Multiple sequence alignment - TraesCS6D01G399700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G399700 chr6D 100.000 2192 0 0 1 2192 469992140 469989949 0.000000e+00 4048.0
1 TraesCS6D01G399700 chr6D 94.028 1306 68 7 894 2192 469969597 469968295 0.000000e+00 1971.0
2 TraesCS6D01G399700 chr6D 82.659 865 142 8 973 1833 469791889 469791029 0.000000e+00 760.0
3 TraesCS6D01G399700 chr6D 86.842 76 6 2 701 773 470109917 470109843 5.020000e-12 82.4
4 TraesCS6D01G399700 chrUn 85.612 973 128 9 870 1835 291937792 291936825 0.000000e+00 1011.0
5 TraesCS6D01G399700 chrUn 85.612 973 128 9 870 1835 328964909 328963942 0.000000e+00 1011.0
6 TraesCS6D01G399700 chrUn 83.796 864 127 10 979 1834 331544469 331545327 0.000000e+00 808.0
7 TraesCS6D01G399700 chrUn 79.118 340 63 6 1498 1833 247574100 247573765 6.090000e-56 228.0
8 TraesCS6D01G399700 chrUn 82.800 250 38 3 1498 1745 468925354 468925600 3.660000e-53 219.0
9 TraesCS6D01G399700 chrUn 81.290 155 21 5 798 951 291938165 291938018 3.820000e-23 119.0
10 TraesCS6D01G399700 chrUn 81.290 155 21 5 798 951 328965282 328965135 3.820000e-23 119.0
11 TraesCS6D01G399700 chrUn 86.207 87 5 5 703 783 324085351 324085266 1.080000e-13 87.9
12 TraesCS6D01G399700 chr6A 85.246 976 132 8 870 1835 614678519 614677546 0.000000e+00 994.0
13 TraesCS6D01G399700 chr6A 84.180 1024 144 10 828 1835 614795338 614794317 0.000000e+00 977.0
14 TraesCS6D01G399700 chr6A 81.818 869 143 11 973 1832 614697853 614696991 0.000000e+00 715.0
15 TraesCS6D01G399700 chr6A 78.663 778 145 17 980 1747 614784868 614784102 4.200000e-137 497.0
16 TraesCS6D01G399700 chr6A 78.534 191 20 11 513 703 614795917 614795748 2.980000e-19 106.0
17 TraesCS6D01G399700 chr6A 76.959 217 24 13 788 1002 614795706 614795514 1.380000e-17 100.0
18 TraesCS6D01G399700 chr6A 75.000 232 39 14 731 951 614678971 614678748 3.000000e-14 89.8
19 TraesCS6D01G399700 chr6B 84.805 974 138 8 870 1835 715771962 715770991 0.000000e+00 970.0
20 TraesCS6D01G399700 chr6B 81.630 871 148 9 973 1837 715980290 715979426 0.000000e+00 712.0
21 TraesCS6D01G399700 chr6B 81.342 879 156 5 959 1832 715971102 715970227 0.000000e+00 708.0
22 TraesCS6D01G399700 chr6B 78.539 219 27 15 48 259 716114449 716114244 2.280000e-25 126.0
23 TraesCS6D01G399700 chr6B 89.855 69 6 1 712 780 715853353 715853286 1.080000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G399700 chr6D 469989949 469992140 2191 True 4048.000000 4048 100.000 1 2192 1 chr6D.!!$R3 2191
1 TraesCS6D01G399700 chr6D 469968295 469969597 1302 True 1971.000000 1971 94.028 894 2192 1 chr6D.!!$R2 1298
2 TraesCS6D01G399700 chr6D 469791029 469791889 860 True 760.000000 760 82.659 973 1833 1 chr6D.!!$R1 860
3 TraesCS6D01G399700 chrUn 331544469 331545327 858 False 808.000000 808 83.796 979 1834 1 chrUn.!!$F1 855
4 TraesCS6D01G399700 chrUn 291936825 291938165 1340 True 565.000000 1011 83.451 798 1835 2 chrUn.!!$R3 1037
5 TraesCS6D01G399700 chrUn 328963942 328965282 1340 True 565.000000 1011 83.451 798 1835 2 chrUn.!!$R4 1037
6 TraesCS6D01G399700 chr6A 614696991 614697853 862 True 715.000000 715 81.818 973 1832 1 chr6A.!!$R1 859
7 TraesCS6D01G399700 chr6A 614677546 614678971 1425 True 541.900000 994 80.123 731 1835 2 chr6A.!!$R3 1104
8 TraesCS6D01G399700 chr6A 614784102 614784868 766 True 497.000000 497 78.663 980 1747 1 chr6A.!!$R2 767
9 TraesCS6D01G399700 chr6A 614794317 614795917 1600 True 394.333333 977 79.891 513 1835 3 chr6A.!!$R4 1322
10 TraesCS6D01G399700 chr6B 715770991 715771962 971 True 970.000000 970 84.805 870 1835 1 chr6B.!!$R1 965
11 TraesCS6D01G399700 chr6B 715979426 715980290 864 True 712.000000 712 81.630 973 1837 1 chr6B.!!$R4 864
12 TraesCS6D01G399700 chr6B 715970227 715971102 875 True 708.000000 708 81.342 959 1832 1 chr6B.!!$R3 873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 669 0.032515 TTCCAGGCCCAGATCTACGA 60.033 55.0 0.0 0.0 0.0 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2339 1.041726 CACGCACGCACATAAACAAC 58.958 50.0 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.301153 ACACAACTTTTCATAATTCTGAACAAC 57.699 29.630 5.81 0.00 34.96 3.32
48 49 9.520204 CACAACTTTTCATAATTCTGAACAACT 57.480 29.630 5.81 0.00 34.96 3.16
49 50 9.520204 ACAACTTTTCATAATTCTGAACAACTG 57.480 29.630 5.81 5.08 34.96 3.16
50 51 9.520204 CAACTTTTCATAATTCTGAACAACTGT 57.480 29.630 5.81 0.01 34.96 3.55
52 53 9.520204 ACTTTTCATAATTCTGAACAACTGTTG 57.480 29.630 18.44 18.44 38.56 3.33
53 54 8.870160 TTTTCATAATTCTGAACAACTGTTGG 57.130 30.769 23.15 6.81 38.56 3.77
54 55 6.573664 TCATAATTCTGAACAACTGTTGGG 57.426 37.500 23.15 10.96 38.56 4.12
55 56 3.733443 AATTCTGAACAACTGTTGGGC 57.267 42.857 23.15 14.85 38.56 5.36
56 57 1.398692 TTCTGAACAACTGTTGGGCC 58.601 50.000 23.15 12.38 38.56 5.80
57 58 0.257328 TCTGAACAACTGTTGGGCCA 59.743 50.000 23.15 0.00 38.56 5.36
58 59 0.385390 CTGAACAACTGTTGGGCCAC 59.615 55.000 23.15 1.85 38.56 5.01
59 60 1.358759 GAACAACTGTTGGGCCACG 59.641 57.895 23.15 0.00 38.56 4.94
60 61 1.379309 AACAACTGTTGGGCCACGT 60.379 52.632 23.15 0.09 36.80 4.49
61 62 1.662438 AACAACTGTTGGGCCACGTG 61.662 55.000 23.15 9.08 36.80 4.49
62 63 2.518349 AACTGTTGGGCCACGTGG 60.518 61.111 30.66 30.66 38.53 4.94
63 64 3.352990 AACTGTTGGGCCACGTGGT 62.353 57.895 33.92 10.45 37.57 4.16
64 65 2.518349 CTGTTGGGCCACGTGGTT 60.518 61.111 33.92 0.00 37.57 3.67
65 66 2.043852 TGTTGGGCCACGTGGTTT 60.044 55.556 33.92 0.00 37.57 3.27
66 67 1.671901 CTGTTGGGCCACGTGGTTTT 61.672 55.000 33.92 0.00 37.57 2.43
67 68 1.227118 GTTGGGCCACGTGGTTTTG 60.227 57.895 33.92 10.43 37.57 2.44
68 69 2.427245 TTGGGCCACGTGGTTTTGG 61.427 57.895 33.92 9.92 37.57 3.28
69 70 3.611674 GGGCCACGTGGTTTTGGG 61.612 66.667 33.92 9.05 37.57 4.12
71 72 4.293648 GCCACGTGGTTTTGGGCC 62.294 66.667 33.92 12.44 38.70 5.80
72 73 3.611674 CCACGTGGTTTTGGGCCC 61.612 66.667 26.95 17.59 0.00 5.80
73 74 2.835431 CACGTGGTTTTGGGCCCA 60.835 61.111 24.45 24.45 0.00 5.36
74 75 2.835895 ACGTGGTTTTGGGCCCAC 60.836 61.111 28.70 14.49 46.20 4.61
76 77 3.611674 GTGGTTTTGGGCCCACGG 61.612 66.667 28.70 0.00 41.55 4.94
77 78 3.822035 TGGTTTTGGGCCCACGGA 61.822 61.111 28.70 7.46 0.00 4.69
78 79 2.522193 GGTTTTGGGCCCACGGAA 60.522 61.111 28.70 14.75 0.00 4.30
79 80 2.732016 GTTTTGGGCCCACGGAAC 59.268 61.111 28.70 24.54 0.00 3.62
80 81 2.128507 GTTTTGGGCCCACGGAACA 61.129 57.895 28.70 5.47 0.00 3.18
81 82 1.830408 TTTTGGGCCCACGGAACAG 60.830 57.895 28.70 0.00 0.00 3.16
82 83 2.285889 TTTTGGGCCCACGGAACAGA 62.286 55.000 28.70 3.51 0.00 3.41
83 84 2.690653 TTTGGGCCCACGGAACAGAG 62.691 60.000 28.70 0.00 0.00 3.35
84 85 3.319198 GGGCCCACGGAACAGAGA 61.319 66.667 19.95 0.00 0.00 3.10
85 86 2.266055 GGCCCACGGAACAGAGAG 59.734 66.667 0.00 0.00 0.00 3.20
86 87 2.283529 GGCCCACGGAACAGAGAGA 61.284 63.158 0.00 0.00 0.00 3.10
87 88 1.216710 GCCCACGGAACAGAGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
88 89 1.251527 GCCCACGGAACAGAGAGAGA 61.252 60.000 0.00 0.00 0.00 3.10
89 90 0.814457 CCCACGGAACAGAGAGAGAG 59.186 60.000 0.00 0.00 0.00 3.20
90 91 1.614583 CCCACGGAACAGAGAGAGAGA 60.615 57.143 0.00 0.00 0.00 3.10
91 92 1.742831 CCACGGAACAGAGAGAGAGAG 59.257 57.143 0.00 0.00 0.00 3.20
92 93 2.616765 CCACGGAACAGAGAGAGAGAGA 60.617 54.545 0.00 0.00 0.00 3.10
93 94 2.677836 CACGGAACAGAGAGAGAGAGAG 59.322 54.545 0.00 0.00 0.00 3.20
94 95 2.569853 ACGGAACAGAGAGAGAGAGAGA 59.430 50.000 0.00 0.00 0.00 3.10
95 96 3.198068 CGGAACAGAGAGAGAGAGAGAG 58.802 54.545 0.00 0.00 0.00 3.20
96 97 3.118775 CGGAACAGAGAGAGAGAGAGAGA 60.119 52.174 0.00 0.00 0.00 3.10
97 98 4.446371 GGAACAGAGAGAGAGAGAGAGAG 58.554 52.174 0.00 0.00 0.00 3.20
98 99 4.162320 GGAACAGAGAGAGAGAGAGAGAGA 59.838 50.000 0.00 0.00 0.00 3.10
99 100 5.163258 GGAACAGAGAGAGAGAGAGAGAGAT 60.163 48.000 0.00 0.00 0.00 2.75
100 101 5.287674 ACAGAGAGAGAGAGAGAGAGATG 57.712 47.826 0.00 0.00 0.00 2.90
101 102 4.102210 ACAGAGAGAGAGAGAGAGAGATGG 59.898 50.000 0.00 0.00 0.00 3.51
102 103 3.649981 AGAGAGAGAGAGAGAGAGATGGG 59.350 52.174 0.00 0.00 0.00 4.00
103 104 2.107204 AGAGAGAGAGAGAGAGATGGGC 59.893 54.545 0.00 0.00 0.00 5.36
104 105 1.145738 AGAGAGAGAGAGAGATGGGCC 59.854 57.143 0.00 0.00 0.00 5.80
105 106 0.932955 AGAGAGAGAGAGATGGGCCA 59.067 55.000 9.61 9.61 0.00 5.36
106 107 1.133388 AGAGAGAGAGAGATGGGCCAG 60.133 57.143 13.78 0.00 0.00 4.85
