 59.447 50.000 14.85 14.85 36.06 4.18
4102 8426 2.552743 CGGCAAGACTAGTATCATCCGA 59.447 50.000 15.55 0.00 36.77 4.55
4103 8427 3.191581 CGGCAAGACTAGTATCATCCGAT 59.808 47.826 15.55 0.00 36.77 4.18
4104 8428 4.321304 CGGCAAGACTAGTATCATCCGATT 60.321 45.833 15.55 0.00 36.77 3.34
4105 8429 5.542779 GGCAAGACTAGTATCATCCGATTT 58.457 41.667 0.00 0.00 32.73 2.17
4106 8430 5.406780 GGCAAGACTAGTATCATCCGATTTG 59.593 44.000 0.00 0.00 32.73 2.32
4107 8431 5.107298 GCAAGACTAGTATCATCCGATTTGC 60.107 44.000 0.00 0.00 31.76 3.68
4108 8432 4.799678 AGACTAGTATCATCCGATTTGCG 58.200 43.478 0.00 0.00 40.47 4.85
4109 8433 4.519350 AGACTAGTATCATCCGATTTGCGA 59.481 41.667 0.00 0.00 44.57 5.10
4110 8434 4.547532 ACTAGTATCATCCGATTTGCGAC 58.452 43.478 0.00 0.00 44.57 5.19
4111 8435 2.394708 AGTATCATCCGATTTGCGACG 58.605 47.619 0.00 0.00 44.57 5.12
4112 8436 2.034179 AGTATCATCCGATTTGCGACGA 59.966 45.455 0.00 0.00 44.57 4.20
4113 8437 2.154854 ATCATCCGATTTGCGACGAT 57.845 45.000 0.00 0.00 44.57 3.73
4114 8438 1.208259 TCATCCGATTTGCGACGATG 58.792 50.000 0.00 0.00 44.57 3.84
4115 8439 1.202359 TCATCCGATTTGCGACGATGA 60.202 47.619 0.00 0.00 41.86 2.92
4116 8440 1.794701 CATCCGATTTGCGACGATGAT 59.205 47.619 0.00 0.00 44.57 2.45
4117 8441 1.208259 TCCGATTTGCGACGATGATG 58.792 50.000 0.00 0.00 44.57 3.07
4118 8442 0.233074 CCGATTTGCGACGATGATGG 59.767 55.000 0.00 0.00 44.57 3.51
4119 8443 0.383491 CGATTTGCGACGATGATGGC 60.383 55.000 0.00 0.00 44.57 4.40
4120 8444 0.940126 GATTTGCGACGATGATGGCT 59.060 50.000 0.00 0.00 0.00 4.75
4121 8445 0.659427 ATTTGCGACGATGATGGCTG 59.341 50.000 0.00 0.00 0.00 4.85
4122 8446 0.673333 TTTGCGACGATGATGGCTGT 60.673 50.000 0.00 0.00 0.00 4.40
4123 8447 0.174617 TTGCGACGATGATGGCTGTA 59.825 50.000 0.00 0.00 0.00 2.74
4124 8448 0.174617 TGCGACGATGATGGCTGTAA 59.825 50.000 0.00 0.00 0.00 2.41
4125 8449 0.577269 GCGACGATGATGGCTGTAAC 59.423 55.000 0.00 0.00 0.00 2.50
4126 8450 0.846401 CGACGATGATGGCTGTAACG 59.154 55.000 0.00 0.00 0.00 3.18
4127 8451 1.797713 CGACGATGATGGCTGTAACGT 60.798 52.381 0.00 0.00 35.31 3.99
4128 8452 1.588404 GACGATGATGGCTGTAACGTG 59.412 52.381 0.00 0.00 32.88 4.49
4129 8453 1.203758 ACGATGATGGCTGTAACGTGA 59.796 47.619 0.00 0.00 0.00 4.35
4130 8454 2.267426 CGATGATGGCTGTAACGTGAA 58.733 47.619 0.00 0.00 0.00 3.18
4143 8467 6.665474 TGTAACGTGAATACTTGTGTGTTT 57.335 33.333 0.00 0.00 0.00 2.83
4144 8468 6.479436 TGTAACGTGAATACTTGTGTGTTTG 58.521 36.000 0.00 0.00 0.00 2.93
4145 8469 5.804692 AACGTGAATACTTGTGTGTTTGA 57.195 34.783 0.00 0.00 0.00 2.69
4146 8470 6.371809 AACGTGAATACTTGTGTGTTTGAT 57.628 33.333 0.00 0.00 0.00 2.57
4147 8471 5.747565 ACGTGAATACTTGTGTGTTTGATG 58.252 37.500 0.00 0.00 0.00 3.07
4148 8472 4.612614 CGTGAATACTTGTGTGTTTGATGC 59.387 41.667 0.00 0.00 0.00 3.91
4150 8474 5.976534 GTGAATACTTGTGTGTTTGATGCAA 59.023 36.000 0.00 0.00 0.00 4.08
4151 8475 5.976534 TGAATACTTGTGTGTTTGATGCAAC 59.023 36.000 0.00 0.00 0.00 4.17
4152 8476 5.772825 ATACTTGTGTGTTTGATGCAACT 57.227 34.783 0.00 0.00 0.00 3.16
4153 8477 4.454728 ACTTGTGTGTTTGATGCAACTT 57.545 36.364 0.00 0.00 0.00 2.66
4154 8478 4.819769 ACTTGTGTGTTTGATGCAACTTT 58.180 34.783 0.00 0.00 0.00 2.66
4156 8480 5.804979 ACTTGTGTGTTTGATGCAACTTTAC 59.195 36.000 0.00 0.00 0.00 2.01
4157 8481 4.677584 TGTGTGTTTGATGCAACTTTACC 58.322 39.130 0.00 0.00 0.00 2.85
4158 8482 3.728718 GTGTGTTTGATGCAACTTTACCG 59.271 43.478 0.00 0.00 0.00 4.02
4159 8483 2.724174 GTGTTTGATGCAACTTTACCGC 59.276 45.455 0.00 0.00 0.00 5.68
4160 8484 2.621055 TGTTTGATGCAACTTTACCGCT 59.379 40.909 0.00 0.00 0.00 5.52
4161 8485 3.067461 TGTTTGATGCAACTTTACCGCTT 59.933 39.130 0.00 0.00 0.00 4.68
4162 8486 2.987413 TGATGCAACTTTACCGCTTG 57.013 45.000 0.00 0.00 0.00 4.01
4163 8487 1.539388 TGATGCAACTTTACCGCTTGG 59.461 47.619 0.00 0.00 39.35 3.61
4165 8489 1.394618 TGCAACTTTACCGCTTGGTT 58.605 45.000 0.00 0.00 46.51 3.67
4166 8490 1.751924 TGCAACTTTACCGCTTGGTTT 59.248 42.857 0.00 0.00 46.51 3.27
4167 8491 2.124122 GCAACTTTACCGCTTGGTTTG 58.876 47.619 0.00 0.00 46.51 2.93
4168 8492 2.480587 GCAACTTTACCGCTTGGTTTGT 60.481 45.455 0.00 0.00 46.51 2.83
4169 8493 3.776340 CAACTTTACCGCTTGGTTTGTT 58.224 40.909 0.00 0.00 46.51 2.83
4170 8494 4.177783 CAACTTTACCGCTTGGTTTGTTT 58.822 39.130 0.00 0.00 46.51 2.83
4171 8495 4.459390 ACTTTACCGCTTGGTTTGTTTT 57.541 36.364 0.00 0.00 46.51 2.43
4172 8496 4.823157 ACTTTACCGCTTGGTTTGTTTTT 58.177 34.783 0.00 0.00 46.51 1.94
4173 8497 4.865925 ACTTTACCGCTTGGTTTGTTTTTC 59.134 37.500 0.00 0.00 46.51 2.29
4174 8498 4.451629 TTACCGCTTGGTTTGTTTTTCA 57.548 36.364 0.00 0.00 46.51 2.69
4175 8499 2.612604 ACCGCTTGGTTTGTTTTTCAC 58.387 42.857 0.00 0.00 46.51 3.18
4176 8500 2.028930 ACCGCTTGGTTTGTTTTTCACA 60.029 40.909 0.00 0.00 46.51 3.58
4177 8501 2.996621 CCGCTTGGTTTGTTTTTCACAA 59.003 40.909 0.00 0.00 44.11 3.33
