Multiple sequence alignment - TraesCS6D01G400000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G400000 chr6D 100.000 2639 0 0 1 2639 470046792 470049430 0.000000e+00 4874.0
1 TraesCS6D01G400000 chr6D 79.169 1709 235 54 362 2022 470103594 470101959 0.000000e+00 1072.0
2 TraesCS6D01G400000 chr6D 91.791 268 20 2 2167 2432 108673902 108674169 3.210000e-99 372.0
3 TraesCS6D01G400000 chr6D 81.287 171 21 5 1853 2021 470290730 470290891 7.670000e-26 128.0
4 TraesCS6D01G400000 chr6A 87.546 1646 153 19 534 2173 614810453 614812052 0.000000e+00 1857.0
5 TraesCS6D01G400000 chr6A 82.174 1840 263 42 351 2167 614842561 614844358 0.000000e+00 1520.0
6 TraesCS6D01G400000 chr6A 79.659 1819 219 66 362 2098 614966884 614965135 0.000000e+00 1170.0
7 TraesCS6D01G400000 chr6A 81.752 274 40 6 1337 1601 614807246 614807518 1.230000e-53 220.0
8 TraesCS6D01G400000 chr6A 85.646 209 9 5 2431 2638 614812051 614812239 1.600000e-47 200.0
9 TraesCS6D01G400000 chrUn 81.268 1767 258 45 349 2080 310058207 310056479 0.000000e+00 1362.0
10 TraesCS6D01G400000 chrUn 97.826 46 0 1 2127 2172 310056446 310056402 7.830000e-11 78.7
11 TraesCS6D01G400000 chr6B 81.352 1346 199 23 349 1665 716263973 716265295 0.000000e+00 1048.0
12 TraesCS6D01G400000 chr6B 80.353 397 61 11 999 1390 716313006 716313390 4.300000e-73 285.0
13 TraesCS6D01G400000 chr6B 81.564 179 30 3 68 244 716263733 716263910 7.610000e-31 145.0
14 TraesCS6D01G400000 chr5D 92.937 269 19 0 2165 2433 517961088 517961356 2.460000e-105 392.0
15 TraesCS6D01G400000 chr5D 85.714 126 18 0 952 1077 445403950 445403825 1.650000e-27 134.0
16 TraesCS6D01G400000 chr4D 92.366 262 20 0 2171 2432 395403156 395403417 8.920000e-100 374.0
17 TraesCS6D01G400000 chr3B 92.105 266 20 1 2171 2435 563178790 563178525 8.920000e-100 374.0
18 TraesCS6D01G400000 chr2D 92.395 263 18 2 2170 2432 134535844 134535584 8.920000e-100 374.0
19 TraesCS6D01G400000 chr2B 92.045 264 21 0 2169 2432 120234054 120234317 3.210000e-99 372.0
20 TraesCS6D01G400000 chr4A 92.015 263 21 0 2170 2432 585122741 585122479 1.150000e-98 370.0
21 TraesCS6D01G400000 chr4A 91.667 264 22 0 2169 2432 671653361 671653624 1.490000e-97 366.0
22 TraesCS6D01G400000 chr1D 91.985 262 21 0 2171 2432 367412724 367412463 4.150000e-98 368.0
23 TraesCS6D01G400000 chr5A 85.714 126 18 0 952 1077 563254626 563254501 1.650000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G400000 chr6D 470046792 470049430 2638 False 4874.00 4874 100.000000 1 2639 1 chr6D.!!$F2 2638
1 TraesCS6D01G400000 chr6D 470101959 470103594 1635 True 1072.00 1072 79.169000 362 2022 1 chr6D.!!$R1 1660
2 TraesCS6D01G400000 chr6A 614842561 614844358 1797 False 1520.00 1520 82.174000 351 2167 1 chr6A.!!$F1 1816
3 TraesCS6D01G400000 chr6A 614965135 614966884 1749 True 1170.00 1170 79.659000 362 2098 1 chr6A.!!$R1 1736
4 TraesCS6D01G400000 chr6A 614807246 614812239 4993 False 759.00 1857 84.981333 534 2638 3 chr6A.!!$F2 2104
5 TraesCS6D01G400000 chrUn 310056402 310058207 1805 True 720.35 1362 89.547000 349 2172 2 chrUn.!!$R1 1823
6 TraesCS6D01G400000 chr6B 716263733 716265295 1562 False 596.50 1048 81.458000 68 1665 2 chr6B.!!$F2 1597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 477 0.178903 ACTGCTGTCCTGGAGGGTTA 60.179 55.0 0.0 0.0 36.25 2.85 F
594 3269 0.380378 TTGTCCGCAACAGAAAGCAC 59.620 50.0 0.0 0.0 39.58 4.40 F
1481 4216 0.535335 TATCACAACGGAGGAGTGCC 59.465 55.0 0.0 0.0 33.44 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1302 4028 0.037303 AGCACAACATCTCCACCCAG 59.963 55.000 0.00 0.0 0.00 4.45 R
1612 4353 0.684153 ATTTCTTCCCCGGTGGCATG 60.684 55.000 0.00 0.0 0.00 4.06 R
2379 5167 1.686052 GGTTTCCATGCAAGTCAACCA 59.314 47.619 12.38 0.0 34.87 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.836125 TTCATTGAGAAAGCAACCAGTC 57.164 40.909 0.00 0.00 32.05 3.51
30 31 3.149196 TCATTGAGAAAGCAACCAGTCC 58.851 45.455 0.00 0.00 0.00 3.85
31 32 3.152341 CATTGAGAAAGCAACCAGTCCT 58.848 45.455 0.00 0.00 0.00 3.85
38 39 2.121992 AGCAACCAGTCCTGCTGAGG 62.122 60.000 0.00 0.00 46.97 3.86
51 52 5.710646 TCCTGCTGAGGAGAATAGTTATCT 58.289 41.667 1.31 0.00 44.13 1.98
52 53 6.139671 TCCTGCTGAGGAGAATAGTTATCTT 58.860 40.000 1.31 0.00 44.13 2.40
53 54 6.613271 TCCTGCTGAGGAGAATAGTTATCTTT 59.387 38.462 1.31 0.00 44.13 2.52
54 55 7.126421 TCCTGCTGAGGAGAATAGTTATCTTTT 59.874 37.037 1.31 0.00 44.13 2.27
55 56 7.226325 CCTGCTGAGGAGAATAGTTATCTTTTG 59.774 40.741 1.31 0.00 42.93 2.44
57 58 7.766278 TGCTGAGGAGAATAGTTATCTTTTGAC 59.234 37.037 0.00 0.00 0.00 3.18
58 59 7.766278 GCTGAGGAGAATAGTTATCTTTTGACA 59.234 37.037 0.00 0.00 0.00 3.58
59 60 9.311916 CTGAGGAGAATAGTTATCTTTTGACAG 57.688 37.037 0.00 0.00 0.00 3.51
61 62 7.624549 AGGAGAATAGTTATCTTTTGACAGCA 58.375 34.615 0.00 0.00 0.00 4.41
63 64 7.313951 AGAATAGTTATCTTTTGACAGCAGC 57.686 36.000 0.00 0.00 0.00 5.25
65 66 3.754965 AGTTATCTTTTGACAGCAGCCA 58.245 40.909 0.00 0.00 0.00 4.75
67 68 0.877071 ATCTTTTGACAGCAGCCACG 59.123 50.000 0.00 0.00 0.00 4.94
68 69 1.370900 CTTTTGACAGCAGCCACGC 60.371 57.895 0.00 0.00 0.00 5.34
69 70 2.737932 CTTTTGACAGCAGCCACGCC 62.738 60.000 0.00 0.00 0.00 5.68
85 86 2.663196 CCGGTGGACTTCACTCCC 59.337 66.667 0.00 0.00 45.38 4.30
91 92 3.068307 CGGTGGACTTCACTCCCTATAAG 59.932 52.174 0.00 0.00 45.38 1.73
104 105 5.905913 ACTCCCTATAAGCTATTTGTGGACT 59.094 40.000 0.00 0.00 0.00 3.85
107 108 7.054124 TCCCTATAAGCTATTTGTGGACTTTG 58.946 38.462 0.00 0.00 0.00 2.77
117 118 2.783135 TGTGGACTTTGCATCTCCTTC 58.217 47.619 6.43 1.98 0.00 3.46
121 122 2.617532 GGACTTTGCATCTCCTTCTGCT 60.618 50.000 0.00 0.00 39.16 4.24
122 123 3.369892 GGACTTTGCATCTCCTTCTGCTA 60.370 47.826 0.00 0.00 39.16 3.49
141 142 3.369261 GCTAATGATCGGATCAGGATGCT 60.369 47.826 23.59 5.38 43.53 3.79
144 145 0.321021 GATCGGATCAGGATGCTGCT 59.679 55.000 9.76 0.00 34.76 4.24
146 147 1.145598 CGGATCAGGATGCTGCTGT 59.854 57.895 9.76 0.00 37.12 4.40
153 154 0.540923 AGGATGCTGCTGTCCTTCTC 59.459 55.000 17.57 0.00 42.09 2.87
166 167 2.999355 GTCCTTCTCAGCACTGAATGAC 59.001 50.000 1.42 3.04 39.39 3.06
