Multiple sequence alignment - TraesCS6D01G399300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G399300 chr6D 100.000 2732 0 0 1 2732 469934477 469931746 0.000000e+00 5046.0
1 TraesCS6D01G399300 chrUn 92.823 1254 63 15 1489 2732 247574100 247572864 0.000000e+00 1792.0
2 TraesCS6D01G399300 chrUn 91.839 919 40 10 613 1496 75398666 75399584 0.000000e+00 1249.0
3 TraesCS6D01G399300 chrUn 91.773 863 45 14 1880 2732 252718449 252719295 0.000000e+00 1177.0
4 TraesCS6D01G399300 chrUn 91.860 860 44 14 1883 2732 303071419 303070576 0.000000e+00 1177.0
5 TraesCS6D01G399300 chrUn 78.331 683 130 12 1073 1741 62146726 62147404 2.510000e-115 425.0
6 TraesCS6D01G399300 chrUn 94.545 275 14 1 1489 1763 468925354 468925627 9.040000e-115 424.0
7 TraesCS6D01G399300 chrUn 77.778 702 138 12 1054 1741 342198599 342197902 1.510000e-112 416.0
8 TraesCS6D01G399300 chrUn 73.935 798 182 19 1027 1804 271936618 271937409 5.720000e-77 298.0
9 TraesCS6D01G399300 chrUn 73.881 804 184 19 1027 1810 316618125 316617328 5.720000e-77 298.0
10 TraesCS6D01G399300 chrUn 91.262 103 3 2 512 614 79676500 79676596 4.750000e-28 135.0
11 TraesCS6D01G399300 chrUn 96.154 52 0 1 68 117 75397885 75397936 1.740000e-12 84.2
12 TraesCS6D01G399300 chr6A 77.045 880 172 19 999 1855 614795162 614794290 1.900000e-131 479.0
13 TraesCS6D01G399300 chr6A 89.720 107 5 2 512 618 484401 484501 6.140000e-27 132.0
14 TraesCS6D01G399300 chr6B 76.825 863 185 10 999 1848 715771830 715770970 3.180000e-129 472.0
15 TraesCS6D01G399300 chr6B 77.368 813 165 13 943 1741 717627914 717627107 5.330000e-127 464.0
16 TraesCS6D01G399300 chr6B 77.165 762 152 13 999 1741 715861967 715861209 9.040000e-115 424.0
17 TraesCS6D01G399300 chr4B 89.744 117 3 5 506 619 660698534 660698644 1.020000e-29 141.0
18 TraesCS6D01G399300 chr7A 90.291 103 4 3 512 614 128147641 128147545 2.210000e-26 130.0
19 TraesCS6D01G399300 chr3B 90.291 103 4 2 512 614 748785916 748785820 2.210000e-26 130.0
20 TraesCS6D01G399300 chr3B 90.291 103 4 2 512 614 773734332 773734428 2.210000e-26 130.0
21 TraesCS6D01G399300 chr3B 89.524 105 5 5 512 616 726477837 726477935 7.940000e-26 128.0
22 TraesCS6D01G399300 chr3A 87.611 113 7 4 511 623 62854198 62854093 1.030000e-24 124.0
23 TraesCS6D01G399300 chr5B 86.957 115 8 6 505 618 427028589 427028697 3.690000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G399300 chr6D 469931746 469934477 2731 True 5046.0 5046 100.0000 1 2732 1 chr6D.!!$R1 2731
1 TraesCS6D01G399300 chrUn 247572864 247574100 1236 True 1792.0 1792 92.8230 1489 2732 1 chrUn.!!$R1 1243
2 TraesCS6D01G399300 chrUn 252718449 252719295 846 False 1177.0 1177 91.7730 1880 2732 1 chrUn.!!$F3 852
3 TraesCS6D01G399300 chrUn 303070576 303071419 843 True 1177.0 1177 91.8600 1883 2732 1 chrUn.!!$R2 849
