Multiple sequence alignment - TraesCS6D01G400500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G400500 chr6D 100.000 3545 0 0 700 4244 470104847 470101303 0.000000e+00 6547.0
1 TraesCS6D01G400500 chr6D 79.169 1709 235 56 1953 3588 470047153 470048813 0.000000e+00 1072.0
2 TraesCS6D01G400500 chr6D 82.628 898 135 16 947 1842 470046159 470047037 0.000000e+00 774.0
3 TraesCS6D01G400500 chr6D 83.214 840 113 16 1006 1840 470052773 470053589 0.000000e+00 745.0
4 TraesCS6D01G400500 chr6D 100.000 309 0 0 1 309 470105546 470105238 4.760000e-159 571.0
5 TraesCS6D01G400500 chr6D 87.805 205 20 2 4041 4241 470293331 470293534 7.090000e-58 235.0
6 TraesCS6D01G400500 chr6D 89.796 98 8 1 3740 3837 470290998 470291093 1.600000e-24 124.0
7 TraesCS6D01G400500 chr6A 93.788 3107 105 25 819 3890 614967994 614964941 0.000000e+00 4588.0
8 TraesCS6D01G400500 chr6A 80.865 1526 199 48 2142 3609 614842747 614844237 0.000000e+00 1114.0
9 TraesCS6D01G400500 chr6A 82.751 887 134 12 950 1835 614809205 614810073 0.000000e+00 773.0
10 TraesCS6D01G400500 chr6A 83.194 839 115 12 1006 1840 614841641 614842457 0.000000e+00 745.0
11 TraesCS6D01G400500 chr6A 83.639 599 73 14 2145 2738 614810453 614811031 1.340000e-149 540.0
12 TraesCS6D01G400500 chr6A 79.264 815 104 24 2835 3588 614811104 614811914 3.790000e-140 508.0
13 TraesCS6D01G400500 chr6A 84.141 227 22 7 2960 3175 614807246 614807469 1.550000e-49 207.0
14 TraesCS6D01G400500 chrUn 78.708 1517 220 49 2142 3593 310058010 310056532 0.000000e+00 917.0
15 TraesCS6D01G400500 chrUn 91.290 310 26 1 1 309 419682158 419681849 5.070000e-114 422.0
16 TraesCS6D01G400500 chrUn 91.290 310 26 1 1 309 419683512 419683203 5.070000e-114 422.0
17 TraesCS6D01G400500 chrUn 91.531 307 25 1 1 306 423373727 423374033 5.070000e-114 422.0
18 TraesCS6D01G400500 chrUn 95.798 119 5 0 700 818 350582990 350582872 4.330000e-45 193.0
19 TraesCS6D01G400500 chrUn 94.958 119 6 0 700 818 331728792 331728674 2.010000e-43 187.0
20 TraesCS6D01G400500 chr6B 81.395 1161 145 25 2147 3263 716264158 716265291 0.000000e+00 881.0
21 TraesCS6D01G400500 chr6B 92.105 304 23 1 1 303 461954758 461955061 1.090000e-115 427.0
22 TraesCS6D01G400500 chr6B 96.522 115 4 0 700 814 461955165 461955279 1.560000e-44 191.0
23 TraesCS6D01G400500 chr3B 80.546 879 142 23 951 1825 43057223 43058076 0.000000e+00 649.0
24 TraesCS6D01G400500 chr7D 93.871 310 18 1 1 309 452993567 452993258 2.310000e-127 466.0
25 TraesCS6D01G400500 chr7D 98.319 119 2 0 700 818 452993156 452993038 4.300000e-50 209.0
26 TraesCS6D01G400500 chr7D 75.567 397 83 8 1145 1540 174296159 174296542 2.610000e-42 183.0
27 TraesCS6D01G400500 chr2A 92.508 307 22 1 1 306 22564575 22564881 5.040000e-119 438.0
28 TraesCS6D01G400500 chr2A 88.158 76 5 3 2617 2690 756947429 756947356 2.100000e-13 87.9
29 TraesCS6D01G400500 chr1D 91.613 310 25 1 1 309 28238805 28238496 1.090000e-115 427.0
30 TraesCS6D01G400500 chr1D 91.290 310 26 1 1 309 17329903 17329594 5.070000e-114 422.0
31 TraesCS6D01G400500 chr1D 91.290 310 26 1 1 309 443435444 443435135 5.070000e-114 422.0
32 TraesCS6D01G400500 chr1D 95.798 119 5 0 700 818 443435033 443434915 4.330000e-45 193.0
33 TraesCS6D01G400500 chr1D 94.958 119 6 0 700 818 17388993 17388875 2.010000e-43 187.0
34 TraesCS6D01G400500 chr5D 98.305 118 2 0 700 817 556039662 556039779 1.550000e-49 207.0
35 TraesCS6D01G400500 chr7B 95.798 119 5 0 700 818 25963965 25964083 4.330000e-45 193.0
36 TraesCS6D01G400500 chr7B 84.118 170 26 1 1255 1424 138755636 138755804 3.400000e-36 163.0
37 TraesCS6D01G400500 chr2D 94.958 119 6 0 700 818 501688577 501688695 2.010000e-43 187.0
38 TraesCS6D01G400500 chr7A 76.655 287 64 3 1255 1540 176278182 176278466 5.680000e-34 156.0
39 TraesCS6D01G400500 chr2B 88.158 76 5 3 2617 2690 767381877 767381950 2.100000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G400500 chr6D 470101303 470105546 4243 True 3559.000000 6547 100.000000 1 4244 2 chr6D.!!$R1 4243
1 TraesCS6D01G400500 chr6D 470046159 470053589 7430 False 863.666667 1072 81.670333 947 3588 3 chr6D.!!$F1 2641
2 TraesCS6D01G400500 chr6A 614964941 614967994 3053 True 4588.000000 4588 93.788000 819 3890 1 chr6A.!!$R1 3071
3 TraesCS6D01G400500 chr6A 614841641 614844237 2596 False 929.500000 1114 82.029500 1006 3609 2 chr6A.!!$F2 2603
4 TraesCS6D01G400500 chr6A 614807246 614811914 4668 False 507.000000 773 82.448750 950 3588 4 chr6A.!!$F1 2638
5 TraesCS6D01G400500 chrUn 310056532 310058010 1478 True 917.000000 917 78.708000 2142 3593 1 chrUn.!!$R1 1451
6 TraesCS6D01G400500 chrUn 419681849 419683512 1663 True 422.000000 422 91.290000 1 309 2 chrUn.!!$R4 308
7 TraesCS6D01G400500 chr6B 716264158 716265291 1133 False 881.000000 881 81.395000 2147 3263 1 chr6B.!!$F1 1116
8 TraesCS6D01G400500 chr6B 461954758 461955279 521 False 309.000000 427 94.313500 1 814 2 chr6B.!!$F2 813
9 TraesCS6D01G400500 chr3B 43057223 43058076 853 False 649.000000 649 80.546000 951 1825 1 chr3B.!!$F1 874
10 TraesCS6D01G400500 chr7D 452993038 452993567 529 True 337.500000 466 96.095000 1 818 2 chr7D.!!$R1 817
11 TraesCS6D01G400500 chr1D 443434915 443435444 529 True 307.500000 422 93.544000 1 818 2 chr1D.!!$R4 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 894 0.322322 TCGATTGGTAGCACCGGTTT 59.678 50.0 2.97 0.0 42.58 3.27 F
1435 2475 0.322816 ATCATGGCCAAGCAACGACT 60.323 50.0 10.96 0.0 0.00 4.18 F
2202 3418 0.534203 TCCTTGTCCGCAACAGGAAC 60.534 55.0 0.49 0.0 42.77 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2575 3809 0.109132 CCGGATCTTTTGCACCAAGC 60.109 55.0 0.00 0.0 45.96 4.01 R
2578 3812 0.109532 TGACCGGATCTTTTGCACCA 59.890 50.0 9.46 0.0 0.00 4.17 R
3905 7785 0.029567 GGTCATACGAGTCTGCGGAG 59.970 60.0 0.00 0.0 35.12 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.885724 TCGAGATAATGCCACTCAACA 57.114 42.857 0.00 0.00 0.00 3.33