178 180 6.037940 CAGCACTGAATGACAACTATGCTATT 59.962 38.462 0.00 0.00 40.06 1.73
182 184 8.882736 CACTGAATGACAACTATGCTATTGTAA 58.117 33.333 0.00 0.00 39.13 2.41
189 191 5.295292 ACAACTATGCTATTGTAAGCTGCAG 59.705 40.000 10.11 10.11 43.19 4.41
190 192 3.812053 ACTATGCTATTGTAAGCTGCAGC 59.188 43.478 31.53 31.53 43.19 5.25
191 193 2.112380 TGCTATTGTAAGCTGCAGCA 57.888 45.000 38.24 19.65 45.16 4.41
213 215 3.606595 TGGCTCTCTGAGACATTTCAG 57.393 47.619 2.58 0.00 43.49 3.02
244 246 5.200483 ACACCAAAGAAAAGATGTTCTCCA 58.800 37.500 0.00 0.00 36.84 3.86
245 247 5.835280 ACACCAAAGAAAAGATGTTCTCCAT 59.165 36.000 0.00 0.00 36.84 3.41
246 248 6.324770 ACACCAAAGAAAAGATGTTCTCCATT 59.675 34.615 0.00 0.00 36.84 3.16
247 249 6.643770 CACCAAAGAAAAGATGTTCTCCATTG 59.356 38.462 0.00 0.00 36.84 2.82
249 251 7.088905 CCAAAGAAAAGATGTTCTCCATTGAG 58.911 38.462 0.00 0.00 36.84 3.02
250 252 7.255730 CCAAAGAAAAGATGTTCTCCATTGAGT 60.256 37.037 0.00 0.00 36.84 3.41
252 254 6.777782 AGAAAAGATGTTCTCCATTGAGTCT 58.222 36.000 0.00 0.00 39.75 3.24
253 255 6.654161 AGAAAAGATGTTCTCCATTGAGTCTG 59.346 38.462 0.00 0.00 39.75 3.51
254 256 4.484537 AGATGTTCTCCATTGAGTCTGG 57.515 45.455 0.00 0.00 39.75 3.86
255 257 2.479566 TGTTCTCCATTGAGTCTGGC 57.520 50.000 0.00 0.00 39.75 4.85
259 261 3.063510 TCTCCATTGAGTCTGGCTTTG 57.936 47.619 0.00 0.00 39.75 2.77
260 262 1.471684 CTCCATTGAGTCTGGCTTTGC 59.528 52.381 0.00 0.00 33.70 3.68
262 264 1.201647 CCATTGAGTCTGGCTTTGCAG 59.798 52.381 0.00 0.00 0.00 4.41
263 265 1.201647 CATTGAGTCTGGCTTTGCAGG 59.798 52.381 0.00 0.00 0.00 4.85
272 280 3.437795 CTTTGCAGGCCGCTCCAG 61.438 66.667 18.14 9.08 43.06 3.86
274 282 2.803155 CTTTGCAGGCCGCTCCAGTA 62.803 60.000 18.14 0.00 43.06 2.74
286 294 2.306341 CTCCAGTAGCAGTGTCCATG 57.694 55.000 0.00 0.00 0.00 3.66
287 295 0.250234 TCCAGTAGCAGTGTCCATGC 59.750 55.000 0.00 0.00 44.18 4.06
292 300 2.520465 TAGCAGTGTCCATGCCCGTG 62.520 60.000 0.00 0.00 44.97 4.94
294 302 1.742880 CAGTGTCCATGCCCGTGAG 60.743 63.158 0.00 0.00 0.00 3.51
295 303 1.913262 AGTGTCCATGCCCGTGAGA 60.913 57.895 0.00 0.00 0.00 3.27
296 304 1.448540 GTGTCCATGCCCGTGAGAG 60.449 63.158 0.00 0.00 0.00 3.20
297 305 2.512515 GTCCATGCCCGTGAGAGC 60.513 66.667 0.00 0.00 0.00 4.09
298 306 3.002583 TCCATGCCCGTGAGAGCA 61.003 61.111 0.00 0.00 44.45 4.26
304 312 1.373497 GCCCGTGAGAGCATATCGG 60.373 63.158 0.00 0.00 40.72 4.18
305 313 1.806461 GCCCGTGAGAGCATATCGGA 61.806 60.000 3.45 0.00 43.22 4.55
306 314 0.242286 CCCGTGAGAGCATATCGGAG 59.758 60.000 3.45 0.00 43.22 4.63
307 315 0.387878 CCGTGAGAGCATATCGGAGC 60.388 60.000 0.00 0.00 43.22 4.70
308 316 0.312102 CGTGAGAGCATATCGGAGCA 59.688 55.000 0.00 0.00 0.00 4.26
309 317 1.269257 CGTGAGAGCATATCGGAGCAA 60.269 52.381 0.00 0.00 0.00 3.91
310 318 2.799562 CGTGAGAGCATATCGGAGCAAA 60.800 50.000 0.00 0.00 0.00 3.68
311 319 3.397482 GTGAGAGCATATCGGAGCAAAT 58.603 45.455 0.00 0.00 0.00 2.32
312 320 4.560128 GTGAGAGCATATCGGAGCAAATA 58.440 43.478 0.00 0.00 0.00 1.40
313 321 4.624882 GTGAGAGCATATCGGAGCAAATAG 59.375 45.833 0.00 0.00 0.00 1.73
315 323 4.815269 AGAGCATATCGGAGCAAATAGTC 58.185 43.478 0.00 0.00 0.00 2.59
316 324 3.579709 AGCATATCGGAGCAAATAGTCG 58.420 45.455 0.00 0.00 0.00 4.18
318 326 2.433868 TATCGGAGCAAATAGTCGGC 57.566 50.000 0.00 0.00 0.00 5.54
319 327 0.753262 ATCGGAGCAAATAGTCGGCT 59.247 50.000 0.00 0.00 41.35 5.52
320 328 0.535335 TCGGAGCAAATAGTCGGCTT 59.465 50.000 0.00 0.00 38.15 4.35
321 329 0.652592 CGGAGCAAATAGTCGGCTTG 59.347 55.000 0.00 0.00 38.15 4.01
322 330 0.378610 GGAGCAAATAGTCGGCTTGC 59.621 55.000 3.99 3.99 44.61 4.01
325 333 1.900237 GCAAATAGTCGGCTTGCTTG 58.100 50.000 4.95 3.40 41.74 4.01
326 334 1.200020 GCAAATAGTCGGCTTGCTTGT 59.800 47.619 4.95 0.00 41.74 3.16
327 335 2.351738 GCAAATAGTCGGCTTGCTTGTT 60.352 45.455 4.95 0.00 41.74 2.83
328 336 3.236816 CAAATAGTCGGCTTGCTTGTTG 58.763 45.455 0.00 0.00 0.00 3.33
329 337 0.804989 ATAGTCGGCTTGCTTGTTGC 59.195 50.000 0.00 0.00 43.25 4.17
333 341 0.459489 TCGGCTTGCTTGTTGCTTTT 59.541 45.000 0.00 0.00 43.37 2.27
334 342 0.578211 CGGCTTGCTTGTTGCTTTTG 59.422 50.000 0.00 0.00 43.37 2.44
336 344 2.009051 GGCTTGCTTGTTGCTTTTGTT 58.991 42.857 0.00 0.00 43.37 2.83
337 345 2.030823 GGCTTGCTTGTTGCTTTTGTTC 59.969 45.455 0.00 0.00 43.37 3.18
338 346 2.285198 GCTTGCTTGTTGCTTTTGTTCG 60.285 45.455 0.00 0.00 43.37 3.95
339 347 1.276415 TGCTTGTTGCTTTTGTTCGC 58.724 45.000 0.00 0.00 43.37 4.70
340 348 0.226984 GCTTGTTGCTTTTGTTCGCG 59.773 50.000 0.00 0.00 38.95 5.87
342 350 2.710760 CTTGTTGCTTTTGTTCGCGTA 58.289 42.857 5.77 0.00 0.00 4.42
343 351 3.296628 CTTGTTGCTTTTGTTCGCGTAT 58.703 40.909 5.77 0.00 0.00 3.06
344 352 2.911120 TGTTGCTTTTGTTCGCGTATC 58.089 42.857 5.77 0.00 0.00 2.24
345 353 2.546368 TGTTGCTTTTGTTCGCGTATCT 59.454 40.909 5.77 0.00 0.00 1.98
346 354 2.873170 TGCTTTTGTTCGCGTATCTG 57.127 45.000 5.77 0.00 0.00 2.90
347 355 1.463056 TGCTTTTGTTCGCGTATCTGG 59.537 47.619 5.77 0.00 0.00 3.86
360 368 3.611057 GCGTATCTGGTATGTACCTTCCG 60.611 52.174 10.36 6.80 46.58 4.30
363 371 4.667519 ATCTGGTATGTACCTTCCGTTC 57.332 45.455 10.36 0.00 46.58 3.95
370 378 3.636313 TACCTTCCGTTCGCAGCCG 62.636 63.158 0.00 0.00 0.00 5.52
387 397 1.338136 CCGTAGCCCTCTTCCACCAT 61.338 60.000 0.00 0.00 0.00 3.55
388 398 1.410004 CGTAGCCCTCTTCCACCATA 58.590 55.000 0.00 0.00 0.00 2.74
443 453 3.813443 AGGTTACATATGCCTTGCTCTG 58.187 45.455 1.58 0.00 0.00 3.35
447 457 1.747355 ACATATGCCTTGCTCTGTTGC 59.253 47.619 1.58 0.00 0.00 4.17
464 474 2.667418 CACTGCTGTCCTGGAGGG 59.333 66.667 0.00 0.00 35.41 4.30
467 477 0.178903 ACTGCTGTCCTGGAGGGTTA 60.179 55.000 0.00 0.00 36.25 2.85
468 478 1.207791 CTGCTGTCCTGGAGGGTTAT 58.792 55.000 0.00 0.00 36.25 1.89
475 485 0.825010 CCTGGAGGGTTATGCCATGC 60.825 60.000 0.00 0.00 39.94 4.06
482 492 1.620822 GGTTATGCCATGCCCCTAAG 58.379 55.000 0.00 0.00 37.17 2.18
506 516 2.030805 GCATCACAAGGGACACAGAAAC 60.031 50.000 0.00 0.00 0.00 2.78
570 3245 7.442302 TGGTTTCCCAGTACAACCTTATAGGT 61.442 42.308 11.95 0.00 43.35 3.08
594 3269 0.380378 TTGTCCGCAACAGAAAGCAC 59.620 50.000 0.00 0.00 39.58 4.40
599 3274 0.877071 CGCAACAGAAAGCACTCCAT 59.123 50.000 0.00 0.00 0.00 3.41