107 108 0.932955 AGAGAGAGAGATGGGCCAGA 59.067 55.000 13.78 0.00 0.00 3.86
108 109 1.039856 GAGAGAGAGATGGGCCAGAC 58.960 60.000 13.78 8.98 0.00 3.51
109 110 0.754957 AGAGAGAGATGGGCCAGACG 60.755 60.000 13.78 0.00 0.00 4.18
110 111 0.753479 GAGAGAGATGGGCCAGACGA 60.753 60.000 13.78 0.00 0.00 4.20
111 112 1.040339 AGAGAGATGGGCCAGACGAC 61.040 60.000 13.78 8.66 0.00 4.34
112 113 2.105128 GAGATGGGCCAGACGACG 59.895 66.667 13.78 0.00 0.00 5.12
113 114 2.362503 AGATGGGCCAGACGACGA 60.363 61.111 13.78 0.00 0.00 4.20
114 115 2.202756 GATGGGCCAGACGACGAC 60.203 66.667 13.78 0.00 0.00 4.34
115 116 4.129737 ATGGGCCAGACGACGACG 62.130 66.667 13.78 5.58 45.75 5.12
134 135 3.164011 CGACGACGACTTGGCGAC 61.164 66.667 0.00 0.00 42.66 5.19
137 138 4.695231 CGACGACTTGGCGACGGT 62.695 66.667 12.29 0.00 43.43 4.83
138 139 2.804090 GACGACTTGGCGACGGTC 60.804 66.667 1.78 4.36 35.13 4.79
141 142 4.353437 GACTTGGCGACGGTCGGT 62.353 66.667 29.30 19.21 40.84 4.69
142 143 4.353437 ACTTGGCGACGGTCGGTC 62.353 66.667 29.30 15.04 40.84 4.79
149 150 4.017092 GACGGTCGGTCGTTGTTT 57.983 55.556 5.55 0.00 43.96 2.83
150 151 1.848640 GACGGTCGGTCGTTGTTTC 59.151 57.895 5.55 0.00 43.96 2.78
151 152 1.551503 GACGGTCGGTCGTTGTTTCC 61.552 60.000 5.55 0.00 43.96 3.13
152 153 2.651137 CGGTCGGTCGTTGTTTCCG 61.651 63.158 0.00 0.00 44.76 4.30
153 154 2.547798 GTCGGTCGTTGTTTCCGC 59.452 61.111 0.00 0.00 43.35 5.54
154 155 3.031457 TCGGTCGTTGTTTCCGCG 61.031 61.111 0.00 0.00 43.35 6.46
155 156 3.332409 CGGTCGTTGTTTCCGCGT 61.332 61.111 4.92 0.00 37.90 6.01
156 157 2.873604 CGGTCGTTGTTTCCGCGTT 61.874 57.895 4.92 0.00 37.90 4.84
157 158 1.368374 GGTCGTTGTTTCCGCGTTG 60.368 57.895 4.92 0.00 0.00 4.10
158 159 2.001880 GTCGTTGTTTCCGCGTTGC 61.002 57.895 4.92 0.00 0.00 4.17
159 160 2.724358 CGTTGTTTCCGCGTTGCC 60.724 61.111 4.92 0.00 0.00 4.52
160 161 2.724358 GTTGTTTCCGCGTTGCCG 60.724 61.111 4.92 0.00 37.07 5.69
161 162 2.895865 TTGTTTCCGCGTTGCCGA 60.896 55.556 4.92 0.00 35.63 5.54
162 163 2.887889 TTGTTTCCGCGTTGCCGAG 61.888 57.895 4.92 0.00 35.63 4.63
163 164 4.736631 GTTTCCGCGTTGCCGAGC 62.737 66.667 4.92 0.00 35.63 5.03
168 169 3.918220 CGCGTTGCCGAGCAGATC 61.918 66.667 0.00 0.00 40.61 2.75
169 170 3.567797 GCGTTGCCGAGCAGATCC 61.568 66.667 0.00 0.00 40.61 3.36
170 171 2.125552 CGTTGCCGAGCAGATCCA 60.126 61.111 0.00 0.00 40.61 3.41
171 172 1.522355 CGTTGCCGAGCAGATCCAT 60.522 57.895 0.00 0.00 40.61 3.41
172 173 1.493950 CGTTGCCGAGCAGATCCATC 61.494 60.000 0.00 0.00 40.61 3.51
173 174 1.146930 TTGCCGAGCAGATCCATCC 59.853 57.895 0.00 0.00 40.61 3.51
174 175 2.031768 GCCGAGCAGATCCATCCC 59.968 66.667 0.00 0.00 0.00 3.85
175 176 2.746359 CCGAGCAGATCCATCCCC 59.254 66.667 0.00 0.00 0.00 4.81
176 177 1.840650 CCGAGCAGATCCATCCCCT 60.841 63.158 0.00 0.00 0.00 4.79
177 178 1.414061 CCGAGCAGATCCATCCCCTT 61.414 60.000 0.00 0.00 0.00 3.95
178 179 0.034616 CGAGCAGATCCATCCCCTTC 59.965 60.000 0.00 0.00 0.00 3.46
179 180 0.399833 GAGCAGATCCATCCCCTTCC 59.600 60.000 0.00 0.00 0.00 3.46
180 181 1.064824 AGCAGATCCATCCCCTTCCC 61.065 60.000 0.00 0.00 0.00 3.97
181 182 1.064824 GCAGATCCATCCCCTTCCCT 61.065 60.000 0.00 0.00 0.00 4.20
182 183 1.527457 CAGATCCATCCCCTTCCCTT 58.473 55.000 0.00 0.00 0.00 3.95
183 184 1.423161 CAGATCCATCCCCTTCCCTTC 59.577 57.143 0.00 0.00 0.00 3.46
184 185 1.299629 AGATCCATCCCCTTCCCTTCT 59.700 52.381 0.00 0.00 0.00 2.85
185 186 1.702401 GATCCATCCCCTTCCCTTCTC 59.298 57.143 0.00 0.00 0.00 2.87
186 187 0.327576 TCCATCCCCTTCCCTTCTCC 60.328 60.000 0.00 0.00 0.00 3.71
187 188 0.327964 CCATCCCCTTCCCTTCTCCT 60.328 60.000 0.00 0.00 0.00 3.69
188 189 1.135960 CATCCCCTTCCCTTCTCCTC 58.864 60.000 0.00 0.00 0.00 3.71
189 190 1.031112 ATCCCCTTCCCTTCTCCTCT 58.969 55.000 0.00 0.00 0.00 3.69
190 191 0.340208 TCCCCTTCCCTTCTCCTCTC 59.660 60.000 0.00 0.00 0.00 3.20
191 192 0.043334 CCCCTTCCCTTCTCCTCTCA 59.957 60.000 0.00 0.00 0.00 3.27
192 193 1.199615 CCCTTCCCTTCTCCTCTCAC 58.800 60.000 0.00 0.00 0.00 3.51
193 194 1.273552 CCCTTCCCTTCTCCTCTCACT 60.274 57.143 0.00 0.00 0.00 3.41
194 195 2.107366 CCTTCCCTTCTCCTCTCACTC 58.893 57.143 0.00 0.00 0.00 3.51
195 196 2.107366 CTTCCCTTCTCCTCTCACTCC 58.893 57.143 0.00 0.00 0.00 3.85
196 197 0.336737 TCCCTTCTCCTCTCACTCCC 59.663 60.000 0.00 0.00 0.00 4.30
197 198 0.041833 CCCTTCTCCTCTCACTCCCA 59.958 60.000 0.00 0.00 0.00 4.37
198 199 1.190643 CCTTCTCCTCTCACTCCCAC 58.809 60.000 0.00 0.00 0.00 4.61
199 200 1.272985 CCTTCTCCTCTCACTCCCACT 60.273 57.143 0.00 0.00 0.00 4.00
200 201 2.534990 CTTCTCCTCTCACTCCCACTT 58.465 52.381 0.00 0.00 0.00 3.16
201 202 2.223803 TCTCCTCTCACTCCCACTTC 57.776 55.000 0.00 0.00 0.00 3.01
202 203 1.190643 CTCCTCTCACTCCCACTTCC 58.809 60.000 0.00 0.00 0.00 3.46
203 204 0.787084 TCCTCTCACTCCCACTTCCT 59.213 55.000 0.00 0.00 0.00 3.36
204 205 0.901124 CCTCTCACTCCCACTTCCTG 59.099 60.000 0.00 0.00 0.00 3.86
205 206 0.248843 CTCTCACTCCCACTTCCTGC 59.751 60.000 0.00 0.00 0.00 4.85
206 207 0.178921 TCTCACTCCCACTTCCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
207 208 0.036577 CTCACTCCCACTTCCTGCTG 60.037 60.000 0.00 0.00 0.00 4.41
208 209 1.673665 CACTCCCACTTCCTGCTGC 60.674 63.158 0.00 0.00 0.00 5.25
209 210 2.435586 CTCCCACTTCCTGCTGCG 60.436 66.667 0.00 0.00 0.00 5.18
210 211 4.704833 TCCCACTTCCTGCTGCGC 62.705 66.667 0.00 0.00 0.00 6.09
212 213 4.711949 CCACTTCCTGCTGCGCCT 62.712 66.667 4.18 0.00 0.00 5.52
213 214 3.123620 CACTTCCTGCTGCGCCTC 61.124 66.667 4.18 0.00 0.00 4.70
214 215 4.749310 ACTTCCTGCTGCGCCTCG 62.749 66.667 4.18 0.00 0.00 4.63
248 249 4.117661 GGCGTCGTCCGAGCTTCT 62.118 66.667 0.00 0.00 39.56 2.85
249 250 2.577378 GCGTCGTCCGAGCTTCTC 60.577 66.667 0.00 0.00 39.56 2.87
250 251 2.100603 CGTCGTCCGAGCTTCTCC 59.899 66.667 0.00 0.00 39.56 3.71
251 252 2.490685 GTCGTCCGAGCTTCTCCC 59.509 66.667 0.00 0.00 0.00 4.30
252 253 2.754658 TCGTCCGAGCTTCTCCCC 60.755 66.667 0.00 0.00 0.00 4.81
253 254 4.194720 CGTCCGAGCTTCTCCCCG 62.195 72.222 0.00 0.00 0.00 5.73
254 255 4.516195 GTCCGAGCTTCTCCCCGC 62.516 72.222 0.00 0.00 0.00 6.13
303 304 3.741860 CCATTGAGCGGCAGATCC 58.258 61.111 1.45 0.00 30.37 3.36
304 305 1.153107 CCATTGAGCGGCAGATCCA 60.153 57.895 1.45 0.00 34.01 3.41
305 306 0.536687 CCATTGAGCGGCAGATCCAT 60.537 55.000 1.45 0.00 34.01 3.41
306 307 0.873054 CATTGAGCGGCAGATCCATC 59.127 55.000 1.45 0.00 34.01 3.51
307 308 0.250640 ATTGAGCGGCAGATCCATCC 60.251 55.000 1.45 0.00 34.01 3.51
308 309 1.340399 TTGAGCGGCAGATCCATCCT 61.340 55.000 1.45 0.00 34.01 3.24
309 310 1.301558 GAGCGGCAGATCCATCCTG 60.302 63.158 1.45 0.00 34.01 3.86
315 316 3.511182 CAGATCCATCCTGCTAGCG 57.489 57.895 10.77 4.90 0.00 4.26
316 317 0.669932 CAGATCCATCCTGCTAGCGC 60.670 60.000 10.77 0.00 0.00 5.92
317 318 0.831288 AGATCCATCCTGCTAGCGCT 60.831 55.000 17.26 17.26 36.97 5.92
318 319 0.891373 GATCCATCCTGCTAGCGCTA 59.109 55.000 17.75 17.75 36.97 4.26
319 320 0.894141 ATCCATCCTGCTAGCGCTAG 59.106 55.000 34.98 34.98 36.97 3.42
331 332 2.319219 GCGCTAGCTAGGTACGAGT 58.681 57.895 22.10 0.00 41.01 4.18
332 333 1.506493 GCGCTAGCTAGGTACGAGTA 58.494 55.000 22.10 0.00 41.01 2.59
333 334 1.194322 GCGCTAGCTAGGTACGAGTAC 59.806 57.143 22.10 4.90 41.01 2.73
334 335 1.455030 CGCTAGCTAGGTACGAGTACG 59.545 57.143 22.10 9.69 45.75 3.67
335 336 2.748605 GCTAGCTAGGTACGAGTACGA 58.251 52.381 22.10 0.00 42.66 3.43
336 337 3.126831 GCTAGCTAGGTACGAGTACGAA 58.873 50.000 22.10 0.00 42.66 3.85
337 338 3.745458 GCTAGCTAGGTACGAGTACGAAT 59.255 47.826 22.10 0.00 42.66 3.34
338 339 4.143137 GCTAGCTAGGTACGAGTACGAATC 60.143 50.000 22.10 0.00 42.66 2.52
339 340 3.137533 AGCTAGGTACGAGTACGAATCC 58.862 50.000 7.24 0.00 42.66 3.01
340 341 2.225255 GCTAGGTACGAGTACGAATCCC 59.775 54.545 7.24 0.00 42.66 3.85
341 342 1.685148 AGGTACGAGTACGAATCCCC 58.315 55.000 7.24 0.00 42.66 4.81
342 343 1.064463 AGGTACGAGTACGAATCCCCA 60.064 52.381 7.24 0.00 42.66 4.96
343 344 1.066152 GGTACGAGTACGAATCCCCAC 59.934 57.143 7.24 0.00 42.66 4.61
344 345 2.019984 GTACGAGTACGAATCCCCACT 58.980 52.381 0.00 0.00 42.66 4.00
345 346 1.553706 ACGAGTACGAATCCCCACTT 58.446 50.000 0.00 0.00 42.66 3.16
346 347 1.203994 ACGAGTACGAATCCCCACTTG 59.796 52.381 0.00 0.00 42.66 3.16
347 348 1.653151 GAGTACGAATCCCCACTTGC 58.347 55.000 0.00 0.00 0.00 4.01