103 104 2.393768 AAGCTTGACCGCGCATGAG 61.394 57.895 8.75 0.00 34.40 2.90
156 157 6.268797 CGTATGTACGCTTTCATACACAAT 57.731 37.500 16.54 0.00 43.51 2.71
286 287 5.344743 TCTTGTACAAAATTGGGCACAAA 57.655 34.783 4.97 0.00 40.55 2.83
836 838 3.120060 GGTGAGCTGTTCAGTGCAATAAG 60.120 47.826 0.00 0.00 36.21 1.73
853 859 6.039047 TGCAATAAGGAATGCATCTTCTCTTC 59.961 38.462 0.00 0.00 46.87 2.87
856 862 8.344098 CAATAAGGAATGCATCTTCTCTTCTTC 58.656 37.037 0.00 0.00 0.00 2.87
883 889 1.084289 GGTTGTCGATTGGTAGCACC 58.916 55.000 0.00 0.00 39.22 5.01
887 893 0.390735 GTCGATTGGTAGCACCGGTT 60.391 55.000 2.97 0.00 42.58 4.44
888 894 0.322322 TCGATTGGTAGCACCGGTTT 59.678 50.000 2.97 0.00 42.58 3.27
1044 2053 2.525629 TGGTGGGAGGAGTCGCAA 60.526 61.111 0.00 0.00 46.39 4.85
1244 2274 4.455877 ACAAAACGATGGAGATGAAGGAAC 59.544 41.667 0.00 0.00 0.00 3.62
1246 2276 5.677319 AAACGATGGAGATGAAGGAACTA 57.323 39.130 0.00 0.00 38.49 2.24
1247 2277 5.878406 AACGATGGAGATGAAGGAACTAT 57.122 39.130 0.00 0.00 38.49 2.12
1248 2278 5.207110 ACGATGGAGATGAAGGAACTATG 57.793 43.478 0.00 0.00 38.49 2.23
1249 2279 4.039730 ACGATGGAGATGAAGGAACTATGG 59.960 45.833 0.00 0.00 38.49 2.74
1250 2280 4.562347 CGATGGAGATGAAGGAACTATGGG 60.562 50.000 0.00 0.00 38.49 4.00
1251 2281 2.439507 TGGAGATGAAGGAACTATGGGC 59.560 50.000 0.00 0.00 38.49 5.36
1252 2282 2.708325 GGAGATGAAGGAACTATGGGCT 59.292 50.000 0.00 0.00 38.49 5.19
1253 2283 3.244387 GGAGATGAAGGAACTATGGGCTC 60.244 52.174 0.00 0.00 38.49 4.70
1254 2284 2.366916 AGATGAAGGAACTATGGGCTCG 59.633 50.000 0.00 0.00 38.49 5.03
1255 2285 0.830648 TGAAGGAACTATGGGCTCGG 59.169 55.000 0.00 0.00 38.49 4.63
1256 2286 0.533085 GAAGGAACTATGGGCTCGGC 60.533 60.000 0.00 0.00 38.49 5.54
1257 2287 1.271840 AAGGAACTATGGGCTCGGCA 61.272 55.000 0.00 0.00 38.49 5.69
1258 2288 1.523938 GGAACTATGGGCTCGGCAC 60.524 63.158 0.00 0.00 0.00 5.01
1426 2463 3.091545 GTCTTCTGGAAATCATGGCCAA 58.908 45.455 10.96 0.00 0.00 4.52
1435 2475 0.322816 ATCATGGCCAAGCAACGACT 60.323 50.000 10.96 0.00 0.00 4.18
1436 2476 1.210931 CATGGCCAAGCAACGACTG 59.789 57.895 10.96 0.00 0.00 3.51
1439 2486 1.675641 GGCCAAGCAACGACTGGAT 60.676 57.895 0.00 0.00 0.00 3.41
1447 2494 0.671472 CAACGACTGGATGCTGCTGA 60.671 55.000 0.00 0.00 0.00 4.26
1460 2507 2.736995 GCTGAACGCGGCAGTGTA 60.737 61.111 25.24 0.00 45.91 2.90
1461 2508 2.100631 GCTGAACGCGGCAGTGTAT 61.101 57.895 25.24 0.00 45.91 2.29
1491 2538 4.141869 GCCATTGGTATCCTCAAATGCTTT 60.142 41.667 4.26 0.00 0.00 3.51
1494 2541 5.643379 TTGGTATCCTCAAATGCTTTGAC 57.357 39.130 7.09 0.46 44.21 3.18
1495 2542 4.016444 TGGTATCCTCAAATGCTTTGACC 58.984 43.478 7.09 7.79 44.21 4.02
1500 2547 1.614903 CTCAAATGCTTTGACCAGCCA 59.385 47.619 7.09 0.00 44.21 4.75
1590 2710 5.180117 ACACACACATAAGCTCAAGATTGAC 59.820 40.000 0.00 0.00 32.90 3.18
1684 2804 3.197116 ACCGGTGGACTTTACTCCTTATG 59.803 47.826 6.12 0.00 0.00 1.90
1826 2946 3.709587 TCCTACTCCTCTACACCAAAGG 58.290 50.000 0.00 0.00 0.00 3.11
1864 2984 3.058846 GGCTTCTCTCGGACAAGTTTTTC 60.059 47.826 0.00 0.00 0.00 2.29
1925 3059 6.676943 GCGCAACTAGCAGGAATATTTGTTTA 60.677 38.462 0.30 0.00 46.13 2.01
1928 3062 9.237846 GCAACTAGCAGGAATATTTGTTTATTC 57.762 33.333 0.00 0.00 44.79 1.75
1967 3120 2.936919 TACATTCCAGCCATAGCCTG 57.063 50.000 0.00 0.00 41.25 4.85
2060 3213 1.065199 TGCTGCATTGGAGGTTCTAGG 60.065 52.381 7.33 0.00 0.00 3.02
2079 3232 1.087771 GCCCGGTCCTAACGAACATG 61.088 60.000 0.00 0.00 0.00 3.21
2131 3284 4.943705 GGTCAACAGATATGGTGTCAACAT 59.056 41.667 8.74 8.74 0.00 2.71
2133 3286 6.767902 GGTCAACAGATATGGTGTCAACATAT 59.232 38.462 21.02 21.02 42.53 1.78
2135 3288 7.495606 GTCAACAGATATGGTGTCAACATATGA 59.504 37.037 24.92 15.39 40.57 2.15
2202 3418 0.534203 TCCTTGTCCGCAACAGGAAC 60.534 55.000 0.49 0.00 42.77 3.62
2331 3547 2.615912 GCTCCAGTATGTGAAAGATGGC 59.384 50.000 0.00 0.00 0.00 4.40
2528 3747 2.156917 TGTATCTCGTTCTCACCACGT 58.843 47.619 0.00 0.00 38.81 4.49
2564 3798 6.706069 CGCAAGATTCATGTCCTCATGCTTA 61.706 44.000 14.92 0.00 45.20 3.09
2565 3799 7.947612 CGCAAGATTCATGTCCTCATGCTTAT 61.948 42.308 14.92 0.00 45.20 1.73
2566 3800 9.826617 CGCAAGATTCATGTCCTCATGCTTATG 62.827 44.444 14.92 0.00 45.20 1.90
3115 4390 1.825281 CGGAGGAGAGCATGGGGATC 61.825 65.000 0.00 0.00 0.00 3.36
3140 4424 3.436015 CCTTCAAGTTCTCATGTCAGCAG 59.564 47.826 0.00 0.00 0.00 4.24
3175 4459 2.562635 CAGCTGGTCCATCAAGATCAG 58.437 52.381 5.57 0.00 46.04 2.90
3268 4573 3.310774 CACTATGATGTTTCTGGAAGCCG 59.689 47.826 0.00 0.00 0.00 5.52
3281 4586 3.417275 AAGCCGATCCGACTCTGCG 62.417 63.158 0.00 0.00 31.47 5.18
3313 4708 5.122869 GCTCTCTTTGCTTTCATATGTGTGA 59.877 40.000 1.90 0.00 0.00 3.58
3568 5022 7.112452 TCATTCTTCTTACTGATTCGGATCA 57.888 36.000 6.16 6.16 39.92 2.92
3600 5054 3.502119 AAGGGAGAGAGCAGTCTTTCTCT 60.502 47.826 11.68 11.68 44.86 3.10
3618 5072 7.886970 TCTTTCTCTTTGTCCATCATCAAGAAT 59.113 33.333 0.00 0.00 0.00 2.40
3619 5073 9.170734 CTTTCTCTTTGTCCATCATCAAGAATA 57.829 33.333 0.00 0.00 0.00 1.75
3620 5074 9.690913 TTTCTCTTTGTCCATCATCAAGAATAT 57.309 29.630 0.00 0.00 0.00 1.28
3621 5075 8.672823 TCTCTTTGTCCATCATCAAGAATATG 57.327 34.615 0.00 0.00 0.00 1.78
3622 5076 7.228108 TCTCTTTGTCCATCATCAAGAATATGC 59.772 37.037 0.00 0.00 0.00 3.14
3623 5077 6.829811 TCTTTGTCCATCATCAAGAATATGCA 59.170 34.615 0.00 0.00 0.00 3.96
3624 5078 7.339976 TCTTTGTCCATCATCAAGAATATGCAA 59.660 33.333 0.00 0.00 0.00 4.08
3625 5079 7.591421 TTGTCCATCATCAAGAATATGCAAT 57.409 32.000 0.00 0.00 0.00 3.56
3626 5080 8.694581 TTGTCCATCATCAAGAATATGCAATA 57.305 30.769 0.00 0.00 0.00 1.90
3627 5081 8.331730 TGTCCATCATCAAGAATATGCAATAG 57.668 34.615 0.00 0.00 28.50 1.73
3665 5119 6.100004 TCATCATCGGTTACTTTCTTCAGTC 58.900 40.000 0.00 0.00 0.00 3.51