4 TraesCS6D01G399300 chrUn 75397885 75399584 1699 False 666.6 1249 93.9965 68 1496 2 chrUn.!!$F6 1428
5 TraesCS6D01G399300 chrUn 62146726 62147404 678 False 425.0 425 78.3310 1073 1741 1 chrUn.!!$F1 668
6 TraesCS6D01G399300 chrUn 342197902 342198599 697 True 416.0 416 77.7780 1054 1741 1 chrUn.!!$R4 687
7 TraesCS6D01G399300 chrUn 271936618 271937409 791 False 298.0 298 73.9350 1027 1804 1 chrUn.!!$F4 777
8 TraesCS6D01G399300 chrUn 316617328 316618125 797 True 298.0 298 73.8810 1027 1810 1 chrUn.!!$R3 783
9 TraesCS6D01G399300 chr6A 614794290 614795162 872 True 479.0 479 77.0450 999 1855 1 chr6A.!!$R1 856
10 TraesCS6D01G399300 chr6B 715770970 715771830 860 True 472.0 472 76.8250 999 1848 1 chr6B.!!$R1 849
11 TraesCS6D01G399300 chr6B 717627107 717627914 807 True 464.0 464 77.3680 943 1741 1 chr6B.!!$R3 798
12 TraesCS6D01G399300 chr6B 715861209 715861967 758 True 424.0 424 77.1650 999 1741 1 chr6B.!!$R2 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.037697 TTGCTACCGACGCAATCACT 60.038 50.0 2.57 0.0 41.97 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 2683 1.103803 GACACGATCACTGGCTAGGA 58.896 55.0 0.85 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.884458 GCCAAAGCTAACTCACCTAATC 57.116 45.455 0.00 0.00 35.50 1.75
31 32 4.518249 GCCAAAGCTAACTCACCTAATCT 58.482 43.478 0.00 0.00 35.50 2.40
32 33 5.671493 GCCAAAGCTAACTCACCTAATCTA 58.329 41.667 0.00 0.00 35.50 1.98
33 34 6.292150 GCCAAAGCTAACTCACCTAATCTAT 58.708 40.000 0.00 0.00 35.50 1.98
34 35 6.768381 GCCAAAGCTAACTCACCTAATCTATT 59.232 38.462 0.00 0.00 35.50 1.73
35 36 7.254932 GCCAAAGCTAACTCACCTAATCTATTG 60.255 40.741 0.00 0.00 35.50 1.90
36 37 7.770897 CCAAAGCTAACTCACCTAATCTATTGT 59.229 37.037 0.00 0.00 0.00 2.71
37 38 8.821894 CAAAGCTAACTCACCTAATCTATTGTC 58.178 37.037 0.00 0.00 0.00 3.18
38 39 6.740110 AGCTAACTCACCTAATCTATTGTCG 58.260 40.000 0.00 0.00 0.00 4.35
39 40 5.402867 GCTAACTCACCTAATCTATTGTCGC 59.597 44.000 0.00 0.00 0.00 5.19
40 41 5.599999 AACTCACCTAATCTATTGTCGCT 57.400 39.130 0.00 0.00 0.00 4.93
41 42 4.938080 ACTCACCTAATCTATTGTCGCTG 58.062 43.478 0.00 0.00 0.00 5.18
42 43 4.402793 ACTCACCTAATCTATTGTCGCTGT 59.597 41.667 0.00 0.00 0.00 4.40
43 44 4.933330 TCACCTAATCTATTGTCGCTGTC 58.067 43.478 0.00 0.00 0.00 3.51
44 45 3.731216 CACCTAATCTATTGTCGCTGTCG 59.269 47.826 0.00 0.00 0.00 4.35
45 46 2.726760 CCTAATCTATTGTCGCTGTCGC 59.273 50.000 0.00 0.00 35.26 5.19
46 47 1.571919 AATCTATTGTCGCTGTCGCC 58.428 50.000 0.00 0.00 35.26 5.54
47 48 0.459899 ATCTATTGTCGCTGTCGCCA 59.540 50.000 0.00 0.00 35.26 5.69
48 49 0.459899 TCTATTGTCGCTGTCGCCAT 59.540 50.000 0.00 0.00 35.26 4.40
49 50 1.679153 TCTATTGTCGCTGTCGCCATA 59.321 47.619 0.00 0.00 35.26 2.74
50 51 2.296190 TCTATTGTCGCTGTCGCCATAT 59.704 45.455 0.00 0.00 35.26 1.78
51 52 1.953559 ATTGTCGCTGTCGCCATATT 58.046 45.000 0.00 0.00 35.26 1.28