348 349 0.252197 AGTACGAATCCCCACTTGCC 59.748 55.000 0.00 0.00 0.00 4.52
349 350 0.746923 GTACGAATCCCCACTTGCCC 60.747 60.000 0.00 0.00 0.00 5.36
350 351 0.912487 TACGAATCCCCACTTGCCCT 60.912 55.000 0.00 0.00 0.00 5.19
351 352 1.750399 CGAATCCCCACTTGCCCTG 60.750 63.158 0.00 0.00 0.00 4.45
352 353 2.037847 AATCCCCACTTGCCCTGC 59.962 61.111 0.00 0.00 0.00 4.85
353 354 2.505364 GAATCCCCACTTGCCCTGCT 62.505 60.000 0.00 0.00 0.00 4.24
354 355 2.097978 AATCCCCACTTGCCCTGCTT 62.098 55.000 0.00 0.00 0.00 3.91
355 356 2.505364 ATCCCCACTTGCCCTGCTTC 62.505 60.000 0.00 0.00 0.00 3.86
356 357 2.677875 CCCACTTGCCCTGCTTCC 60.678 66.667 0.00 0.00 0.00 3.46
357 358 3.058160 CCACTTGCCCTGCTTCCG 61.058 66.667 0.00 0.00 0.00 4.30
358 359 2.281761 CACTTGCCCTGCTTCCGT 60.282 61.111 0.00 0.00 0.00 4.69
359 360 2.032681 ACTTGCCCTGCTTCCGTC 59.967 61.111 0.00 0.00 0.00 4.79
360 361 2.348998 CTTGCCCTGCTTCCGTCT 59.651 61.111 0.00 0.00 0.00 4.18
361 362 1.743252 CTTGCCCTGCTTCCGTCTC 60.743 63.158 0.00 0.00 0.00 3.36
362 363 2.177594 CTTGCCCTGCTTCCGTCTCT 62.178 60.000 0.00 0.00 0.00 3.10
363 364 1.768684 TTGCCCTGCTTCCGTCTCTT 61.769 55.000 0.00 0.00 0.00 2.85
364 365 1.003233 GCCCTGCTTCCGTCTCTTT 60.003 57.895 0.00 0.00 0.00 2.52
365 366 1.021920 GCCCTGCTTCCGTCTCTTTC 61.022 60.000 0.00 0.00 0.00 2.62
366 367 0.610687 CCCTGCTTCCGTCTCTTTCT 59.389 55.000 0.00 0.00 0.00 2.52
367 368 1.825474 CCCTGCTTCCGTCTCTTTCTA 59.175 52.381 0.00 0.00 0.00 2.10
368 369 2.159170 CCCTGCTTCCGTCTCTTTCTAG 60.159 54.545 0.00 0.00 0.00 2.43
369 370 2.494073 CCTGCTTCCGTCTCTTTCTAGT 59.506 50.000 0.00 0.00 0.00 2.57
370 371 3.695060 CCTGCTTCCGTCTCTTTCTAGTA 59.305 47.826 0.00 0.00 0.00 1.82
371 372 4.339814 CCTGCTTCCGTCTCTTTCTAGTAT 59.660 45.833 0.00 0.00 0.00 2.12
372 373 5.250235 TGCTTCCGTCTCTTTCTAGTATG 57.750 43.478 0.00 0.00 0.00 2.39
373 374 4.948004 TGCTTCCGTCTCTTTCTAGTATGA 59.052 41.667 0.00 0.00 0.00 2.15
374 375 5.163642 TGCTTCCGTCTCTTTCTAGTATGAC 60.164 44.000 0.00 0.00 0.00 3.06
375 376 5.481200 TTCCGTCTCTTTCTAGTATGACG 57.519 43.478 0.00 0.00 44.32 4.35
376 377 3.311871 TCCGTCTCTTTCTAGTATGACGC 59.688 47.826 15.26 0.00 43.67 5.19
377 378 3.548415 CCGTCTCTTTCTAGTATGACGCC 60.548 52.174 15.26 0.00 43.67 5.68
378 379 3.619729 GTCTCTTTCTAGTATGACGCCG 58.380 50.000 0.00 0.00 0.00 6.46
379 380 2.033049 TCTCTTTCTAGTATGACGCCGC 59.967 50.000 0.00 0.00 0.00 6.53
380 381 1.066605 TCTTTCTAGTATGACGCCGCC 59.933 52.381 0.00 0.00 0.00 6.13
381 382 1.067212 CTTTCTAGTATGACGCCGCCT 59.933 52.381 0.00 0.00 0.00 5.52
382 383 0.666913 TTCTAGTATGACGCCGCCTC 59.333 55.000 0.00 0.00 0.00 4.70
383 384 0.464916 TCTAGTATGACGCCGCCTCA 60.465 55.000 0.00 0.00 0.00 3.86
384 385 0.598562 CTAGTATGACGCCGCCTCAT 59.401 55.000 9.42 9.42 32.91 2.90
385 386 1.000163 CTAGTATGACGCCGCCTCATT 60.000 52.381 9.71 0.00 30.76 2.57
386 387 0.249489 AGTATGACGCCGCCTCATTC 60.249 55.000 9.71 5.72 30.76 2.67
387 388 1.299850 TATGACGCCGCCTCATTCG 60.300 57.895 9.71 0.00 30.76 3.34
388 389 2.011741 TATGACGCCGCCTCATTCGT 62.012 55.000 9.71 0.00 37.92 3.85
389 390 2.813908 GACGCCGCCTCATTCGTT 60.814 61.111 0.00 0.00 35.12 3.85
390 391 3.083600 GACGCCGCCTCATTCGTTG 62.084 63.158 0.00 0.00 35.12 4.10
391 392 4.520846 CGCCGCCTCATTCGTTGC 62.521 66.667 0.00 0.00 0.00 4.17
392 393 3.430862 GCCGCCTCATTCGTTGCA 61.431 61.111 0.00 0.00 0.00 4.08
393 394 2.787249 CCGCCTCATTCGTTGCAG 59.213 61.111 0.00 0.00 0.00 4.41
394 395 2.099062 CGCCTCATTCGTTGCAGC 59.901 61.111 0.00 0.00 0.00 5.25
395 396 2.393768 CGCCTCATTCGTTGCAGCT 61.394 57.895 0.00 0.00 0.00 4.24
396 397 1.136147 GCCTCATTCGTTGCAGCTG 59.864 57.895 10.11 10.11 0.00 4.24
397 398 1.580845 GCCTCATTCGTTGCAGCTGT 61.581 55.000 16.64 0.00 0.00 4.40
398 399 0.877071 CCTCATTCGTTGCAGCTGTT 59.123 50.000 16.64 0.00 0.00 3.16
399 400 1.400629 CCTCATTCGTTGCAGCTGTTG 60.401 52.381 16.64 2.95 0.00 3.33
407 408 3.797546 GCAGCTGTTGCGCTCCTC 61.798 66.667 16.64 0.00 44.09 3.71
408 409 2.047465 CAGCTGTTGCGCTCCTCT 60.047 61.111 9.73 0.00 45.42 3.69
409 410 1.670406 CAGCTGTTGCGCTCCTCTT 60.670 57.895 9.73 0.00 45.42 2.85
410 411 1.072159 AGCTGTTGCGCTCCTCTTT 59.928 52.632 9.73 0.00 45.42 2.52
411 412 0.952984 AGCTGTTGCGCTCCTCTTTC 60.953 55.000 9.73 0.00 45.42 2.62
412 413 1.230635 GCTGTTGCGCTCCTCTTTCA 61.231 55.000 9.73 0.00 0.00 2.69
413 414 0.795085 CTGTTGCGCTCCTCTTTCAG 59.205 55.000 9.73 1.99 0.00 3.02
414 415 0.603707 TGTTGCGCTCCTCTTTCAGG 60.604 55.000 9.73 0.00 45.15 3.86
415 416 0.603975 GTTGCGCTCCTCTTTCAGGT 60.604 55.000 9.73 0.00 43.95 4.00
416 417 0.320771 TTGCGCTCCTCTTTCAGGTC 60.321 55.000 9.73 0.00 43.95 3.85
417 418 1.448717 GCGCTCCTCTTTCAGGTCC 60.449 63.158 0.00 0.00 43.95 4.46
418 419 1.975327 CGCTCCTCTTTCAGGTCCA 59.025 57.895 0.00 0.00 43.95 4.02
419 420 0.390472 CGCTCCTCTTTCAGGTCCAC 60.390 60.000 0.00 0.00 43.95 4.02
420 421 0.687354 GCTCCTCTTTCAGGTCCACA 59.313 55.000 0.00 0.00 43.95 4.17
421 422 1.280421 GCTCCTCTTTCAGGTCCACAT 59.720 52.381 0.00 0.00 43.95 3.21
422 423 2.679349 GCTCCTCTTTCAGGTCCACATC 60.679 54.545 0.00 0.00 43.95 3.06
423 424 1.550524 TCCTCTTTCAGGTCCACATCG 59.449 52.381 0.00 0.00 43.95 3.84
424 425 1.550524 CCTCTTTCAGGTCCACATCGA 59.449 52.381 0.00 0.00 37.53 3.59
425 426 2.611518 CTCTTTCAGGTCCACATCGAC 58.388 52.381 0.00 0.00 0.00 4.20
426 427 1.067846 TCTTTCAGGTCCACATCGACG 60.068 52.381 0.00 0.00 33.30 5.12
427 428 0.963225 TTTCAGGTCCACATCGACGA 59.037 50.000 0.00 0.00 33.30 4.20
428 429 0.242825 TTCAGGTCCACATCGACGAC 59.757 55.000 0.00 0.00 33.30 4.34
429 430 1.514228 CAGGTCCACATCGACGACG 60.514 63.158 0.00 0.00 41.26 5.12
430 431 2.879462 GGTCCACATCGACGACGC 60.879 66.667 0.00 0.00 39.58 5.19
431 432 2.178521 GTCCACATCGACGACGCT 59.821 61.111 0.00 0.00 39.58 5.07
432 433 2.152699 GTCCACATCGACGACGCTG 61.153 63.158 9.42 9.42 40.71 5.18
433 434 2.178273 CCACATCGACGACGCTGA 59.822 61.111 17.16 0.00 38.70 4.26
434 435 1.869574 CCACATCGACGACGCTGAG 60.870 63.158 17.16 9.51 38.70 3.35
435 436 1.869574 CACATCGACGACGCTGAGG 60.870 63.158 17.16 5.80 38.70 3.86
436 437 2.038837 ACATCGACGACGCTGAGGA 61.039 57.895 17.16 0.00 38.70 3.71
437 438 1.136774 CATCGACGACGCTGAGGAA 59.863 57.895 5.21 0.00 37.77 3.36
438 439 0.456142 CATCGACGACGCTGAGGAAA 60.456 55.000 5.21 0.00 37.77 3.13
439 440 0.456221 ATCGACGACGCTGAGGAAAT 59.544 50.000 0.00 0.00 39.58 2.17
440 441 1.089112 TCGACGACGCTGAGGAAATA 58.911 50.000 1.48 0.00 39.58 1.40
441 442 1.063616 TCGACGACGCTGAGGAAATAG 59.936 52.381 1.48 0.00 39.58 1.73
442 443 1.063616 CGACGACGCTGAGGAAATAGA 59.936 52.381 0.00 0.00 0.00 1.98
443 444 2.287069 CGACGACGCTGAGGAAATAGAT 60.287 50.000 0.00 0.00 0.00 1.98
444 445 3.059120 CGACGACGCTGAGGAAATAGATA 60.059 47.826 0.00 0.00 0.00 1.98
445 446 4.554134 CGACGACGCTGAGGAAATAGATAA 60.554 45.833 0.00 0.00 0.00 1.75
446 447 5.455056 ACGACGCTGAGGAAATAGATAAT 57.545 39.130 0.00 0.00 0.00 1.28
447 448 5.462405 ACGACGCTGAGGAAATAGATAATC 58.538 41.667 0.00 0.00 0.00 1.75
448 449 4.859798 CGACGCTGAGGAAATAGATAATCC 59.140 45.833 0.00 0.00 0.00 3.01
449 450 5.564848 CGACGCTGAGGAAATAGATAATCCA 60.565 44.000 0.00 0.00 35.62 3.41
450 451 5.542779 ACGCTGAGGAAATAGATAATCCAC 58.457 41.667 0.00 0.00 35.62 4.02
451 452 5.305644 ACGCTGAGGAAATAGATAATCCACT 59.694 40.000 0.00 0.00 35.62 4.00
452 453 5.866633 CGCTGAGGAAATAGATAATCCACTC 59.133 44.000 0.00 0.00 35.62 3.51
453 454 6.295011 CGCTGAGGAAATAGATAATCCACTCT 60.295 42.308 0.00 0.00 35.62 3.24
454 455 7.449247 GCTGAGGAAATAGATAATCCACTCTT 58.551 38.462 0.00 0.00 35.62 2.85
455 456 7.602265 GCTGAGGAAATAGATAATCCACTCTTC 59.398 40.741 0.00 0.00 35.62 2.87
456 457 8.553085 TGAGGAAATAGATAATCCACTCTTCA 57.447 34.615 0.00 0.00 35.62 3.02
457 458 8.424918 TGAGGAAATAGATAATCCACTCTTCAC 58.575 37.037 0.00 0.00 35.62 3.18
458 459 7.740805 AGGAAATAGATAATCCACTCTTCACC 58.259 38.462 0.00 0.00 35.62 4.02
459 460 7.570607 AGGAAATAGATAATCCACTCTTCACCT 59.429 37.037 0.00 0.00 35.62 4.00
460 461 7.659390 GGAAATAGATAATCCACTCTTCACCTG 59.341 40.741 0.00 0.00 33.30 4.00
461 462 4.414337 AGATAATCCACTCTTCACCTGC 57.586 45.455 0.00 0.00 0.00 4.85
462 463 4.036518 AGATAATCCACTCTTCACCTGCT 58.963 43.478 0.00 0.00 0.00 4.24
463 464 2.486472 AATCCACTCTTCACCTGCTG 57.514 50.000 0.00 0.00 0.00 4.41
464 465 0.035630 ATCCACTCTTCACCTGCTGC 60.036 55.000 0.00 0.00 0.00 5.25