3735 7214 3.805971 GCTCATTGCTCTGTTTGCTTTTT 59.194 39.130 0.00 0.00 38.95 1.94
3838 7718 5.954349 CGAATACAGCGAAGACTTTGAAATC 59.046 40.000 6.62 0.00 0.00 2.17
3846 7726 6.073331 AGCGAAGACTTTGAAATCTCTTCTTG 60.073 38.462 16.86 8.62 37.54 3.02
3869 7749 1.829222 CATGAAGGCTTCCTGGCAAAT 59.171 47.619 23.68 6.48 44.55 2.32
3870 7750 2.897271 TGAAGGCTTCCTGGCAAATA 57.103 45.000 23.68 0.00 44.55 1.40
3871 7751 2.446435 TGAAGGCTTCCTGGCAAATAC 58.554 47.619 23.68 0.00 44.55 1.89
3872 7752 2.224992 TGAAGGCTTCCTGGCAAATACA 60.225 45.455 23.68 0.00 44.55 2.29
3873 7753 2.134789 AGGCTTCCTGGCAAATACAG 57.865 50.000 0.00 0.00 44.55 2.74
3892 7772 9.925268 AAATACAGTAGTTTTTAGTTGTCAACG 57.075 29.630 10.02 0.00 36.23 4.10
3894 7774 6.768078 ACAGTAGTTTTTAGTTGTCAACGTG 58.232 36.000 10.02 0.34 36.23 4.49
3895 7775 6.591062 ACAGTAGTTTTTAGTTGTCAACGTGA 59.409 34.615 10.02 0.00 36.23 4.35
3907 7787 4.313522 GTCAACGTGACAATGTGATCTC 57.686 45.455 11.62 0.00 46.22 2.75
3908 7788 3.123621 GTCAACGTGACAATGTGATCTCC 59.876 47.826 11.62 0.00 46.22 3.71
3909 7789 1.996292 ACGTGACAATGTGATCTCCG 58.004 50.000 0.00 0.00 0.00 4.63
3910 7790 0.647410 CGTGACAATGTGATCTCCGC 59.353 55.000 0.00 0.00 0.00 5.54
3911 7791 1.725641 GTGACAATGTGATCTCCGCA 58.274 50.000 0.00 0.00 39.93 5.69
3912 7792 1.662629 GTGACAATGTGATCTCCGCAG 59.337 52.381 0.00 0.00 38.86 5.18
3914 7794 1.929836 GACAATGTGATCTCCGCAGAC 59.070 52.381 0.00 0.00 38.86 3.51
3915 7795 1.552337 ACAATGTGATCTCCGCAGACT 59.448 47.619 0.00 0.00 38.86 3.24
3916 7796 2.200067 CAATGTGATCTCCGCAGACTC 58.800 52.381 0.00 0.00 38.86 3.36
3919 7799 1.015109 GTGATCTCCGCAGACTCGTA 58.985 55.000 0.00 0.00 0.00 3.43
3921 7801 1.604278 TGATCTCCGCAGACTCGTATG 59.396 52.381 0.00 0.00 0.00 2.39
3922 7802 1.874231 GATCTCCGCAGACTCGTATGA 59.126 52.381 0.00 0.00 0.00 2.15
3923 7803 1.015109 TCTCCGCAGACTCGTATGAC 58.985 55.000 0.00 0.00 0.00 3.06
3924 7804 0.029567 CTCCGCAGACTCGTATGACC 59.970 60.000 0.00 0.00 0.00 4.02
3926 7806 1.298413 CGCAGACTCGTATGACCGG 60.298 63.158 0.00 0.00 0.00 5.28
3929 7809 0.100682 CAGACTCGTATGACCGGGTG 59.899 60.000 3.30 0.00 42.70 4.61
3930 7810 1.035932 AGACTCGTATGACCGGGTGG 61.036 60.000 3.30 0.00 42.70 4.61
3931 7811 2.012902 GACTCGTATGACCGGGTGGG 62.013 65.000 3.30 0.00 42.70 4.61
3944 7824 2.671963 GTGGGCTCACCGGAAACC 60.672 66.667 9.46 3.37 44.64 3.27
3945 7825 3.961414 TGGGCTCACCGGAAACCC 61.961 66.667 9.46 14.16 44.64 4.11
3946 7826 3.961414 GGGCTCACCGGAAACCCA 61.961 66.667 9.46 0.00 38.70 4.51
3947 7827 2.671963 GGCTCACCGGAAACCCAC 60.672 66.667 9.46 0.00 0.00 4.61
3948 7828 2.430367 GCTCACCGGAAACCCACT 59.570 61.111 9.46 0.00 0.00 4.00
3949 7829 1.671379 GCTCACCGGAAACCCACTC 60.671 63.158 9.46 0.00 0.00 3.51
3950 7830 2.058675 CTCACCGGAAACCCACTCT 58.941 57.895 9.46 0.00 0.00 3.24
3951 7831 0.320771 CTCACCGGAAACCCACTCTG 60.321 60.000 9.46 0.00 0.00 3.35
3954 7834 0.763223 ACCGGAAACCCACTCTGACT 60.763 55.000 9.46 0.00 0.00 3.41
3955 7835 0.037232 CCGGAAACCCACTCTGACTC 60.037 60.000 0.00 0.00 0.00 3.36
3958 7838 1.609320 GGAAACCCACTCTGACTCTGC 60.609 57.143 0.00 0.00 0.00 4.26
3959 7839 1.346068 GAAACCCACTCTGACTCTGCT 59.654 52.381 0.00 0.00 0.00 4.24
3960 7840 0.972883 AACCCACTCTGACTCTGCTC 59.027 55.000 0.00 0.00 0.00 4.26
3963 7843 0.246086 CCACTCTGACTCTGCTCACC 59.754 60.000 0.00 0.00 0.00 4.02
3965 7845 1.067706 CACTCTGACTCTGCTCACCAG 60.068 57.143 0.00 0.00 43.17 4.00
3974 7854 2.820059 CTGCTCACCAGAACACAGTA 57.180 50.000 0.00 0.00 44.64 2.74
3975 7855 2.681706 CTGCTCACCAGAACACAGTAG 58.318 52.381 0.00 0.00 44.64 2.57
3976 7856 2.297315 CTGCTCACCAGAACACAGTAGA 59.703 50.000 0.00 0.00 44.64 2.59
3977 7857 2.698274 TGCTCACCAGAACACAGTAGAA 59.302 45.455 0.00 0.00 0.00 2.10
3978 7858 3.133901 TGCTCACCAGAACACAGTAGAAA 59.866 43.478 0.00 0.00 0.00 2.52
3979 7859 4.127171 GCTCACCAGAACACAGTAGAAAA 58.873 43.478 0.00 0.00 0.00 2.29
3980 7860 4.574828 GCTCACCAGAACACAGTAGAAAAA 59.425 41.667 0.00 0.00 0.00 1.94
3981 7861 5.504173 GCTCACCAGAACACAGTAGAAAAAC 60.504 44.000 0.00 0.00 0.00 2.43
3982 7862 5.492895 TCACCAGAACACAGTAGAAAAACA 58.507 37.500 0.00 0.00 0.00 2.83
3983 7863 5.584649 TCACCAGAACACAGTAGAAAAACAG 59.415 40.000 0.00 0.00 0.00 3.16
3984 7864 5.584649 CACCAGAACACAGTAGAAAAACAGA 59.415 40.000 0.00 0.00 0.00 3.41
3985 7865 5.817816 ACCAGAACACAGTAGAAAAACAGAG 59.182 40.000 0.00 0.00 0.00 3.35
3986 7866 5.817816 CCAGAACACAGTAGAAAAACAGAGT 59.182 40.000 0.00 0.00 0.00 3.24
3988 7868 5.817816 AGAACACAGTAGAAAAACAGAGTGG 59.182 40.000 0.00 0.00 0.00 4.00
3989 7869 3.877508 ACACAGTAGAAAAACAGAGTGGC 59.122 43.478 0.00 0.00 0.00 5.01
3990 7870 3.251004 CACAGTAGAAAAACAGAGTGGCC 59.749 47.826 0.00 0.00 0.00 5.36
3991 7871 2.480419 CAGTAGAAAAACAGAGTGGCCG 59.520 50.000 0.00 0.00 0.00 6.13
3992 7872 1.197036 GTAGAAAAACAGAGTGGCCGC 59.803 52.381 8.71 8.71 0.00 6.53
3993 7873 1.172812 AGAAAAACAGAGTGGCCGCC 61.173 55.000 14.07 1.04 0.00 6.13
3994 7874 2.458006 GAAAAACAGAGTGGCCGCCG 62.458 60.000 14.07 4.38 0.00 6.46
4012 7892 3.123620 CTGGCGCAAGAGACAGGC 61.124 66.667 5.65 0.00 43.02 4.85
4013 7893 3.889134 CTGGCGCAAGAGACAGGCA 62.889 63.158 5.65 0.00 43.02 4.75
4014 7894 3.123620 GGCGCAAGAGACAGGCAG 61.124 66.667 10.83 0.00 43.02 4.85
4016 7896 2.345244 CGCAAGAGACAGGCAGGT 59.655 61.111 0.00 0.00 43.02 4.00
4017 7897 1.739562 CGCAAGAGACAGGCAGGTC 60.740 63.158 1.53 1.53 43.02 3.85
4018 7898 1.739562 GCAAGAGACAGGCAGGTCG 60.740 63.158 4.06 0.00 42.62 4.79
4019 7899 1.739562 CAAGAGACAGGCAGGTCGC 60.740 63.158 5.22 5.22 42.62 5.19
4020 7900 2.210013 AAGAGACAGGCAGGTCGCA 61.210 57.895 13.56 0.00 45.17 5.10
4021 7901 2.125753 GAGACAGGCAGGTCGCAG 60.126 66.667 7.88 0.00 45.17 5.18
4022 7902 2.919856 AGACAGGCAGGTCGCAGT 60.920 61.111 4.06 0.00 45.17 4.40
4023 7903 1.595993 GAGACAGGCAGGTCGCAGTA 61.596 60.000 7.88 0.00 45.17 2.74