612 3287 3.394940 AGCACTCCATGATGATGAGGATT 59.605 43.478 0.00 0.00 0.00 3.01
634 3309 1.203376 TGGGAGTCTTGGGATGTACCA 60.203 52.381 0.00 0.00 41.20 3.25
647 3322 2.163818 TGTACCAACTTCCTTCAGCG 57.836 50.000 0.00 0.00 0.00 5.18
717 3392 4.623932 AGTGCTCAAGTATGTGAAAGGA 57.376 40.909 0.00 0.00 0.00 3.36
785 3461 3.644966 TGATAACAGGGGCCAGTTTAG 57.355 47.619 17.09 0.00 0.00 1.85
834 3510 2.508436 GGCTGGAGCTTAGAGGGC 59.492 66.667 0.00 0.00 41.70 5.19
906 3584 3.436001 CCACACGGGTGTATCTCAC 57.564 57.895 18.16 0.00 42.83 3.51
916 3594 2.826128 GGTGTATCTCACTCTCACCACA 59.174 50.000 7.61 0.00 45.22 4.17
920 3598 1.239347 TCTCACTCTCACCACAGACG 58.761 55.000 0.00 0.00 0.00 4.18
961 3657 1.808945 GTCCTCATGCTTGGTGTGAAG 59.191 52.381 0.00 0.00 0.00 3.02
1130 3835 1.202806 CCAGGGAGACAAGCAAACTCA 60.203 52.381 0.00 0.00 33.00 3.41
1131 3836 2.553904 CCAGGGAGACAAGCAAACTCAT 60.554 50.000 0.00 0.00 33.00 2.90
1246 3972 2.093890 TCCGTGACGCTTGGAGTATTA 58.906 47.619 0.00 0.00 0.00 0.98
1254 3980 5.047164 TGACGCTTGGAGTATTACCAAAGTA 60.047 40.000 0.00 0.00 45.05 2.24
1261 3987 7.504926 TGGAGTATTACCAAAGTATTGTCCT 57.495 36.000 0.00 0.00 34.60 3.85
1291 4017 4.582869 TGAAGAGAAGATGTGGAATGTGG 58.417 43.478 0.00 0.00 0.00 4.17
1293 4019 3.947868 AGAGAAGATGTGGAATGTGGTG 58.052 45.455 0.00 0.00 0.00 4.17
1300 4026 0.539438 GTGGAATGTGGTGGAAGGCA 60.539 55.000 0.00 0.00 0.00 4.75
1302 4028 1.106285 GGAATGTGGTGGAAGGCATC 58.894 55.000 0.00 0.00 0.00 3.91
1350 4076 2.163412 CGCTAGATGCAGAGGATACCTC 59.837 54.545 9.50 9.50 41.94 3.85
1363 4089 1.205460 ATACCTCCACGCCAAGGGTT 61.205 55.000 3.01 0.00 36.95 4.11
1478 4213 4.405680 TCATCATTATCACAACGGAGGAGT 59.594 41.667 0.00 0.00 0.00 3.85
1481 4216 0.535335 TATCACAACGGAGGAGTGCC 59.465 55.000 0.00 0.00 33.44 5.01
1491 4226 1.229951 AGGAGTGCCTGGGGATGAA 60.230 57.895 0.00 0.00 44.90 2.57
1635 4376 1.024579 CCACCGGGGAAGAAATCGTG 61.025 60.000 4.41 0.00 40.01 4.35
1646 4387 6.258068 GGGGAAGAAATCGTGTAACTCATTAG 59.742 42.308 0.00 0.00 31.75 1.73
1647 4388 6.817140 GGGAAGAAATCGTGTAACTCATTAGT 59.183 38.462 0.00 0.00 37.65 2.24
1654 4395 9.817809 AAATCGTGTAACTCATTAGTATGATGT 57.182 29.630 0.00 0.00 39.94 3.06
1655 4396 9.817809 AATCGTGTAACTCATTAGTATGATGTT 57.182 29.630 0.00 0.00 39.94 2.71
1665 4406 7.512130 TCATTAGTATGATGTTTCTGGATGCT 58.488 34.615 0.00 0.00 35.87 3.79
1667 4408 9.445878 CATTAGTATGATGTTTCTGGATGCTAT 57.554 33.333 0.00 0.00 33.37 2.97
1682 4423 5.112686 GGATGCTATTTCGTCTCTGTTTCT 58.887 41.667 0.00 0.00 0.00 2.52
1687 4428 6.311445 TGCTATTTCGTCTCTGTTTCTCATTC 59.689 38.462 0.00 0.00 0.00 2.67
1722 4465 8.594687 GCTTTTATATGTGTGCCAATACTTTTG 58.405 33.333 0.00 0.00 0.00 2.44
1723 4466 9.638239 CTTTTATATGTGTGCCAATACTTTTGT 57.362 29.630 0.00 0.00 0.00 2.83
1724 4467 9.988815 TTTTATATGTGTGCCAATACTTTTGTT 57.011 25.926 0.00 0.00 0.00 2.83
1763 4511 3.300852 TGCTATGCATGTTTGTTGGTG 57.699 42.857 10.16 0.00 31.71 4.17
1772 4522 4.798924 GCATGTTTGTTGGTGCCATTTCTA 60.799 41.667 0.00 0.00 0.00 2.10
1785 4535 7.054751 GGTGCCATTTCTACTACTTAATTCCT 58.945 38.462 0.00 0.00 0.00 3.36
1786 4536 7.556635 GGTGCCATTTCTACTACTTAATTCCTT 59.443 37.037 0.00 0.00 0.00 3.36
1808 4559 6.810182 CCTTTTCCTGTTGCTGAATTCAATAG 59.190 38.462 9.88 2.73 33.99 1.73
1813 4564 5.065731 CCTGTTGCTGAATTCAATAGAGACC 59.934 44.000 9.88 0.00 35.52 3.85
1819 4570 5.587844 GCTGAATTCAATAGAGACCACACAT 59.412 40.000 9.88 0.00 0.00 3.21
1822 4574 6.942005 TGAATTCAATAGAGACCACACATGTT 59.058 34.615 5.45 0.00 0.00 2.71
1845 4597 2.681976 GCTGTGAGCCTGTAACATGGAT 60.682 50.000 0.00 0.00 34.48 3.41
1914 4678 5.010282 ACAATATGAGTTTCTGGGTGTTCC 58.990 41.667 0.00 0.00 0.00 3.62
1918 4682 2.777692 TGAGTTTCTGGGTGTTCCTCTT 59.222 45.455 0.00 0.00 36.20 2.85
1967 4731 5.791336 TCTGTAGCCTGTACCATGAATAG 57.209 43.478 0.00 0.00 0.00 1.73
1997 4761 7.565323 AAGCATCATTCTTCTTACTGATTCC 57.435 36.000 0.00 0.00 0.00 3.01
2173 4961 5.969435 GCAACCTGCGGTTTCTAATTAATAC 59.031 40.000 9.78 0.00 44.33 1.89
2174 4962 6.183360 GCAACCTGCGGTTTCTAATTAATACT 60.183 38.462 9.78 0.00 44.33 2.12
2175 4963 7.407337 CAACCTGCGGTTTCTAATTAATACTC 58.593 38.462 9.78 0.00 44.33 2.59
2176 4964 6.053650 ACCTGCGGTTTCTAATTAATACTCC 58.946 40.000 0.00 0.00 27.29 3.85
2177 4965 5.469084 CCTGCGGTTTCTAATTAATACTCCC 59.531 44.000 0.00 0.00 0.00 4.30
2178 4966 6.243216 TGCGGTTTCTAATTAATACTCCCT 57.757 37.500 0.00 0.00 0.00 4.20
2179 4967 6.285990 TGCGGTTTCTAATTAATACTCCCTC 58.714 40.000 0.00 0.00 0.00 4.30
2180 4968 6.099269 TGCGGTTTCTAATTAATACTCCCTCT 59.901 38.462 0.00 0.00 0.00 3.69
2181 4969 6.424207 GCGGTTTCTAATTAATACTCCCTCTG 59.576 42.308 0.00 0.00 0.00 3.35
2182 4970 7.498443 CGGTTTCTAATTAATACTCCCTCTGT 58.502 38.462 0.00 0.00 0.00 3.41
2183 4971 7.985752 CGGTTTCTAATTAATACTCCCTCTGTT 59.014 37.037 0.00 0.00 0.00 3.16
2184 4972 9.327628 GGTTTCTAATTAATACTCCCTCTGTTC 57.672 37.037 0.00 0.00 0.00 3.18
2185 4973 9.327628 GTTTCTAATTAATACTCCCTCTGTTCC 57.672 37.037 0.00 0.00 0.00 3.62
2186 4974 8.855804 TTCTAATTAATACTCCCTCTGTTCCT 57.144 34.615 0.00 0.00 0.00 3.36
2187 4975 8.855804 TCTAATTAATACTCCCTCTGTTCCTT 57.144 34.615 0.00 0.00 0.00 3.36
2188 4976 9.280456 TCTAATTAATACTCCCTCTGTTCCTTT 57.720 33.333 0.00 0.00 0.00 3.11
2196 4984 7.619512 ACTCCCTCTGTTCCTTTATATAAGG 57.380 40.000 0.00 0.00 38.78 2.69
2197 4985 7.140304 ACTCCCTCTGTTCCTTTATATAAGGT 58.860 38.462 4.13 0.00 38.55 3.50
2198 4986 7.071321 ACTCCCTCTGTTCCTTTATATAAGGTG 59.929 40.741 4.13 0.00 38.55 4.00
2199 4987 6.906901 TCCCTCTGTTCCTTTATATAAGGTGT 59.093 38.462 4.13 0.00 38.55 4.16
2200 4988 8.069356 TCCCTCTGTTCCTTTATATAAGGTGTA 58.931 37.037 4.13 0.00 38.55 2.90
2201 4989 8.881262 CCCTCTGTTCCTTTATATAAGGTGTAT 58.119 37.037 4.13 0.00 38.55 2.29
2231 5019 6.890663 TTTGAAAAGTCAAATGAGTGCAAG 57.109 33.333 0.00 0.00 46.48 4.01
2232 5020 5.581126 TGAAAAGTCAAATGAGTGCAAGT 57.419 34.783 0.00 0.00 0.00 3.16
2233 5021 5.964758 TGAAAAGTCAAATGAGTGCAAGTT 58.035 33.333 0.00 0.00 0.00 2.66
2234 5022 6.397272 TGAAAAGTCAAATGAGTGCAAGTTT 58.603 32.000 0.00 0.00 0.00 2.66