4178 8502 5.038284 ACCGCTTGGTTTGTTTTTCACAAA 61.038 37.500 0.00 0.00 46.51 2.83
4187 8511 4.935885 TGTTTTTCACAAAATGCACACC 57.064 36.364 0.00 0.00 34.35 4.16
4188 8512 4.573900 TGTTTTTCACAAAATGCACACCT 58.426 34.783 0.00 0.00 34.35 4.00
4189 8513 4.999950 TGTTTTTCACAAAATGCACACCTT 59.000 33.333 0.00 0.00 34.35 3.50
4190 8514 5.121454 TGTTTTTCACAAAATGCACACCTTC 59.879 36.000 0.00 0.00 34.35 3.46
4191 8515 4.462508 TTTCACAAAATGCACACCTTCA 57.537 36.364 0.00 0.00 0.00 3.02
4192 8516 4.669206 TTCACAAAATGCACACCTTCAT 57.331 36.364 0.00 0.00 0.00 2.57
4193 8517 5.781210 TTCACAAAATGCACACCTTCATA 57.219 34.783 0.00 0.00 0.00 2.15
4194 8518 5.375417 TCACAAAATGCACACCTTCATAG 57.625 39.130 0.00 0.00 0.00 2.23
4195 8519 5.069318 TCACAAAATGCACACCTTCATAGA 58.931 37.500 0.00 0.00 0.00 1.98
4196 8520 5.048782 TCACAAAATGCACACCTTCATAGAC 60.049 40.000 0.00 0.00 0.00 2.59
4197 8521 5.048504 CACAAAATGCACACCTTCATAGACT 60.049 40.000 0.00 0.00 0.00 3.24
4198 8522 5.182001 ACAAAATGCACACCTTCATAGACTC 59.818 40.000 0.00 0.00 0.00 3.36
4199 8523 4.833478 AATGCACACCTTCATAGACTCT 57.167 40.909 0.00 0.00 0.00 3.24
4200 8524 3.876274 TGCACACCTTCATAGACTCTC 57.124 47.619 0.00 0.00 0.00 3.20
4201 8525 3.435275 TGCACACCTTCATAGACTCTCT 58.565 45.455 0.00 0.00 0.00 3.10
4202 8526 3.194329 TGCACACCTTCATAGACTCTCTG 59.806 47.826 0.00 0.00 0.00 3.35
4203 8527 3.194542 GCACACCTTCATAGACTCTCTGT 59.805 47.826 0.00 0.00 0.00 3.41
4204 8528 4.676723 GCACACCTTCATAGACTCTCTGTC 60.677 50.000 0.00 0.00 45.67 3.51
4218 8542 7.475771 GACTCTCTGTCATATCAAATGGTTC 57.524 40.000 0.00 0.00 44.73 3.62
4219 8543 7.192852 ACTCTCTGTCATATCAAATGGTTCT 57.807 36.000 0.00 0.00 0.00 3.01
4220 8544 7.046652 ACTCTCTGTCATATCAAATGGTTCTG 58.953 38.462 0.00 0.00 0.00 3.02
4221 8545 6.950842 TCTCTGTCATATCAAATGGTTCTGT 58.049 36.000 0.00 0.00 0.00 3.41
4222 8546 7.397221 TCTCTGTCATATCAAATGGTTCTGTT 58.603 34.615 0.00 0.00 0.00 3.16
4223 8547 7.884877 TCTCTGTCATATCAAATGGTTCTGTTT 59.115 33.333 0.00 0.00 0.00 2.83
4224 8548 8.044060 TCTGTCATATCAAATGGTTCTGTTTC 57.956 34.615 0.00 0.00 0.00 2.78
4225 8549 6.841119 TGTCATATCAAATGGTTCTGTTTCG 58.159 36.000 0.00 0.00 0.00 3.46
4226 8550 6.652900 TGTCATATCAAATGGTTCTGTTTCGA 59.347 34.615 0.00 0.00 0.00 3.71
4227 8551 7.336679 TGTCATATCAAATGGTTCTGTTTCGAT 59.663 33.333 0.00 0.00 0.00 3.59
4228 8552 8.826710 GTCATATCAAATGGTTCTGTTTCGATA 58.173 33.333 0.00 0.00 0.00 2.92
4229 8553 9.389755 TCATATCAAATGGTTCTGTTTCGATAA 57.610 29.630 0.00 0.00 0.00 1.75
4234 8558 8.455682 TCAAATGGTTCTGTTTCGATAATTACC 58.544 33.333 0.00 0.00 0.00 2.85
4235 8559 6.598753 ATGGTTCTGTTTCGATAATTACCG 57.401 37.500 0.00 0.00 0.00 4.02
4236 8560 4.871557 TGGTTCTGTTTCGATAATTACCGG 59.128 41.667 0.00 0.00 0.00 5.28
4237 8561 5.111293 GGTTCTGTTTCGATAATTACCGGA 58.889 41.667 9.46 0.00 0.00 5.14
4238 8562 5.233689 GGTTCTGTTTCGATAATTACCGGAG 59.766 44.000 9.46 0.00 0.00 4.63
4239 8563 5.587388 TCTGTTTCGATAATTACCGGAGT 57.413 39.130 9.46 0.00 0.00 3.85
4240 8564 5.585390 TCTGTTTCGATAATTACCGGAGTC 58.415 41.667 9.46 0.00 0.00 3.36
4241 8565 5.125900 TCTGTTTCGATAATTACCGGAGTCA 59.874 40.000 9.46 0.00 0.00 3.41
4242 8566 5.909477 TGTTTCGATAATTACCGGAGTCAT 58.091 37.500 9.46 0.00 0.00 3.06
4243 8567 6.342906 TGTTTCGATAATTACCGGAGTCATT 58.657 36.000 9.46 2.82 0.00 2.57
4244 8568 6.477688 TGTTTCGATAATTACCGGAGTCATTC 59.522 38.462 9.46 0.00 0.00 2.67
4245 8569 5.777850 TCGATAATTACCGGAGTCATTCA 57.222 39.130 9.46 0.00 0.00 2.57
4246 8570 6.151663 TCGATAATTACCGGAGTCATTCAA 57.848 37.500 9.46 0.00 0.00 2.69
4247 8571 6.575267 TCGATAATTACCGGAGTCATTCAAA 58.425 36.000 9.46 0.00 0.00 2.69
4248 8572 6.700081 TCGATAATTACCGGAGTCATTCAAAG 59.300 38.462 9.46 0.00 0.00 2.77
4249 8573 6.073765 CGATAATTACCGGAGTCATTCAAAGG 60.074 42.308 9.46 0.00 0.00 3.11
4250 8574 4.837093 ATTACCGGAGTCATTCAAAGGA 57.163 40.909 9.46 0.00 0.00 3.36
4251 8575 4.627284 TTACCGGAGTCATTCAAAGGAA 57.373 40.909 9.46 0.00 37.45 3.36
4252 8576 2.779506 ACCGGAGTCATTCAAAGGAAC 58.220 47.619 9.46 0.00 35.46 3.62
4254 8578 3.581332 ACCGGAGTCATTCAAAGGAACTA 59.419 43.478 9.46 0.00 38.49 2.24
4255 8579 4.041198 ACCGGAGTCATTCAAAGGAACTAA 59.959 41.667 9.46 0.00 38.49 2.24
4256 8580 4.631813 CCGGAGTCATTCAAAGGAACTAAG 59.368 45.833 0.00 0.00 38.49 2.18
4257 8581 4.093556 CGGAGTCATTCAAAGGAACTAAGC 59.906 45.833 0.00 0.00 38.49 3.09
4258 8582 5.003804 GGAGTCATTCAAAGGAACTAAGCA 58.996 41.667 0.00 0.00 38.49 3.91
4259 8583 5.473504 GGAGTCATTCAAAGGAACTAAGCAA 59.526 40.000 0.00 0.00 38.49 3.91
4260 8584 6.348868 GGAGTCATTCAAAGGAACTAAGCAAG 60.349 42.308 0.00 0.00 38.49 4.01
4261 8585 5.474876 AGTCATTCAAAGGAACTAAGCAAGG 59.525 40.000 0.00 0.00 38.49 3.61
4262 8586 5.473504 GTCATTCAAAGGAACTAAGCAAGGA 59.526 40.000 0.00 0.00 38.49 3.36
4263 8587 6.016276 GTCATTCAAAGGAACTAAGCAAGGAA 60.016 38.462 0.00 0.00 38.49 3.36