4024 7904 1.153745 GACAGGCAGGTCGCAGTAG 60.154 63.158 0.00 0.00 45.17 2.57
4025 7905 2.510238 CAGGCAGGTCGCAGTAGC 60.510 66.667 0.00 0.00 45.17 3.58
4026 7906 3.775654 AGGCAGGTCGCAGTAGCC 61.776 66.667 0.00 0.00 45.17 3.93
4029 7909 2.716017 GCAGGTCGCAGTAGCCTCT 61.716 63.158 0.00 0.00 41.79 3.69
4030 7910 1.435515 CAGGTCGCAGTAGCCTCTC 59.564 63.158 0.00 0.00 37.52 3.20
4032 7912 0.750182 AGGTCGCAGTAGCCTCTCTC 60.750 60.000 0.00 0.00 37.52 3.20
4034 7914 2.025441 CGCAGTAGCCTCTCTCGC 59.975 66.667 0.00 0.00 37.52 5.03
4039 7919 2.835431 TAGCCTCTCTCGCCAGCC 60.835 66.667 0.00 0.00 0.00 4.85
4042 7922 3.535962 CCTCTCTCGCCAGCCCTC 61.536 72.222 0.00 0.00 0.00 4.30
4044 7924 3.071206 TCTCTCGCCAGCCCTCAC 61.071 66.667 0.00 0.00 0.00 3.51
4045 7925 3.073735 CTCTCGCCAGCCCTCACT 61.074 66.667 0.00 0.00 0.00 3.41
4046 7926 2.604686 TCTCGCCAGCCCTCACTT 60.605 61.111 0.00 0.00 0.00 3.16
4047 7927 2.435586 CTCGCCAGCCCTCACTTG 60.436 66.667 0.00 0.00 0.00 3.16
4049 7929 2.435586 CGCCAGCCCTCACTTGAG 60.436 66.667 0.00 0.00 41.71 3.02
4051 7931 1.606531 GCCAGCCCTCACTTGAGAT 59.393 57.895 7.87 0.00 44.74 2.75
4052 7932 0.833287 GCCAGCCCTCACTTGAGATA 59.167 55.000 7.87 0.00 44.74 1.98
4053 7933 1.474143 GCCAGCCCTCACTTGAGATAC 60.474 57.143 7.87 0.00 44.74 2.24
4054 7934 2.114616 CCAGCCCTCACTTGAGATACT 58.885 52.381 7.87 0.00 44.74 2.12
4055 7935 2.102252 CCAGCCCTCACTTGAGATACTC 59.898 54.545 7.87 0.00 44.74 2.59
4058 7938 4.586421 CAGCCCTCACTTGAGATACTCATA 59.414 45.833 7.87 0.00 44.74 2.15
4061 7941 6.328672 AGCCCTCACTTGAGATACTCATAAAT 59.671 38.462 7.87 0.00 44.74 1.40
4063 7943 7.172361 GCCCTCACTTGAGATACTCATAAATTC 59.828 40.741 7.87 0.00 44.74 2.17
4064 7944 8.206867 CCCTCACTTGAGATACTCATAAATTCA 58.793 37.037 7.87 0.00 44.74 2.57
4066 7946 9.591792 CTCACTTGAGATACTCATAAATTCACA 57.408 33.333 0.00 0.00 44.74 3.58
4067 7947 9.942850 TCACTTGAGATACTCATAAATTCACAA 57.057 29.630 2.30 0.00 40.39 3.33
4068 7948 9.979270 CACTTGAGATACTCATAAATTCACAAC 57.021 33.333 2.30 0.00 40.39 3.32
4071 7951 9.942850 TTGAGATACTCATAAATTCACAACTCA 57.057 29.630 2.30 0.00 40.39 3.41
4073 7953 9.371136 GAGATACTCATAAATTCACAACTCACA 57.629 33.333 0.00 0.00 0.00 3.58
4074 7954 9.725019 AGATACTCATAAATTCACAACTCACAA 57.275 29.630 0.00 0.00 0.00 3.33
4075 7955 9.979270 GATACTCATAAATTCACAACTCACAAG 57.021 33.333 0.00 0.00 0.00 3.16
4076 7956 7.206981 ACTCATAAATTCACAACTCACAAGG 57.793 36.000 0.00 0.00 0.00 3.61
4077 7957 6.012658 TCATAAATTCACAACTCACAAGGC 57.987 37.500 0.00 0.00 0.00 4.35
4078 7958 5.769662 TCATAAATTCACAACTCACAAGGCT 59.230 36.000 0.00 0.00 0.00 4.58
4079 7959 6.939730 TCATAAATTCACAACTCACAAGGCTA 59.060 34.615 0.00 0.00 0.00 3.93
4080 7960 7.446931 TCATAAATTCACAACTCACAAGGCTAA 59.553 33.333 0.00 0.00 0.00 3.09
4081 7961 6.463995 AAATTCACAACTCACAAGGCTAAA 57.536 33.333 0.00 0.00 0.00 1.85
4082 7962 6.655078 AATTCACAACTCACAAGGCTAAAT 57.345 33.333 0.00 0.00 0.00 1.40
4084 7964 6.463995 TTCACAACTCACAAGGCTAAATTT 57.536 33.333 0.00 0.00 0.00 1.82
4085 7965 6.072112 TCACAACTCACAAGGCTAAATTTC 57.928 37.500 0.00 0.00 0.00 2.17
4086 7966 5.827797 TCACAACTCACAAGGCTAAATTTCT 59.172 36.000 0.00 0.00 0.00 2.52
4088 7968 5.594317 ACAACTCACAAGGCTAAATTTCTGT 59.406 36.000 0.00 0.00 0.00 3.41
4089 7969 5.695851 ACTCACAAGGCTAAATTTCTGTG 57.304 39.130 6.85 6.85 0.00 3.66
4090 7970 4.520492 ACTCACAAGGCTAAATTTCTGTGG 59.480 41.667 11.97 6.73 0.00 4.17
4091 7971 3.255642 TCACAAGGCTAAATTTCTGTGGC 59.744 43.478 11.97 0.00 0.00 5.01
4092 7972 3.256631 CACAAGGCTAAATTTCTGTGGCT 59.743 43.478 5.53 0.00 35.02 4.75
4093 7973 3.256631 ACAAGGCTAAATTTCTGTGGCTG 59.743 43.478 0.00 0.94 33.83 4.85
4094 7974 3.439857 AGGCTAAATTTCTGTGGCTGA 57.560 42.857 0.00 0.00 32.33 4.26
4095 7975 3.973425 AGGCTAAATTTCTGTGGCTGAT 58.027 40.909 0.00 0.00 32.33 2.90
4096 7976 3.950395 AGGCTAAATTTCTGTGGCTGATC 59.050 43.478 0.00 0.00 32.33 2.92
4097 7977 3.950395 GGCTAAATTTCTGTGGCTGATCT 59.050 43.478 0.00 0.00 0.00 2.75
4098 7978 4.400567 GGCTAAATTTCTGTGGCTGATCTT 59.599 41.667 0.00 0.00 0.00 2.40
4099 7979 5.338365 GCTAAATTTCTGTGGCTGATCTTG 58.662 41.667 0.00 0.00 0.00 3.02
4100 7980 4.796038 AAATTTCTGTGGCTGATCTTGG 57.204 40.909 0.00 0.00 0.00 3.61
4102 7982 4.574674 ATTTCTGTGGCTGATCTTGGTA 57.425 40.909 0.00 0.00 0.00 3.25
4103 7983 3.616956 TTCTGTGGCTGATCTTGGTAG 57.383 47.619 0.00 0.00 0.00 3.18
4104 7984 1.833630 TCTGTGGCTGATCTTGGTAGG 59.166 52.381 0.00 0.00 0.00 3.18
4105 7985 1.833630 CTGTGGCTGATCTTGGTAGGA 59.166 52.381 0.00 0.00 0.00 2.94
4106 7986 1.555075 TGTGGCTGATCTTGGTAGGAC 59.445 52.381 0.00 0.00 0.00 3.85
4107 7987 1.555075 GTGGCTGATCTTGGTAGGACA 59.445 52.381 0.00 0.00 0.00 4.02
4108 7988 1.555075 TGGCTGATCTTGGTAGGACAC 59.445 52.381 0.00 0.00 0.00 3.67
4120 8000 3.906720 GTAGGACACCATGCTTTCCTA 57.093 47.619 9.33 9.33 39.33 2.94
4123 8003 4.322057 AGGACACCATGCTTTCCTAAAT 57.678 40.909 5.63 0.00 36.67 1.40
4124 8004 4.677182 AGGACACCATGCTTTCCTAAATT 58.323 39.130 5.63 0.00 36.67 1.82
4125 8005 5.086621 AGGACACCATGCTTTCCTAAATTT 58.913 37.500 5.63 0.00 36.67 1.82
4127 8007 6.897413 AGGACACCATGCTTTCCTAAATTTAT 59.103 34.615 0.00 0.00 36.67 1.40
4129 8009 7.112452 ACACCATGCTTTCCTAAATTTATCC 57.888 36.000 0.00 0.00 0.00 2.59
4130 8010 6.897413 ACACCATGCTTTCCTAAATTTATCCT 59.103 34.615 0.00 0.00 0.00 3.24
4131 8011 7.147846 ACACCATGCTTTCCTAAATTTATCCTG 60.148 37.037 0.00 0.00 0.00 3.86
4132 8012 6.324770 ACCATGCTTTCCTAAATTTATCCTGG 59.675 38.462 0.00 0.00 0.00 4.45
4134 8014 6.773976 TGCTTTCCTAAATTTATCCTGGTG 57.226 37.500 0.00 0.00 0.00 4.17
4135 8015 6.489603 TGCTTTCCTAAATTTATCCTGGTGA 58.510 36.000 0.00 0.00 0.00 4.02
4137 8017 6.828785 GCTTTCCTAAATTTATCCTGGTGAGA 59.171 38.462 0.00 0.00 0.00 3.27
4139 8019 9.413734 CTTTCCTAAATTTATCCTGGTGAGATT 57.586 33.333 0.00 0.00 0.00 2.40
4148 8028 5.848286 ATCCTGGTGAGATTATTATGGCA 57.152 39.130 0.00 0.00 0.00 4.92