465 466 1.673665 CCACTCTTCACCTGCTGCC 60.674 63.158 0.00 0.00 0.00 4.85
466 467 1.071987 CACTCTTCACCTGCTGCCA 59.928 57.895 0.00 0.00 0.00 4.92
467 468 1.072159 ACTCTTCACCTGCTGCCAC 59.928 57.895 0.00 0.00 0.00 5.01
468 469 2.031012 TCTTCACCTGCTGCCACG 59.969 61.111 0.00 0.00 0.00 4.94
469 470 3.730761 CTTCACCTGCTGCCACGC 61.731 66.667 0.00 0.00 0.00 5.34
489 490 2.516930 CCGCCGGATCCATGCTTT 60.517 61.111 13.41 0.00 0.00 3.51
490 491 2.717485 CGCCGGATCCATGCTTTG 59.283 61.111 13.41 0.00 0.00 2.77
491 492 1.819208 CGCCGGATCCATGCTTTGA 60.819 57.895 13.41 0.00 0.00 2.69
492 493 1.779025 CGCCGGATCCATGCTTTGAG 61.779 60.000 13.41 0.00 0.00 3.02
493 494 1.450531 GCCGGATCCATGCTTTGAGG 61.451 60.000 13.41 2.19 0.00 3.86
494 495 0.107017 CCGGATCCATGCTTTGAGGT 60.107 55.000 13.41 0.00 0.00 3.85
495 496 1.140852 CCGGATCCATGCTTTGAGGTA 59.859 52.381 13.41 0.00 0.00 3.08
496 497 2.213499 CGGATCCATGCTTTGAGGTAC 58.787 52.381 13.41 0.00 0.00 3.34
497 498 2.213499 GGATCCATGCTTTGAGGTACG 58.787 52.381 6.95 0.00 0.00 3.67
498 499 2.213499 GATCCATGCTTTGAGGTACGG 58.787 52.381 0.00 0.00 0.00 4.02
499 500 0.392461 TCCATGCTTTGAGGTACGGC 60.392 55.000 0.00 0.00 0.00 5.68
500 501 1.376609 CCATGCTTTGAGGTACGGCC 61.377 60.000 0.00 0.00 37.58 6.13
501 502 1.077716 ATGCTTTGAGGTACGGCCC 60.078 57.895 0.00 0.00 38.26 5.80
502 503 2.437895 GCTTTGAGGTACGGCCCC 60.438 66.667 0.00 0.00 38.26 5.80
503 504 2.125269 CTTTGAGGTACGGCCCCG 60.125 66.667 4.96 4.96 46.03 5.73
516 517 4.862823 CCCCGTCCCCTCTCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
517 518 3.756783 CCCGTCCCCTCTCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
518 519 2.443016 CCGTCCCCTCTCTCCCTG 60.443 72.222 0.00 0.00 0.00 4.45
519 520 3.151022 CGTCCCCTCTCTCCCTGC 61.151 72.222 0.00 0.00 0.00 4.85
520 521 2.366570 GTCCCCTCTCTCCCTGCT 59.633 66.667 0.00 0.00 0.00 4.24
521 522 1.306568 GTCCCCTCTCTCCCTGCTT 60.307 63.158 0.00 0.00 0.00 3.91
522 523 0.912006 GTCCCCTCTCTCCCTGCTTT 60.912 60.000 0.00 0.00 0.00 3.51
523 524 0.911525 TCCCCTCTCTCCCTGCTTTG 60.912 60.000 0.00 0.00 0.00 2.77
533 534 0.182299 CCCTGCTTTGATCTCCTCCC 59.818 60.000 0.00 0.00 0.00 4.30
565 566 4.166011 GCCGCGCATTGGACTGAC 62.166 66.667 8.75 0.00 0.00 3.51
566 567 2.434884 CCGCGCATTGGACTGACT 60.435 61.111 8.75 0.00 0.00 3.41
567 568 2.743752 CCGCGCATTGGACTGACTG 61.744 63.158 8.75 0.00 0.00 3.51
600 601 0.097325 GACGCTCTGTCTGTACCTCG 59.903 60.000 0.00 0.00 44.58 4.63
601 602 0.605860 ACGCTCTGTCTGTACCTCGT 60.606 55.000 0.00 0.00 0.00 4.18
603 604 0.882474 GCTCTGTCTGTACCTCGTGT 59.118 55.000 0.00 0.00 0.00 4.49
604 605 1.401670 GCTCTGTCTGTACCTCGTGTG 60.402 57.143 0.00 0.00 0.00 3.82
605 606 1.200252 CTCTGTCTGTACCTCGTGTGG 59.800 57.143 0.00 0.00 0.00 4.17
606 607 0.959553 CTGTCTGTACCTCGTGTGGT 59.040 55.000 0.00 0.00 43.66 4.16
607 608 0.671796 TGTCTGTACCTCGTGTGGTG 59.328 55.000 3.94 0.00 41.05 4.17
608 609 0.666577 GTCTGTACCTCGTGTGGTGC 60.667 60.000 3.94 3.31 41.05 5.01
610 611 1.365999 TGTACCTCGTGTGGTGCAG 59.634 57.895 7.63 0.00 45.35 4.41
611 612 2.027625 GTACCTCGTGTGGTGCAGC 61.028 63.158 9.47 9.47 41.42 5.25
612 613 2.503382 TACCTCGTGTGGTGCAGCA 61.503 57.895 15.99 15.99 41.05 4.41
613 614 2.034048 TACCTCGTGTGGTGCAGCAA 62.034 55.000 22.04 8.40 41.05 3.91
614 615 1.968017 CCTCGTGTGGTGCAGCAAT 60.968 57.895 22.04 0.00 0.00 3.56
615 616 1.208358 CTCGTGTGGTGCAGCAATG 59.792 57.895 22.04 15.51 0.00 2.82
616 617 2.191354 CTCGTGTGGTGCAGCAATGG 62.191 60.000 22.04 12.26 0.00 3.16
617 618 2.652530 GTGTGGTGCAGCAATGGG 59.347 61.111 22.04 0.00 0.00 4.00
618 619 3.304721 TGTGGTGCAGCAATGGGC 61.305 61.111 22.04 8.40 45.30 5.36
637 638 3.462678 GTCGGGCTCACCTCCCTC 61.463 72.222 0.00 0.00 41.69 4.30
638 639 3.992641 TCGGGCTCACCTCCCTCA 61.993 66.667 0.00 0.00 41.69 3.86
644 645 0.179936 GCTCACCTCCCTCAATCCAG 59.820 60.000 0.00 0.00 0.00 3.86
651 652 2.433970 CCTCCCTCAATCCAGTCTCTTC 59.566 54.545 0.00 0.00 0.00 2.87
656 657 1.556911 TCAATCCAGTCTCTTCCAGGC 59.443 52.381 0.00 0.00 0.00 4.85
660 661 1.601171 CAGTCTCTTCCAGGCCCAG 59.399 63.158 0.00 0.00 0.00 4.45
661 662 0.906756 CAGTCTCTTCCAGGCCCAGA 60.907 60.000 0.00 0.00 0.00 3.86
662 663 0.043940 AGTCTCTTCCAGGCCCAGAT 59.956 55.000 0.00 0.00 0.00 2.90
663 664 0.467804 GTCTCTTCCAGGCCCAGATC 59.532 60.000 0.00 0.00 0.00 2.75
664 665 0.341258 TCTCTTCCAGGCCCAGATCT 59.659 55.000 0.00 0.00 0.00 2.75
665 666 1.575788 TCTCTTCCAGGCCCAGATCTA 59.424 52.381 0.00 0.00 0.00 1.98
666 667 1.691434 CTCTTCCAGGCCCAGATCTAC 59.309 57.143 0.00 0.00 0.00 2.59
667 668 0.390860 CTTCCAGGCCCAGATCTACG 59.609 60.000 0.00 0.00 0.00 3.51
668 669 0.032515 TTCCAGGCCCAGATCTACGA 60.033 55.000 0.00 0.00 0.00 3.43
669 670 0.755698 TCCAGGCCCAGATCTACGAC 60.756 60.000 0.00 0.00 0.00 4.34
670 671 1.360551 CAGGCCCAGATCTACGACG 59.639 63.158 0.00 0.00 0.00 5.12
671 672 2.027751 GGCCCAGATCTACGACGC 59.972 66.667 0.00 0.00 0.00 5.19
672 673 2.353607 GCCCAGATCTACGACGCG 60.354 66.667 3.53 3.53 0.00 6.01
673 674 2.331805 CCCAGATCTACGACGCGG 59.668 66.667 12.47 0.00 0.00 6.46
674 675 2.184830 CCCAGATCTACGACGCGGA 61.185 63.158 12.47 0.00 0.00 5.54
675 676 1.280142 CCAGATCTACGACGCGGAG 59.720 63.158 12.47 6.26 39.48 4.63
679 680 4.604114 TCTACGACGCGGAGAAGA 57.396 55.556 12.47 5.14 44.36 2.87
680 681 2.845019 TCTACGACGCGGAGAAGAA 58.155 52.632 12.47 0.00 44.36 2.52
681 682 0.725686 TCTACGACGCGGAGAAGAAG 59.274 55.000 12.47 0.00 44.36 2.85
682 683 0.725686 CTACGACGCGGAGAAGAAGA 59.274 55.000 12.47 0.00 40.79 2.87
683 684 1.129998 CTACGACGCGGAGAAGAAGAA 59.870 52.381 12.47 0.00 40.79 2.52
684 685 0.313043 ACGACGCGGAGAAGAAGAAA 59.687 50.000 12.47 0.00 0.00 2.52
685 686 1.067776 ACGACGCGGAGAAGAAGAAAT 60.068 47.619 12.47 0.00 0.00 2.17
686 687 2.163010 ACGACGCGGAGAAGAAGAAATA 59.837 45.455 12.47 0.00 0.00 1.40
687 688 3.176708 CGACGCGGAGAAGAAGAAATAA 58.823 45.455 12.47 0.00 0.00 1.40
688 689 3.611113 CGACGCGGAGAAGAAGAAATAAA 59.389 43.478 12.47 0.00 0.00 1.40
689 690 4.267928 CGACGCGGAGAAGAAGAAATAAAT 59.732 41.667 12.47 0.00 0.00 1.40
690 691 5.457799 CGACGCGGAGAAGAAGAAATAAATA 59.542 40.000 12.47 0.00 0.00 1.40
691 692 6.144080 CGACGCGGAGAAGAAGAAATAAATAT 59.856 38.462 12.47 0.00 0.00 1.28
692 693 7.306632 CGACGCGGAGAAGAAGAAATAAATATT 60.307 37.037 12.47 0.00 0.00 1.28
693 694 7.852516 ACGCGGAGAAGAAGAAATAAATATTC 58.147 34.615 12.47 0.00 0.00 1.75
694 695 7.041984 ACGCGGAGAAGAAGAAATAAATATTCC 60.042 37.037 12.47 0.00 0.00 3.01
695 696 7.042051 CGCGGAGAAGAAGAAATAAATATTCCA 60.042 37.037 0.00 0.00 0.00 3.53
696 697 8.070769 GCGGAGAAGAAGAAATAAATATTCCAC 58.929 37.037 0.00 0.00 0.00 4.02
697 698 9.331282 CGGAGAAGAAGAAATAAATATTCCACT 57.669 33.333 0.00 0.00 0.00 4.00
704 705 9.788960 GAAGAAATAAATATTCCACTGTTCACC 57.211 33.333 0.00 0.00 0.00 4.02
705 706 9.533831 AAGAAATAAATATTCCACTGTTCACCT 57.466 29.630 0.00 0.00 0.00 4.00
706 707 9.178758 AGAAATAAATATTCCACTGTTCACCTC 57.821 33.333 0.00 0.00 0.00 3.85
707 708 7.881775 AATAAATATTCCACTGTTCACCTCC 57.118 36.000 0.00 0.00 0.00 4.30
708 709 3.933861 ATATTCCACTGTTCACCTCCC 57.066 47.619 0.00 0.00 0.00 4.30
709 710 1.747444 ATTCCACTGTTCACCTCCCT 58.253 50.000 0.00 0.00 0.00 4.20
710 711 1.056660 TTCCACTGTTCACCTCCCTC 58.943 55.000 0.00 0.00 0.00 4.30
711 712 0.105194 TCCACTGTTCACCTCCCTCA 60.105 55.000 0.00 0.00 0.00 3.86
712 713 0.764890 CCACTGTTCACCTCCCTCAA 59.235 55.000 0.00 0.00 0.00 3.02
713 714 1.352352 CCACTGTTCACCTCCCTCAAT 59.648 52.381 0.00 0.00 0.00 2.57
714 715 2.616510 CCACTGTTCACCTCCCTCAATC 60.617 54.545 0.00 0.00 0.00 2.67
715 716 1.630878 ACTGTTCACCTCCCTCAATCC 59.369 52.381 0.00 0.00 0.00 3.01
716 717 1.630369 CTGTTCACCTCCCTCAATCCA 59.370 52.381 0.00 0.00 0.00 3.41
717 718 2.240667 CTGTTCACCTCCCTCAATCCAT 59.759 50.000 0.00 0.00 0.00 3.41
718 719 2.649312 TGTTCACCTCCCTCAATCCATT 59.351 45.455 0.00 0.00 0.00 3.16
719 720 3.282885 GTTCACCTCCCTCAATCCATTC 58.717 50.000 0.00 0.00 0.00 2.67
720 721 2.850833 TCACCTCCCTCAATCCATTCT 58.149 47.619 0.00 0.00 0.00 2.40
721 722 2.774234 TCACCTCCCTCAATCCATTCTC 59.226 50.000 0.00 0.00 0.00 2.87
722 723 2.776536 CACCTCCCTCAATCCATTCTCT 59.223 50.000 0.00 0.00 0.00 3.10
723 724 3.201708 CACCTCCCTCAATCCATTCTCTT 59.798 47.826 0.00 0.00 0.00 2.85
724 725 3.854994 ACCTCCCTCAATCCATTCTCTTT 59.145 43.478 0.00 0.00 0.00 2.52