2235 5023 6.310956 TGAAAAGTCAAATGAGTGCAAGTTTG 59.689 34.615 0.00 0.00 33.91 2.93
2236 5024 5.581126 AAGTCAAATGAGTGCAAGTTTGA 57.419 34.783 10.95 10.95 38.01 2.69
2239 5027 4.923893 TCAAATGAGTGCAAGTTTGACTG 58.076 39.130 10.95 0.00 36.11 3.51
2240 5028 4.639755 TCAAATGAGTGCAAGTTTGACTGA 59.360 37.500 10.95 0.00 36.11 3.41
2241 5029 4.825546 AATGAGTGCAAGTTTGACTGAG 57.174 40.909 0.00 0.00 0.00 3.35
2242 5030 3.266510 TGAGTGCAAGTTTGACTGAGT 57.733 42.857 0.00 0.00 0.00 3.41
2243 5031 3.609853 TGAGTGCAAGTTTGACTGAGTT 58.390 40.909 0.00 0.00 0.00 3.01
2244 5032 4.009675 TGAGTGCAAGTTTGACTGAGTTT 58.990 39.130 0.00 0.00 0.00 2.66
2245 5033 4.458989 TGAGTGCAAGTTTGACTGAGTTTT 59.541 37.500 0.00 0.00 0.00 2.43
2246 5034 4.986622 AGTGCAAGTTTGACTGAGTTTTC 58.013 39.130 0.00 0.00 0.00 2.29
2247 5035 4.458989 AGTGCAAGTTTGACTGAGTTTTCA 59.541 37.500 0.00 0.00 0.00 2.69
2336 5124 9.791801 TTCATATTTTATCTACTAGGCATTGCA 57.208 29.630 11.39 0.00 0.00 4.08
2337 5125 9.791801 TCATATTTTATCTACTAGGCATTGCAA 57.208 29.630 11.39 0.00 0.00 4.08
2341 5129 7.880160 TTTATCTACTAGGCATTGCAAATGT 57.120 32.000 11.39 6.08 0.00 2.71
2342 5130 7.880160 TTATCTACTAGGCATTGCAAATGTT 57.120 32.000 11.39 0.00 0.00 2.71
2343 5131 6.780457 ATCTACTAGGCATTGCAAATGTTT 57.220 33.333 11.39 0.00 0.00 2.83
2344 5132 6.194796 TCTACTAGGCATTGCAAATGTTTC 57.805 37.500 11.39 0.00 0.00 2.78
2345 5133 5.945784 TCTACTAGGCATTGCAAATGTTTCT 59.054 36.000 11.39 5.33 0.00 2.52
2346 5134 7.109501 TCTACTAGGCATTGCAAATGTTTCTA 58.890 34.615 11.39 6.07 0.00 2.10
2347 5135 6.780457 ACTAGGCATTGCAAATGTTTCTAT 57.220 33.333 11.39 0.00 0.00 1.98
2348 5136 7.174107 ACTAGGCATTGCAAATGTTTCTATT 57.826 32.000 11.39 0.13 0.00 1.73
2349 5137 7.614494 ACTAGGCATTGCAAATGTTTCTATTT 58.386 30.769 11.39 0.00 0.00 1.40
2350 5138 8.096414 ACTAGGCATTGCAAATGTTTCTATTTT 58.904 29.630 11.39 0.00 0.00 1.82
2351 5139 9.585099 CTAGGCATTGCAAATGTTTCTATTTTA 57.415 29.630 11.39 0.00 0.00 1.52
2353 5141 9.452287 AGGCATTGCAAATGTTTCTATTTTATT 57.548 25.926 11.39 0.00 0.00 1.40
2354 5142 9.706846 GGCATTGCAAATGTTTCTATTTTATTC 57.293 29.630 11.39 0.00 0.00 1.75
2378 5166 9.513906 TTCTATAATCTTGGTCAAACATTCACA 57.486 29.630 0.00 0.00 0.00 3.58
2379 5167 9.685276 TCTATAATCTTGGTCAAACATTCACAT 57.315 29.630 0.00 0.00 0.00 3.21
2380 5168 9.726232 CTATAATCTTGGTCAAACATTCACATG 57.274 33.333 0.00 0.00 36.34 3.21
2381 5169 4.852134 TCTTGGTCAAACATTCACATGG 57.148 40.909 0.00 0.00 34.27 3.66
2382 5170 4.214310 TCTTGGTCAAACATTCACATGGT 58.786 39.130 0.00 0.00 34.27 3.55
2383 5171 4.648762 TCTTGGTCAAACATTCACATGGTT 59.351 37.500 0.00 0.00 41.37 3.67
2390 5178 3.648339 ACATTCACATGGTTGACTTGC 57.352 42.857 0.00 0.00 34.27 4.01
2391 5179 2.957680 ACATTCACATGGTTGACTTGCA 59.042 40.909 0.00 0.00 34.27 4.08
2392 5180 3.575256 ACATTCACATGGTTGACTTGCAT 59.425 39.130 0.00 0.00 34.27 3.96
2393 5181 3.646611 TTCACATGGTTGACTTGCATG 57.353 42.857 0.00 0.00 0.00 4.06
2394 5182 1.887854 TCACATGGTTGACTTGCATGG 59.112 47.619 4.44 0.00 0.00 3.66
2395 5183 1.887854 CACATGGTTGACTTGCATGGA 59.112 47.619 4.44 0.00 0.00 3.41
2396 5184 2.296752 CACATGGTTGACTTGCATGGAA 59.703 45.455 0.00 0.00 0.00 3.53
2397 5185 2.964464 ACATGGTTGACTTGCATGGAAA 59.036 40.909 0.00 0.00 0.00 3.13
2398 5186 3.243839 ACATGGTTGACTTGCATGGAAAC 60.244 43.478 0.00 7.63 0.00 2.78
2399 5187 1.686052 TGGTTGACTTGCATGGAAACC 59.314 47.619 21.91 21.91 38.02 3.27
2400 5188 1.686052 GGTTGACTTGCATGGAAACCA 59.314 47.619 22.95 5.49 37.57 3.67
2401 5189 2.102252 GGTTGACTTGCATGGAAACCAA 59.898 45.455 22.95 10.45 36.95 3.67
2402 5190 3.244181 GGTTGACTTGCATGGAAACCAAT 60.244 43.478 22.95 0.00 36.95 3.16
2403 5191 4.021544 GGTTGACTTGCATGGAAACCAATA 60.022 41.667 22.95 0.00 36.95 1.90
2404 5192 4.782019 TGACTTGCATGGAAACCAATAC 57.218 40.909 0.00 0.00 36.95 1.89
2405 5193 4.148079 TGACTTGCATGGAAACCAATACA 58.852 39.130 0.00 0.00 36.95 2.29
2406 5194 4.771577 TGACTTGCATGGAAACCAATACAT 59.228 37.500 0.00 0.00 36.95 2.29
2407 5195 5.105797 TGACTTGCATGGAAACCAATACATC 60.106 40.000 0.00 0.00 36.95 3.06
2408 5196 5.018809 ACTTGCATGGAAACCAATACATCT 58.981 37.500 0.00 0.00 36.95 2.90
2409 5197 5.481473 ACTTGCATGGAAACCAATACATCTT 59.519 36.000 0.00 0.00 36.95 2.40
2410 5198 6.663093 ACTTGCATGGAAACCAATACATCTTA 59.337 34.615 0.00 0.00 36.95 2.10
2411 5199 7.342799 ACTTGCATGGAAACCAATACATCTTAT 59.657 33.333 0.00 0.00 36.95 1.73
2412 5200 8.759481 TTGCATGGAAACCAATACATCTTATA 57.241 30.769 0.00 0.00 36.95 0.98
2413 5201 8.938801 TGCATGGAAACCAATACATCTTATAT 57.061 30.769 0.00 0.00 36.95 0.86
2414 5202 9.365906 TGCATGGAAACCAATACATCTTATATT 57.634 29.630 0.00 0.00 36.95 1.28
2415 5203 9.846248 GCATGGAAACCAATACATCTTATATTC 57.154 33.333 0.00 0.00 36.95 1.75
2418 5206 9.573166 TGGAAACCAATACATCTTATATTCTGG 57.427 33.333 0.00 0.00 0.00 3.86
2419 5207 9.793259 GGAAACCAATACATCTTATATTCTGGA 57.207 33.333 0.00 0.00 0.00 3.86
2423 5211 9.745018 ACCAATACATCTTATATTCTGGAATGG 57.255 33.333 6.13 0.00 32.50 3.16
2424 5212 9.964354 CCAATACATCTTATATTCTGGAATGGA 57.036 33.333 6.13 1.09 32.50 3.41
2427 5215 7.025520 ACATCTTATATTCTGGAATGGAGGG 57.974 40.000 6.13 2.04 32.50 4.30
2428 5216 6.794493 ACATCTTATATTCTGGAATGGAGGGA 59.206 38.462 6.13 0.24 32.50 4.20
2429 5217 6.942163 TCTTATATTCTGGAATGGAGGGAG 57.058 41.667 6.13 0.00 32.50 4.30
2430 5218 6.393897 TCTTATATTCTGGAATGGAGGGAGT 58.606 40.000 6.13 0.00 32.50 3.85
2431 5219 7.544650 TCTTATATTCTGGAATGGAGGGAGTA 58.455 38.462 6.13 0.00 32.50 2.59
2480 5268 9.886132 ATTAACAATATTCTCCTGACGTAAACT 57.114 29.630 0.00 0.00 0.00 2.66
2484 5272 8.475639 ACAATATTCTCCTGACGTAAACTACAT 58.524 33.333 0.00 0.00 0.00 2.29
2485 5273 8.755941 CAATATTCTCCTGACGTAAACTACATG 58.244 37.037 0.00 0.00 0.00 3.21
2486 5274 5.717078 TTCTCCTGACGTAAACTACATGT 57.283 39.130 2.69 2.69 0.00 3.21
2487 5275 5.055642 TCTCCTGACGTAAACTACATGTG 57.944 43.478 9.11 0.93 0.00 3.21
2488 5276 3.581755 TCCTGACGTAAACTACATGTGC 58.418 45.455 9.11 0.00 0.00 4.57
2489 5277 3.257375 TCCTGACGTAAACTACATGTGCT 59.743 43.478 9.11 0.00 0.00 4.40
2490 5278 3.612860 CCTGACGTAAACTACATGTGCTC 59.387 47.826 9.11 0.00 0.00 4.26