4150 8030 6.204852 TCCTGGTGAGATTATTATGGCATT 57.795 37.500 4.78 0.00 0.00 3.56
4151 8031 6.240894 TCCTGGTGAGATTATTATGGCATTC 58.759 40.000 4.78 0.00 0.00 2.67
4152 8032 6.005823 CCTGGTGAGATTATTATGGCATTCA 58.994 40.000 4.78 0.00 0.00 2.57
4153 8033 6.491062 CCTGGTGAGATTATTATGGCATTCAA 59.509 38.462 4.78 0.00 0.00 2.69
4154 8034 7.275888 TGGTGAGATTATTATGGCATTCAAC 57.724 36.000 4.78 4.64 0.00 3.18
4156 8036 6.265196 GGTGAGATTATTATGGCATTCAACCA 59.735 38.462 4.78 0.00 42.61 3.67
4157 8037 7.141363 GTGAGATTATTATGGCATTCAACCAC 58.859 38.462 4.78 3.41 40.82 4.16
4158 8038 7.013655 GTGAGATTATTATGGCATTCAACCACT 59.986 37.037 4.78 0.00 40.82 4.00
4160 8040 8.995027 AGATTATTATGGCATTCAACCACTAA 57.005 30.769 4.78 0.00 40.82 2.24
4162 8042 9.463443 GATTATTATGGCATTCAACCACTAAAC 57.537 33.333 4.78 0.00 40.82 2.01
4163 8043 5.652994 TTATGGCATTCAACCACTAAACC 57.347 39.130 4.78 0.00 40.82 3.27
4164 8044 2.950781 TGGCATTCAACCACTAAACCA 58.049 42.857 0.00 0.00 30.29 3.67
4165 8045 2.625790 TGGCATTCAACCACTAAACCAC 59.374 45.455 0.00 0.00 30.29 4.16
4166 8046 2.625790 GGCATTCAACCACTAAACCACA 59.374 45.455 0.00 0.00 0.00 4.17
4167 8047 3.305335 GGCATTCAACCACTAAACCACAG 60.305 47.826 0.00 0.00 0.00 3.66
4168 8048 3.857010 GCATTCAACCACTAAACCACAGC 60.857 47.826 0.00 0.00 0.00 4.40
4169 8049 3.290948 TTCAACCACTAAACCACAGCT 57.709 42.857 0.00 0.00 0.00 4.24
4170 8050 3.290948 TCAACCACTAAACCACAGCTT 57.709 42.857 0.00 0.00 0.00 3.74
4171 8051 3.626930 TCAACCACTAAACCACAGCTTT 58.373 40.909 0.00 0.00 0.00 3.51
4172 8052 4.020543 TCAACCACTAAACCACAGCTTTT 58.979 39.130 0.00 0.00 0.00 2.27
4173 8053 4.111916 CAACCACTAAACCACAGCTTTTG 58.888 43.478 0.00 0.00 0.00 2.44
4174 8054 2.693074 ACCACTAAACCACAGCTTTTGG 59.307 45.455 9.28 9.28 40.32 3.28
4175 8055 2.545742 CCACTAAACCACAGCTTTTGGC 60.546 50.000 10.59 0.00 37.69 4.52
4177 8057 2.965147 ACTAAACCACAGCTTTTGGCAT 59.035 40.909 10.59 3.43 44.79 4.40
4178 8058 2.531522 AAACCACAGCTTTTGGCATC 57.468 45.000 10.59 0.00 44.79 3.91
4179 8059 1.708341 AACCACAGCTTTTGGCATCT 58.292 45.000 10.59 0.00 44.79 2.90
4182 8062 4.235079 ACCACAGCTTTTGGCATCTATA 57.765 40.909 10.59 0.00 44.79 1.31
4184 8064 3.316308 CCACAGCTTTTGGCATCTATACC 59.684 47.826 0.00 0.00 44.79 2.73
4185 8065 3.947196 CACAGCTTTTGGCATCTATACCA 59.053 43.478 0.00 0.00 44.79 3.25
4186 8066 4.398988 CACAGCTTTTGGCATCTATACCAA 59.601 41.667 0.00 0.00 44.11 3.67
4188 8068 5.658190 ACAGCTTTTGGCATCTATACCAATT 59.342 36.000 0.00 0.00 45.08 2.32
4189 8069 6.155049 ACAGCTTTTGGCATCTATACCAATTT 59.845 34.615 0.00 0.00 45.08 1.82
4190 8070 7.043565 CAGCTTTTGGCATCTATACCAATTTT 58.956 34.615 0.00 0.00 45.08 1.82
4191 8071 7.223387 CAGCTTTTGGCATCTATACCAATTTTC 59.777 37.037 0.00 0.00 45.08 2.29
4192 8072 7.041107 GCTTTTGGCATCTATACCAATTTTCA 58.959 34.615 0.00 0.00 45.08 2.69
4194 8074 9.603921 CTTTTGGCATCTATACCAATTTTCAAT 57.396 29.630 0.00 0.00 45.08 2.57
4195 8075 8.945481 TTTGGCATCTATACCAATTTTCAATG 57.055 30.769 0.00 0.00 45.08 2.82
4207 8087 8.592105 ACCAATTTTCAATGTACAATGTTCTG 57.408 30.769 10.64 3.42 0.00 3.02
4208 8088 8.420222 ACCAATTTTCAATGTACAATGTTCTGA 58.580 29.630 10.64 0.00 0.00 3.27
4209 8089 9.258826 CCAATTTTCAATGTACAATGTTCTGAA 57.741 29.630 10.64 5.56 0.00 3.02
4217 8097 9.726232 CAATGTACAATGTTCTGAATATTCTGG 57.274 33.333 18.86 11.15 0.00 3.86
4237 8117 9.739276 ATTCTGGTATAAAGTCAAATCAGTTGA 57.261 29.630 0.00 0.00 44.20 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 3.445450 GGAGGAAGAAGGGCAAGAATTTC 59.555 47.826 0.00 0.00 0.00 2.17
156 157 4.188462 CCTCATTACCGACAATGTGCTAA 58.812 43.478 0.00 0.00 37.23 3.09
836 838 6.756299 AAAGAAGAAGAGAAGATGCATTCC 57.244 37.500 0.00 0.00 0.00 3.01
853 859 5.215160 CCAATCGACAACCTGAAAAAGAAG 58.785 41.667 0.00 0.00 0.00 2.85
856 862 4.568152 ACCAATCGACAACCTGAAAAAG 57.432 40.909 0.00 0.00 0.00 2.27
883 889 2.805671 TGAATGCACTGACAGTAAACCG 59.194 45.455 8.02 0.00 0.00 4.44
887 893 2.799978 CACGTGAATGCACTGACAGTAA 59.200 45.455 10.90 0.00 42.93 2.24
888 894 2.403259 CACGTGAATGCACTGACAGTA 58.597 47.619 10.90 0.00 42.93 2.74
1018 2027 0.399949 TCCTCCCACCACTGAACAGT 60.400 55.000 1.32 1.32 43.61 3.55
1044 2053 1.802880 GCAATGACGAGGATGCGTAGT 60.803 52.381 0.00 0.00 45.72 2.73
1244 2274 0.671781 GCTATGTGCCGAGCCCATAG 60.672 60.000 17.58 17.58 40.52 2.23
1245 2275 1.371183 GCTATGTGCCGAGCCCATA 59.629 57.895 2.32 2.32 35.15 2.74
1246 2276 2.060567 ATGCTATGTGCCGAGCCCAT 62.061 55.000 0.38 0.38 42.00 4.00
1247 2277 2.745308 ATGCTATGTGCCGAGCCCA 61.745 57.895 0.00 0.00 42.00 5.36
1248 2278 2.111878 ATGCTATGTGCCGAGCCC 59.888 61.111 0.00 0.00 42.00 5.19
1249 2279 2.901292 GCATGCTATGTGCCGAGCC 61.901 63.158 11.37 0.00 42.00 4.70
1250 2280 1.890979 AGCATGCTATGTGCCGAGC 60.891 57.895 21.21 0.00 43.50 5.03
1251 2281 1.504647 CCAGCATGCTATGTGCCGAG 61.505 60.000 22.19 4.26 43.50 4.63
1252 2282 1.524393 CCAGCATGCTATGTGCCGA 60.524 57.895 22.19 0.00 43.50 5.54
1253 2283 1.504647 CTCCAGCATGCTATGTGCCG 61.505 60.000 22.19 5.88 43.50 5.69
1254 2284 1.793134 GCTCCAGCATGCTATGTGCC 61.793 60.000 22.19 8.16 43.50 5.01
1255 2285 0.818445 AGCTCCAGCATGCTATGTGC 60.818 55.000 22.19 23.83 45.16 4.57
1256 2286 0.945099 CAGCTCCAGCATGCTATGTG 59.055 55.000 22.19 15.80 45.16 3.21
1257 2287 0.545171 ACAGCTCCAGCATGCTATGT 59.455 50.000 22.19 16.38 45.16 2.29
1258 2288 1.333931 CAACAGCTCCAGCATGCTATG 59.666 52.381 22.19 14.88 45.16 2.23
1259 2289 1.064906 ACAACAGCTCCAGCATGCTAT 60.065 47.619 22.19 0.00 45.16 2.97
1260 2290 0.325933 ACAACAGCTCCAGCATGCTA 59.674 50.000 22.19 4.69 45.16 3.49
1261 2291 1.074423 ACAACAGCTCCAGCATGCT 59.926 52.632 16.30 16.30 45.16 3.79
1262 2292 1.211969 CACAACAGCTCCAGCATGC 59.788 57.895 10.51 10.51 45.16 4.06
1263 2293 1.592400 CCCACAACAGCTCCAGCATG 61.592 60.000 0.48 0.00 45.16 4.06