4264 8588 5.767816 TTCAAAGGAACTAAGCAAGGAAC 57.232 39.130 0.00 0.00 38.49 3.62
4265 8589 4.787551 TCAAAGGAACTAAGCAAGGAACA 58.212 39.130 0.00 0.00 38.49 3.18
4266 8590 4.578928 TCAAAGGAACTAAGCAAGGAACAC 59.421 41.667 0.00 0.00 38.49 3.32
4267 8591 3.857157 AGGAACTAAGCAAGGAACACA 57.143 42.857 0.00 0.00 36.02 3.72
4268 8592 4.164843 AGGAACTAAGCAAGGAACACAA 57.835 40.909 0.00 0.00 36.02 3.33
4269 8593 3.883489 AGGAACTAAGCAAGGAACACAAC 59.117 43.478 0.00 0.00 36.02 3.32
4270 8594 3.883489 GGAACTAAGCAAGGAACACAACT 59.117 43.478 0.00 0.00 0.00 3.16
4271 8595 4.338400 GGAACTAAGCAAGGAACACAACTT 59.662 41.667 0.00 0.00 0.00 2.66
4272 8596 4.900635 ACTAAGCAAGGAACACAACTTG 57.099 40.909 0.00 0.00 45.19 3.16
4273 8597 4.270008 ACTAAGCAAGGAACACAACTTGT 58.730 39.130 0.00 0.00 44.45 3.16
4288 8612 7.360575 CACAACTTGTGGTTATTCCTACTAC 57.639 40.000 13.36 0.00 44.27 2.73
4289 8613 6.932400 CACAACTTGTGGTTATTCCTACTACA 59.068 38.462 13.36 0.00 44.27 2.74
4290 8614 7.606456 CACAACTTGTGGTTATTCCTACTACAT 59.394 37.037 13.36 0.00 44.27 2.29
4291 8615 8.161425 ACAACTTGTGGTTATTCCTACTACATT 58.839 33.333 0.00 0.00 36.95 2.71
4292 8616 9.661563 CAACTTGTGGTTATTCCTACTACATTA 57.338 33.333 0.00 0.00 36.95 1.90
4293 8617 9.886132 AACTTGTGGTTATTCCTACTACATTAG 57.114 33.333 0.00 0.00 36.95 1.73
4294 8618 9.043548 ACTTGTGGTTATTCCTACTACATTAGT 57.956 33.333 0.00 0.00 36.95 2.24
4297 8621 9.478238 TGTGGTTATTCCTACTACATTAGTACA 57.522 33.333 0.00 0.00 40.14 2.90
4298 8622 9.962783 GTGGTTATTCCTACTACATTAGTACAG 57.037 37.037 0.00 0.00 40.14 2.74
4299 8623 9.705103 TGGTTATTCCTACTACATTAGTACAGT 57.295 33.333 0.00 0.00 40.14 3.55
4326 8650 8.706322 ATACTTTTCAACAACTTATTCCTGGT 57.294 30.769 0.00 0.00 0.00 4.00
4327 8651 6.805713 ACTTTTCAACAACTTATTCCTGGTG 58.194 36.000 0.00 0.00 0.00 4.17
4328 8652 4.846779 TTCAACAACTTATTCCTGGTGC 57.153 40.909 0.00 0.00 0.00 5.01
4329 8653 3.153919 TCAACAACTTATTCCTGGTGCC 58.846 45.455 0.00 0.00 0.00 5.01
4330 8654 2.890311 CAACAACTTATTCCTGGTGCCA 59.110 45.455 0.00 0.00 0.00 4.92
4331 8655 2.795329 ACAACTTATTCCTGGTGCCAG 58.205 47.619 11.13 11.13 43.26 4.85
4332 8656 1.474077 CAACTTATTCCTGGTGCCAGC 59.526 52.381 12.54 0.00 42.35 4.85
4333 8657 0.698238 ACTTATTCCTGGTGCCAGCA 59.302 50.000 12.54 0.00 42.35 4.41
4334 8658 1.340405 ACTTATTCCTGGTGCCAGCAG 60.340 52.381 16.81 16.81 42.96 4.24
4335 8659 0.698238 TTATTCCTGGTGCCAGCAGT 59.302 50.000 21.35 6.92 41.84 4.40
4336 8660 1.578897 TATTCCTGGTGCCAGCAGTA 58.421 50.000 21.35 10.28 41.84 2.74
4337 8661 0.254178 ATTCCTGGTGCCAGCAGTAG 59.746 55.000 21.35 8.31 41.84 2.57
4338 8662 0.835971 TTCCTGGTGCCAGCAGTAGA 60.836 55.000 21.35 10.48 41.84 2.59
4339 8663 0.835971 TCCTGGTGCCAGCAGTAGAA 60.836 55.000 21.35 2.74 41.84 2.10
4340 8664 0.254178 CCTGGTGCCAGCAGTAGAAT 59.746 55.000 21.35 0.00 41.84 2.40
4341 8665 1.340405 CCTGGTGCCAGCAGTAGAATT 60.340 52.381 21.35 0.00 41.84 2.17
4342 8666 2.440409 CTGGTGCCAGCAGTAGAATTT 58.560 47.619 15.60 0.00 38.80 1.82
4343 8667 2.161855 TGGTGCCAGCAGTAGAATTTG 58.838 47.619 0.00 0.00 0.00 2.32
4344 8668 2.224744 TGGTGCCAGCAGTAGAATTTGA 60.225 45.455 0.00 0.00 0.00 2.69
4345 8669 3.019564 GGTGCCAGCAGTAGAATTTGAT 58.980 45.455 0.00 0.00 0.00 2.57
4346 8670 4.199310 GGTGCCAGCAGTAGAATTTGATA 58.801 43.478 0.00 0.00 0.00 2.15
4347 8671 4.274459 GGTGCCAGCAGTAGAATTTGATAG 59.726 45.833 0.00 0.00 0.00 2.08
4348 8672 5.118990 GTGCCAGCAGTAGAATTTGATAGA 58.881 41.667 0.00 0.00 0.00 1.98
4349 8673 5.586243 GTGCCAGCAGTAGAATTTGATAGAA 59.414 40.000 0.00 0.00 0.00 2.10
4350 8674 6.094048 GTGCCAGCAGTAGAATTTGATAGAAA 59.906 38.462 0.00 0.00 0.00 2.52
4351 8675 6.094048 TGCCAGCAGTAGAATTTGATAGAAAC 59.906 38.462 0.00 0.00 0.00 2.78
4352 8676 6.317391 GCCAGCAGTAGAATTTGATAGAAACT 59.683 38.462 0.00 0.00 0.00 2.66
4353 8677 7.495934 GCCAGCAGTAGAATTTGATAGAAACTA 59.504 37.037 0.00 0.00 0.00 2.24
4354 8678 8.821894 CCAGCAGTAGAATTTGATAGAAACTAC 58.178 37.037 0.00 0.00 0.00 2.73
4355 8679 8.821894 CAGCAGTAGAATTTGATAGAAACTACC 58.178 37.037 0.00 0.00 32.14 3.18
4356 8680 8.763601 AGCAGTAGAATTTGATAGAAACTACCT 58.236 33.333 0.00 0.00 32.14 3.08
4432 9018 6.373779 CACATAGCGAAGAACAACTGATTTT 58.626 36.000 0.00 0.00 0.00 1.82
4437 9023 6.430451 AGCGAAGAACAACTGATTTTACTTG 58.570 36.000 0.00 0.00 0.00 3.16
4439 9025 6.357240 GCGAAGAACAACTGATTTTACTTGAC 59.643 38.462 0.00 0.00 0.00 3.18
4443 9029 6.828785 AGAACAACTGATTTTACTTGACACCT 59.171 34.615 0.00 0.00 0.00 4.00
4448 9034 7.206981 ACTGATTTTACTTGACACCTGAATG 57.793 36.000 0.00 0.00 0.00 2.67
4466 9052 2.753989 TGTTCAGAACGTGCATTGTG 57.246 45.000 8.80 0.00 0.00 3.33
4468 9054 0.310543 TTCAGAACGTGCATTGTGCC 59.689 50.000 0.00 0.00 44.23 5.01
4472 9058 0.664166 GAACGTGCATTGTGCCTTGG 60.664 55.000 0.00 0.00 44.23 3.61
4479 9065 2.104451 TGCATTGTGCCTTGGAAATTGT 59.896 40.909 0.00 0.00 44.23 2.71