52 53 1.286501 TTGTCGCTGTCGCCATATTC 58.713 50.000 0.00 0.00 35.26 1.75
53 54 0.174617 TGTCGCTGTCGCCATATTCA 59.825 50.000 0.00 0.00 35.26 2.57
54 55 0.855349 GTCGCTGTCGCCATATTCAG 59.145 55.000 0.00 0.00 35.26 3.02
55 56 0.249447 TCGCTGTCGCCATATTCAGG 60.249 55.000 0.00 0.00 35.26 3.86
65 66 2.146342 CCATATTCAGGCATGTCGACC 58.854 52.381 14.12 0.00 0.00 4.79
66 67 2.485302 CCATATTCAGGCATGTCGACCA 60.485 50.000 14.12 1.26 0.00 4.02
108 109 5.186797 AGTGGGAGACTTCTAATCACAAGAG 59.813 44.000 0.00 0.00 0.00 2.85
109 110 4.081420 TGGGAGACTTCTAATCACAAGAGC 60.081 45.833 0.00 0.00 0.00 4.09
110 111 4.109050 GGAGACTTCTAATCACAAGAGCG 58.891 47.826 0.00 0.00 0.00 5.03
111 112 3.516615 AGACTTCTAATCACAAGAGCGC 58.483 45.455 0.00 0.00 0.00 5.92
112 113 2.263077 ACTTCTAATCACAAGAGCGCG 58.737 47.619 0.00 0.00 0.00 6.86
113 114 0.999406 TTCTAATCACAAGAGCGCGC 59.001 50.000 26.66 26.66 0.00 6.86
114 115 0.806102 TCTAATCACAAGAGCGCGCC 60.806 55.000 30.33 19.60 0.00 6.53
115 116 1.079474 TAATCACAAGAGCGCGCCA 60.079 52.632 30.33 3.05 0.00 5.69
116 117 1.358725 TAATCACAAGAGCGCGCCAC 61.359 55.000 30.33 22.32 0.00 5.01
124 125 3.733344 GAGCGCGCCACCAGGAATA 62.733 63.158 30.33 0.00 36.89 1.75
125 126 2.591715 GCGCGCCACCAGGAATAT 60.592 61.111 23.24 0.00 36.89 1.28
126 127 2.186826 GCGCGCCACCAGGAATATT 61.187 57.895 23.24 0.00 36.89 1.28
127 128 1.648720 CGCGCCACCAGGAATATTG 59.351 57.895 0.00 0.00 36.89 1.90
128 129 1.360192 GCGCCACCAGGAATATTGC 59.640 57.895 0.00 0.00 36.89 3.56
129 130 1.103398 GCGCCACCAGGAATATTGCT 61.103 55.000 3.24 3.24 36.89 3.91
130 131 1.813862 GCGCCACCAGGAATATTGCTA 60.814 52.381 9.36 0.00 36.89 3.49
131 132 1.873591 CGCCACCAGGAATATTGCTAC 59.126 52.381 9.36 0.00 36.89 3.58
132 133 2.230660 GCCACCAGGAATATTGCTACC 58.769 52.381 9.36 0.00 36.89 3.18
133 134 2.494059 CCACCAGGAATATTGCTACCG 58.506 52.381 9.36 3.13 36.89 4.02
134 135 2.104111 CCACCAGGAATATTGCTACCGA 59.896 50.000 9.36 0.00 36.89 4.69
135 136 3.131396 CACCAGGAATATTGCTACCGAC 58.869 50.000 9.36 0.00 0.00 4.79
136 137 2.223971 ACCAGGAATATTGCTACCGACG 60.224 50.000 9.36 0.00 0.00 5.12
137 138 1.792949 CAGGAATATTGCTACCGACGC 59.207 52.381 9.36 0.00 0.00 5.19
138 139 1.411246 AGGAATATTGCTACCGACGCA 59.589 47.619 7.83 0.00 35.22 5.24
142 143 4.999212 TTGCTACCGACGCAATCA 57.001 50.000 2.57 0.00 41.97 2.57
143 144 2.451693 TTGCTACCGACGCAATCAC 58.548 52.632 2.57 0.00 41.97 3.06
144 145 0.037697 TTGCTACCGACGCAATCACT 60.038 50.000 2.57 0.00 41.97 3.41
155 156 2.853159 CAATCACTGCTACCGCCAA 58.147 52.632 0.00 0.00 34.43 4.52
159 160 0.541392 TCACTGCTACCGCCAATGAT 59.459 50.000 0.00 0.00 34.43 2.45
161 162 1.097547 ACTGCTACCGCCAATGATGC 61.098 55.000 0.00 0.00 34.43 3.91
162 163 1.789078 CTGCTACCGCCAATGATGCC 61.789 60.000 0.00 0.00 34.43 4.40
164 165 2.024918 CTACCGCCAATGATGCCAC 58.975 57.895 0.00 0.00 0.00 5.01