1264 2294 1.303888 CCCACAACAGCTCCAGCAT 60.304 57.895 0.48 0.00 45.16 3.79
1426 2463 2.037136 GCAGCATCCAGTCGTTGCT 61.037 57.895 0.00 0.00 46.35 3.91
1447 2494 0.246635 AAGAGATACACTGCCGCGTT 59.753 50.000 4.92 0.00 0.00 4.84
1456 2503 2.906354 ACCAATGGCGAAGAGATACAC 58.094 47.619 0.00 0.00 0.00 2.90
1458 2505 4.021016 AGGATACCAATGGCGAAGAGATAC 60.021 45.833 0.00 0.00 37.17 2.24
1460 2507 2.975489 AGGATACCAATGGCGAAGAGAT 59.025 45.455 0.00 0.00 37.17 2.75
1461 2508 2.365617 GAGGATACCAATGGCGAAGAGA 59.634 50.000 0.00 0.00 37.17 3.10
1590 2710 6.349944 CCTTGTCAATGAAATCTTCAAGAGGG 60.350 42.308 9.64 0.00 43.95 4.30
1684 2804 2.436417 TGCAAGGTCCACAAATAGCTC 58.564 47.619 0.00 0.00 0.00 4.09
1826 2946 3.321968 AGAAGCCATGGAAAACACCTTTC 59.678 43.478 18.40 4.40 42.45 2.62
1864 2984 2.032680 TTTCGGGAAGCGAATAAGGG 57.967 50.000 0.00 0.00 0.00 3.95
1895 3015 1.048724 TCCTGCTAGTTGCGCCCTAT 61.049 55.000 4.18 0.00 46.63 2.57
1967 3120 2.490903 TCTCGGTTACTGTAGTGGAAGC 59.509 50.000 0.00 0.00 0.00 3.86
2060 3213 1.087771 CATGTTCGTTAGGACCGGGC 61.088 60.000 6.32 0.21 0.00 6.13
2079 3232 4.646572 AGAATTCTTCTGTGTCCCTTGTC 58.353 43.478 0.88 0.00 38.91 3.18
2113 3266 6.464892 CCCTCATATGTTGACACCATATCTGT 60.465 42.308 2.69 0.00 34.14 3.41
2131 3284 9.498039 CATATCATGATATATAGGCCCCTCATA 57.502 37.037 24.45 0.00 33.01 2.15
2133 3286 6.732390 CCATATCATGATATATAGGCCCCTCA 59.268 42.308 24.45 0.00 33.01 3.86
2135 3288 6.647861 ACCATATCATGATATATAGGCCCCT 58.352 40.000 24.45 6.71 33.01 4.79
2202 3418 3.484407 GACCCTCATCATCTTGGAATGG 58.516 50.000 0.00 0.00 0.00 3.16
2528 3747 0.320683 ATCTTGCGTGCACAGCAGTA 60.321 50.000 26.65 21.09 46.01 2.74
2575 3809 0.109132 CCGGATCTTTTGCACCAAGC 60.109 55.000 0.00 0.00 45.96 4.01
2576 3810 1.200020 GACCGGATCTTTTGCACCAAG 59.800 52.381 9.46 0.00 0.00 3.61
2577 3811 1.243902 GACCGGATCTTTTGCACCAA 58.756 50.000 9.46 0.00 0.00 3.67
2578 3812 0.109532 TGACCGGATCTTTTGCACCA 59.890 50.000 9.46 0.00 0.00 4.17
3115 4390 1.734465 GACATGAGAACTTGAAGGGCG 59.266 52.381 0.00 0.00 0.00 6.13
3140 4424 2.338785 GCTGCTTCCTCTTGGGCAC 61.339 63.158 0.00 0.00 34.39 5.01
3175 4459 4.778143 ACCTTCGGCGCCACCATC 62.778 66.667 28.98 0.00 39.03 3.51
3268 4573 0.807667 ATGCAACGCAGAGTCGGATC 60.808 55.000 0.00 0.00 43.65 3.36
3281 4586 2.719426 AGCAAAGAGAGCAATGCAAC 57.281 45.000 8.35 0.71 41.18 4.17
3347 4754 1.440708 AACGACACCGACAAAACACA 58.559 45.000 0.00 0.00 39.50 3.72
3568 5022 5.485708 ACTGCTCTCTCCCTTGTAAATTAGT 59.514 40.000 0.00 0.00 0.00 2.24
3600 5054 7.407393 TTGCATATTCTTGATGATGGACAAA 57.593 32.000 0.00 0.00 0.00 2.83
3620 5074 9.237187 TGATGAAAACTTAATGGTACTATTGCA 57.763 29.630 14.21 0.82 0.00 4.08
3624 5078 9.273016 CCGATGATGAAAACTTAATGGTACTAT 57.727 33.333 0.00 0.00 0.00 2.12
3625 5079 8.262227 ACCGATGATGAAAACTTAATGGTACTA 58.738 33.333 0.00 0.00 0.00 1.82
3626 5080 7.110155 ACCGATGATGAAAACTTAATGGTACT 58.890 34.615 0.00 0.00 0.00 2.73
3627 5081 7.316544 ACCGATGATGAAAACTTAATGGTAC 57.683 36.000 0.00 0.00 0.00 3.34
3648 5102 3.679824 AGGGACTGAAGAAAGTAACCG 57.320 47.619 0.00 0.00 37.18 4.44
3665 5119 1.270550 GAGACACAAACAATGGCAGGG 59.729 52.381 0.00 0.00 0.00 4.45
3689 5143 3.600388 ACGAGCATGGAAGAAAGTAAGG 58.400 45.455 0.00 0.00 0.00 2.69
3838 7718 3.347077 AGCCTTCATGGTCAAGAAGAG 57.653 47.619 15.00 8.13 42.95 2.85
3869 7749 7.758980 TCACGTTGACAACTAAAAACTACTGTA 59.241 33.333 16.02 0.00 0.00 2.74
3870 7750 6.591062 TCACGTTGACAACTAAAAACTACTGT 59.409 34.615 16.02 0.00 0.00 3.55
3871 7751 6.898189 GTCACGTTGACAACTAAAAACTACTG 59.102 38.462 16.02 0.00 46.22 2.74
3872 7752 6.997222 GTCACGTTGACAACTAAAAACTACT 58.003 36.000 16.02 0.00 46.22 2.57
3891 7771 0.647410 GCGGAGATCACATTGTCACG 59.353 55.000 0.00 0.00 0.00 4.35
3892 7772 1.662629 CTGCGGAGATCACATTGTCAC 59.337 52.381 0.00 0.00 0.00 3.67
3894 7774 1.929836 GTCTGCGGAGATCACATTGTC 59.070 52.381 10.72 0.00 0.00 3.18
3895 7775 1.552337 AGTCTGCGGAGATCACATTGT 59.448 47.619 10.72 0.00 0.00 2.71
3896 7776 2.200067 GAGTCTGCGGAGATCACATTG 58.800 52.381 10.72 0.00 0.00 2.82
3897 7777 1.202348 CGAGTCTGCGGAGATCACATT 60.202 52.381 10.72 0.00 0.00 2.71
3898 7778 0.383590 CGAGTCTGCGGAGATCACAT 59.616 55.000 10.72 0.00 0.00 3.21
3899 7779 0.960861 ACGAGTCTGCGGAGATCACA 60.961 55.000 10.72 0.00 35.12 3.58
3900 7780 1.015109 TACGAGTCTGCGGAGATCAC 58.985 55.000 10.72 4.01 35.12 3.06
3901 7781 1.604278 CATACGAGTCTGCGGAGATCA 59.396 52.381 10.72 0.00 35.12 2.92
3902 7782 1.874231 TCATACGAGTCTGCGGAGATC 59.126 52.381 10.72 7.99 35.12 2.75
3903 7783 1.604755 GTCATACGAGTCTGCGGAGAT 59.395 52.381 10.72 0.00 35.12 2.75
3905 7785 0.029567 GGTCATACGAGTCTGCGGAG 59.970 60.000 0.00 0.00 35.12 4.63
3906 7786 1.712018 CGGTCATACGAGTCTGCGGA 61.712 60.000 0.00 0.00 35.47 5.54
3907 7787 1.298413 CGGTCATACGAGTCTGCGG 60.298 63.158 0.00 0.00 35.47 5.69
3908 7788 1.298413 CCGGTCATACGAGTCTGCG 60.298 63.158 0.00 0.00 35.47 5.18
3909 7789 1.065928 CCCGGTCATACGAGTCTGC 59.934 63.158 0.00 0.00 35.47 4.26
3910 7790 0.100682 CACCCGGTCATACGAGTCTG 59.899 60.000 0.00 0.00 35.47 3.51
3911 7791 1.035932 CCACCCGGTCATACGAGTCT 61.036 60.000 0.00 0.00 35.47 3.24
3912 7792 1.436336 CCACCCGGTCATACGAGTC 59.564 63.158 0.00 0.00 35.47 3.36
3914 7794 2.812499 CCCACCCGGTCATACGAG 59.188 66.667 0.00 0.00 35.47 4.18
3915 7795 3.463585 GCCCACCCGGTCATACGA 61.464 66.667 0.00 0.00 35.47 3.43
3916 7796 3.441011 GAGCCCACCCGGTCATACG 62.441 68.421 0.00 0.00 0.00 3.06
3919 7799 3.717294 GTGAGCCCACCCGGTCAT 61.717 66.667 0.00 0.00 37.33 3.06
3929 7809 3.961414 TGGGTTTCCGGTGAGCCC 61.961 66.667 20.13 20.13 37.77 5.19
3930 7810 2.671963 GTGGGTTTCCGGTGAGCC 60.672 66.667 17.37 17.37 35.24 4.70
3931 7811 1.671379 GAGTGGGTTTCCGGTGAGC 60.671 63.158 0.00 0.35 35.24 4.26
3932 7812 0.320771 CAGAGTGGGTTTCCGGTGAG 60.321 60.000 0.00 0.00 35.24 3.51
3934 7814 0.602905 GTCAGAGTGGGTTTCCGGTG 60.603 60.000 0.00 0.00 35.24 4.94