4483 9069 5.063817 GCATTGTGCCTTGGAAATTGTTATC 59.936 40.000 0.00 0.00 37.42 1.75
4484 9070 4.799564 TGTGCCTTGGAAATTGTTATCC 57.200 40.909 0.00 0.00 36.21 2.59
4492 9078 5.341872 TGGAAATTGTTATCCATGCCAAG 57.658 39.130 0.00 0.00 40.74 3.61
4524 9110 7.563188 TGGTTTAGTGGTTGAATGCCATAATAT 59.437 33.333 0.00 0.00 38.40 1.28
4526 9112 9.816354 GTTTAGTGGTTGAATGCCATAATATTT 57.184 29.630 0.00 0.00 38.40 1.40
4532 9119 8.324306 TGGTTGAATGCCATAATATTTTTCCAA 58.676 29.630 0.00 0.00 0.00 3.53
4567 9154 3.340814 AGCATTGTGTCCTACCAAGAG 57.659 47.619 0.00 0.00 0.00 2.85
4585 9172 4.026356 AGAGCAGCCACAGAAATTTAGT 57.974 40.909 0.00 0.00 0.00 2.24
4634 9221 5.482908 TCTCAAGTGAGACCTATTTTCTGC 58.517 41.667 6.92 0.00 45.48 4.26
4635 9222 5.012046 TCTCAAGTGAGACCTATTTTCTGCA 59.988 40.000 6.92 0.00 45.48 4.41
4636 9223 5.240891 TCAAGTGAGACCTATTTTCTGCAG 58.759 41.667 7.63 7.63 0.00 4.41
4637 9224 5.012046 TCAAGTGAGACCTATTTTCTGCAGA 59.988 40.000 13.74 13.74 0.00 4.26
4638 9225 4.826556 AGTGAGACCTATTTTCTGCAGAC 58.173 43.478 18.03 1.80 0.00 3.51
4639 9226 4.284490 AGTGAGACCTATTTTCTGCAGACA 59.716 41.667 18.03 7.33 0.00 3.41
4640 9227 4.629200 GTGAGACCTATTTTCTGCAGACAG 59.371 45.833 18.03 11.01 45.95 3.51
4641 9228 4.284490 TGAGACCTATTTTCTGCAGACAGT 59.716 41.667 18.03 9.75 44.77 3.55
4642 9229 5.221722 TGAGACCTATTTTCTGCAGACAGTT 60.222 40.000 18.03 4.29 44.77 3.16
4643 9230 5.625150 AGACCTATTTTCTGCAGACAGTTT 58.375 37.500 18.03 2.50 44.77 2.66
4644 9231 6.064717 AGACCTATTTTCTGCAGACAGTTTT 58.935 36.000 18.03 0.00 44.77 2.43
4645 9232 6.547510 AGACCTATTTTCTGCAGACAGTTTTT 59.452 34.615 18.03 0.00 44.77 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 252 2.693762 GCGTGATGCTGCATGGTGT 61.694 57.895 21.53 0.00 41.73 4.16
398 406 0.242825 CCTCGTACGAAGCAAGGTCA 59.757 55.000 20.00 0.00 0.00 4.02
819 838 3.137360 ACCAGGAATATCTTCTTCCCTGC 59.863 47.826 0.00 0.00 42.68 4.85
1013 1035 5.079643 ACCTGTTTTCTAAGCAATGACCAT 58.920 37.500 0.00 0.00 0.00 3.55
1028 1050 6.679843 TCGAGTTTAACAACAAACCTGTTTT 58.320 32.000 0.00 0.00 43.45 2.43
1103 1152 9.003658 ACTTTAGTGAAAAATACACAGGAGATG 57.996 33.333 0.00 0.00 40.25 2.90
1104 1153 9.574516 AACTTTAGTGAAAAATACACAGGAGAT 57.425 29.630 0.00 0.00 40.25 2.75
1105 1154 8.974060 AACTTTAGTGAAAAATACACAGGAGA 57.026 30.769 0.00 0.00 40.25 3.71
1166 1434 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
1442 5701 5.355350 CCATCTGTCTCACTTGAAATTACCC 59.645 44.000 0.00 0.00 0.00 3.69
1577 5836 2.146342 CCATACTCCATTCATGGCGTC 58.854 52.381 4.69 0.00 41.79 5.19
1592 5851 7.667219 ACCATATGGAATCATTCAGAACCATAC 59.333 37.037 28.77 0.00 44.50 2.39
1786 6045 7.775053 ACTCTTCTAAGTCATCAGAGTTTCT 57.225 36.000 0.00 0.00 41.14 2.52
1790 6049 7.406916 TCCTAACTCTTCTAAGTCATCAGAGT 58.593 38.462 0.00 0.00 44.93 3.24
1809 6068 6.924612 GCTCCTTATAGTACTTGCTTCCTAAC 59.075 42.308 0.00 0.00 0.00 2.34
1851 6110 5.882557 AGACCATTTTGTAACTGGCTCTATG 59.117 40.000 0.00 0.00 33.12 2.23
2274 6533 6.304126 GCAAATGAACTGCAGAAATTTCATG 58.696 36.000 23.41 17.14 38.42 3.07
2975 7258 3.506067 CACCATTCCAGTTAACTCCAACC 59.494 47.826 4.77 0.00 0.00 3.77
3223 7506 1.876156 CCGCAGATTGGGAAGATTAGC 59.124 52.381 0.00 0.00 31.21 3.09
3416 7699 1.279496 CTCAGGTCCAGATTGTCCCA 58.721 55.000 0.00 0.00 0.00 4.37
3429 7712 1.417890 CTGAACTTGTCCCACTCAGGT 59.582 52.381 0.00 0.00 34.66 4.00
3452 7735 2.309528 TGCCTTGACATGGTCGATAC 57.690 50.000 9.01 0.00 34.95 2.24
3494 7777 5.678132 GTACAACACGTACCATTTCCTTT 57.322 39.130 0.00 0.00 44.11 3.11
3522 7805 4.119363 TCCATGCTGCAGGGCTCC 62.119 66.667 27.27 0.00 35.05 4.70
3584 7870 3.963383 ACAACAAATTGAGACGACACC 57.037 42.857 0.00 0.00 39.30 4.16
3590 7876 5.066505 ACAGAGTGGAACAACAAATTGAGAC 59.933 40.000 0.00 0.00 44.16 3.36
3620 7906 4.392138 CCCCTGAATAAACTGAACGAGTTC 59.608 45.833 8.89 8.89 44.68 3.01
3675 7961 4.774726 TGTTGCTCTTCATTCCTAGAGACT 59.225 41.667 0.00 0.00 40.24 3.24
3676 7962 5.078411 TGTTGCTCTTCATTCCTAGAGAC 57.922 43.478 0.00 0.00 40.24 3.36
3677 7963 5.481824 TCTTGTTGCTCTTCATTCCTAGAGA 59.518 40.000 0.00 0.00 40.24 3.10
3678 7964 5.728471 TCTTGTTGCTCTTCATTCCTAGAG 58.272 41.667 0.00 0.00 40.66 2.43
3679 7965 5.745312 TCTTGTTGCTCTTCATTCCTAGA 57.255 39.130 0.00 0.00 0.00 2.43
3680 7966 5.936956 ACTTCTTGTTGCTCTTCATTCCTAG 59.063 40.000 0.00 0.00 0.00 3.02
3681 7967 5.869579 ACTTCTTGTTGCTCTTCATTCCTA 58.130 37.500 0.00 0.00 0.00 2.94
3777 8070 7.147585 ACCATCAGTTAGAAGCTGAATAGTGAT 60.148 37.037 0.00 0.00 44.82 3.06
3798 8091 6.791303 TCAACGGAAGCAAAATTATACCATC 58.209 36.000 0.00 0.00 0.00 3.51
3801 8094 6.560711 ACATCAACGGAAGCAAAATTATACC 58.439 36.000 0.00 0.00 0.00 2.73
3833 8126 0.320421 ACGCGACTGCCAACACTAAT 60.320 50.000 15.93 0.00 38.08 1.73
3848 8141 1.359848 AGAGAGTAAATTGGCACGCG 58.640 50.000 3.53 3.53 0.00 6.01