725 726 4.080072 ACCTCCCTCAATCCATTCTCTTTC 60.080 45.833 0.00 0.00 0.00 2.62
726 727 4.080129 CCTCCCTCAATCCATTCTCTTTCA 60.080 45.833 0.00 0.00 0.00 2.69
727 728 5.108187 TCCCTCAATCCATTCTCTTTCAG 57.892 43.478 0.00 0.00 0.00 3.02
728 729 4.080129 TCCCTCAATCCATTCTCTTTCAGG 60.080 45.833 0.00 0.00 0.00 3.86
729 730 4.205587 CCTCAATCCATTCTCTTTCAGGG 58.794 47.826 0.00 0.00 0.00 4.45
759 760 0.708918 CGACGCGGAGAAGAAGAAAC 59.291 55.000 12.47 0.00 0.00 2.78
796 824 1.374758 AGTGTACCAAGCGAGCTGC 60.375 57.895 0.00 0.00 46.98 5.25
862 1236 0.179000 GTTCCATGGGAGCGATCTGT 59.821 55.000 13.02 0.00 31.21 3.41
868 1242 1.319541 TGGGAGCGATCTGTAGCTAC 58.680 55.000 17.30 17.30 44.69 3.58
918 1296 4.290155 TCTTTTTCAGCTTGTCGATTTGC 58.710 39.130 0.00 0.00 0.00 3.68
923 1301 1.068748 CAGCTTGTCGATTTGCAGCTT 60.069 47.619 8.69 0.00 0.00 3.74
927 1305 2.760634 TGTCGATTTGCAGCTTCCTA 57.239 45.000 0.00 0.00 0.00 2.94
1119 1504 2.300152 AGTTCGCAAGGAGATCAAGTCA 59.700 45.455 0.00 0.00 38.47 3.41
1296 1684 4.154942 ACAAAGATGAAAAGCCAGATGGT 58.845 39.130 0.00 0.00 37.57 3.55
1305 1693 5.070180 TGAAAAGCCAGATGGTTTCATTGAA 59.930 36.000 11.57 0.00 43.60 2.69
1754 2151 8.488308 ACTATCCTTAGTGAAATTACCGGTAT 57.512 34.615 16.67 0.00 37.28 2.73
1843 2240 5.278266 GCAGACAAAAGGTACAATAACTGCA 60.278 40.000 0.00 0.00 43.87 4.41
1852 2249 7.141100 AGGTACAATAACTGCATGTGTTTAC 57.859 36.000 10.54 7.66 0.00 2.01
1914 2311 7.760131 ATGTTTCACATGAAAACTTGACAAG 57.240 32.000 13.77 13.77 44.58 3.16
1983 2380 4.473196 TGCATATTGTTTCCACTAGAGGGA 59.527 41.667 6.35 5.14 0.00 4.20
2101 2498 3.855689 ATACAAATTGTGTGGCTGAGC 57.144 42.857 9.15 0.00 41.89 4.26
2120 2517 6.346477 TGAGCGTGAATAGCTTATATTCCT 57.654 37.500 0.00 0.00 46.13 3.36
2123 2520 6.759272 AGCGTGAATAGCTTATATTCCTCAA 58.241 36.000 0.00 0.00 43.24 3.02
2125 2522 6.128526 GCGTGAATAGCTTATATTCCTCAACC 60.129 42.308 0.00 0.00 34.06 3.77
2127 2524 6.369065 GTGAATAGCTTATATTCCTCAACCCG 59.631 42.308 0.00 0.00 34.06 5.28
2144 2541 3.830121 ACCCGGTAAAACAATGTACCAA 58.170 40.909 0.00 0.00 39.92 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.301153 GTTGTTCAGAATTATGAAAAGTTGTGT 57.699 29.630 16.64 0.00 40.72 3.72
22 23 9.520204 AGTTGTTCAGAATTATGAAAAGTTGTG 57.480 29.630 16.64 0.00 40.72 3.33
23 24 9.520204 CAGTTGTTCAGAATTATGAAAAGTTGT 57.480 29.630 16.64 0.00 40.72 3.32
24 25 9.520204 ACAGTTGTTCAGAATTATGAAAAGTTG 57.480 29.630 16.64 14.53 40.72 3.16
26 27 9.520204 CAACAGTTGTTCAGAATTATGAAAAGT 57.480 29.630 16.64 12.55 40.72 2.66
27 28 8.971321 CCAACAGTTGTTCAGAATTATGAAAAG 58.029 33.333 16.64 3.51 40.72 2.27
28 29 7.925483 CCCAACAGTTGTTCAGAATTATGAAAA 59.075 33.333 16.64 9.32 40.72 2.29
29 30 7.432869 CCCAACAGTTGTTCAGAATTATGAAA 58.567 34.615 16.64 5.53 40.72 2.69
30 31 6.516527 GCCCAACAGTTGTTCAGAATTATGAA 60.517 38.462 11.38 11.38 35.83 2.57
31 32 5.048083 GCCCAACAGTTGTTCAGAATTATGA 60.048 40.000 12.42 0.00 35.83 2.15
32 33 5.163513 GCCCAACAGTTGTTCAGAATTATG 58.836 41.667 12.42 0.00 35.83 1.90
33 34 4.220602 GGCCCAACAGTTGTTCAGAATTAT 59.779 41.667 12.42 0.00 35.83 1.28
34 35 3.572255 GGCCCAACAGTTGTTCAGAATTA 59.428 43.478 12.42 0.00 35.83 1.40
35 36 2.365293 GGCCCAACAGTTGTTCAGAATT 59.635 45.455 12.42 0.00 35.83 2.17
36 37 1.963515 GGCCCAACAGTTGTTCAGAAT 59.036 47.619 12.42 0.00 35.83 2.40
37 38 1.341482 TGGCCCAACAGTTGTTCAGAA 60.341 47.619 12.42 0.00 35.83 3.02
38 39 0.257328 TGGCCCAACAGTTGTTCAGA 59.743 50.000 12.42 0.00 35.83 3.27
39 40 0.385390 GTGGCCCAACAGTTGTTCAG 59.615 55.000 12.42 0.00 35.83 3.02
40 41 1.380403 CGTGGCCCAACAGTTGTTCA 61.380 55.000 12.42 4.72 35.83 3.18
41 42 1.358759 CGTGGCCCAACAGTTGTTC 59.641 57.895 12.42 3.34 35.83 3.18
42 43 1.379309 ACGTGGCCCAACAGTTGTT 60.379 52.632 12.42 0.00 39.12 2.83
43 44 2.118404 CACGTGGCCCAACAGTTGT 61.118 57.895 7.95 0.00 0.00 3.32
44 45 2.721231 CACGTGGCCCAACAGTTG 59.279 61.111 7.95 6.28 0.00 3.16
45 46 2.518349 CCACGTGGCCCAACAGTT 60.518 61.111 24.02 0.00 0.00 3.16
46 47 2.847366 AAACCACGTGGCCCAACAGT 62.847 55.000 34.26 9.57 39.32 3.55
47 48 1.671901 AAAACCACGTGGCCCAACAG 61.672 55.000 34.26 8.61 39.32 3.16
48 49 1.682684 AAAACCACGTGGCCCAACA 60.683 52.632 34.26 0.00 39.32 3.33
49 50 1.227118 CAAAACCACGTGGCCCAAC 60.227 57.895 34.26 0.00 39.32 3.77
50 51 2.427245 CCAAAACCACGTGGCCCAA 61.427 57.895 34.26 0.00 39.32 4.12
51 52 2.835431 CCAAAACCACGTGGCCCA 60.835 61.111 34.26 0.00 39.32 5.36
52 53 3.611674 CCCAAAACCACGTGGCCC 61.612 66.667 34.26 0.00 39.32 5.80
53 54 4.293648 GCCCAAAACCACGTGGCC 62.294 66.667 34.26 10.08 39.32 5.36
54 55 4.293648 GGCCCAAAACCACGTGGC 62.294 66.667 34.26 18.23 41.42 5.01
55 56 3.611674 GGGCCCAAAACCACGTGG 61.612 66.667 32.83 32.83 42.17 4.94
56 57 2.835431 TGGGCCCAAAACCACGTG 60.835 61.111 26.33 9.08 0.00 4.49
57 58 2.835895 GTGGGCCCAAAACCACGT 60.836 61.111 30.64 0.00 46.61 4.49
60 61 3.375443 TTCCGTGGGCCCAAAACCA 62.375 57.895 30.64 6.98 0.00 3.67
61 62 2.522193 TTCCGTGGGCCCAAAACC 60.522 61.111 30.64 13.86 0.00 3.27
62 63 2.082629 CTGTTCCGTGGGCCCAAAAC 62.083 60.000 30.64 28.55 0.00 2.43
63 64 1.830408 CTGTTCCGTGGGCCCAAAA 60.830 57.895 30.64 18.78 0.00 2.44
64 65 2.203422 CTGTTCCGTGGGCCCAAA 60.203 61.111 30.64 15.83 0.00 3.28
65 66 3.172106 TCTGTTCCGTGGGCCCAA 61.172 61.111 30.64 8.78 0.00 4.12
66 67 3.636231 CTCTGTTCCGTGGGCCCA 61.636 66.667 24.45 24.45 0.00 5.36
67 68 3.316573 CTCTCTGTTCCGTGGGCCC 62.317 68.421 17.59 17.59 0.00 5.80
68 69 2.232298 CTCTCTCTGTTCCGTGGGCC 62.232 65.000 0.00 0.00 0.00 5.80
69 70 1.216710 CTCTCTCTGTTCCGTGGGC 59.783 63.158 0.00 0.00 0.00 5.36
70 71 0.814457 CTCTCTCTCTGTTCCGTGGG 59.186 60.000 0.00 0.00 0.00 4.61
71 72 1.742831 CTCTCTCTCTCTGTTCCGTGG 59.257 57.143 0.00 0.00 0.00 4.94
72 73 2.677836 CTCTCTCTCTCTCTGTTCCGTG 59.322 54.545 0.00 0.00 0.00 4.94
73 74 2.569853 TCTCTCTCTCTCTCTGTTCCGT 59.430 50.000 0.00 0.00 0.00 4.69
74 75 3.118775 TCTCTCTCTCTCTCTCTGTTCCG 60.119 52.174 0.00 0.00 0.00 4.30
75 76 4.162320 TCTCTCTCTCTCTCTCTCTGTTCC 59.838 50.000 0.00 0.00 0.00 3.62
76 77 5.344743 TCTCTCTCTCTCTCTCTCTGTTC 57.655 47.826 0.00 0.00 0.00 3.18
77 78 5.397221 CCATCTCTCTCTCTCTCTCTCTGTT 60.397 48.000 0.00 0.00 0.00 3.16
78 79 4.102210 CCATCTCTCTCTCTCTCTCTCTGT 59.898 50.000 0.00 0.00 0.00 3.41
79 80 4.504514 CCCATCTCTCTCTCTCTCTCTCTG 60.505 54.167 0.00 0.00 0.00 3.35
80 81 3.649981 CCCATCTCTCTCTCTCTCTCTCT 59.350 52.174 0.00 0.00 0.00 3.10
81 82 3.808618 GCCCATCTCTCTCTCTCTCTCTC 60.809 56.522 0.00 0.00 0.00 3.20
82 83 2.107204 GCCCATCTCTCTCTCTCTCTCT 59.893 54.545 0.00 0.00 0.00 3.10
83 84 2.508526 GCCCATCTCTCTCTCTCTCTC 58.491 57.143 0.00 0.00 0.00 3.20
84 85 1.145738 GGCCCATCTCTCTCTCTCTCT 59.854 57.143 0.00 0.00 0.00 3.10
85 86 1.133513 TGGCCCATCTCTCTCTCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
86 87 0.932955 TGGCCCATCTCTCTCTCTCT 59.067 55.000 0.00 0.00 0.00 3.10
87 88 1.133513 TCTGGCCCATCTCTCTCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
88 89 0.932955 TCTGGCCCATCTCTCTCTCT 59.067 55.000 0.00 0.00 0.00 3.10
89 90 1.039856 GTCTGGCCCATCTCTCTCTC 58.960 60.000 0.00 0.00 0.00 3.20
90 91 0.754957 CGTCTGGCCCATCTCTCTCT 60.755 60.000 0.00 0.00 0.00 3.10
91 92 0.753479 TCGTCTGGCCCATCTCTCTC 60.753 60.000 0.00 0.00 0.00 3.20
92 93 1.040339 GTCGTCTGGCCCATCTCTCT 61.040 60.000 0.00 0.00 0.00 3.10
93 94 1.439644 GTCGTCTGGCCCATCTCTC 59.560 63.158 0.00 0.00 0.00 3.20
94 95 2.418910 CGTCGTCTGGCCCATCTCT 61.419 63.158 0.00 0.00 0.00 3.10
95 96 2.105128 CGTCGTCTGGCCCATCTC 59.895 66.667 0.00 0.00 0.00 2.75
96 97 2.362503 TCGTCGTCTGGCCCATCT 60.363 61.111 0.00 0.00 0.00 2.90
97 98 2.202756 GTCGTCGTCTGGCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
98 99 4.129737 CGTCGTCGTCTGGCCCAT 62.130 66.667 0.00 0.00 0.00 4.00
111 112 4.731503 AAGTCGTCGTCGCCGTCG 62.732 66.667 0.00 0.00 44.86 5.12
112 113 3.164011 CAAGTCGTCGTCGCCGTC 61.164 66.667 0.00 0.00 36.96 4.79
113 114 4.695231 CCAAGTCGTCGTCGCCGT 62.695 66.667 0.00 0.00 36.96 5.68
117 118 3.164011 GTCGCCAAGTCGTCGTCG 61.164 66.667 0.00 0.00 38.55 5.12
118 119 3.164011 CGTCGCCAAGTCGTCGTC 61.164 66.667 0.00 0.00 36.56 4.20
119 120 4.695231 CCGTCGCCAAGTCGTCGT 62.695 66.667 0.00 0.00 38.81 4.34
120 121 4.695231 ACCGTCGCCAAGTCGTCG 62.695 66.667 0.00 0.00 39.79 5.12
121 122 2.804090 GACCGTCGCCAAGTCGTC 60.804 66.667 0.00 0.00 0.00 4.20