3935 7815 0.763223 AGTCAGAGTGGGTTTCCGGT 60.763 55.000 0.00 0.00 35.24 5.28
3936 7816 0.037232 GAGTCAGAGTGGGTTTCCGG 60.037 60.000 0.00 0.00 35.24 5.14
3937 7817 0.969894 AGAGTCAGAGTGGGTTTCCG 59.030 55.000 0.00 0.00 35.24 4.30
3938 7818 1.609320 GCAGAGTCAGAGTGGGTTTCC 60.609 57.143 0.00 0.00 0.00 3.13
3939 7819 1.346068 AGCAGAGTCAGAGTGGGTTTC 59.654 52.381 0.00 0.00 0.00 2.78
3940 7820 1.346068 GAGCAGAGTCAGAGTGGGTTT 59.654 52.381 0.00 0.00 0.00 3.27
3941 7821 0.972883 GAGCAGAGTCAGAGTGGGTT 59.027 55.000 0.00 0.00 0.00 4.11
3942 7822 0.178950 TGAGCAGAGTCAGAGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
3943 7823 0.246086 GTGAGCAGAGTCAGAGTGGG 59.754 60.000 0.00 0.00 0.00 4.61
3944 7824 0.246086 GGTGAGCAGAGTCAGAGTGG 59.754 60.000 0.00 0.00 0.00 4.00
3945 7825 0.964700 TGGTGAGCAGAGTCAGAGTG 59.035 55.000 0.00 0.00 0.00 3.51
3946 7826 1.202989 TCTGGTGAGCAGAGTCAGAGT 60.203 52.381 10.72 0.00 31.73 3.24
3947 7827 1.543607 TCTGGTGAGCAGAGTCAGAG 58.456 55.000 10.72 0.00 31.73 3.35
3948 7828 1.615883 GTTCTGGTGAGCAGAGTCAGA 59.384 52.381 14.43 0.00 33.30 3.27
3949 7829 1.342496 TGTTCTGGTGAGCAGAGTCAG 59.658 52.381 14.43 0.00 0.00 3.51
3950 7830 1.069204 GTGTTCTGGTGAGCAGAGTCA 59.931 52.381 14.43 14.29 34.16 3.41
3951 7831 1.069204 TGTGTTCTGGTGAGCAGAGTC 59.931 52.381 14.43 12.07 34.16 3.36
3954 7834 1.123077 ACTGTGTTCTGGTGAGCAGA 58.877 50.000 10.72 10.72 34.16 4.26
3955 7835 2.297315 TCTACTGTGTTCTGGTGAGCAG 59.703 50.000 5.07 5.07 34.16 4.24
3958 7838 5.584649 TGTTTTTCTACTGTGTTCTGGTGAG 59.415 40.000 0.00 0.00 0.00 3.51
3959 7839 5.492895 TGTTTTTCTACTGTGTTCTGGTGA 58.507 37.500 0.00 0.00 0.00 4.02
3960 7840 5.584649 TCTGTTTTTCTACTGTGTTCTGGTG 59.415 40.000 0.00 0.00 0.00 4.17
3963 7843 6.238211 CCACTCTGTTTTTCTACTGTGTTCTG 60.238 42.308 0.00 0.00 0.00 3.02
3965 7845 5.504173 GCCACTCTGTTTTTCTACTGTGTTC 60.504 44.000 0.00 0.00 0.00 3.18
3966 7846 4.335594 GCCACTCTGTTTTTCTACTGTGTT 59.664 41.667 0.00 0.00 0.00 3.32
3967 7847 3.877508 GCCACTCTGTTTTTCTACTGTGT 59.122 43.478 0.00 0.00 0.00 3.72
3968 7848 3.251004 GGCCACTCTGTTTTTCTACTGTG 59.749 47.826 0.00 0.00 0.00 3.66
3970 7850 2.480419 CGGCCACTCTGTTTTTCTACTG 59.520 50.000 2.24 0.00 0.00 2.74
3971 7851 2.767505 CGGCCACTCTGTTTTTCTACT 58.232 47.619 2.24 0.00 0.00 2.57
3972 7852 1.197036 GCGGCCACTCTGTTTTTCTAC 59.803 52.381 2.24 0.00 0.00 2.59
3974 7854 1.172812 GGCGGCCACTCTGTTTTTCT 61.173 55.000 15.62 0.00 0.00 2.52
3975 7855 1.285950 GGCGGCCACTCTGTTTTTC 59.714 57.895 15.62 0.00 0.00 2.29
3976 7856 2.551912 CGGCGGCCACTCTGTTTTT 61.552 57.895 20.71 0.00 0.00 1.94
3977 7857 2.978010 CGGCGGCCACTCTGTTTT 60.978 61.111 20.71 0.00 0.00 2.43
3994 7874 3.123620 CCTGTCTCTTGCGCCAGC 61.124 66.667 4.18 0.00 45.41 4.85
3995 7875 3.123620 GCCTGTCTCTTGCGCCAG 61.124 66.667 4.18 2.55 0.00 4.85
3996 7876 3.889134 CTGCCTGTCTCTTGCGCCA 62.889 63.158 4.18 0.00 0.00 5.69
3997 7877 3.123620 CTGCCTGTCTCTTGCGCC 61.124 66.667 4.18 0.00 0.00 6.53
3999 7879 1.739562 GACCTGCCTGTCTCTTGCG 60.740 63.158 0.00 0.00 32.39 4.85
4000 7880 1.739562 CGACCTGCCTGTCTCTTGC 60.740 63.158 1.82 0.00 32.97 4.01
4001 7881 1.739562 GCGACCTGCCTGTCTCTTG 60.740 63.158 0.00 0.00 37.76 3.02
4002 7882 2.164865 CTGCGACCTGCCTGTCTCTT 62.165 60.000 0.00 0.00 45.60 2.85
4003 7883 2.601666 TGCGACCTGCCTGTCTCT 60.602 61.111 0.00 0.00 45.60 3.10
4004 7884 1.595993 TACTGCGACCTGCCTGTCTC 61.596 60.000 0.00 0.00 45.60 3.36
4006 7886 1.153745 CTACTGCGACCTGCCTGTC 60.154 63.158 0.00 0.00 45.60 3.51
4008 7888 2.510238 GCTACTGCGACCTGCCTG 60.510 66.667 0.00 0.00 45.60 4.85
4009 7889 3.775654 GGCTACTGCGACCTGCCT 61.776 66.667 0.00 0.00 45.60 4.75
4012 7892 1.034838 AGAGAGGCTACTGCGACCTG 61.035 60.000 0.00 0.00 40.82 4.00
4013 7893 0.750182 GAGAGAGGCTACTGCGACCT 60.750 60.000 0.00 0.00 40.82 3.85
4014 7894 1.731093 GAGAGAGGCTACTGCGACC 59.269 63.158 0.00 0.00 40.82 4.79
4016 7896 2.473760 GCGAGAGAGGCTACTGCGA 61.474 63.158 0.00 0.00 40.82 5.10
4017 7897 2.025441 GCGAGAGAGGCTACTGCG 59.975 66.667 0.00 0.00 40.82 5.18
4018 7898 2.348605 CTGGCGAGAGAGGCTACTGC 62.349 65.000 0.00 0.00 37.59 4.40
4019 7899 1.732917 CTGGCGAGAGAGGCTACTG 59.267 63.158 0.00 0.00 37.59 2.74
4020 7900 2.124693 GCTGGCGAGAGAGGCTACT 61.125 63.158 0.00 0.00 37.59 2.57
4021 7901 2.415426 GCTGGCGAGAGAGGCTAC 59.585 66.667 0.00 0.00 37.59 3.58
4022 7902 2.835431 GGCTGGCGAGAGAGGCTA 60.835 66.667 0.00 0.00 37.59 3.93
4025 7905 3.535962 GAGGGCTGGCGAGAGAGG 61.536 72.222 0.00 0.00 0.00 3.69
4026 7906 2.757508 TGAGGGCTGGCGAGAGAG 60.758 66.667 0.00 0.00 0.00 3.20
4029 7909 2.604686 AAGTGAGGGCTGGCGAGA 60.605 61.111 0.00 0.00 0.00 4.04
4030 7910 2.435586 CAAGTGAGGGCTGGCGAG 60.436 66.667 0.00 0.00 0.00 5.03
4032 7912 2.249413 ATCTCAAGTGAGGGCTGGCG 62.249 60.000 8.42 0.00 42.30 5.69
4034 7914 2.102252 GAGTATCTCAAGTGAGGGCTGG 59.898 54.545 8.42 0.00 42.30 4.85
4039 7919 9.039870 GTGAATTTATGAGTATCTCAAGTGAGG 57.960 37.037 8.42 0.00 44.04 3.86
4040 7920 9.591792 TGTGAATTTATGAGTATCTCAAGTGAG 57.408 33.333 1.65 1.65 44.04 3.51
4041 7921 9.942850 TTGTGAATTTATGAGTATCTCAAGTGA 57.057 29.630 3.58 0.00 44.04 3.41
4042 7922 9.979270 GTTGTGAATTTATGAGTATCTCAAGTG 57.021 33.333 3.58 0.00 44.04 3.16
4045 7925 9.942850 TGAGTTGTGAATTTATGAGTATCTCAA 57.057 29.630 3.58 0.00 44.04 3.02
4046 7926 9.371136 GTGAGTTGTGAATTTATGAGTATCTCA 57.629 33.333 1.92 1.92 44.99 3.27
4047 7927 9.371136 TGTGAGTTGTGAATTTATGAGTATCTC 57.629 33.333 0.00 0.00 34.92 2.75
4049 7929 9.979270 CTTGTGAGTTGTGAATTTATGAGTATC 57.021 33.333 0.00 0.00 0.00 2.24
4051 7931 7.094805 GCCTTGTGAGTTGTGAATTTATGAGTA 60.095 37.037 0.00 0.00 0.00 2.59
4052 7932 6.294176 GCCTTGTGAGTTGTGAATTTATGAGT 60.294 38.462 0.00 0.00 0.00 3.41
4053 7933 6.072286 AGCCTTGTGAGTTGTGAATTTATGAG 60.072 38.462 0.00 0.00 0.00 2.90