3866 8159 2.422479 TCGTCGAAACCATGAGGACTAG 59.578 50.000 0.00 0.00 38.69 2.57
3878 8171 3.363128 GCTACTAACTTGGTCGTCGAAAC 59.637 47.826 0.00 0.00 0.00 2.78
3889 8182 8.523658 TCCATGTATAGCATAGCTACTAACTTG 58.476 37.037 0.00 8.28 44.24 3.16
3997 8290 1.376037 GCCCGTCTAGCTTGCTTGT 60.376 57.895 0.00 0.00 0.00 3.16
4035 8330 2.298163 CTCTTGTTTGCCTTGCCTTCAT 59.702 45.455 0.00 0.00 0.00 2.57
4038 8333 2.071778 TCTCTTGTTTGCCTTGCCTT 57.928 45.000 0.00 0.00 0.00 4.35
4039 8334 1.959282 CTTCTCTTGTTTGCCTTGCCT 59.041 47.619 0.00 0.00 0.00 4.75
4040 8335 1.603931 GCTTCTCTTGTTTGCCTTGCC 60.604 52.381 0.00 0.00 0.00 4.52
4042 8337 2.620115 TGAGCTTCTCTTGTTTGCCTTG 59.380 45.455 0.00 0.00 0.00 3.61
4043 8338 2.936202 TGAGCTTCTCTTGTTTGCCTT 58.064 42.857 0.00 0.00 0.00 4.35
4044 8339 2.645838 TGAGCTTCTCTTGTTTGCCT 57.354 45.000 0.00 0.00 0.00 4.75
4045 8340 2.816087 TGATGAGCTTCTCTTGTTTGCC 59.184 45.455 0.00 0.00 0.00 4.52
4046 8341 4.698583 ATGATGAGCTTCTCTTGTTTGC 57.301 40.909 0.00 0.00 0.00 3.68
4047 8342 6.740002 CGTAAATGATGAGCTTCTCTTGTTTG 59.260 38.462 0.00 0.00 0.00 2.93
4048 8343 6.621596 GCGTAAATGATGAGCTTCTCTTGTTT 60.622 38.462 0.00 0.00 0.00 2.83
4049 8344 5.163814 GCGTAAATGATGAGCTTCTCTTGTT 60.164 40.000 0.00 0.00 0.00 2.83
4051 8346 4.330894 TGCGTAAATGATGAGCTTCTCTTG 59.669 41.667 0.00 0.00 0.00 3.02
4072 8396 1.996191 CTAGTCTTGCCGAAGAGTTGC 59.004 52.381 0.00 0.00 41.37 4.17
4073 8397 3.305398 ACTAGTCTTGCCGAAGAGTTG 57.695 47.619 0.00 1.54 41.37 3.16
4080 8404 2.552743 CGGATGATACTAGTCTTGCCGA 59.447 50.000 15.01 0.00 38.57 5.54
4082 8406 4.792521 ATCGGATGATACTAGTCTTGCC 57.207 45.455 0.00 0.00 31.44 4.52
4090 8414 3.251487 TCGTCGCAAATCGGATGATACTA 59.749 43.478 0.00 0.00 39.05 1.82
4093 8417 2.785713 TCGTCGCAAATCGGATGATA 57.214 45.000 0.00 0.00 39.05 2.15
4094 8418 1.794701 CATCGTCGCAAATCGGATGAT 59.205 47.619 0.00 0.00 38.37 2.45
4095 8419 1.202359 TCATCGTCGCAAATCGGATGA 60.202 47.619 0.00 0.00 40.78 2.92
4096 8420 1.208259 TCATCGTCGCAAATCGGATG 58.792 50.000 0.00 0.00 37.84 3.51
4097 8421 1.794701 CATCATCGTCGCAAATCGGAT 59.205 47.619 0.00 0.00 39.05 4.18
4098 8422 1.208259 CATCATCGTCGCAAATCGGA 58.792 50.000 0.00 0.00 39.05 4.55
4099 8423 0.233074 CCATCATCGTCGCAAATCGG 59.767 55.000 0.00 0.00 39.05 4.18
4100 8424 0.383491 GCCATCATCGTCGCAAATCG 60.383 55.000 0.00 0.00 40.15 3.34
4101 8425 0.940126 AGCCATCATCGTCGCAAATC 59.060 50.000 0.00 0.00 0.00 2.17
4102 8426 0.659427 CAGCCATCATCGTCGCAAAT 59.341 50.000 0.00 0.00 0.00 2.32
4103 8427 0.673333 ACAGCCATCATCGTCGCAAA 60.673 50.000 0.00 0.00 0.00 3.68
4104 8428 0.174617 TACAGCCATCATCGTCGCAA 59.825 50.000 0.00 0.00 0.00 4.85
4105 8429 0.174617 TTACAGCCATCATCGTCGCA 59.825 50.000 0.00 0.00 0.00 5.10
4106 8430 0.577269 GTTACAGCCATCATCGTCGC 59.423 55.000 0.00 0.00 0.00 5.19
4107 8431 0.846401 CGTTACAGCCATCATCGTCG 59.154 55.000 0.00 0.00 0.00 5.12
4108 8432 1.588404 CACGTTACAGCCATCATCGTC 59.412 52.381 0.00 0.00 0.00 4.20
4109 8433 1.203758 TCACGTTACAGCCATCATCGT 59.796 47.619 0.00 0.00 0.00 3.73
4110 8434 1.921243 TCACGTTACAGCCATCATCG 58.079 50.000 0.00 0.00 0.00 3.84
4111 8435 5.050490 AGTATTCACGTTACAGCCATCATC 58.950 41.667 0.00 0.00 0.00 2.92
4112 8436 5.023533 AGTATTCACGTTACAGCCATCAT 57.976 39.130 0.00 0.00 0.00 2.45
4113 8437 4.465632 AGTATTCACGTTACAGCCATCA 57.534 40.909 0.00 0.00 0.00 3.07
4114 8438 4.630069 ACAAGTATTCACGTTACAGCCATC 59.370 41.667 0.00 0.00 0.00 3.51
4115 8439 4.391830 CACAAGTATTCACGTTACAGCCAT 59.608 41.667 0.00 0.00 0.00 4.40
4116 8440 3.743911 CACAAGTATTCACGTTACAGCCA 59.256 43.478 0.00 0.00 0.00 4.75
4117 8441 3.744426 ACACAAGTATTCACGTTACAGCC 59.256 43.478 0.00 0.00 0.00 4.85
4118 8442 4.210537 ACACACAAGTATTCACGTTACAGC 59.789 41.667 0.00 0.00 0.00 4.40
4119 8443 5.900339 ACACACAAGTATTCACGTTACAG 57.100 39.130 0.00 0.00 0.00 2.74
4120 8444 6.313164 TCAAACACACAAGTATTCACGTTACA 59.687 34.615 0.00 0.00 0.00 2.41
4121 8445 6.707711 TCAAACACACAAGTATTCACGTTAC 58.292 36.000 0.00 0.00 0.00 2.50
4122 8446 6.905544 TCAAACACACAAGTATTCACGTTA 57.094 33.333 0.00 0.00 0.00 3.18
4123 8447 5.804692 TCAAACACACAAGTATTCACGTT 57.195 34.783 0.00 0.00 0.00 3.99
4124 8448 5.747565 CATCAAACACACAAGTATTCACGT 58.252 37.500 0.00 0.00 0.00 4.49
4125 8449 4.612614 GCATCAAACACACAAGTATTCACG 59.387 41.667 0.00 0.00 0.00 4.35
4126 8450 5.518812 TGCATCAAACACACAAGTATTCAC 58.481 37.500 0.00 0.00 0.00 3.18
4127 8451 5.764487 TGCATCAAACACACAAGTATTCA 57.236 34.783 0.00 0.00 0.00 2.57
4128 8452 6.208644 AGTTGCATCAAACACACAAGTATTC 58.791 36.000 0.00 0.00 32.21 1.75
4129 8453 6.147864 AGTTGCATCAAACACACAAGTATT 57.852 33.333 0.00 0.00 32.21 1.89
4130 8454 5.772825 AGTTGCATCAAACACACAAGTAT 57.227 34.783 0.00 0.00 32.21 2.12
4143 8467 1.539388 CCAAGCGGTAAAGTTGCATCA 59.461 47.619 0.00 0.00 0.00 3.07
4144 8468 1.539827 ACCAAGCGGTAAAGTTGCATC 59.460 47.619 0.00 0.00 46.71 3.91