165 166 1.775039 CTACCGCCAATGATGCCACG 61.775 60.000 0.00 0.00 0.00 4.94
166 167 2.245438 TACCGCCAATGATGCCACGA 62.245 55.000 0.00 0.00 0.00 4.35
167 168 2.404789 CGCCAATGATGCCACGAC 59.595 61.111 0.00 0.00 0.00 4.34
168 169 2.800736 GCCAATGATGCCACGACC 59.199 61.111 0.00 0.00 0.00 4.79
169 170 2.045708 GCCAATGATGCCACGACCA 61.046 57.895 0.00 0.00 0.00 4.02
170 171 1.996786 GCCAATGATGCCACGACCAG 61.997 60.000 0.00 0.00 0.00 4.00
171 172 0.677731 CCAATGATGCCACGACCAGT 60.678 55.000 0.00 0.00 0.00 4.00
172 173 0.729116 CAATGATGCCACGACCAGTC 59.271 55.000 0.00 0.00 0.00 3.51
190 191 3.869272 GCCTCGCGGTCATTGCAG 61.869 66.667 6.13 0.00 0.00 4.41
191 192 3.869272 CCTCGCGGTCATTGCAGC 61.869 66.667 6.13 0.00 0.00 5.25
192 193 3.869272 CTCGCGGTCATTGCAGCC 61.869 66.667 6.13 0.00 0.00 4.85
193 194 4.695993 TCGCGGTCATTGCAGCCA 62.696 61.111 6.13 0.00 0.00 4.75
194 195 3.511595 CGCGGTCATTGCAGCCAT 61.512 61.111 0.00 0.00 0.00 4.40
195 196 2.887360 GCGGTCATTGCAGCCATT 59.113 55.556 0.00 0.00 0.00 3.16
196 197 1.517694 GCGGTCATTGCAGCCATTG 60.518 57.895 0.00 0.00 0.00 2.82
228 229 3.537874 CCGAGATGTCCCGGGGTC 61.538 72.222 23.50 16.56 41.89 4.46
229 230 3.900892 CGAGATGTCCCGGGGTCG 61.901 72.222 23.50 17.06 0.00 4.79
230 231 4.222847 GAGATGTCCCGGGGTCGC 62.223 72.222 23.50 14.53 34.56 5.19
231 232 4.779733 AGATGTCCCGGGGTCGCT 62.780 66.667 23.50 10.91 34.56 4.93
232 233 4.530857 GATGTCCCGGGGTCGCTG 62.531 72.222 23.50 0.00 34.56 5.18
242 243 4.459089 GGTCGCTGCCCCAGTCTC 62.459 72.222 0.00 0.00 33.43 3.36
243 244 3.386237 GTCGCTGCCCCAGTCTCT 61.386 66.667 0.00 0.00 33.43 3.10
244 245 2.052690 GTCGCTGCCCCAGTCTCTA 61.053 63.158 0.00 0.00 33.43 2.43
245 246 1.304962 TCGCTGCCCCAGTCTCTAA 60.305 57.895 0.00 0.00 33.43 2.10
246 247 1.153549 CGCTGCCCCAGTCTCTAAC 60.154 63.158 0.00 0.00 33.43 2.34
247 248 1.888436 CGCTGCCCCAGTCTCTAACA 61.888 60.000 0.00 0.00 33.43 2.41
248 249 0.543749 GCTGCCCCAGTCTCTAACAT 59.456 55.000 0.00 0.00 33.43 2.71
249 250 1.474143 GCTGCCCCAGTCTCTAACATC 60.474 57.143 0.00 0.00 33.43 3.06
250 251 1.139853 CTGCCCCAGTCTCTAACATCC 59.860 57.143 0.00 0.00 0.00 3.51
251 252 0.105039 GCCCCAGTCTCTAACATCCG 59.895 60.000 0.00 0.00 0.00 4.18
252 253 0.105039 CCCCAGTCTCTAACATCCGC 59.895 60.000 0.00 0.00 0.00 5.54
253 254 1.115467 CCCAGTCTCTAACATCCGCT 58.885 55.000 0.00 0.00 0.00 5.52
254 255 1.202463 CCCAGTCTCTAACATCCGCTG 60.202 57.143 0.00 0.00 0.00 5.18
255 256 1.751351 CCAGTCTCTAACATCCGCTGA 59.249 52.381 0.00 0.00 0.00 4.26
256 257 2.480416 CCAGTCTCTAACATCCGCTGAC 60.480 54.545 0.00 0.00 0.00 3.51
257 258 1.402259 AGTCTCTAACATCCGCTGACG 59.598 52.381 0.00 0.00 39.67 4.35
258 259 1.132643 GTCTCTAACATCCGCTGACGT 59.867 52.381 0.00 0.00 37.70 4.34
259 260 1.132453 TCTCTAACATCCGCTGACGTG 59.868 52.381 0.00 0.00 37.70 4.49