4054 7934 5.769662 AGCCTTGTGAGTTGTGAATTTATGA 59.230 36.000 0.00 0.00 0.00 2.15
4055 7935 6.017400 AGCCTTGTGAGTTGTGAATTTATG 57.983 37.500 0.00 0.00 0.00 1.90
4058 7938 6.463995 TTTAGCCTTGTGAGTTGTGAATTT 57.536 33.333 0.00 0.00 0.00 1.82
4061 7941 6.321181 AGAAATTTAGCCTTGTGAGTTGTGAA 59.679 34.615 0.00 0.00 0.00 3.18
4063 7943 5.916883 CAGAAATTTAGCCTTGTGAGTTGTG 59.083 40.000 0.00 0.00 0.00 3.33
4064 7944 5.594317 ACAGAAATTTAGCCTTGTGAGTTGT 59.406 36.000 0.00 0.00 0.00 3.32
4066 7946 5.010012 CCACAGAAATTTAGCCTTGTGAGTT 59.990 40.000 15.18 0.00 0.00 3.01
4067 7947 4.520492 CCACAGAAATTTAGCCTTGTGAGT 59.480 41.667 15.18 0.00 0.00 3.41
4068 7948 4.616835 GCCACAGAAATTTAGCCTTGTGAG 60.617 45.833 15.18 9.67 0.00 3.51
4070 7950 3.256631 AGCCACAGAAATTTAGCCTTGTG 59.743 43.478 0.00 2.06 0.00 3.33
4071 7951 3.256631 CAGCCACAGAAATTTAGCCTTGT 59.743 43.478 0.00 0.00 0.00 3.16
4073 7953 3.766545 TCAGCCACAGAAATTTAGCCTT 58.233 40.909 0.00 0.00 0.00 4.35
4074 7954 3.439857 TCAGCCACAGAAATTTAGCCT 57.560 42.857 0.00 0.00 0.00 4.58
4075 7955 3.950395 AGATCAGCCACAGAAATTTAGCC 59.050 43.478 0.00 0.00 0.00 3.93
4076 7956 5.338365 CAAGATCAGCCACAGAAATTTAGC 58.662 41.667 0.00 0.00 0.00 3.09
4077 7957 5.416952 ACCAAGATCAGCCACAGAAATTTAG 59.583 40.000 0.00 0.00 0.00 1.85
4078 7958 5.324409 ACCAAGATCAGCCACAGAAATTTA 58.676 37.500 0.00 0.00 0.00 1.40
4079 7959 4.154942 ACCAAGATCAGCCACAGAAATTT 58.845 39.130 0.00 0.00 0.00 1.82
4080 7960 3.771216 ACCAAGATCAGCCACAGAAATT 58.229 40.909 0.00 0.00 0.00 1.82
4081 7961 3.446442 ACCAAGATCAGCCACAGAAAT 57.554 42.857 0.00 0.00 0.00 2.17
4082 7962 2.957402 ACCAAGATCAGCCACAGAAA 57.043 45.000 0.00 0.00 0.00 2.52
4084 7964 1.833630 CCTACCAAGATCAGCCACAGA 59.166 52.381 0.00 0.00 0.00 3.41
4085 7965 1.833630 TCCTACCAAGATCAGCCACAG 59.166 52.381 0.00 0.00 0.00 3.66
4086 7966 1.555075 GTCCTACCAAGATCAGCCACA 59.445 52.381 0.00 0.00 0.00 4.17
4088 7968 1.555075 GTGTCCTACCAAGATCAGCCA 59.445 52.381 0.00 0.00 0.00 4.75
4089 7969 2.317530 GTGTCCTACCAAGATCAGCC 57.682 55.000 0.00 0.00 0.00 4.85
4100 7980 2.789409 AGGAAAGCATGGTGTCCTAC 57.211 50.000 31.23 8.15 38.76 3.18
4102 7982 3.806949 TTTAGGAAAGCATGGTGTCCT 57.193 42.857 33.53 33.53 43.09 3.85
4103 7983 5.405935 AAATTTAGGAAAGCATGGTGTCC 57.594 39.130 24.25 24.25 0.00 4.02
4104 7984 7.068716 AGGATAAATTTAGGAAAGCATGGTGTC 59.931 37.037 6.53 6.53 0.00 3.67
4105 7985 6.897413 AGGATAAATTTAGGAAAGCATGGTGT 59.103 34.615 0.00 0.00 0.00 4.16
4106 7986 7.205297 CAGGATAAATTTAGGAAAGCATGGTG 58.795 38.462 0.00 0.00 0.00 4.17
4107 7987 6.324770 CCAGGATAAATTTAGGAAAGCATGGT 59.675 38.462 3.94 0.00 0.00 3.55
4108 7988 6.324770 ACCAGGATAAATTTAGGAAAGCATGG 59.675 38.462 5.54 5.54 0.00 3.66
4109 7989 7.068593 TCACCAGGATAAATTTAGGAAAGCATG 59.931 37.037 3.94 0.00 0.00 4.06
4110 7990 7.125391 TCACCAGGATAAATTTAGGAAAGCAT 58.875 34.615 3.94 0.00 0.00 3.79
4111 7991 6.489603 TCACCAGGATAAATTTAGGAAAGCA 58.510 36.000 3.94 0.00 0.00 3.91
4112 7992 6.828785 TCTCACCAGGATAAATTTAGGAAAGC 59.171 38.462 3.94 0.00 0.00 3.51
4113 7993 8.986929 ATCTCACCAGGATAAATTTAGGAAAG 57.013 34.615 3.94 3.61 0.00 2.62
4123 8003 7.754624 TGCCATAATAATCTCACCAGGATAAA 58.245 34.615 0.00 0.00 0.00 1.40
4124 8004 7.328404 TGCCATAATAATCTCACCAGGATAA 57.672 36.000 0.00 0.00 0.00 1.75
4125 8005 6.950860 TGCCATAATAATCTCACCAGGATA 57.049 37.500 0.00 0.00 0.00 2.59
4127 8007 5.848286 ATGCCATAATAATCTCACCAGGA 57.152 39.130 0.00 0.00 0.00 3.86
4129 8009 7.365741 GTTGAATGCCATAATAATCTCACCAG 58.634 38.462 0.00 0.00 0.00 4.00
4130 8010 6.265196 GGTTGAATGCCATAATAATCTCACCA 59.735 38.462 0.00 0.00 0.00 4.17
4131 8011 6.265196 TGGTTGAATGCCATAATAATCTCACC 59.735 38.462 0.00 0.00 0.00 4.02
4132 8012 7.013655 AGTGGTTGAATGCCATAATAATCTCAC 59.986 37.037 0.00 0.00 38.40 3.51
4134 8014 7.516198 AGTGGTTGAATGCCATAATAATCTC 57.484 36.000 0.00 0.00 38.40 2.75
4135 8015 8.995027 TTAGTGGTTGAATGCCATAATAATCT 57.005 30.769 0.00 0.00 38.40 2.40
4137 8017 8.421002 GGTTTAGTGGTTGAATGCCATAATAAT 58.579 33.333 0.00 0.00 38.40 1.28
4139 8019 6.892456 TGGTTTAGTGGTTGAATGCCATAATA 59.108 34.615 0.00 0.00 38.40 0.98
4144 8024 2.625790 GTGGTTTAGTGGTTGAATGCCA 59.374 45.455 0.00 0.00 0.00 4.92
4145 8025 2.625790 TGTGGTTTAGTGGTTGAATGCC 59.374 45.455 0.00 0.00 0.00 4.40
4148 8028 3.832527 AGCTGTGGTTTAGTGGTTGAAT 58.167 40.909 0.00 0.00 0.00 2.57
4150 8030 3.290948 AAGCTGTGGTTTAGTGGTTGA 57.709 42.857 0.00 0.00 0.00 3.18
4151 8031 4.111916 CAAAAGCTGTGGTTTAGTGGTTG 58.888 43.478 0.00 0.00 32.76 3.77
4152 8032 3.132111 CCAAAAGCTGTGGTTTAGTGGTT 59.868 43.478 8.30 0.00 32.76 3.67
4153 8033 2.693074 CCAAAAGCTGTGGTTTAGTGGT 59.307 45.455 8.30 0.00 32.76 4.16
4154 8034 2.545742 GCCAAAAGCTGTGGTTTAGTGG 60.546 50.000 16.12 1.76 38.50 4.00
4156 8036 2.383855 TGCCAAAAGCTGTGGTTTAGT 58.616 42.857 16.12 0.00 44.23 2.24
4157 8037 3.256631 AGATGCCAAAAGCTGTGGTTTAG 59.743 43.478 16.12 0.00 44.23 1.85
4158 8038 3.230134 AGATGCCAAAAGCTGTGGTTTA 58.770 40.909 16.12 5.94 44.23 2.01
4160 8040 1.708341 AGATGCCAAAAGCTGTGGTT 58.292 45.000 16.12 6.35 44.23 3.67
4162 8042 3.316308 GGTATAGATGCCAAAAGCTGTGG 59.684 47.826 11.61 11.61 44.23 4.17
4163 8043 3.947196 TGGTATAGATGCCAAAAGCTGTG 59.053 43.478 0.00 0.00 39.68 3.66
4164 8044 4.235079 TGGTATAGATGCCAAAAGCTGT 57.765 40.909 0.00 0.00 39.68 4.40
4172 8052 7.658525 ACATTGAAAATTGGTATAGATGCCA 57.341 32.000 0.00 0.00 40.94 4.92
4173 8053 8.629158 TGTACATTGAAAATTGGTATAGATGCC 58.371 33.333 0.00 0.00 0.00 4.40
4182 8062 8.420222 TCAGAACATTGTACATTGAAAATTGGT 58.580 29.630 21.38 0.00 0.00 3.67
4191 8071 9.726232 CCAGAATATTCAGAACATTGTACATTG 57.274 33.333 17.56 14.64 0.00 2.82
4192 8072 9.466497 ACCAGAATATTCAGAACATTGTACATT 57.534 29.630 17.56 0.00 0.00 2.71
4211 8091 9.739276 TCAACTGATTTGACTTTATACCAGAAT 57.261 29.630 0.00 0.00 39.45 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.