2491 5279 4.486090 CTGACGTAAACTACATGTGCTCT 58.514 43.478 9.11 0.00 0.00 4.09
2492 5280 5.392703 CCTGACGTAAACTACATGTGCTCTA 60.393 44.000 9.11 0.00 0.00 2.43
2493 5281 6.016213 TGACGTAAACTACATGTGCTCTAA 57.984 37.500 9.11 0.00 0.00 2.10
2494 5282 6.627243 TGACGTAAACTACATGTGCTCTAAT 58.373 36.000 9.11 0.00 0.00 1.73
2495 5283 7.764331 TGACGTAAACTACATGTGCTCTAATA 58.236 34.615 9.11 0.00 0.00 0.98
2496 5284 8.245491 TGACGTAAACTACATGTGCTCTAATAA 58.755 33.333 9.11 0.00 0.00 1.40
2497 5285 8.991243 ACGTAAACTACATGTGCTCTAATAAA 57.009 30.769 9.11 0.00 0.00 1.40
2498 5286 8.866956 ACGTAAACTACATGTGCTCTAATAAAC 58.133 33.333 9.11 0.00 0.00 2.01
2499 5287 8.865978 CGTAAACTACATGTGCTCTAATAAACA 58.134 33.333 9.11 0.00 0.00 2.83
2502 5290 8.848474 AACTACATGTGCTCTAATAAACAACT 57.152 30.769 9.11 0.00 0.00 3.16
2503 5291 8.256611 ACTACATGTGCTCTAATAAACAACTG 57.743 34.615 9.11 0.00 0.00 3.16
2563 5351 4.648762 AGGAGATCAGTATGTGACTTCCTG 59.351 45.833 10.75 0.00 44.30 3.86
2572 5360 6.366332 CAGTATGTGACTTCCTGTTTACTGTC 59.634 42.308 0.00 0.00 35.64 3.51
2582 5371 6.659745 TCCTGTTTACTGTCTGCTACTTAA 57.340 37.500 0.00 0.00 0.00 1.85
2606 5395 2.529151 GCATCCTTATGGTTGCGTTTG 58.471 47.619 13.25 0.00 45.54 2.93
2631 5420 9.838975 TGCATGTGTAGTATTATTTTGTTTCTG 57.161 29.630 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.624452 GGTTGCTTTCTCAATGAAATCTGC 59.376 41.667 0.00 0.00 42.96 4.26
7 8 4.037923 GGACTGGTTGCTTTCTCAATGAAA 59.962 41.667 0.00 0.00 41.85 2.69
8 9 3.569701 GGACTGGTTGCTTTCTCAATGAA 59.430 43.478 0.00 0.00 0.00 2.57
9 10 3.149196 GGACTGGTTGCTTTCTCAATGA 58.851 45.455 0.00 0.00 0.00 2.57
12 13 2.575532 CAGGACTGGTTGCTTTCTCAA 58.424 47.619 0.00 0.00 0.00 3.02
13 14 1.815408 GCAGGACTGGTTGCTTTCTCA 60.815 52.381 1.01 0.00 37.35 3.27
14 15 0.877743 GCAGGACTGGTTGCTTTCTC 59.122 55.000 1.01 0.00 37.35 2.87
15 16 3.027419 GCAGGACTGGTTGCTTTCT 57.973 52.632 1.01 0.00 37.35 2.52
20 21 2.116983 TCCTCAGCAGGACTGGTTGC 62.117 60.000 0.56 0.00 44.75 4.17
24 25 1.202330 ATTCTCCTCAGCAGGACTGG 58.798 55.000 1.01 0.00 44.75 4.00
25 26 3.030291 ACTATTCTCCTCAGCAGGACTG 58.970 50.000 0.00 0.00 44.75 3.51
27 28 5.538433 AGATAACTATTCTCCTCAGCAGGAC 59.462 44.000 0.00 0.00 44.75 3.85
29 30 6.418057 AAGATAACTATTCTCCTCAGCAGG 57.582 41.667 0.00 0.00 42.01 4.85
30 31 7.984050 TCAAAAGATAACTATTCTCCTCAGCAG 59.016 37.037 0.00 0.00 0.00 4.24
31 32 7.766278 GTCAAAAGATAACTATTCTCCTCAGCA 59.234 37.037 0.00 0.00 0.00 4.41
34 35 7.766278 GCTGTCAAAAGATAACTATTCTCCTCA 59.234 37.037 0.00 0.00 0.00 3.86
35 36 7.766278 TGCTGTCAAAAGATAACTATTCTCCTC 59.234 37.037 0.00 0.00 0.00 3.71
38 39 7.405769 GCTGCTGTCAAAAGATAACTATTCTC 58.594 38.462 0.00 0.00 0.00 2.87
39 40 6.317391 GGCTGCTGTCAAAAGATAACTATTCT 59.683 38.462 0.00 0.00 0.00 2.40
41 42 5.945784 TGGCTGCTGTCAAAAGATAACTATT 59.054 36.000 0.00 0.00 0.00 1.73
42 43 5.355350 GTGGCTGCTGTCAAAAGATAACTAT 59.645 40.000 0.00 0.00 0.00 2.12
43 44 4.695455 GTGGCTGCTGTCAAAAGATAACTA 59.305 41.667 0.00 0.00 0.00 2.24
47 48 2.076100 CGTGGCTGCTGTCAAAAGATA 58.924 47.619 0.00 0.00 0.00 1.98
48 49 0.877071 CGTGGCTGCTGTCAAAAGAT 59.123 50.000 0.00 0.00 0.00 2.40
49 50 1.785041 GCGTGGCTGCTGTCAAAAGA 61.785 55.000 0.00 0.00 0.00 2.52
50 51 1.370900 GCGTGGCTGCTGTCAAAAG 60.371 57.895 0.00 0.00 0.00 2.27
51 52 2.721231 GCGTGGCTGCTGTCAAAA 59.279 55.556 0.00 0.00 0.00 2.44
52 53 3.286751 GGCGTGGCTGCTGTCAAA 61.287 61.111 0.00 0.00 34.52 2.69
65 66 3.222354 GAGTGAAGTCCACCGGCGT 62.222 63.158 6.01 0.00 46.87 5.68
67 68 2.047179 GGAGTGAAGTCCACCGGC 60.047 66.667 0.00 0.00 46.87 6.13
68 69 0.613853 TAGGGAGTGAAGTCCACCGG 60.614 60.000 0.00 0.00 46.87 5.28
69 70 1.486211 ATAGGGAGTGAAGTCCACCG 58.514 55.000 6.52 0.00 46.87 4.94
70 71 3.181464 GCTTATAGGGAGTGAAGTCCACC 60.181 52.174 6.52 0.00 46.87 4.61
71 72 3.707102 AGCTTATAGGGAGTGAAGTCCAC 59.293 47.826 6.52 0.00 46.03 4.02
72 73 3.995636 AGCTTATAGGGAGTGAAGTCCA 58.004 45.455 6.52 0.00 38.52 4.02
73 74 6.673839 AATAGCTTATAGGGAGTGAAGTCC 57.326 41.667 0.00 0.00 35.64 3.85
74 75 7.439655 CACAAATAGCTTATAGGGAGTGAAGTC 59.560 40.741 0.00 0.00 0.00 3.01
75 76 7.275920 CACAAATAGCTTATAGGGAGTGAAGT 58.724 38.462 0.00 0.00 0.00 3.01
76 77 6.708054 CCACAAATAGCTTATAGGGAGTGAAG 59.292 42.308 0.00 0.00 0.00 3.02
77 78 6.385759 TCCACAAATAGCTTATAGGGAGTGAA 59.614 38.462 0.00 0.00 0.00 3.18
85 86 7.320443 TGCAAAGTCCACAAATAGCTTATAG 57.680 36.000 0.00 0.00 0.00 1.31
91 92 4.439289 GGAGATGCAAAGTCCACAAATAGC 60.439 45.833 7.34 0.00 0.00 2.97
104 105 4.847198 TCATTAGCAGAAGGAGATGCAAA 58.153 39.130 0.00 0.00 45.01 3.68
107 108 3.679025 CGATCATTAGCAGAAGGAGATGC 59.321 47.826 0.00 0.00 42.87 3.91
117 118 3.949842 TCCTGATCCGATCATTAGCAG 57.050 47.619 11.53 0.00 38.85 4.24
121 122 3.618263 GCAGCATCCTGATCCGATCATTA 60.618 47.826 11.53 3.72 41.77 1.90
122 123 2.874861 GCAGCATCCTGATCCGATCATT 60.875 50.000 11.53 0.00 41.77 2.57
144 145 2.634453 TCATTCAGTGCTGAGAAGGACA 59.366 45.455 1.98 0.00 41.13 4.02
146 147 2.634453 TGTCATTCAGTGCTGAGAAGGA 59.366 45.455 1.98 0.00 41.13 3.36
153 154 3.688185 AGCATAGTTGTCATTCAGTGCTG 59.312 43.478 0.00 0.00 39.90 4.41
158 159 8.066595 GCTTACAATAGCATAGTTGTCATTCAG 58.933 37.037 0.00 0.00 40.89 3.02
160 161 8.066595 CAGCTTACAATAGCATAGTTGTCATTC 58.933 37.037 0.00 0.00 43.68 2.67
161 162 7.467811 GCAGCTTACAATAGCATAGTTGTCATT 60.468 37.037 0.00 0.00 43.68 2.57
166 167 5.739752 TGCAGCTTACAATAGCATAGTTG 57.260 39.130 0.00 0.00 43.68 3.16
178 180 1.885157 GCCAATGCTGCAGCTTACA 59.115 52.632 36.61 19.33 42.66 2.41
189 191 2.328819 ATGTCTCAGAGAGCCAATGC 57.671 50.000 0.00 0.00 37.95 3.56
190 192 4.259356 TGAAATGTCTCAGAGAGCCAATG 58.741 43.478 0.00 0.00 0.00 2.82
191 193 4.515361 CTGAAATGTCTCAGAGAGCCAAT 58.485 43.478 0.00 0.00 44.82 3.16
204 206 3.055819 TGGTGTAGAGGAGCTGAAATGTC 60.056 47.826 0.00 0.00 0.00 3.06
207 209 4.287067 TCTTTGGTGTAGAGGAGCTGAAAT 59.713 41.667 0.00 0.00 0.00 2.17
213 215 4.642429 TCTTTTCTTTGGTGTAGAGGAGC 58.358 43.478 0.00 0.00 0.00 4.70
244 246 1.542492 CCTGCAAAGCCAGACTCAAT 58.458 50.000 0.00 0.00 34.77 2.57
245 247 1.174712 GCCTGCAAAGCCAGACTCAA 61.175 55.000 0.00 0.00 34.77 3.02