260 261 0.457853 TCTAACATCCGCTGACGTGC 60.458 55.000 0.00 0.00 37.70 5.34
261 262 0.735978 CTAACATCCGCTGACGTGCA 60.736 55.000 0.00 0.00 37.70 4.57
262 263 1.011968 TAACATCCGCTGACGTGCAC 61.012 55.000 6.82 6.82 37.70 4.57
263 264 3.842126 CATCCGCTGACGTGCACG 61.842 66.667 35.99 35.99 46.33 5.34
268 269 4.152625 GCTGACGTGCACGCCATC 62.153 66.667 37.35 25.46 44.43 3.51
269 270 3.490759 CTGACGTGCACGCCATCC 61.491 66.667 37.35 21.12 44.43 3.51
270 271 4.306967 TGACGTGCACGCCATCCA 62.307 61.111 37.35 23.25 44.43 3.41
271 272 3.047280 GACGTGCACGCCATCCAA 61.047 61.111 37.35 0.00 44.43 3.53
272 273 3.027170 GACGTGCACGCCATCCAAG 62.027 63.158 37.35 10.10 44.43 3.61
273 274 3.803082 CGTGCACGCCATCCAAGG 61.803 66.667 28.16 0.00 0.00 3.61
294 295 2.514592 CCGCAACGATCCTGCCAT 60.515 61.111 8.46 0.00 36.40 4.40
298 299 2.020131 CAACGATCCTGCCATGAGC 58.980 57.895 0.00 0.00 44.14 4.26
307 308 1.078497 TGCCATGAGCCTACAACCG 60.078 57.895 0.00 0.00 42.71 4.44
308 309 1.078426 GCCATGAGCCTACAACCGT 60.078 57.895 0.00 0.00 34.35 4.83
310 311 0.806102 CCATGAGCCTACAACCGTCG 60.806 60.000 0.00 0.00 0.00 5.12
312 313 0.172803 ATGAGCCTACAACCGTCGTC 59.827 55.000 0.00 0.00 0.00 4.20
314 315 1.593296 GAGCCTACAACCGTCGTCCT 61.593 60.000 0.00 0.00 0.00 3.85
315 316 1.445582 GCCTACAACCGTCGTCCTG 60.446 63.158 0.00 0.00 0.00 3.86
344 499 1.360393 TTTGCCACCCACTTCCTCCT 61.360 55.000 0.00 0.00 0.00 3.69
345 500 1.779061 TTGCCACCCACTTCCTCCTC 61.779 60.000 0.00 0.00 0.00 3.71
347 502 1.904990 GCCACCCACTTCCTCCTCTC 61.905 65.000 0.00 0.00 0.00 3.20
348 503 0.545309 CCACCCACTTCCTCCTCTCA 60.545 60.000 0.00 0.00 0.00 3.27
349 504 1.577736 CACCCACTTCCTCCTCTCAT 58.422 55.000 0.00 0.00 0.00 2.90
351 506 0.179936 CCCACTTCCTCCTCTCATGC 59.820 60.000 0.00 0.00 0.00 4.06
352 507 0.179936 CCACTTCCTCCTCTCATGCC 59.820 60.000 0.00 0.00 0.00 4.40
353 508 0.179936 CACTTCCTCCTCTCATGCCC 59.820 60.000 0.00 0.00 0.00 5.36
354 509 0.043940 ACTTCCTCCTCTCATGCCCT 59.956 55.000 0.00 0.00 0.00 5.19
356 511 0.692419 TTCCTCCTCTCATGCCCTCC 60.692 60.000 0.00 0.00 0.00 4.30
357 512 2.146061 CCTCCTCTCATGCCCTCCC 61.146 68.421 0.00 0.00 0.00 4.30
358 513 2.040464 TCCTCTCATGCCCTCCCC 60.040 66.667 0.00 0.00 0.00 4.81
359 514 2.367377 CCTCTCATGCCCTCCCCA 60.367 66.667 0.00 0.00 0.00 4.96
360 515 1.773391 CCTCTCATGCCCTCCCCAT 60.773 63.158 0.00 0.00 0.00 4.00
361 516 1.358830 CCTCTCATGCCCTCCCCATT 61.359 60.000 0.00 0.00 0.00 3.16
362 517 1.438469 CTCTCATGCCCTCCCCATTA 58.562 55.000 0.00 0.00 0.00 1.90
364 519 1.143813 CTCATGCCCTCCCCATTAGT 58.856 55.000 0.00 0.00 0.00 2.24
365 520 2.090210 TCTCATGCCCTCCCCATTAGTA 60.090 50.000 0.00 0.00 0.00 1.82
366 521 2.039084 CTCATGCCCTCCCCATTAGTAC 59.961 54.545 0.00 0.00 0.00 2.73
367 522 2.057922 CATGCCCTCCCCATTAGTACT 58.942 52.381 0.00 0.00 0.00 2.73
368 523 3.116512 TCATGCCCTCCCCATTAGTACTA 60.117 47.826 0.00 0.00 0.00 1.82