122 123 4.695231 CGACCGTCGCCAAGTCGT 62.695 66.667 8.21 0.00 46.23 4.34
124 125 4.353437 ACCGACCGTCGCCAAGTC 62.353 66.667 15.64 0.00 38.82 3.01
125 126 4.353437 GACCGACCGTCGCCAAGT 62.353 66.667 15.64 7.79 38.82 3.16
132 133 1.551503 GGAAACAACGACCGACCGTC 61.552 60.000 2.77 0.00 42.54 4.79
133 134 1.592400 GGAAACAACGACCGACCGT 60.592 57.895 0.00 0.00 45.64 4.83
134 135 3.237290 GGAAACAACGACCGACCG 58.763 61.111 0.00 0.00 0.00 4.79
139 140 1.368374 CAACGCGGAAACAACGACC 60.368 57.895 12.47 0.00 34.03 4.79
140 141 2.001880 GCAACGCGGAAACAACGAC 61.002 57.895 12.47 0.00 34.03 4.34
141 142 2.325166 GCAACGCGGAAACAACGA 59.675 55.556 12.47 0.00 34.03 3.85
142 143 2.724358 GGCAACGCGGAAACAACG 60.724 61.111 12.47 0.00 35.80 4.10
154 155 1.162800 GGATGGATCTGCTCGGCAAC 61.163 60.000 0.00 0.00 38.41 4.17
155 156 1.146930 GGATGGATCTGCTCGGCAA 59.853 57.895 0.00 0.00 38.41 4.52
156 157 2.811514 GGGATGGATCTGCTCGGCA 61.812 63.158 0.00 0.00 36.92 5.69
157 158 2.031768 GGGATGGATCTGCTCGGC 59.968 66.667 0.00 0.00 0.00 5.54
158 159 1.414061 AAGGGGATGGATCTGCTCGG 61.414 60.000 0.00 0.00 0.00 4.63
159 160 0.034616 GAAGGGGATGGATCTGCTCG 59.965 60.000 0.00 0.00 0.00 5.03
160 161 0.399833 GGAAGGGGATGGATCTGCTC 59.600 60.000 0.00 0.00 0.00 4.26
161 162 1.064824 GGGAAGGGGATGGATCTGCT 61.065 60.000 0.00 0.00 0.00 4.24
162 163 1.064824 AGGGAAGGGGATGGATCTGC 61.065 60.000 0.00 0.00 0.00 4.26
163 164 1.423161 GAAGGGAAGGGGATGGATCTG 59.577 57.143 0.00 0.00 0.00 2.90
164 165 1.299629 AGAAGGGAAGGGGATGGATCT 59.700 52.381 0.00 0.00 0.00 2.75
165 166 1.702401 GAGAAGGGAAGGGGATGGATC 59.298 57.143 0.00 0.00 0.00 3.36
166 167 1.700576 GGAGAAGGGAAGGGGATGGAT 60.701 57.143 0.00 0.00 0.00 3.41
167 168 0.327576 GGAGAAGGGAAGGGGATGGA 60.328 60.000 0.00 0.00 0.00 3.41
168 169 0.327964 AGGAGAAGGGAAGGGGATGG 60.328 60.000 0.00 0.00 0.00 3.51
169 170 1.135960 GAGGAGAAGGGAAGGGGATG 58.864 60.000 0.00 0.00 0.00 3.51
170 171 1.031112 AGAGGAGAAGGGAAGGGGAT 58.969 55.000 0.00 0.00 0.00 3.85
171 172 0.340208 GAGAGGAGAAGGGAAGGGGA 59.660 60.000 0.00 0.00 0.00 4.81
172 173 0.043334 TGAGAGGAGAAGGGAAGGGG 59.957 60.000 0.00 0.00 0.00 4.79
173 174 1.199615 GTGAGAGGAGAAGGGAAGGG 58.800 60.000 0.00 0.00 0.00 3.95
174 175 2.107366 GAGTGAGAGGAGAAGGGAAGG 58.893 57.143 0.00 0.00 0.00 3.46
175 176 2.107366 GGAGTGAGAGGAGAAGGGAAG 58.893 57.143 0.00 0.00 0.00 3.46
176 177 1.273324 GGGAGTGAGAGGAGAAGGGAA 60.273 57.143 0.00 0.00 0.00 3.97
177 178 0.336737 GGGAGTGAGAGGAGAAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
178 179 0.041833 TGGGAGTGAGAGGAGAAGGG 59.958 60.000 0.00 0.00 0.00 3.95
179 180 1.190643 GTGGGAGTGAGAGGAGAAGG 58.809 60.000 0.00 0.00 0.00 3.46
180 181 2.230130 AGTGGGAGTGAGAGGAGAAG 57.770 55.000 0.00 0.00 0.00 2.85
181 182 2.530701 GAAGTGGGAGTGAGAGGAGAA 58.469 52.381 0.00 0.00 0.00 2.87
182 183 1.272760 GGAAGTGGGAGTGAGAGGAGA 60.273 57.143 0.00 0.00 0.00 3.71
183 184 1.190643 GGAAGTGGGAGTGAGAGGAG 58.809 60.000 0.00 0.00 0.00 3.69
184 185 0.787084 AGGAAGTGGGAGTGAGAGGA 59.213 55.000 0.00 0.00 0.00 3.71
185 186 0.901124 CAGGAAGTGGGAGTGAGAGG 59.099 60.000 0.00 0.00 0.00 3.69
186 187 0.248843 GCAGGAAGTGGGAGTGAGAG 59.751 60.000 0.00 0.00 0.00 3.20
187 188 0.178921 AGCAGGAAGTGGGAGTGAGA 60.179 55.000 0.00 0.00 0.00 3.27
188 189 0.036577 CAGCAGGAAGTGGGAGTGAG 60.037 60.000 0.00 0.00 0.00 3.51
189 190 2.061220 CAGCAGGAAGTGGGAGTGA 58.939 57.895 0.00 0.00 0.00 3.41
190 191 1.673665 GCAGCAGGAAGTGGGAGTG 60.674 63.158 0.00 0.00 0.00 3.51
191 192 2.753029 GCAGCAGGAAGTGGGAGT 59.247 61.111 0.00 0.00 0.00 3.85
192 193 2.435586 CGCAGCAGGAAGTGGGAG 60.436 66.667 0.00 0.00 0.00 4.30
231 232 4.117661 AGAAGCTCGGACGACGCC 62.118 66.667 0.00 0.00 43.86 5.68
232 233 2.577378 GAGAAGCTCGGACGACGC 60.577 66.667 0.00 7.68 43.86 5.19
233 234 2.100603 GGAGAAGCTCGGACGACG 59.899 66.667 0.00 0.00 46.11 5.12
234 235 2.490685 GGGAGAAGCTCGGACGAC 59.509 66.667 0.00 0.00 0.00 4.34
235 236 2.754658 GGGGAGAAGCTCGGACGA 60.755 66.667 0.00 0.00 0.00 4.20
236 237 4.194720 CGGGGAGAAGCTCGGACG 62.195 72.222 0.00 0.00 0.00 4.79
237 238 4.516195 GCGGGGAGAAGCTCGGAC 62.516 72.222 0.00 0.00 0.00 4.79
286 287 0.536687 ATGGATCTGCCGCTCAATGG 60.537 55.000 0.00 0.00 40.66 3.16
287 288 0.873054 GATGGATCTGCCGCTCAATG 59.127 55.000 0.00 0.00 40.66 2.82
288 289 0.250640 GGATGGATCTGCCGCTCAAT 60.251 55.000 0.00 0.00 40.66 2.57
289 290 1.146930 GGATGGATCTGCCGCTCAA 59.853 57.895 0.00 0.00 40.66 3.02
290 291 1.763655 AGGATGGATCTGCCGCTCA 60.764 57.895 0.00 0.00 40.66 4.26
291 292 1.301558 CAGGATGGATCTGCCGCTC 60.302 63.158 0.00 0.00 40.66 5.03
292 293 2.827423 CAGGATGGATCTGCCGCT 59.173 61.111 0.00 0.00 40.66 5.52
297 298 0.669932 GCGCTAGCAGGATGGATCTG 60.670 60.000 16.45 0.00 44.35 2.90
298 299 1.670590 GCGCTAGCAGGATGGATCT 59.329 57.895 16.45 0.00 44.35 2.75
299 300 4.275524 GCGCTAGCAGGATGGATC 57.724 61.111 16.45 0.00 44.35 3.36
311 312 1.069823 ACTCGTACCTAGCTAGCGCTA 59.930 52.381 17.75 17.75 46.79 4.26
313 314 1.194322 GTACTCGTACCTAGCTAGCGC 59.806 57.143 15.74 0.00 0.00 5.92
314 315 1.455030 CGTACTCGTACCTAGCTAGCG 59.545 57.143 15.74 13.40 32.61 4.26
315 316 2.748605 TCGTACTCGTACCTAGCTAGC 58.251 52.381 15.74 6.62 38.33 3.42
316 317 4.388469 GGATTCGTACTCGTACCTAGCTAG 59.612 50.000 14.20 14.20 38.33 3.42
317 318 4.310769 GGATTCGTACTCGTACCTAGCTA 58.689 47.826 0.00 0.00 38.33 3.32
318 319 3.137533 GGATTCGTACTCGTACCTAGCT 58.862 50.000 0.00 0.00 38.33 3.32
319 320 2.225255 GGGATTCGTACTCGTACCTAGC 59.775 54.545 1.92 0.00 38.33 3.42
320 321 2.810852 GGGGATTCGTACTCGTACCTAG 59.189 54.545 1.92 0.00 38.33 3.02
321 322 2.172505 TGGGGATTCGTACTCGTACCTA 59.827 50.000 1.92 0.00 38.33 3.08
322 323 1.064463 TGGGGATTCGTACTCGTACCT 60.064 52.381 1.92 0.00 38.33 3.08
323 324 1.066152 GTGGGGATTCGTACTCGTACC 59.934 57.143 1.92 0.00 38.33 3.34
324 325 2.019984 AGTGGGGATTCGTACTCGTAC 58.980 52.381 0.00 0.00 38.33 3.67
325 326 2.424601 CAAGTGGGGATTCGTACTCGTA 59.575 50.000 0.00 0.00 38.33 3.43
326 327 1.203994 CAAGTGGGGATTCGTACTCGT 59.796 52.381 0.00 0.00 38.33 4.18
327 328 1.922570 CAAGTGGGGATTCGTACTCG 58.077 55.000 0.00 0.00 38.55 4.18
328 329 1.653151 GCAAGTGGGGATTCGTACTC 58.347 55.000 0.00 0.00 0.00 2.59
329 330 0.252197 GGCAAGTGGGGATTCGTACT 59.748 55.000 0.00 0.00 0.00 2.73
330 331 0.746923 GGGCAAGTGGGGATTCGTAC 60.747 60.000 0.00 0.00 0.00 3.67
331 332 0.912487 AGGGCAAGTGGGGATTCGTA 60.912 55.000 0.00 0.00 0.00 3.43
332 333 2.231380 AGGGCAAGTGGGGATTCGT 61.231 57.895 0.00 0.00 0.00 3.85
333 334 1.750399 CAGGGCAAGTGGGGATTCG 60.750 63.158 0.00 0.00 0.00 3.34
334 335 2.054453 GCAGGGCAAGTGGGGATTC 61.054 63.158 0.00 0.00 0.00 2.52
335 336 2.037847 GCAGGGCAAGTGGGGATT 59.962 61.111 0.00 0.00 0.00 3.01
336 337 2.505364 GAAGCAGGGCAAGTGGGGAT 62.505 60.000 0.00 0.00 0.00 3.85
337 338 3.185203 AAGCAGGGCAAGTGGGGA 61.185 61.111 0.00 0.00 0.00 4.81
338 339 2.677875 GAAGCAGGGCAAGTGGGG 60.678 66.667 0.00 0.00 0.00 4.96
339 340 2.677875 GGAAGCAGGGCAAGTGGG 60.678 66.667 0.00 0.00 0.00 4.61
340 341 3.058160 CGGAAGCAGGGCAAGTGG 61.058 66.667 0.00 0.00 0.00 4.00
341 342 2.281761 ACGGAAGCAGGGCAAGTG 60.282 61.111 0.00 0.00 0.00 3.16
342 343 2.032681 GACGGAAGCAGGGCAAGT 59.967 61.111 0.00 0.00 0.00 3.16
343 344 1.743252 GAGACGGAAGCAGGGCAAG 60.743 63.158 0.00 0.00 0.00 4.01
344 345 1.768684 AAGAGACGGAAGCAGGGCAA 61.769 55.000 0.00 0.00 0.00 4.52
345 346 1.768684 AAAGAGACGGAAGCAGGGCA 61.769 55.000 0.00 0.00 0.00 5.36
346 347 1.003233 AAAGAGACGGAAGCAGGGC 60.003 57.895 0.00 0.00 0.00 5.19
347 348 0.610687 AGAAAGAGACGGAAGCAGGG 59.389 55.000 0.00 0.00 0.00 4.45
348 349 2.494073 ACTAGAAAGAGACGGAAGCAGG 59.506 50.000 0.00 0.00 0.00 4.85
349 350 3.859411 ACTAGAAAGAGACGGAAGCAG 57.141 47.619 0.00 0.00 0.00 4.24
350 351 4.948004 TCATACTAGAAAGAGACGGAAGCA 59.052 41.667 0.00 0.00 0.00 3.91
351 352 5.275494 GTCATACTAGAAAGAGACGGAAGC 58.725 45.833 0.00 0.00 0.00 3.86
352 353 5.503498 CGTCATACTAGAAAGAGACGGAAG 58.497 45.833 14.98 0.00 39.71 3.46
353 354 4.201891 GCGTCATACTAGAAAGAGACGGAA 60.202 45.833 20.21 0.00 41.57 4.30
354 355 3.311871 GCGTCATACTAGAAAGAGACGGA 59.688 47.826 20.21 0.00 41.57 4.69
355 356 3.548415 GGCGTCATACTAGAAAGAGACGG 60.548 52.174 20.21 9.47 41.57 4.79
356 357 3.619729 GGCGTCATACTAGAAAGAGACG 58.380 50.000 17.02 17.02 42.77 4.18
357 358 3.619729 CGGCGTCATACTAGAAAGAGAC 58.380 50.000 0.00 0.00 0.00 3.36