246 248 1.601759 GCCTGCAAAGCCAGACTCA 60.602 57.895 0.00 0.00 34.77 3.41
247 249 3.272031 GCCTGCAAAGCCAGACTC 58.728 61.111 0.00 0.00 34.77 3.36
269 277 0.745845 GGCATGGACACTGCTACTGG 60.746 60.000 0.00 0.00 39.60 4.00
272 280 1.815421 CGGGCATGGACACTGCTAC 60.815 63.158 0.00 0.00 39.60 3.58
274 282 3.640407 ACGGGCATGGACACTGCT 61.640 61.111 0.00 0.00 39.60 4.24
281 289 1.048160 TATGCTCTCACGGGCATGGA 61.048 55.000 9.77 0.00 46.75 3.41
286 294 1.373497 CCGATATGCTCTCACGGGC 60.373 63.158 0.00 0.00 39.92 6.13
287 295 0.242286 CTCCGATATGCTCTCACGGG 59.758 60.000 0.00 0.00 43.14 5.28
292 300 4.815269 ACTATTTGCTCCGATATGCTCTC 58.185 43.478 0.00 0.00 0.00 3.20
294 302 3.610242 CGACTATTTGCTCCGATATGCTC 59.390 47.826 0.00 0.00 0.00 4.26
295 303 3.579709 CGACTATTTGCTCCGATATGCT 58.420 45.455 0.00 0.00 0.00 3.79
296 304 2.668457 CCGACTATTTGCTCCGATATGC 59.332 50.000 0.00 0.00 0.00 3.14
297 305 2.668457 GCCGACTATTTGCTCCGATATG 59.332 50.000 0.00 0.00 0.00 1.78
298 306 2.563179 AGCCGACTATTTGCTCCGATAT 59.437 45.455 0.00 0.00 0.00 1.63
299 307 1.961394 AGCCGACTATTTGCTCCGATA 59.039 47.619 0.00 0.00 0.00 2.92
300 308 0.753262 AGCCGACTATTTGCTCCGAT 59.247 50.000 0.00 0.00 0.00 4.18
301 309 0.535335 AAGCCGACTATTTGCTCCGA 59.465 50.000 0.00 0.00 33.36 4.55
302 310 0.652592 CAAGCCGACTATTTGCTCCG 59.347 55.000 0.00 0.00 33.36 4.63
304 312 3.905900 GCAAGCCGACTATTTGCTC 57.094 52.632 1.51 0.00 42.84 4.26
306 314 1.200020 ACAAGCAAGCCGACTATTTGC 59.800 47.619 0.46 0.46 45.64 3.68
307 315 3.236816 CAACAAGCAAGCCGACTATTTG 58.763 45.455 0.00 0.00 0.00 2.32
308 316 2.351738 GCAACAAGCAAGCCGACTATTT 60.352 45.455 0.00 0.00 44.79 1.40
309 317 1.200020 GCAACAAGCAAGCCGACTATT 59.800 47.619 0.00 0.00 44.79 1.73
310 318 0.804989 GCAACAAGCAAGCCGACTAT 59.195 50.000 0.00 0.00 44.79 2.12
311 319 2.244000 GCAACAAGCAAGCCGACTA 58.756 52.632 0.00 0.00 44.79 2.59
312 320 3.034030 GCAACAAGCAAGCCGACT 58.966 55.556 0.00 0.00 44.79 4.18
321 329 0.226984 CGCGAACAAAAGCAACAAGC 59.773 50.000 0.00 0.00 46.19 4.01
322 330 1.544686 ACGCGAACAAAAGCAACAAG 58.455 45.000 15.93 0.00 0.00 3.16
323 331 2.826979 TACGCGAACAAAAGCAACAA 57.173 40.000 15.93 0.00 0.00 2.83
325 333 2.902484 CAGATACGCGAACAAAAGCAAC 59.098 45.455 15.93 0.00 0.00 4.17
326 334 2.095969 CCAGATACGCGAACAAAAGCAA 60.096 45.455 15.93 0.00 0.00 3.91
327 335 1.463056 CCAGATACGCGAACAAAAGCA 59.537 47.619 15.93 0.00 0.00 3.91
328 336 1.463444 ACCAGATACGCGAACAAAAGC 59.537 47.619 15.93 0.00 0.00 3.51
329 337 4.328983 ACATACCAGATACGCGAACAAAAG 59.671 41.667 15.93 0.00 0.00 2.27
333 341 3.243168 GGTACATACCAGATACGCGAACA 60.243 47.826 15.93 0.00 45.73 3.18
334 342 3.303406 GGTACATACCAGATACGCGAAC 58.697 50.000 15.93 3.14 45.73 3.95
346 354 1.135024 TGCGAACGGAAGGTACATACC 60.135 52.381 0.00 0.00 46.82 2.73
347 355 2.190981 CTGCGAACGGAAGGTACATAC 58.809 52.381 0.00 0.00 0.00 2.39
360 368 4.452733 AGGGCTACGGCTGCGAAC 62.453 66.667 0.00 0.00 38.73 3.95
363 371 4.148825 AAGAGGGCTACGGCTGCG 62.149 66.667 0.00 0.00 38.73 5.18
370 378 2.365941 GACTATGGTGGAAGAGGGCTAC 59.634 54.545 0.00 0.00 0.00 3.58
414 424 3.117550 AGGCATATGTAACCTTGGCATCA 60.118 43.478 4.29 0.00 37.14 3.07
443 453 1.227943 TCCAGGACAGCAGTGCAAC 60.228 57.895 19.20 7.74 38.75 4.17
447 457 1.772819 AACCCTCCAGGACAGCAGTG 61.773 60.000 0.00 0.00 39.89 3.66
464 474 1.620822 CCTTAGGGGCATGGCATAAC 58.379 55.000 22.06 7.92 0.00 1.89
482 492 1.678970 GTGTCCCTTGTGATGCCCC 60.679 63.158 0.00 0.00 0.00 5.80
484 494 0.036732 TCTGTGTCCCTTGTGATGCC 59.963 55.000 0.00 0.00 0.00 4.40
506 516 1.202687 TGACTTGTGTTGGCCTCAGAG 60.203 52.381 3.32 7.20 0.00 3.35
570 3245 2.613026 TTCTGTTGCGGACAAAGAGA 57.387 45.000 0.00 0.00 37.93 3.10
574 3249 1.098869 TGCTTTCTGTTGCGGACAAA 58.901 45.000 0.00 0.00 37.93 2.83
594 3269 4.072839 CCACAATCCTCATCATCATGGAG 58.927 47.826 0.00 0.00 31.59 3.86
599 3274 3.117745 ACTCCCACAATCCTCATCATCA 58.882 45.455 0.00 0.00 0.00 3.07
612 3287 1.906574 GTACATCCCAAGACTCCCACA 59.093 52.381 0.00 0.00 0.00 4.17
634 3309 1.217882 CAACGTCGCTGAAGGAAGTT 58.782 50.000 0.00 0.00 36.72 2.66
647 3322 1.512926 AGACTTCATGTGCCAACGTC 58.487 50.000 0.00 0.00 0.00 4.34
717 3392 0.923729 TTATGTGATGCCCCCACCCT 60.924 55.000 0.00 0.00 33.80 4.34
785 3461 1.966451 CACCCTTCACGCCCAAGAC 60.966 63.158 0.00 0.00 0.00 3.01
834 3510 2.061773 AGAACACTCTCGTCAAATGCG 58.938 47.619 0.00 0.00 0.00 4.73
873 3549 4.322499 CCCGTGTGGTAGTAACAGAAATCT 60.322 45.833 0.00 0.00 0.00 2.40
906 3584 1.080230 CAGCCGTCTGTGGTGAGAG 60.080 63.158 0.00 0.00 35.61 3.20
916 3594 4.908687 TTGCGTGCACAGCCGTCT 62.909 61.111 24.00 0.00 0.00 4.18
920 3598 1.154150 GAATCTTGCGTGCACAGCC 60.154 57.895 24.00 10.74 0.00 4.85
961 3657 2.158842 CCCTCTTGTGATGACCAGATCC 60.159 54.545 0.00 0.00 0.00 3.36
1130 3835 4.467795 TCTGTGTAAGCTCTGCTTCCTTAT 59.532 41.667 8.14 0.00 46.77 1.73
1131 3836 3.832490 TCTGTGTAAGCTCTGCTTCCTTA 59.168 43.478 8.14 0.00 46.77 2.69
1246 3972 3.412386 GCAGACAGGACAATACTTTGGT 58.588 45.455 0.00 0.00 37.15 3.67
1254 3980 1.980765 TCTTCAGGCAGACAGGACAAT 59.019 47.619 0.00 0.00 0.00 2.71
1261 3987 2.902486 ACATCTTCTCTTCAGGCAGACA 59.098 45.455 0.00 0.00 0.00 3.41
1291 4017 1.379044 CCACCCAGATGCCTTCCAC 60.379 63.158 0.00 0.00 0.00 4.02
1293 4019 1.225704 CTCCACCCAGATGCCTTCC 59.774 63.158 0.00 0.00 0.00 3.46
1300 4026 1.340405 GCACAACATCTCCACCCAGAT 60.340 52.381 0.00 0.00 33.00 2.90
1302 4028 0.037303 AGCACAACATCTCCACCCAG 59.963 55.000 0.00 0.00 0.00 4.45
1380 4106 3.235200 GAGCCAGACATAGGTGAGGTAT 58.765 50.000 0.00 0.00 0.00 2.73
1441 4167 1.146930 GATGATCCGCCCTCTGCAA 59.853 57.895 0.00 0.00 41.33 4.08
1478 4213 1.139498 TGAAGGTTCATCCCCAGGCA 61.139 55.000 0.00 0.00 36.75 4.75
1481 4216 2.887151 AGTTGAAGGTTCATCCCCAG 57.113 50.000 0.00 0.00 37.00 4.45
1491 4226 2.803492 GCTGACACGAGAAGTTGAAGGT 60.803 50.000 0.00 0.00 0.00 3.50
1612 4353 0.684153 ATTTCTTCCCCGGTGGCATG 60.684 55.000 0.00 0.00 0.00 4.06
1620 4361 2.928116 GAGTTACACGATTTCTTCCCCG 59.072 50.000 0.00 0.00 0.00 5.73
1635 4376 9.817809 TCCAGAAACATCATACTAATGAGTTAC 57.182 33.333 0.00 0.00 45.17 2.50