370 525 3.738434 TGCCCTCCCCATTAGTACTAAA 58.262 45.455 18.88 1.86 0.00 1.85
371 526 4.312487 TGCCCTCCCCATTAGTACTAAAT 58.688 43.478 18.88 5.72 0.00 1.40
376 839 7.447545 GCCCTCCCCATTAGTACTAAATAAAAG 59.552 40.741 18.88 13.05 0.00 2.27
397 860 7.846101 AAAGAAGAGGGAAAATTCAACATCT 57.154 32.000 0.00 0.00 0.00 2.90
398 861 7.846101 AAGAAGAGGGAAAATTCAACATCTT 57.154 32.000 3.74 3.74 0.00 2.40
399 862 7.459795 AGAAGAGGGAAAATTCAACATCTTC 57.540 36.000 16.33 16.33 40.95 2.87
400 863 7.237255 AGAAGAGGGAAAATTCAACATCTTCT 58.763 34.615 18.96 18.96 44.13 2.85
406 908 6.392354 GGAAAATTCAACATCTTCTGCATGA 58.608 36.000 0.00 0.00 0.00 3.07
408 910 7.148689 GGAAAATTCAACATCTTCTGCATGAAC 60.149 37.037 0.00 0.00 37.04 3.18
469 971 6.928492 GGTTCTGATCTGATCTGAAAGTATCC 59.072 42.308 29.60 23.86 44.95 2.59
487 989 0.578683 CCATAGTTGATGACAGCGCG 59.421 55.000 0.00 0.00 37.82 6.86
489 991 1.482621 ATAGTTGATGACAGCGCGCG 61.483 55.000 28.44 28.44 32.59 6.86
511 1013 4.939439 CGCAGGTTGGGTTAGTTAAGTATT 59.061 41.667 0.00 0.00 0.00 1.89
512 1014 6.108015 CGCAGGTTGGGTTAGTTAAGTATTA 58.892 40.000 0.00 0.00 0.00 0.98
513 1015 6.036408 CGCAGGTTGGGTTAGTTAAGTATTAC 59.964 42.308 0.00 0.00 0.00 1.89
514 1016 7.108194 GCAGGTTGGGTTAGTTAAGTATTACT 58.892 38.462 0.00 0.00 0.00 2.24
515 1017 7.279536 GCAGGTTGGGTTAGTTAAGTATTACTC 59.720 40.741 0.00 0.00 0.00 2.59
516 1018 7.767659 CAGGTTGGGTTAGTTAAGTATTACTCC 59.232 40.741 0.00 0.00 0.00 3.85
517 1019 7.050377 GGTTGGGTTAGTTAAGTATTACTCCC 58.950 42.308 7.32 7.32 0.00 4.30
518 1020 7.092712 GGTTGGGTTAGTTAAGTATTACTCCCT 60.093 40.741 13.01 5.89 33.15 4.20
519 1021 7.666063 TGGGTTAGTTAAGTATTACTCCCTC 57.334 40.000 13.01 0.49 33.15 4.30
520 1022 6.612863 TGGGTTAGTTAAGTATTACTCCCTCC 59.387 42.308 13.01 4.48 33.15 4.30
521 1023 6.239148 GGGTTAGTTAAGTATTACTCCCTCCG 60.239 46.154 0.00 0.00 0.00 4.63
522 1024 6.322456 GGTTAGTTAAGTATTACTCCCTCCGT 59.678 42.308 0.00 0.00 0.00 4.69
523 1025 7.147828 GGTTAGTTAAGTATTACTCCCTCCGTT 60.148 40.741 0.00 0.00 0.00 4.44
524 1026 6.462552 AGTTAAGTATTACTCCCTCCGTTC 57.537 41.667 0.00 0.00 0.00 3.95
525 1027 6.193504 AGTTAAGTATTACTCCCTCCGTTCT 58.806 40.000 0.00 0.00 0.00 3.01
526 1028 7.349598 AGTTAAGTATTACTCCCTCCGTTCTA 58.650 38.462 0.00 0.00 0.00 2.10
527 1029 7.836183 AGTTAAGTATTACTCCCTCCGTTCTAA 59.164 37.037 0.00 0.00 0.00 2.10
528 1030 8.470002 GTTAAGTATTACTCCCTCCGTTCTAAA 58.530 37.037 0.00 0.00 0.00 1.85
529 1031 7.486407 AAGTATTACTCCCTCCGTTCTAAAA 57.514 36.000 0.00 0.00 0.00 1.52
530 1032 7.672122 AGTATTACTCCCTCCGTTCTAAAAT 57.328 36.000 0.00 0.00 0.00 1.82
531 1033 8.773033 AGTATTACTCCCTCCGTTCTAAAATA 57.227 34.615 0.00 0.00 0.00 1.40
532 1034 8.858094 AGTATTACTCCCTCCGTTCTAAAATAG 58.142 37.037 0.00 0.00 0.00 1.73
533 1035 7.909485 ATTACTCCCTCCGTTCTAAAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