358 359 2.033049 GCGGCGTCATACTAGAAAGAGA 59.967 50.000 9.37 0.00 0.00 3.10
359 360 2.386249 GCGGCGTCATACTAGAAAGAG 58.614 52.381 9.37 0.00 0.00 2.85
360 361 1.066605 GGCGGCGTCATACTAGAAAGA 59.933 52.381 6.63 0.00 0.00 2.52
361 362 1.067212 AGGCGGCGTCATACTAGAAAG 59.933 52.381 16.23 0.00 0.00 2.62
362 363 1.066605 GAGGCGGCGTCATACTAGAAA 59.933 52.381 16.23 0.00 0.00 2.52
363 364 0.666913 GAGGCGGCGTCATACTAGAA 59.333 55.000 16.23 0.00 0.00 2.10
364 365 0.464916 TGAGGCGGCGTCATACTAGA 60.465 55.000 20.30 0.00 0.00 2.43
365 366 0.598562 ATGAGGCGGCGTCATACTAG 59.401 55.000 30.30 0.00 37.24 2.57
366 367 1.000607 GAATGAGGCGGCGTCATACTA 60.001 52.381 31.16 9.90 37.89 1.82
367 368 0.249489 GAATGAGGCGGCGTCATACT 60.249 55.000 31.16 20.40 37.89 2.12
368 369 1.548973 CGAATGAGGCGGCGTCATAC 61.549 60.000 31.16 5.26 37.89 2.39
369 370 1.299850 CGAATGAGGCGGCGTCATA 60.300 57.895 31.16 11.26 37.89 2.15
370 371 2.586079 CGAATGAGGCGGCGTCAT 60.586 61.111 27.20 27.20 40.09 3.06
371 372 3.583276 AACGAATGAGGCGGCGTCA 62.583 57.895 25.30 25.30 35.74 4.35
372 373 2.813908 AACGAATGAGGCGGCGTC 60.814 61.111 15.31 15.31 35.74 5.19
373 374 3.118454 CAACGAATGAGGCGGCGT 61.118 61.111 9.37 0.00 38.81 5.68
374 375 4.520846 GCAACGAATGAGGCGGCG 62.521 66.667 0.51 0.51 0.00 6.46
375 376 3.386867 CTGCAACGAATGAGGCGGC 62.387 63.158 0.00 0.00 0.00 6.53
376 377 2.787249 CTGCAACGAATGAGGCGG 59.213 61.111 0.00 0.00 0.00 6.13
377 378 2.099062 GCTGCAACGAATGAGGCG 59.901 61.111 0.00 0.00 0.00 5.52
378 379 1.136147 CAGCTGCAACGAATGAGGC 59.864 57.895 0.00 0.00 0.00 4.70
379 380 0.877071 AACAGCTGCAACGAATGAGG 59.123 50.000 15.27 0.00 0.00 3.86
380 381 1.959747 CAACAGCTGCAACGAATGAG 58.040 50.000 15.27 0.00 0.00 2.90
393 394 1.230635 TGAAAGAGGAGCGCAACAGC 61.231 55.000 11.47 0.00 37.41 4.40
394 395 0.795085 CTGAAAGAGGAGCGCAACAG 59.205 55.000 11.47 3.13 34.07 3.16
395 396 0.603707 CCTGAAAGAGGAGCGCAACA 60.604 55.000 11.47 0.00 46.33 3.33
396 397 0.603975 ACCTGAAAGAGGAGCGCAAC 60.604 55.000 11.47 0.54 46.33 4.17
397 398 0.320771 GACCTGAAAGAGGAGCGCAA 60.321 55.000 11.47 0.00 46.33 4.85
398 399 1.293498 GACCTGAAAGAGGAGCGCA 59.707 57.895 11.47 0.00 46.33 6.09
399 400 1.448717 GGACCTGAAAGAGGAGCGC 60.449 63.158 0.00 0.00 46.33 5.92
400 401 0.390472 GTGGACCTGAAAGAGGAGCG 60.390 60.000 0.00 0.00 46.33 5.03
401 402 0.687354 TGTGGACCTGAAAGAGGAGC 59.313 55.000 0.00 0.00 46.33 4.70
402 403 2.417924 CGATGTGGACCTGAAAGAGGAG 60.418 54.545 0.00 0.00 46.33 3.69
403 404 1.550524 CGATGTGGACCTGAAAGAGGA 59.449 52.381 0.00 0.00 46.33 3.71
405 406 2.611518 GTCGATGTGGACCTGAAAGAG 58.388 52.381 0.00 0.00 34.07 2.85
406 407 1.067846 CGTCGATGTGGACCTGAAAGA 60.068 52.381 0.00 0.00 34.07 2.52
407 408 1.067846 TCGTCGATGTGGACCTGAAAG 60.068 52.381 4.21 0.00 33.30 2.62
408 409 0.963225 TCGTCGATGTGGACCTGAAA 59.037 50.000 4.21 0.00 33.30 2.69
409 410 0.242825 GTCGTCGATGTGGACCTGAA 59.757 55.000 4.21 0.00 33.30 3.02
410 411 1.880894 GTCGTCGATGTGGACCTGA 59.119 57.895 4.21 0.00 33.30 3.86
411 412 1.514228 CGTCGTCGATGTGGACCTG 60.514 63.158 6.28 0.00 39.71 4.00
412 413 2.875485 CGTCGTCGATGTGGACCT 59.125 61.111 6.28 0.00 39.71 3.85
413 414 2.879462 GCGTCGTCGATGTGGACC 60.879 66.667 15.55 0.00 39.71 4.46
414 415 2.152699 CAGCGTCGTCGATGTGGAC 61.153 63.158 15.55 2.00 46.37 4.02
415 416 2.178273 CAGCGTCGTCGATGTGGA 59.822 61.111 15.55 0.00 46.37 4.02
420 421 0.456221 ATTTCCTCAGCGTCGTCGAT 59.544 50.000 6.17 0.00 39.71 3.59
421 422 1.063616 CTATTTCCTCAGCGTCGTCGA 59.936 52.381 6.17 0.00 39.71 4.20
422 423 1.063616 TCTATTTCCTCAGCGTCGTCG 59.936 52.381 0.00 0.00 40.37 5.12
423 424 2.846039 TCTATTTCCTCAGCGTCGTC 57.154 50.000 0.00 0.00 0.00 4.20
424 425 4.913335 TTATCTATTTCCTCAGCGTCGT 57.087 40.909 0.00 0.00 0.00 4.34
425 426 4.859798 GGATTATCTATTTCCTCAGCGTCG 59.140 45.833 0.00 0.00 0.00 5.12
426 427 5.635700 GTGGATTATCTATTTCCTCAGCGTC 59.364 44.000 0.00 0.00 0.00 5.19
427 428 5.305644 AGTGGATTATCTATTTCCTCAGCGT 59.694 40.000 0.00 0.00 0.00 5.07
428 429 5.788450 AGTGGATTATCTATTTCCTCAGCG 58.212 41.667 0.00 0.00 0.00 5.18
429 430 7.003402 AGAGTGGATTATCTATTTCCTCAGC 57.997 40.000 0.00 0.00 0.00 4.26
430 431 8.646004 TGAAGAGTGGATTATCTATTTCCTCAG 58.354 37.037 0.00 0.00 0.00 3.35
431 432 8.424918 GTGAAGAGTGGATTATCTATTTCCTCA 58.575 37.037 0.00 0.00 0.00 3.86
432 433 7.875554 GGTGAAGAGTGGATTATCTATTTCCTC 59.124 40.741 0.00 0.00 0.00 3.71
433 434 7.570607 AGGTGAAGAGTGGATTATCTATTTCCT 59.429 37.037 0.00 0.00 0.00 3.36
434 435 7.659390 CAGGTGAAGAGTGGATTATCTATTTCC 59.341 40.741 0.00 0.00 0.00 3.13
435 436 7.172361 GCAGGTGAAGAGTGGATTATCTATTTC 59.828 40.741 0.00 0.00 0.00 2.17
436 437 6.995091 GCAGGTGAAGAGTGGATTATCTATTT 59.005 38.462 0.00 0.00 0.00 1.40
437 438 6.328672 AGCAGGTGAAGAGTGGATTATCTATT 59.671 38.462 0.00 0.00 0.00 1.73
438 439 5.843421 AGCAGGTGAAGAGTGGATTATCTAT 59.157 40.000 0.00 0.00 0.00 1.98
439 440 5.069648 CAGCAGGTGAAGAGTGGATTATCTA 59.930 44.000 0.00 0.00 0.00 1.98
440 441 4.036518 AGCAGGTGAAGAGTGGATTATCT 58.963 43.478 0.00 0.00 0.00 1.98
441 442 4.125703 CAGCAGGTGAAGAGTGGATTATC 58.874 47.826 0.00 0.00 0.00 1.75
442 443 3.683847 GCAGCAGGTGAAGAGTGGATTAT 60.684 47.826 3.02 0.00 0.00 1.28
443 444 2.355108 GCAGCAGGTGAAGAGTGGATTA 60.355 50.000 3.02 0.00 0.00 1.75
444 445 1.612726 GCAGCAGGTGAAGAGTGGATT 60.613 52.381 3.02 0.00 0.00 3.01
445 446 0.035630 GCAGCAGGTGAAGAGTGGAT 60.036 55.000 3.02 0.00 0.00 3.41
446 447 1.372683 GCAGCAGGTGAAGAGTGGA 59.627 57.895 3.02 0.00 0.00 4.02
447 448 1.673665 GGCAGCAGGTGAAGAGTGG 60.674 63.158 3.02 0.00 0.00 4.00
448 449 1.071987 TGGCAGCAGGTGAAGAGTG 59.928 57.895 3.02 0.00 0.00 3.51
449 450 1.072159 GTGGCAGCAGGTGAAGAGT 59.928 57.895 3.02 0.00 0.00 3.24
450 451 2.031516 CGTGGCAGCAGGTGAAGAG 61.032 63.158 3.02 0.00 0.00 2.85
451 452 2.031012 CGTGGCAGCAGGTGAAGA 59.969 61.111 3.02 0.00 0.00 2.87
452 453 3.730761 GCGTGGCAGCAGGTGAAG 61.731 66.667 3.02 0.00 37.05 3.02
472 473 2.516930 AAAGCATGGATCCGGCGG 60.517 61.111 22.51 22.51 0.00 6.13
473 474 1.779025 CTCAAAGCATGGATCCGGCG 61.779 60.000 19.09 0.00 0.00 6.46
474 475 1.450531 CCTCAAAGCATGGATCCGGC 61.451 60.000 17.95 17.95 0.00 6.13
475 476 0.107017 ACCTCAAAGCATGGATCCGG 60.107 55.000 7.39 0.00 0.00 5.14
476 477 2.213499 GTACCTCAAAGCATGGATCCG 58.787 52.381 7.39 0.00 0.00 4.18
477 478 2.213499 CGTACCTCAAAGCATGGATCC 58.787 52.381 4.20 4.20 0.00 3.36
478 479 2.213499 CCGTACCTCAAAGCATGGATC 58.787 52.381 0.00 0.00 0.00 3.36
479 480 1.747206 GCCGTACCTCAAAGCATGGAT 60.747 52.381 0.00 0.00 0.00 3.41
480 481 0.392461 GCCGTACCTCAAAGCATGGA 60.392 55.000 0.00 0.00 0.00 3.41
481 482 1.376609 GGCCGTACCTCAAAGCATGG 61.377 60.000 0.00 0.00 34.51 3.66
482 483 1.376609 GGGCCGTACCTCAAAGCATG 61.377 60.000 0.00 0.00 39.10 4.06
483 484 1.077716 GGGCCGTACCTCAAAGCAT 60.078 57.895 0.00 0.00 39.10 3.79
484 485 2.349755 GGGCCGTACCTCAAAGCA 59.650 61.111 0.00 0.00 39.10 3.91
485 486 2.437895 GGGGCCGTACCTCAAAGC 60.438 66.667 0.00 0.00 39.64 3.51
486 487 2.125269 CGGGGCCGTACCTCAAAG 60.125 66.667 0.00 0.00 40.00 2.77
499 500 4.862823 GGGAGAGAGGGGACGGGG 62.863 77.778 0.00 0.00 0.00 5.73
500 501 3.756783 AGGGAGAGAGGGGACGGG 61.757 72.222 0.00 0.00 0.00 5.28
501 502 2.443016 CAGGGAGAGAGGGGACGG 60.443 72.222 0.00 0.00 0.00 4.79
502 503 3.151022 GCAGGGAGAGAGGGGACG 61.151 72.222 0.00 0.00 0.00 4.79
503 504 0.912006 AAAGCAGGGAGAGAGGGGAC 60.912 60.000 0.00 0.00 0.00 4.46
504 505 0.911525 CAAAGCAGGGAGAGAGGGGA 60.912 60.000 0.00 0.00 0.00 4.81
505 506 0.911525 TCAAAGCAGGGAGAGAGGGG 60.912 60.000 0.00 0.00 0.00 4.79
506 507 1.140652 GATCAAAGCAGGGAGAGAGGG 59.859 57.143 0.00 0.00 0.00 4.30
507 508 2.102925 GAGATCAAAGCAGGGAGAGAGG 59.897 54.545 0.00 0.00 0.00 3.69
508 509 2.102925 GGAGATCAAAGCAGGGAGAGAG 59.897 54.545 0.00 0.00 0.00 3.20
509 510 2.114616 GGAGATCAAAGCAGGGAGAGA 58.885 52.381 0.00 0.00 0.00 3.10
510 511 2.102925 GAGGAGATCAAAGCAGGGAGAG 59.897 54.545 0.00 0.00 0.00 3.20
511 512 2.114616 GAGGAGATCAAAGCAGGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
512 513 1.140652 GGAGGAGATCAAAGCAGGGAG 59.859 57.143 0.00 0.00 0.00 4.30
513 514 1.207791 GGAGGAGATCAAAGCAGGGA 58.792 55.000 0.00 0.00 0.00 4.20
514 515 0.182299 GGGAGGAGATCAAAGCAGGG 59.818 60.000 0.00 0.00 0.00 4.45