1646 4387 7.041780 ACGAAATAGCATCCAGAAACATCATAC 60.042 37.037 0.00 0.00 0.00 2.39
1647 4388 6.992123 ACGAAATAGCATCCAGAAACATCATA 59.008 34.615 0.00 0.00 0.00 2.15
1653 4394 5.006165 CAGAGACGAAATAGCATCCAGAAAC 59.994 44.000 0.00 0.00 0.00 2.78
1654 4395 5.111989 CAGAGACGAAATAGCATCCAGAAA 58.888 41.667 0.00 0.00 0.00 2.52
1655 4396 4.160439 ACAGAGACGAAATAGCATCCAGAA 59.840 41.667 0.00 0.00 0.00 3.02
1665 4406 6.936279 AGGAATGAGAAACAGAGACGAAATA 58.064 36.000 0.00 0.00 0.00 1.40
1667 4408 5.011125 AGAGGAATGAGAAACAGAGACGAAA 59.989 40.000 0.00 0.00 0.00 3.46
1682 4423 8.461222 CACATATAAAAGCAAACAGAGGAATGA 58.539 33.333 0.00 0.00 0.00 2.57
1687 4428 5.801947 GCACACATATAAAAGCAAACAGAGG 59.198 40.000 0.00 0.00 0.00 3.69
1724 4467 7.484641 GCATAGCATCGTTAATCAACAGAAAAA 59.515 33.333 0.00 0.00 34.05 1.94
1743 4491 2.609984 GCACCAACAAACATGCATAGCA 60.610 45.455 0.00 0.00 44.86 3.49
1772 4522 7.004691 AGCAACAGGAAAAGGAATTAAGTAGT 58.995 34.615 0.00 0.00 0.00 2.73
1785 4535 7.448161 TCTCTATTGAATTCAGCAACAGGAAAA 59.552 33.333 8.41 0.00 0.00 2.29
1786 4536 6.942005 TCTCTATTGAATTCAGCAACAGGAAA 59.058 34.615 8.41 0.00 0.00 3.13
1789 4539 5.065731 GGTCTCTATTGAATTCAGCAACAGG 59.934 44.000 8.41 0.00 0.00 4.00
1808 4559 1.949525 ACAGCAAACATGTGTGGTCTC 59.050 47.619 17.83 0.47 0.00 3.36
1813 4564 1.601162 GGCTCACAGCAAACATGTGTG 60.601 52.381 11.98 11.98 46.49 3.82
1819 4570 1.946768 GTTACAGGCTCACAGCAAACA 59.053 47.619 0.00 0.00 44.75 2.83
1822 4574 2.153645 CATGTTACAGGCTCACAGCAA 58.846 47.619 0.00 0.00 44.75 3.91
1829 4581 2.338577 AGCATCCATGTTACAGGCTC 57.661 50.000 0.00 0.00 0.00 4.70
1967 4731 7.334421 TCAGTAAGAAGAATGATGCTTTGGTAC 59.666 37.037 0.00 0.00 0.00 3.34
1997 4761 9.026074 GTTCTCTTCCTTGTAAATTAGAGATCG 57.974 37.037 0.00 0.00 35.16 3.69
2099 4878 1.617804 CCCCATCTTTCACATGGCTGT 60.618 52.381 0.00 0.00 39.78 4.40
2173 4961 7.071321 ACACCTTATATAAAGGAACAGAGGGAG 59.929 40.741 10.67 3.30 39.81 4.30
2174 4962 6.906901 ACACCTTATATAAAGGAACAGAGGGA 59.093 38.462 10.67 0.00 39.81 4.20
2175 4963 7.138054 ACACCTTATATAAAGGAACAGAGGG 57.862 40.000 10.67 4.11 39.81 4.30
2209 4997 5.964758 ACTTGCACTCATTTGACTTTTCAA 58.035 33.333 0.00 0.00 40.14 2.69
2210 4998 5.581126 ACTTGCACTCATTTGACTTTTCA 57.419 34.783 0.00 0.00 0.00 2.69
2211 4999 6.531240 TCAAACTTGCACTCATTTGACTTTTC 59.469 34.615 8.87 0.00 36.42 2.29
2212 5000 6.397272 TCAAACTTGCACTCATTTGACTTTT 58.603 32.000 8.87 0.00 36.42 2.27
2213 5001 5.964758 TCAAACTTGCACTCATTTGACTTT 58.035 33.333 8.87 0.00 36.42 2.66
2214 5002 5.581126 TCAAACTTGCACTCATTTGACTT 57.419 34.783 8.87 0.00 36.42 3.01
2217 5005 4.639755 TCAGTCAAACTTGCACTCATTTGA 59.360 37.500 8.87 8.87 38.42 2.69
2218 5006 4.923893 TCAGTCAAACTTGCACTCATTTG 58.076 39.130 0.00 0.00 34.11 2.32
2219 5007 4.641989 ACTCAGTCAAACTTGCACTCATTT 59.358 37.500 0.00 0.00 0.00 2.32
2220 5008 4.202441 ACTCAGTCAAACTTGCACTCATT 58.798 39.130 0.00 0.00 0.00 2.57
2221 5009 3.813443 ACTCAGTCAAACTTGCACTCAT 58.187 40.909 0.00 0.00 0.00 2.90
2222 5010 3.266510 ACTCAGTCAAACTTGCACTCA 57.733 42.857 0.00 0.00 0.00 3.41
2223 5011 4.622701 AAACTCAGTCAAACTTGCACTC 57.377 40.909 0.00 0.00 0.00 3.51
2224 5012 4.458989 TGAAAACTCAGTCAAACTTGCACT 59.541 37.500 0.00 0.00 0.00 4.40
2225 5013 4.732784 TGAAAACTCAGTCAAACTTGCAC 58.267 39.130 0.00 0.00 0.00 4.57
2226 5014 4.699735 TCTGAAAACTCAGTCAAACTTGCA 59.300 37.500 2.28 0.00 38.75 4.08
2227 5015 5.235305 TCTGAAAACTCAGTCAAACTTGC 57.765 39.130 2.28 0.00 38.75 4.01
2228 5016 8.519492 TTTTTCTGAAAACTCAGTCAAACTTG 57.481 30.769 14.70 0.00 38.75 3.16
2310 5098 9.791801 TGCAATGCCTAGTAGATAAAATATGAA 57.208 29.630 1.53 0.00 0.00 2.57
2311 5099 9.791801 TTGCAATGCCTAGTAGATAAAATATGA 57.208 29.630 1.53 0.00 0.00 2.15
2315 5103 8.917088 ACATTTGCAATGCCTAGTAGATAAAAT 58.083 29.630 1.53 0.00 0.00 1.82
2316 5104 8.292444 ACATTTGCAATGCCTAGTAGATAAAA 57.708 30.769 1.53 0.00 0.00 1.52
2317 5105 7.880160 ACATTTGCAATGCCTAGTAGATAAA 57.120 32.000 1.53 0.00 0.00 1.40
2318 5106 7.880160 AACATTTGCAATGCCTAGTAGATAA 57.120 32.000 1.53 0.00 0.00 1.75
2319 5107 7.775093 AGAAACATTTGCAATGCCTAGTAGATA 59.225 33.333 1.53 0.00 0.00 1.98
2320 5108 6.604795 AGAAACATTTGCAATGCCTAGTAGAT 59.395 34.615 1.53 0.00 0.00 1.98
2321 5109 5.945784 AGAAACATTTGCAATGCCTAGTAGA 59.054 36.000 1.53 0.00 0.00 2.59
2322 5110 6.199937 AGAAACATTTGCAATGCCTAGTAG 57.800 37.500 1.53 0.00 0.00 2.57
2323 5111 7.880160 ATAGAAACATTTGCAATGCCTAGTA 57.120 32.000 1.53 0.00 0.00 1.82
2324 5112 6.780457 ATAGAAACATTTGCAATGCCTAGT 57.220 33.333 1.53 0.00 0.00 2.57
2325 5113 8.483307 AAAATAGAAACATTTGCAATGCCTAG 57.517 30.769 1.53 0.00 0.00 3.02
2327 5115 9.452287 AATAAAATAGAAACATTTGCAATGCCT 57.548 25.926 1.53 2.90 0.00 4.75
2328 5116 9.706846 GAATAAAATAGAAACATTTGCAATGCC 57.293 29.630 1.53 0.00 0.00 4.40
2352 5140 9.513906 TGTGAATGTTTGACCAAGATTATAGAA 57.486 29.630 0.00 0.00 28.47 2.10
2353 5141 9.685276 ATGTGAATGTTTGACCAAGATTATAGA 57.315 29.630 0.00 0.00 28.47 1.98
2354 5142 9.726232 CATGTGAATGTTTGACCAAGATTATAG 57.274 33.333 0.00 0.00 28.47 1.31
2355 5143 8.685427 CCATGTGAATGTTTGACCAAGATTATA 58.315 33.333 0.00 0.00 28.47 0.98
2356 5144 7.178983 ACCATGTGAATGTTTGACCAAGATTAT 59.821 33.333 0.00 0.00 28.47 1.28
2357 5145 6.493115 ACCATGTGAATGTTTGACCAAGATTA 59.507 34.615 0.00 0.00 28.47 1.75
2358 5146 5.305128 ACCATGTGAATGTTTGACCAAGATT 59.695 36.000 0.00 0.00 31.00 2.40
2359 5147 4.834496 ACCATGTGAATGTTTGACCAAGAT 59.166 37.500 0.00 0.00 0.00 2.40
2360 5148 4.214310 ACCATGTGAATGTTTGACCAAGA 58.786 39.130 0.00 0.00 0.00 3.02
2361 5149 4.589216 ACCATGTGAATGTTTGACCAAG 57.411 40.909 0.00 0.00 0.00 3.61
2362 5150 4.403752 TCAACCATGTGAATGTTTGACCAA 59.596 37.500 0.00 0.00 29.82 3.67
2363 5151 3.956848 TCAACCATGTGAATGTTTGACCA 59.043 39.130 0.00 0.00 29.82 4.02
2364 5152 4.298332 GTCAACCATGTGAATGTTTGACC 58.702 43.478 14.62 2.22 43.60 4.02
2366 5154 5.590145 CAAGTCAACCATGTGAATGTTTGA 58.410 37.500 0.00 0.00 31.87 2.69
2367 5155 4.209703 GCAAGTCAACCATGTGAATGTTTG 59.790 41.667 0.00 0.00 0.00 2.93
2368 5156 4.141981 TGCAAGTCAACCATGTGAATGTTT 60.142 37.500 0.00 0.00 0.00 2.83