534 1036 7.909485 TTACTCCCTCCGTTCTAAAATAGAT 57.091 36.000 0.00 0.00 34.22 1.98
535 1037 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
536 1038 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
537 1039 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
538 1040 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
539 1041 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
540 1042 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
541 1043 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
542 1044 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
543 1045 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
544 1046 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
545 1047 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
546 1048 9.158233 CGTTCTAAAATAGATGACCCAACTTTA 57.842 33.333 0.00 0.00 34.22 1.85
549 1051 9.120538 TCTAAAATAGATGACCCAACTTTATGC 57.879 33.333 0.00 0.00 0.00 3.14
550 1052 7.961326 AAAATAGATGACCCAACTTTATGCT 57.039 32.000 0.00 0.00 0.00 3.79
552 1054 9.474313 AAAATAGATGACCCAACTTTATGCTAA 57.526 29.630 0.00 0.00 0.00 3.09
553 1055 8.451908 AATAGATGACCCAACTTTATGCTAAC 57.548 34.615 0.00 0.00 0.00 2.34
554 1056 6.067217 AGATGACCCAACTTTATGCTAACT 57.933 37.500 0.00 0.00 0.00 2.24
555 1057 6.485171 AGATGACCCAACTTTATGCTAACTT 58.515 36.000 0.00 0.00 0.00 2.66
556 1058 6.948309 AGATGACCCAACTTTATGCTAACTTT 59.052 34.615 0.00 0.00 0.00 2.66
557 1059 6.325919 TGACCCAACTTTATGCTAACTTTG 57.674 37.500 0.00 0.00 0.00 2.77
558 1060 5.830991 TGACCCAACTTTATGCTAACTTTGT 59.169 36.000 0.00 0.00 0.00 2.83
559 1061 6.999272 TGACCCAACTTTATGCTAACTTTGTA 59.001 34.615 0.00 0.00 0.00 2.41
560 1062 7.040961 TGACCCAACTTTATGCTAACTTTGTAC 60.041 37.037 0.00 0.00 0.00 2.90
561 1063 7.002276 ACCCAACTTTATGCTAACTTTGTACT 58.998 34.615 0.00 0.00 0.00 2.73
562 1064 8.158789 ACCCAACTTTATGCTAACTTTGTACTA 58.841 33.333 0.00 0.00 0.00 1.82
563 1065 9.005777 CCCAACTTTATGCTAACTTTGTACTAA 57.994 33.333 0.00 0.00 0.00 2.24
585 1087 9.783256 ACTAAAGTTAAAGTTAGCACAAAGTTG 57.217 29.630 6.40 0.00 31.67 3.16
586 1088 9.233232 CTAAAGTTAAAGTTAGCACAAAGTTGG 57.767 33.333 0.00 0.00 0.00 3.77
587 1089 6.144078 AGTTAAAGTTAGCACAAAGTTGGG 57.856 37.500 0.00 0.00 33.81 4.12
588 1090 5.655090 AGTTAAAGTTAGCACAAAGTTGGGT 59.345 36.000 0.00 0.00 33.05 4.51
589 1091 4.649088 AAAGTTAGCACAAAGTTGGGTC 57.351 40.909 0.00 0.00 33.05 4.46
590 1092 3.290948 AGTTAGCACAAAGTTGGGTCA 57.709 42.857 0.00 0.00 33.05 4.02
591 1093 3.832527 AGTTAGCACAAAGTTGGGTCAT 58.167 40.909 0.00 0.00 33.05 3.06
592 1094 4.215109 AGTTAGCACAAAGTTGGGTCATT 58.785 39.130 0.00 0.00 33.05 2.57
593 1095 4.649218 AGTTAGCACAAAGTTGGGTCATTT 59.351 37.500 0.00 0.00 33.05 2.32
594 1096 5.830991 AGTTAGCACAAAGTTGGGTCATTTA 59.169 36.000 0.00 0.00 33.05 1.40