4145 8469 1.616159 ACCAAGCGGTAAAGTTGCAT 58.384 45.000 0.00 0.00 46.71 3.96
4146 8470 3.103637 ACCAAGCGGTAAAGTTGCA 57.896 47.368 0.00 0.00 46.71 4.08
4150 8474 9.815996 TGTGAAAAACAAACCAAGCGGTAAAGT 62.816 37.037 0.00 0.00 38.99 2.66
4151 8475 7.552623 TGTGAAAAACAAACCAAGCGGTAAAG 61.553 38.462 0.00 0.00 38.99 1.85
4152 8476 5.795772 TGTGAAAAACAAACCAAGCGGTAAA 60.796 36.000 0.00 0.00 38.99 2.01
4153 8477 4.321750 TGTGAAAAACAAACCAAGCGGTAA 60.322 37.500 0.00 0.00 38.99 2.85
4154 8478 3.192844 TGTGAAAAACAAACCAAGCGGTA 59.807 39.130 0.00 0.00 38.99 4.02
4156 8480 2.611518 TGTGAAAAACAAACCAAGCGG 58.388 42.857 0.00 0.00 35.24 5.52
4157 8481 4.653806 TTTGTGAAAAACAAACCAAGCG 57.346 36.364 0.00 0.00 44.97 4.68
4158 8482 5.285845 GCATTTTGTGAAAAACAAACCAAGC 59.714 36.000 3.26 2.82 44.97 4.01
4159 8483 6.305160 GTGCATTTTGTGAAAAACAAACCAAG 59.695 34.615 3.26 0.00 44.97 3.61
4160 8484 6.145535 GTGCATTTTGTGAAAAACAAACCAA 58.854 32.000 3.26 0.00 44.97 3.67
4161 8485 5.239306 TGTGCATTTTGTGAAAAACAAACCA 59.761 32.000 3.26 0.13 44.97 3.67
4162 8486 5.567154 GTGTGCATTTTGTGAAAAACAAACC 59.433 36.000 3.26 0.00 44.97 3.27
4163 8487 5.567154 GGTGTGCATTTTGTGAAAAACAAAC 59.433 36.000 3.26 0.00 44.97 2.93
4164 8488 5.471456 AGGTGTGCATTTTGTGAAAAACAAA 59.529 32.000 0.00 0.00 44.97 2.83
4165 8489 4.999950 AGGTGTGCATTTTGTGAAAAACAA 59.000 33.333 0.00 0.00 44.97 2.83
4166 8490 4.573900 AGGTGTGCATTTTGTGAAAAACA 58.426 34.783 0.00 0.00 36.85 2.83
4167 8491 5.121454 TGAAGGTGTGCATTTTGTGAAAAAC 59.879 36.000 0.00 0.00 33.47 2.43
4168 8492 5.240891 TGAAGGTGTGCATTTTGTGAAAAA 58.759 33.333 0.00 0.00 33.47 1.94
4169 8493 4.825422 TGAAGGTGTGCATTTTGTGAAAA 58.175 34.783 0.00 0.00 34.41 2.29
4170 8494 4.462508 TGAAGGTGTGCATTTTGTGAAA 57.537 36.364 0.00 0.00 0.00 2.69
4171 8495 4.669206 ATGAAGGTGTGCATTTTGTGAA 57.331 36.364 0.00 0.00 0.00 3.18
4172 8496 5.048782 GTCTATGAAGGTGTGCATTTTGTGA 60.049 40.000 0.00 0.00 0.00 3.58
4173 8497 5.048504 AGTCTATGAAGGTGTGCATTTTGTG 60.049 40.000 0.00 0.00 0.00 3.33
4174 8498 5.072741 AGTCTATGAAGGTGTGCATTTTGT 58.927 37.500 0.00 0.00 0.00 2.83
4175 8499 5.413833 AGAGTCTATGAAGGTGTGCATTTTG 59.586 40.000 0.00 0.00 0.00 2.44
4176 8500 5.564550 AGAGTCTATGAAGGTGTGCATTTT 58.435 37.500 0.00 0.00 0.00 1.82
4177 8501 5.046014 AGAGAGTCTATGAAGGTGTGCATTT 60.046 40.000 0.00 0.00 0.00 2.32
4178 8502 4.469227 AGAGAGTCTATGAAGGTGTGCATT 59.531 41.667 0.00 0.00 0.00 3.56
4179 8503 4.029520 AGAGAGTCTATGAAGGTGTGCAT 58.970 43.478 0.00 0.00 0.00 3.96
4180 8504 3.194329 CAGAGAGTCTATGAAGGTGTGCA 59.806 47.826 9.22 0.00 0.00 4.57
4181 8505 3.194542 ACAGAGAGTCTATGAAGGTGTGC 59.805 47.826 21.29 0.00 0.00 4.57
4182 8506 4.992688 GACAGAGAGTCTATGAAGGTGTG 58.007 47.826 21.29 0.00 44.09 3.82
4195 8519 7.046652 CAGAACCATTTGATATGACAGAGAGT 58.953 38.462 0.00 0.00 0.00 3.24
4196 8520 7.046652 ACAGAACCATTTGATATGACAGAGAG 58.953 38.462 0.00 0.00 0.00 3.20
4197 8521 6.950842 ACAGAACCATTTGATATGACAGAGA 58.049 36.000 0.00 0.00 0.00 3.10
4198 8522 7.621428 AACAGAACCATTTGATATGACAGAG 57.379 36.000 0.00 0.00 0.00 3.35
4199 8523 7.148423 CGAAACAGAACCATTTGATATGACAGA 60.148 37.037 0.00 0.00 0.00 3.41
4200 8524 6.963242 CGAAACAGAACCATTTGATATGACAG 59.037 38.462 0.00 0.00 0.00 3.51
4201 8525 6.652900 TCGAAACAGAACCATTTGATATGACA 59.347 34.615 0.00 0.00 0.00 3.58
4202 8526 7.072177 TCGAAACAGAACCATTTGATATGAC 57.928 36.000 0.00 0.00 0.00 3.06
4203 8527 7.864108 ATCGAAACAGAACCATTTGATATGA 57.136 32.000 0.00 0.00 0.00 2.15
4208 8532 8.455682 GGTAATTATCGAAACAGAACCATTTGA 58.544 33.333 0.00 0.00 0.00 2.69
4209 8533 7.428183 CGGTAATTATCGAAACAGAACCATTTG 59.572 37.037 12.90 0.00 29.66 2.32
4210 8534 7.414762 CCGGTAATTATCGAAACAGAACCATTT 60.415 37.037 19.57 0.00 29.66 2.32
4211 8535 6.037830 CCGGTAATTATCGAAACAGAACCATT 59.962 38.462 19.57 0.00 29.66 3.16
4212 8536 5.526111 CCGGTAATTATCGAAACAGAACCAT 59.474 40.000 19.57 0.00 29.66 3.55
4213 8537 4.871557 CCGGTAATTATCGAAACAGAACCA 59.128 41.667 19.57 0.00 29.66 3.67
4214 8538 5.111293 TCCGGTAATTATCGAAACAGAACC 58.889 41.667 19.57 0.00 29.66 3.62
4215 8539 5.809051 ACTCCGGTAATTATCGAAACAGAAC 59.191 40.000 19.57 0.00 29.66 3.01
4216 8540 5.969423 ACTCCGGTAATTATCGAAACAGAA 58.031 37.500 19.57 0.00 29.66 3.02
4217 8541 5.125900 TGACTCCGGTAATTATCGAAACAGA 59.874 40.000 19.57 6.76 29.66 3.41
4218 8542 5.345702 TGACTCCGGTAATTATCGAAACAG 58.654 41.667 19.57 11.17 29.66 3.16
4219 8543 5.327616 TGACTCCGGTAATTATCGAAACA 57.672 39.130 19.57 10.52 29.66 2.83
4220 8544 6.477688 TGAATGACTCCGGTAATTATCGAAAC 59.522 38.462 19.57 8.29 29.66 2.78
4221 8545 6.575267 TGAATGACTCCGGTAATTATCGAAA 58.425 36.000 19.57 6.38 29.66 3.46
4222 8546 6.151663 TGAATGACTCCGGTAATTATCGAA 57.848 37.500 19.57 0.00 29.66 3.71
4223 8547 5.777850 TGAATGACTCCGGTAATTATCGA 57.222 39.130 19.57 5.08 29.66 3.59