2369 5157 3.384146 TGCAAGTCAACCATGTGAATGTT 59.616 39.130 0.00 0.00 0.00 2.71
2370 5158 2.957680 TGCAAGTCAACCATGTGAATGT 59.042 40.909 0.00 0.00 0.00 2.71
2371 5159 3.646611 TGCAAGTCAACCATGTGAATG 57.353 42.857 0.00 0.00 0.00 2.67
2372 5160 3.056393 CCATGCAAGTCAACCATGTGAAT 60.056 43.478 0.00 0.00 35.70 2.57
2373 5161 2.296752 CCATGCAAGTCAACCATGTGAA 59.703 45.455 0.00 0.00 35.70 3.18
2374 5162 1.887854 CCATGCAAGTCAACCATGTGA 59.112 47.619 0.00 0.00 35.70 3.58
2375 5163 1.887854 TCCATGCAAGTCAACCATGTG 59.112 47.619 0.00 0.00 35.70 3.21
2376 5164 2.291209 TCCATGCAAGTCAACCATGT 57.709 45.000 0.00 0.00 35.70 3.21
2377 5165 3.319755 GTTTCCATGCAAGTCAACCATG 58.680 45.455 0.00 0.00 36.87 3.66
2378 5166 2.299867 GGTTTCCATGCAAGTCAACCAT 59.700 45.455 12.38 0.00 34.87 3.55
2379 5167 1.686052 GGTTTCCATGCAAGTCAACCA 59.314 47.619 12.38 0.00 34.87 3.67
2380 5168 1.686052 TGGTTTCCATGCAAGTCAACC 59.314 47.619 10.96 10.96 35.25 3.77
2381 5169 3.451141 TTGGTTTCCATGCAAGTCAAC 57.549 42.857 0.00 0.00 31.53 3.18
2382 5170 4.586421 TGTATTGGTTTCCATGCAAGTCAA 59.414 37.500 0.00 0.00 31.53 3.18
2383 5171 4.148079 TGTATTGGTTTCCATGCAAGTCA 58.852 39.130 0.00 0.00 31.53 3.41
2384 5172 4.782019 TGTATTGGTTTCCATGCAAGTC 57.218 40.909 0.00 0.00 31.53 3.01
2385 5173 5.018809 AGATGTATTGGTTTCCATGCAAGT 58.981 37.500 0.00 0.00 31.53 3.16
2386 5174 5.587388 AGATGTATTGGTTTCCATGCAAG 57.413 39.130 0.00 0.00 31.53 4.01
2387 5175 5.999205 AAGATGTATTGGTTTCCATGCAA 57.001 34.783 0.00 0.00 31.53 4.08
2388 5176 8.938801 ATATAAGATGTATTGGTTTCCATGCA 57.061 30.769 0.00 0.00 31.53 3.96
2389 5177 9.846248 GAATATAAGATGTATTGGTTTCCATGC 57.154 33.333 0.00 0.00 31.53 4.06
2392 5180 9.573166 CCAGAATATAAGATGTATTGGTTTCCA 57.427 33.333 0.00 0.00 0.00 3.53
2393 5181 9.793259 TCCAGAATATAAGATGTATTGGTTTCC 57.207 33.333 0.00 0.00 0.00 3.13
2397 5185 9.745018 CCATTCCAGAATATAAGATGTATTGGT 57.255 33.333 0.00 0.00 0.00 3.67
2398 5186 9.964354 TCCATTCCAGAATATAAGATGTATTGG 57.036 33.333 0.00 0.00 0.00 3.16
2401 5189 8.776119 CCCTCCATTCCAGAATATAAGATGTAT 58.224 37.037 0.00 0.00 0.00 2.29
2402 5190 7.961431 TCCCTCCATTCCAGAATATAAGATGTA 59.039 37.037 0.00 0.00 0.00 2.29
2403 5191 6.794493 TCCCTCCATTCCAGAATATAAGATGT 59.206 38.462 0.00 0.00 0.00 3.06
2404 5192 7.037730 ACTCCCTCCATTCCAGAATATAAGATG 60.038 40.741 0.00 0.00 0.00 2.90
2405 5193 7.028131 ACTCCCTCCATTCCAGAATATAAGAT 58.972 38.462 0.00 0.00 0.00 2.40
2406 5194 6.393897 ACTCCCTCCATTCCAGAATATAAGA 58.606 40.000 0.00 0.00 0.00 2.10
2407 5195 6.694445 ACTCCCTCCATTCCAGAATATAAG 57.306 41.667 0.00 0.00 0.00 1.73
2408 5196 8.757307 ATTACTCCCTCCATTCCAGAATATAA 57.243 34.615 0.00 0.00 0.00 0.98
2409 5197 8.605947 CAATTACTCCCTCCATTCCAGAATATA 58.394 37.037 0.00 0.00 0.00 0.86
2410 5198 7.465116 CAATTACTCCCTCCATTCCAGAATAT 58.535 38.462 0.00 0.00 0.00 1.28
2411 5199 6.183361 CCAATTACTCCCTCCATTCCAGAATA 60.183 42.308 0.00 0.00 0.00 1.75
2412 5200 5.399497 CCAATTACTCCCTCCATTCCAGAAT 60.399 44.000 0.00 0.00 0.00 2.40
2413 5201 4.079787 CCAATTACTCCCTCCATTCCAGAA 60.080 45.833 0.00 0.00 0.00 3.02
2414 5202 3.459598 CCAATTACTCCCTCCATTCCAGA 59.540 47.826 0.00 0.00 0.00 3.86
2415 5203 3.203040 ACCAATTACTCCCTCCATTCCAG 59.797 47.826 0.00 0.00 0.00 3.86
2416 5204 3.053693 CACCAATTACTCCCTCCATTCCA 60.054 47.826 0.00 0.00 0.00 3.53
2417 5205 3.202151 TCACCAATTACTCCCTCCATTCC 59.798 47.826 0.00 0.00 0.00 3.01
2418 5206 4.503714 TCACCAATTACTCCCTCCATTC 57.496 45.455 0.00 0.00 0.00 2.67
2419 5207 4.946160 TTCACCAATTACTCCCTCCATT 57.054 40.909 0.00 0.00 0.00 3.16
2420 5208 4.478317 TGATTCACCAATTACTCCCTCCAT 59.522 41.667 0.00 0.00 0.00 3.41
2421 5209 3.849574 TGATTCACCAATTACTCCCTCCA 59.150 43.478 0.00 0.00 0.00 3.86
2422 5210 4.503714 TGATTCACCAATTACTCCCTCC 57.496 45.455 0.00 0.00 0.00 4.30
2423 5211 7.410120 AATTTGATTCACCAATTACTCCCTC 57.590 36.000 0.00 0.00 0.00 4.30
2424 5212 7.235399 ACAAATTTGATTCACCAATTACTCCCT 59.765 33.333 24.64 0.00 0.00 4.20
2425 5213 7.386059 ACAAATTTGATTCACCAATTACTCCC 58.614 34.615 24.64 0.00 0.00 4.30
2426 5214 8.306761 AGACAAATTTGATTCACCAATTACTCC 58.693 33.333 24.64 0.00 0.00 3.85
2427 5215 9.132521 CAGACAAATTTGATTCACCAATTACTC 57.867 33.333 24.64 6.39 0.00 2.59
2428 5216 8.859090 TCAGACAAATTTGATTCACCAATTACT 58.141 29.630 24.64 0.00 0.00 2.24
2429 5217 9.643693 ATCAGACAAATTTGATTCACCAATTAC 57.356 29.630 24.64 0.76 30.06 1.89
2480 5268 9.366216 CTACAGTTGTTTATTAGAGCACATGTA 57.634 33.333 0.00 0.00 0.00 2.29
2484 5272 5.642063 GCCTACAGTTGTTTATTAGAGCACA 59.358 40.000 0.00 0.00 0.00 4.57
2485 5273 5.642063 TGCCTACAGTTGTTTATTAGAGCAC 59.358 40.000 0.00 0.00 0.00 4.40
2486 5274 5.800296 TGCCTACAGTTGTTTATTAGAGCA 58.200 37.500 0.00 0.00 0.00 4.26
2487 5275 6.538742 TGATGCCTACAGTTGTTTATTAGAGC 59.461 38.462 0.00 0.00 0.00 4.09
2488 5276 8.492673 TTGATGCCTACAGTTGTTTATTAGAG 57.507 34.615 0.00 0.00 0.00 2.43
2492 5280 9.019656 TGTTATTGATGCCTACAGTTGTTTATT 57.980 29.630 0.00 0.00 0.00 1.40
2493 5281 8.574251 TGTTATTGATGCCTACAGTTGTTTAT 57.426 30.769 0.00 0.00 0.00 1.40
2494 5282 7.987750 TGTTATTGATGCCTACAGTTGTTTA 57.012 32.000 0.00 0.00 0.00 2.01
2495 5283 6.892658 TGTTATTGATGCCTACAGTTGTTT 57.107 33.333 0.00 0.00 0.00 2.83
2496 5284 6.892658 TTGTTATTGATGCCTACAGTTGTT 57.107 33.333 0.00 0.00 0.00 2.83
2497 5285 7.466746 AATTGTTATTGATGCCTACAGTTGT 57.533 32.000 0.00 0.00 0.00 3.32
2498 5286 8.028354 TGAAATTGTTATTGATGCCTACAGTTG 58.972 33.333 0.00 0.00 0.00 3.16
2499 5287 8.121305 TGAAATTGTTATTGATGCCTACAGTT 57.879 30.769 0.00 0.00 0.00 3.16
2500 5288 7.701539 TGAAATTGTTATTGATGCCTACAGT 57.298 32.000 0.00 0.00 0.00 3.55
2501 5289 7.489113 GGTTGAAATTGTTATTGATGCCTACAG 59.511 37.037 0.00 0.00 0.00 2.74
2502 5290 7.319646 GGTTGAAATTGTTATTGATGCCTACA 58.680 34.615 0.00 0.00 0.00 2.74
2503 5291 6.756542 GGGTTGAAATTGTTATTGATGCCTAC 59.243 38.462 0.00 0.00 0.00 3.18
2548 5336 6.267928 AGACAGTAAACAGGAAGTCACATACT 59.732 38.462 0.00 0.00 41.49 2.12
2563 5351 6.645415 TGCTCTTTAAGTAGCAGACAGTAAAC 59.355 38.462 12.57 0.00 43.56 2.01
2572 5360 7.903576 ACCATAAGGATGCTCTTTAAGTAGCAG 60.904 40.741 18.38 9.23 44.43 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.