515 516 0.914644 TGGGAGGAGATCAAAGCAGG 59.085 55.000 0.00 0.00 0.00 4.85
516 517 2.573369 CATGGGAGGAGATCAAAGCAG 58.427 52.381 0.00 0.00 0.00 4.24
517 518 1.409241 GCATGGGAGGAGATCAAAGCA 60.409 52.381 0.00 0.00 0.00 3.91
518 519 1.316651 GCATGGGAGGAGATCAAAGC 58.683 55.000 0.00 0.00 0.00 3.51
519 520 1.813092 CGGCATGGGAGGAGATCAAAG 60.813 57.143 0.00 0.00 0.00 2.77
520 521 0.181114 CGGCATGGGAGGAGATCAAA 59.819 55.000 0.00 0.00 0.00 2.69
521 522 1.832219 CGGCATGGGAGGAGATCAA 59.168 57.895 0.00 0.00 0.00 2.57
522 523 2.811514 GCGGCATGGGAGGAGATCA 61.812 63.158 0.00 0.00 0.00 2.92
523 524 2.031768 GCGGCATGGGAGGAGATC 59.968 66.667 0.00 0.00 0.00 2.75
578 579 1.511768 GTACAGACAGAGCGTCCCC 59.488 63.158 0.00 0.00 46.69 4.81
581 582 0.097325 CGAGGTACAGACAGAGCGTC 59.903 60.000 0.00 0.00 45.77 5.19
591 592 0.667487 CTGCACCACACGAGGTACAG 60.667 60.000 10.61 10.61 44.29 2.74
592 593 1.365999 CTGCACCACACGAGGTACA 59.634 57.895 0.00 0.00 40.77 2.90
593 594 2.027625 GCTGCACCACACGAGGTAC 61.028 63.158 0.00 0.00 40.77 3.34
594 595 2.034048 TTGCTGCACCACACGAGGTA 62.034 55.000 0.00 0.00 40.77 3.08
595 596 2.680974 ATTGCTGCACCACACGAGGT 62.681 55.000 0.00 0.00 44.48 3.85
596 597 1.968017 ATTGCTGCACCACACGAGG 60.968 57.895 0.00 0.00 0.00 4.63
599 600 2.256158 CCATTGCTGCACCACACG 59.744 61.111 0.00 0.00 0.00 4.49
600 601 2.652530 CCCATTGCTGCACCACAC 59.347 61.111 0.00 0.00 0.00 3.82
601 602 3.304721 GCCCATTGCTGCACCACA 61.305 61.111 0.00 0.00 36.87 4.17
605 606 4.120331 GACCGCCCATTGCTGCAC 62.120 66.667 0.00 0.00 38.05 4.57
635 636 2.419851 GCCTGGAAGAGACTGGATTGAG 60.420 54.545 0.00 0.00 34.07 3.02
637 638 1.407989 GGCCTGGAAGAGACTGGATTG 60.408 57.143 0.00 0.00 34.07 2.67
638 639 0.915364 GGCCTGGAAGAGACTGGATT 59.085 55.000 0.00 0.00 34.07 3.01
644 645 0.467804 GATCTGGGCCTGGAAGAGAC 59.532 60.000 10.79 0.00 34.07 3.36
651 652 1.742768 GTCGTAGATCTGGGCCTGG 59.257 63.158 10.79 0.45 40.67 4.45
656 657 2.119147 CTCCGCGTCGTAGATCTGGG 62.119 65.000 5.18 0.00 40.67 4.45
660 661 0.935898 TCTTCTCCGCGTCGTAGATC 59.064 55.000 4.92 0.00 40.67 2.75
661 662 1.331138 CTTCTTCTCCGCGTCGTAGAT 59.669 52.381 4.92 0.00 40.67 1.98
662 663 0.725686 CTTCTTCTCCGCGTCGTAGA 59.274 55.000 4.92 1.03 0.00 2.59
663 664 0.725686 TCTTCTTCTCCGCGTCGTAG 59.274 55.000 4.92 0.00 0.00 3.51
664 665 1.159285 TTCTTCTTCTCCGCGTCGTA 58.841 50.000 4.92 0.00 0.00 3.43
665 666 0.313043 TTTCTTCTTCTCCGCGTCGT 59.687 50.000 4.92 0.00 0.00 4.34
666 667 1.630148 ATTTCTTCTTCTCCGCGTCG 58.370 50.000 4.92 0.00 0.00 5.12
667 668 5.720261 ATTTATTTCTTCTTCTCCGCGTC 57.280 39.130 4.92 0.00 0.00 5.19
668 669 7.041984 GGAATATTTATTTCTTCTTCTCCGCGT 60.042 37.037 4.92 0.00 0.00 6.01
669 670 7.042051 TGGAATATTTATTTCTTCTTCTCCGCG 60.042 37.037 0.00 0.00 0.00 6.46
670 671 8.070769 GTGGAATATTTATTTCTTCTTCTCCGC 58.929 37.037 0.00 0.00 0.00 5.54
671 672 9.331282 AGTGGAATATTTATTTCTTCTTCTCCG 57.669 33.333 0.00 0.00 0.00 4.63
678 679 9.788960 GGTGAACAGTGGAATATTTATTTCTTC 57.211 33.333 0.00 0.00 0.00 2.87
679 680 9.533831 AGGTGAACAGTGGAATATTTATTTCTT 57.466 29.630 0.00 0.00 0.00 2.52
680 681 9.178758 GAGGTGAACAGTGGAATATTTATTTCT 57.821 33.333 0.00 0.00 0.00 2.52
681 682 8.406297 GGAGGTGAACAGTGGAATATTTATTTC 58.594 37.037 0.00 0.00 0.00 2.17
682 683 7.342026 GGGAGGTGAACAGTGGAATATTTATTT 59.658 37.037 0.00 0.00 0.00 1.40
683 684 6.833933 GGGAGGTGAACAGTGGAATATTTATT 59.166 38.462 0.00 0.00 0.00 1.40
684 685 6.160459 AGGGAGGTGAACAGTGGAATATTTAT 59.840 38.462 0.00 0.00 0.00 1.40
685 686 5.491078 AGGGAGGTGAACAGTGGAATATTTA 59.509 40.000 0.00 0.00 0.00 1.40
686 687 4.292306 AGGGAGGTGAACAGTGGAATATTT 59.708 41.667 0.00 0.00 0.00 1.40
687 688 3.852578 AGGGAGGTGAACAGTGGAATATT 59.147 43.478 0.00 0.00 0.00 1.28
688 689 3.456277 GAGGGAGGTGAACAGTGGAATAT 59.544 47.826 0.00 0.00 0.00 1.28
689 690 2.838202 GAGGGAGGTGAACAGTGGAATA 59.162 50.000 0.00 0.00 0.00 1.75
690 691 1.630878 GAGGGAGGTGAACAGTGGAAT 59.369 52.381 0.00 0.00 0.00 3.01
691 692 1.056660 GAGGGAGGTGAACAGTGGAA 58.943 55.000 0.00 0.00 0.00 3.53
692 693 0.105194 TGAGGGAGGTGAACAGTGGA 60.105 55.000 0.00 0.00 0.00 4.02
693 694 0.764890 TTGAGGGAGGTGAACAGTGG 59.235 55.000 0.00 0.00 0.00 4.00
694 695 2.616510 GGATTGAGGGAGGTGAACAGTG 60.617 54.545 0.00 0.00 0.00 3.66
695 696 1.630878 GGATTGAGGGAGGTGAACAGT 59.369 52.381 0.00 0.00 0.00 3.55
696 697 1.630369 TGGATTGAGGGAGGTGAACAG 59.370 52.381 0.00 0.00 0.00 3.16
697 698 1.741028 TGGATTGAGGGAGGTGAACA 58.259 50.000 0.00 0.00 0.00 3.18
698 699 3.054065 AGAATGGATTGAGGGAGGTGAAC 60.054 47.826 0.00 0.00 0.00 3.18
699 700 3.192944 AGAATGGATTGAGGGAGGTGAA 58.807 45.455 0.00 0.00 0.00 3.18
700 701 2.774234 GAGAATGGATTGAGGGAGGTGA 59.226 50.000 0.00 0.00 0.00 4.02
701 702 2.776536 AGAGAATGGATTGAGGGAGGTG 59.223 50.000 0.00 0.00 0.00 4.00
702 703 3.142579 AGAGAATGGATTGAGGGAGGT 57.857 47.619 0.00 0.00 0.00 3.85
703 704 4.080129 TGAAAGAGAATGGATTGAGGGAGG 60.080 45.833 0.00 0.00 0.00 4.30
704 705 5.108187 TGAAAGAGAATGGATTGAGGGAG 57.892 43.478 0.00 0.00 0.00 4.30
705 706 4.080129 CCTGAAAGAGAATGGATTGAGGGA 60.080 45.833 0.00 0.00 34.07 4.20
706 707 4.205587 CCTGAAAGAGAATGGATTGAGGG 58.794 47.826 0.00 0.00 34.07 4.30
707 708 4.205587 CCCTGAAAGAGAATGGATTGAGG 58.794 47.826 0.00 0.00 34.07 3.86
708 709 4.853007 ACCCTGAAAGAGAATGGATTGAG 58.147 43.478 0.00 0.00 34.07 3.02
709 710 4.934797 ACCCTGAAAGAGAATGGATTGA 57.065 40.909 0.00 0.00 34.07 2.57
710 711 5.012239 TGAACCCTGAAAGAGAATGGATTG 58.988 41.667 0.00 0.00 34.07 2.67
711 712 5.014544 TCTGAACCCTGAAAGAGAATGGATT 59.985 40.000 0.00 0.00 34.07 3.01
712 713 4.537688 TCTGAACCCTGAAAGAGAATGGAT 59.462 41.667 0.00 0.00 34.07 3.41
713 714 3.909995 TCTGAACCCTGAAAGAGAATGGA 59.090 43.478 0.00 0.00 34.07 3.41
714 715 4.292186 TCTGAACCCTGAAAGAGAATGG 57.708 45.455 0.00 0.00 34.07 3.16
715 716 4.880696 GGATCTGAACCCTGAAAGAGAATG 59.119 45.833 0.00 0.00 34.07 2.67
716 717 4.537688 TGGATCTGAACCCTGAAAGAGAAT 59.462 41.667 1.16 0.00 34.07 2.40
717 718 3.909995 TGGATCTGAACCCTGAAAGAGAA 59.090 43.478 1.16 0.00 34.07 2.87
718 719 3.261897 GTGGATCTGAACCCTGAAAGAGA 59.738 47.826 1.16 0.00 34.07 3.10
719 720 3.604582 GTGGATCTGAACCCTGAAAGAG 58.395 50.000 1.16 0.00 34.07 2.85
720 721 2.028112 CGTGGATCTGAACCCTGAAAGA 60.028 50.000 1.16 0.00 34.07 2.52
721 722 2.028112 TCGTGGATCTGAACCCTGAAAG 60.028 50.000 1.16 0.00 0.00 2.62
722 723 1.974957 TCGTGGATCTGAACCCTGAAA 59.025 47.619 1.16 0.00 0.00 2.69
723 724 1.275291 GTCGTGGATCTGAACCCTGAA 59.725 52.381 1.16 0.00 0.00 3.02
724 725 0.895530 GTCGTGGATCTGAACCCTGA 59.104 55.000 1.16 0.00 0.00 3.86
725 726 0.458543 CGTCGTGGATCTGAACCCTG 60.459 60.000 1.16 0.00 0.00 4.45
726 727 1.890894 CGTCGTGGATCTGAACCCT 59.109 57.895 1.16 0.00 0.00 4.34
727 728 1.810030 GCGTCGTGGATCTGAACCC 60.810 63.158 1.16 0.00 0.00 4.11
728 729 2.158959 CGCGTCGTGGATCTGAACC 61.159 63.158 0.00 0.00 0.00 3.62
729 730 2.158959 CCGCGTCGTGGATCTGAAC 61.159 63.158 20.30 0.00 34.74 3.18
759 760 1.800586 CTGACGGTGAACAGTGGATTG 59.199 52.381 0.00 0.00 0.00 2.67
796 824 1.808945 GAATGTGGTGCAACTCAGAGG 59.191 52.381 12.62 0.00 36.74 3.69
862 1236 6.888088 TGGTTAGTAGACTGAACATGTAGCTA 59.112 38.462 0.00 0.00 0.00 3.32
918 1296 6.283694 TGCACTGATAGTAAATAGGAAGCTG 58.716 40.000 0.00 0.00 0.00 4.24
923 1301 6.931281 GCTGAATGCACTGATAGTAAATAGGA 59.069 38.462 0.00 0.00 42.31 2.94
1053 1438 0.946221 CGAGCAGAACGGTCAGCTTT 60.946 55.000 22.05 0.00 45.80 3.51
1158 1543 3.025322 TCCTCCTCCTCTGACATCTTC 57.975 52.381 0.00 0.00 0.00 2.87
1189 1577 7.775093 CACCTCATTCATCCAAACTTTATCCTA 59.225 37.037 0.00 0.00 0.00 2.94
1305 1693 8.712228 ACTTCCCTAGTGAATTTTTGATCTTT 57.288 30.769 0.00 0.00 35.19 2.52
1754 2151 1.412710 CTTCGGTGCCAGGATAGCTTA 59.587 52.381 0.00 0.00 0.00 3.09
1843 2240 5.560724 AGCACAATGAGTAGGTAAACACAT 58.439 37.500 0.00 0.00 32.90 3.21
1852 2249 6.932356 ATACATCAAAGCACAATGAGTAGG 57.068 37.500 0.00 0.00 0.00 3.18
1942 2339 1.041726 CACGCACGCACATAAACAAC 58.958 50.000 0.00 0.00 0.00 3.32
2101 2498 6.369065 GGGTTGAGGAATATAAGCTATTCACG 59.631 42.308 9.37 0.00 36.06 4.35
2120 2517 3.819902 GGTACATTGTTTTACCGGGTTGA 59.180 43.478 4.31 0.00 0.00 3.18
2123 2520 3.505480 TGGTACATTGTTTTACCGGGT 57.495 42.857 6.32 4.46 40.75 5.28
2125 2522 5.774630 ACAATTGGTACATTGTTTTACCGG 58.225 37.500 10.83 0.00 40.75 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.