4224 8548 6.073765 CCTTTGAATGACTCCGGTAATTATCG 60.074 42.308 11.26 11.26 0.00 2.92
4225 8549 6.990349 TCCTTTGAATGACTCCGGTAATTATC 59.010 38.462 0.00 0.00 0.00 1.75
4226 8550 6.895782 TCCTTTGAATGACTCCGGTAATTAT 58.104 36.000 0.00 0.00 0.00 1.28
4227 8551 6.302535 TCCTTTGAATGACTCCGGTAATTA 57.697 37.500 0.00 0.00 0.00 1.40
4228 8552 5.174037 TCCTTTGAATGACTCCGGTAATT 57.826 39.130 0.00 0.00 0.00 1.40
4229 8553 4.837093 TCCTTTGAATGACTCCGGTAAT 57.163 40.909 0.00 0.00 0.00 1.89
4230 8554 4.041198 AGTTCCTTTGAATGACTCCGGTAA 59.959 41.667 0.00 0.00 31.98 2.85
4231 8555 3.581332 AGTTCCTTTGAATGACTCCGGTA 59.419 43.478 0.00 0.00 31.98 4.02
4232 8556 2.372172 AGTTCCTTTGAATGACTCCGGT 59.628 45.455 0.00 0.00 31.98 5.28
4233 8557 3.059352 AGTTCCTTTGAATGACTCCGG 57.941 47.619 0.00 0.00 31.98 5.14
4234 8558 4.093556 GCTTAGTTCCTTTGAATGACTCCG 59.906 45.833 0.00 0.00 31.98 4.63
4235 8559 5.003804 TGCTTAGTTCCTTTGAATGACTCC 58.996 41.667 0.00 0.00 31.98 3.85
4236 8560 6.348868 CCTTGCTTAGTTCCTTTGAATGACTC 60.349 42.308 0.00 0.00 31.98 3.36
4237 8561 5.474876 CCTTGCTTAGTTCCTTTGAATGACT 59.525 40.000 0.00 0.00 31.98 3.41
4238 8562 5.473504 TCCTTGCTTAGTTCCTTTGAATGAC 59.526 40.000 0.00 0.00 31.98 3.06
4239 8563 5.630121 TCCTTGCTTAGTTCCTTTGAATGA 58.370 37.500 0.00 0.00 31.98 2.57
4240 8564 5.964958 TCCTTGCTTAGTTCCTTTGAATG 57.035 39.130 0.00 0.00 31.98 2.67
4241 8565 5.833131 TGTTCCTTGCTTAGTTCCTTTGAAT 59.167 36.000 0.00 0.00 31.98 2.57
4242 8566 5.067283 GTGTTCCTTGCTTAGTTCCTTTGAA 59.933 40.000 0.00 0.00 0.00 2.69
4243 8567 4.578928 GTGTTCCTTGCTTAGTTCCTTTGA 59.421 41.667 0.00 0.00 0.00 2.69
4244 8568 4.338118 TGTGTTCCTTGCTTAGTTCCTTTG 59.662 41.667 0.00 0.00 0.00 2.77
4245 8569 4.532834 TGTGTTCCTTGCTTAGTTCCTTT 58.467 39.130 0.00 0.00 0.00 3.11
4246 8570 4.164843 TGTGTTCCTTGCTTAGTTCCTT 57.835 40.909 0.00 0.00 0.00 3.36
4247 8571 3.857157 TGTGTTCCTTGCTTAGTTCCT 57.143 42.857 0.00 0.00 0.00 3.36
4248 8572 3.883489 AGTTGTGTTCCTTGCTTAGTTCC 59.117 43.478 0.00 0.00 0.00 3.62
4249 8573 5.163652 ACAAGTTGTGTTCCTTGCTTAGTTC 60.164 40.000 7.96 0.00 41.36 3.01
4250 8574 4.705023 ACAAGTTGTGTTCCTTGCTTAGTT 59.295 37.500 7.96 0.00 41.36 2.24
4251 8575 4.096382 CACAAGTTGTGTTCCTTGCTTAGT 59.904 41.667 24.96 0.00 43.08 2.24
4252 8576 4.498009 CCACAAGTTGTGTTCCTTGCTTAG 60.498 45.833 29.28 9.94 46.45 2.18
4253 8577 3.380004 CCACAAGTTGTGTTCCTTGCTTA 59.620 43.478 29.28 0.00 46.45 3.09
4254 8578 2.166254 CCACAAGTTGTGTTCCTTGCTT 59.834 45.455 29.28 0.00 46.45 3.91
4255 8579 1.750778 CCACAAGTTGTGTTCCTTGCT 59.249 47.619 29.28 0.00 46.45 3.91
4256 8580 1.476488 ACCACAAGTTGTGTTCCTTGC 59.524 47.619 29.28 0.00 46.45 4.01
4257 8581 3.866883 AACCACAAGTTGTGTTCCTTG 57.133 42.857 29.28 17.63 46.45 3.61
4258 8582 5.068591 GGAATAACCACAAGTTGTGTTCCTT 59.931 40.000 30.49 21.04 46.45 3.36
4259 8583 4.583073 GGAATAACCACAAGTTGTGTTCCT 59.417 41.667 30.49 18.37 46.45 3.36
4260 8584 4.583073 AGGAATAACCACAAGTTGTGTTCC 59.417 41.667 30.58 30.58 46.45 3.62
4261 8585 5.767816 AGGAATAACCACAAGTTGTGTTC 57.232 39.130 29.28 24.52 46.45 3.18
4262 8586 6.362248 AGTAGGAATAACCACAAGTTGTGTT 58.638 36.000 29.28 24.11 46.45 3.32
4263 8587 5.937111 AGTAGGAATAACCACAAGTTGTGT 58.063 37.500 29.28 17.39 46.45 3.72
4265 8589 7.069877 TGTAGTAGGAATAACCACAAGTTGT 57.930 36.000 1.64 1.64 39.67 3.32
4266 8590 8.561738 AATGTAGTAGGAATAACCACAAGTTG 57.438 34.615 0.00 0.00 39.67 3.16
4267 8591 9.886132 CTAATGTAGTAGGAATAACCACAAGTT 57.114 33.333 0.00 0.00 42.83 2.66
4268 8592 9.043548 ACTAATGTAGTAGGAATAACCACAAGT 57.956 33.333 0.00 0.00 42.04 3.16
4271 8595 9.478238 TGTACTAATGTAGTAGGAATAACCACA 57.522 33.333 0.00 0.00 41.59 4.17
4272 8596 9.962783 CTGTACTAATGTAGTAGGAATAACCAC 57.037 37.037 0.00 0.00 41.59 4.16
4273 8597 9.705103 ACTGTACTAATGTAGTAGGAATAACCA 57.295 33.333 0.00 0.00 41.59 3.67
4300 8624 9.143155 ACCAGGAATAAGTTGTTGAAAAGTATT 57.857 29.630 0.00 0.00 0.00 1.89
4301 8625 8.576442 CACCAGGAATAAGTTGTTGAAAAGTAT 58.424 33.333 0.00 0.00 0.00 2.12
4302 8626 7.469456 GCACCAGGAATAAGTTGTTGAAAAGTA 60.469 37.037 0.00 0.00 0.00 2.24
4303 8627 6.682861 GCACCAGGAATAAGTTGTTGAAAAGT 60.683 38.462 0.00 0.00 0.00 2.66
4304 8628 5.691754 GCACCAGGAATAAGTTGTTGAAAAG 59.308 40.000 0.00 0.00 0.00 2.27
4305 8629 5.452636 GGCACCAGGAATAAGTTGTTGAAAA 60.453 40.000 0.00 0.00 0.00 2.29
4306 8630 4.038642 GGCACCAGGAATAAGTTGTTGAAA 59.961 41.667 0.00 0.00 0.00 2.69
4307 8631 3.572255 GGCACCAGGAATAAGTTGTTGAA 59.428 43.478 0.00 0.00 0.00 2.69
4308 8632 3.153919 GGCACCAGGAATAAGTTGTTGA 58.846 45.455 0.00 0.00 0.00 3.18
4309 8633 2.890311 TGGCACCAGGAATAAGTTGTTG 59.110 45.455 0.00 0.00 0.00 3.33
4310 8634 3.157087 CTGGCACCAGGAATAAGTTGTT 58.843 45.455 8.93 0.00 40.17 2.83
4311 8635 2.795329 CTGGCACCAGGAATAAGTTGT 58.205 47.619 8.93 0.00 40.17 3.32
4312 8636 1.474077 GCTGGCACCAGGAATAAGTTG 59.526 52.381 18.14 0.00 43.77 3.16
4313 8637 1.075374 TGCTGGCACCAGGAATAAGTT 59.925 47.619 18.14 0.00 41.33 2.66
4314 8638 0.698238 TGCTGGCACCAGGAATAAGT 59.302 50.000 18.14 0.00 41.33 2.24
4315 8639 1.340405 ACTGCTGGCACCAGGAATAAG 60.340 52.381 18.14 6.26 43.52 1.73
4316 8640 0.698238 ACTGCTGGCACCAGGAATAA 59.302 50.000 18.14 0.00 43.52 1.40
4317 8641 1.486310 CTACTGCTGGCACCAGGAATA 59.514 52.381 18.14 8.90 43.52 1.75
4318 8642 0.254178 CTACTGCTGGCACCAGGAAT 59.746 55.000 18.14 8.13 43.52 3.01
4319 8643 0.835971 TCTACTGCTGGCACCAGGAA 60.836 55.000 18.14 0.71 43.52 3.36
4320 8644 0.835971 TTCTACTGCTGGCACCAGGA 60.836 55.000 18.14 14.51 43.77 3.86
4321 8645 0.254178 ATTCTACTGCTGGCACCAGG 59.746 55.000 18.14 5.20 43.77 4.45
4322 8646 2.119801 AATTCTACTGCTGGCACCAG 57.880 50.000 12.54 12.54 46.15 4.00
4323 8647 2.161855 CAAATTCTACTGCTGGCACCA 58.838 47.619 0.00 0.00 0.00 4.17
4324 8648 2.436417 TCAAATTCTACTGCTGGCACC 58.564 47.619 0.00 0.00 0.00 5.01
4325 8649 5.118990 TCTATCAAATTCTACTGCTGGCAC 58.881 41.667 0.00 0.00 0.00 5.01
4326 8650 5.357742 TCTATCAAATTCTACTGCTGGCA 57.642 39.130 0.00 0.00 0.00 4.92
4327 8651 6.317391 AGTTTCTATCAAATTCTACTGCTGGC 59.683 38.462 0.00 0.00 0.00 4.85
4328 8652 7.856145 AGTTTCTATCAAATTCTACTGCTGG 57.144 36.000 0.00 0.00 0.00 4.85
4329 8653 8.821894 GGTAGTTTCTATCAAATTCTACTGCTG 58.178 37.037 0.00 0.00 0.00 4.41
4330 8654 8.763601 AGGTAGTTTCTATCAAATTCTACTGCT 58.236 33.333 0.00 0.00 0.00 4.24
4331 8655 8.950208 AGGTAGTTTCTATCAAATTCTACTGC 57.050 34.615 0.00 0.00 0.00 4.40
4350 8674 9.948747 AGGTACCAAGAATAAGTTATAGGTAGT 57.051 33.333 15.94 5.43 31.61 2.73
4352 8676 9.719433 ACAGGTACCAAGAATAAGTTATAGGTA 57.281 33.333 15.94 4.51 0.00 3.08
4353 8677 8.619683 ACAGGTACCAAGAATAAGTTATAGGT 57.380 34.615 15.94 11.57 0.00 3.08
4364 8688 9.975218 ATCAAATAAGTTACAGGTACCAAGAAT 57.025 29.630 15.94 0.00 0.00 2.40
4365 8689 9.802039 AATCAAATAAGTTACAGGTACCAAGAA 57.198 29.630 15.94 1.20 0.00 2.52
4369 8693 9.116067 GCATAATCAAATAAGTTACAGGTACCA 57.884 33.333 15.94 0.00 0.00 3.25
4370 8694 9.116067 TGCATAATCAAATAAGTTACAGGTACC 57.884 33.333 2.73 2.73 0.00 3.34
4403 8727 2.698803 TGTTCTTCGCTATGTGCATGT 58.301 42.857 0.00 0.00 43.06 3.21
4409 8733 6.560253 AAAATCAGTTGTTCTTCGCTATGT 57.440 33.333 0.00 0.00 0.00 2.29
4410 8734 7.743104 AGTAAAATCAGTTGTTCTTCGCTATG 58.257 34.615 0.00 0.00 0.00 2.23
4411 8735 7.907214 AGTAAAATCAGTTGTTCTTCGCTAT 57.093 32.000 0.00 0.00 0.00 2.97
4413 8737 6.260050 TCAAGTAAAATCAGTTGTTCTTCGCT 59.740 34.615 0.00 0.00 31.89 4.93
4414 8738 6.357240 GTCAAGTAAAATCAGTTGTTCTTCGC 59.643 38.462 0.00 0.00 31.89 4.70
4415 8739 7.373441 GTGTCAAGTAAAATCAGTTGTTCTTCG 59.627 37.037 0.00 0.00 31.89 3.79
4416 8740 7.644157 GGTGTCAAGTAAAATCAGTTGTTCTTC 59.356 37.037 0.00 0.00 31.89 2.87
4417 8741 7.339466 AGGTGTCAAGTAAAATCAGTTGTTCTT 59.661 33.333 0.00 0.00 31.89 2.52
4418 8742 6.828785 AGGTGTCAAGTAAAATCAGTTGTTCT 59.171 34.615 0.00 0.00 31.89 3.01
4419 8743 6.912591 CAGGTGTCAAGTAAAATCAGTTGTTC 59.087 38.462 0.00 0.00 31.89 3.18
4420 8744 6.601613 TCAGGTGTCAAGTAAAATCAGTTGTT 59.398 34.615 0.00 0.00 31.89 2.83
4421 8745 6.119536 TCAGGTGTCAAGTAAAATCAGTTGT 58.880 36.000 0.00 0.00 31.89 3.32
4443 9029 3.314913 ACAATGCACGTTCTGAACATTCA 59.685 39.130 19.56 13.01 35.57 2.57
4448 9034 1.398595 GCACAATGCACGTTCTGAAC 58.601 50.000 10.48 10.48 44.26 3.18
4459 9045 2.769893 ACAATTTCCAAGGCACAATGC 58.230 42.857 0.00 0.00 44.08 3.56
4460 9046 5.581874 GGATAACAATTTCCAAGGCACAATG 59.418 40.000 0.00 0.00 31.99 2.82
4466 9052 4.122046 GCATGGATAACAATTTCCAAGGC 58.878 43.478 0.78 4.84 44.83 4.35
4468 9054 5.341872 TGGCATGGATAACAATTTCCAAG 57.658 39.130 0.78 0.00 44.83 3.61
4472 9058 5.045872 GCTCTTGGCATGGATAACAATTTC 58.954 41.667 0.00 0.00 41.35 2.17
4479 9065 2.646930 CACAGCTCTTGGCATGGATAA 58.353 47.619 0.00 0.00 44.79 1.75
4483 9069 3.599584 CCACAGCTCTTGGCATGG 58.400 61.111 0.00 0.00 44.79 3.66
4484 9070 0.963962 AAACCACAGCTCTTGGCATG 59.036 50.000 10.38 0.00 44.79 4.06
4492 9078 2.846193 TCAACCACTAAACCACAGCTC 58.154 47.619 0.00 0.00 0.00 4.09
4528 9114 9.034800 ACAATGCTTTCCTAAATTTATCTTGGA 57.965 29.630 0.00 0.00 0.00 3.53
4532 9119 8.470002 GGACACAATGCTTTCCTAAATTTATCT 58.530 33.333 0.00 0.00 0.00 1.98
4552 9139 0.321671 GCTGCTCTTGGTAGGACACA 59.678 55.000 0.00 0.00 0.00 3.72
4567 9154 4.022849 ACAAGACTAAATTTCTGTGGCTGC 60.023 41.667 0.00 0.00 0.00 5.25
4585 9172 9.725019 ATACTCATAAATTCACAACTCACAAGA 57.275 29.630 0.00 0.00 0.00 3.02
4622 9209 6.715347 AAAAACTGTCTGCAGAAAATAGGT 57.285 33.333 20.19 10.46 45.28 3.08
4646 9233 2.556257 GCTTCCCGCAAAAAGGAAAAA 58.444 42.857 0.00 0.00 41.54 1.94
4647 9234 2.232756 GCTTCCCGCAAAAAGGAAAA 57.767 45.000 0.00 0.00 41.54 2.29
4648 9235 3.978460 GCTTCCCGCAAAAAGGAAA 57.022 47.368 0.00 0.00 41.54 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.