595 1097 6.493458 AGTTAGCACAAAGTTGGGTCATTTAT 59.507 34.615 0.00 0.00 33.05 1.40
596 1098 5.806654 AGCACAAAGTTGGGTCATTTATT 57.193 34.783 0.00 0.00 33.05 1.40
597 1099 6.173427 AGCACAAAGTTGGGTCATTTATTT 57.827 33.333 0.00 0.00 33.05 1.40
598 1100 6.591001 AGCACAAAGTTGGGTCATTTATTTT 58.409 32.000 0.00 0.00 33.05 1.82
599 1101 6.482973 AGCACAAAGTTGGGTCATTTATTTTG 59.517 34.615 0.00 0.00 33.05 2.44
600 1102 6.481644 GCACAAAGTTGGGTCATTTATTTTGA 59.518 34.615 0.00 0.00 33.05 2.69
601 1103 7.011857 GCACAAAGTTGGGTCATTTATTTTGAA 59.988 33.333 0.00 0.00 33.05 2.69
602 1104 8.887717 CACAAAGTTGGGTCATTTATTTTGAAA 58.112 29.630 0.00 0.00 0.00 2.69
603 1105 8.888716 ACAAAGTTGGGTCATTTATTTTGAAAC 58.111 29.630 0.00 0.00 0.00 2.78
604 1106 7.707774 AAGTTGGGTCATTTATTTTGAAACG 57.292 32.000 0.00 0.00 0.00 3.60
605 1107 6.220201 AGTTGGGTCATTTATTTTGAAACGG 58.780 36.000 0.00 0.00 0.00 4.44
606 1108 6.041069 AGTTGGGTCATTTATTTTGAAACGGA 59.959 34.615 0.00 0.00 0.00 4.69
607 1109 6.019779 TGGGTCATTTATTTTGAAACGGAG 57.980 37.500 0.00 0.00 0.00 4.63
608 1110 5.047660 TGGGTCATTTATTTTGAAACGGAGG 60.048 40.000 0.00 0.00 0.00 4.30
609 1111 5.407502 GGTCATTTATTTTGAAACGGAGGG 58.592 41.667 0.00 0.00 0.00 4.30
610 1112 5.184287 GGTCATTTATTTTGAAACGGAGGGA 59.816 40.000 0.00 0.00 0.00 4.20
611 1113 6.322491 GTCATTTATTTTGAAACGGAGGGAG 58.678 40.000 0.00 0.00 0.00 4.30
623 1125 1.067071 CGGAGGGAGTACAAAGGACAC 60.067 57.143 0.00 0.00 0.00 3.67
645 1147 2.616842 GACAACGTTCAAGTGGGAACAT 59.383 45.455 0.00 0.00 45.82 2.71
679 1181 5.178797 CAGGAAAATCTCGACCTAATGTGT 58.821 41.667 0.00 0.00 0.00 3.72
749 1251 8.785184 AACTGGCTAATCTCTACCTAACTAAT 57.215 34.615 0.00 0.00 0.00 1.73
848 1350 7.338449 GGGTTAGCATCTGAGGTTAATTAACAA 59.662 37.037 25.59 12.33 37.92 2.83
855 1357 8.834465 CATCTGAGGTTAATTAACAATCTCAGG 58.166 37.037 33.95 25.17 43.07 3.86
876 1413 7.376615 TCAGGTTAGTTAGAAAGCAAGTACTC 58.623 38.462 0.00 0.00 0.00 2.59
905 1442 0.813821 GAAGCAATTGTCCAGGGAGC 59.186 55.000 7.40 0.00 0.00 4.70
908 1445 1.926511 GCAATTGTCCAGGGAGCGTG 61.927 60.000 7.40 0.00 0.00 5.34
909 1446 1.675641 AATTGTCCAGGGAGCGTGC 60.676 57.895 0.00 0.00 0.00 5.34
1005 1542 3.563261 CCACACCCTATGAAACCATGGAA 60.563 47.826 21.47 0.73 0.00 3.53
1024 1561 4.838486 CGGCTCTCGCGAGTGTCC 62.838 72.222 33.33 29.56 39.53 4.02
1025 1562 3.444805 GGCTCTCGCGAGTGTCCT 61.445 66.667 33.33 0.00 39.53 3.85
1042 1579 3.628646 CTGACGGGGGCCCTGAAAG 62.629 68.421 37.99 27.19 33.36 2.62
1088 1625 0.753867 TTGGGTGACGAGTACAAGCA 59.246 50.000 0.00 0.00 0.00 3.91
1090 1627 1.337728 TGGGTGACGAGTACAAGCATG 60.338 52.381 0.00 0.00 0.00 4.06
1138 1675 8.772250 TCAAGTCCTTGAATAATGAACTATCCT 58.228 33.333 7.26 0.00 45.56 3.24
1258 1795 9.823647 ACATAGATGATTTCATAGACGACTTTT 57.176 29.630 0.00 0.00 36.57 2.27
1274 1811 9.722056 AGACGACTTTTTGAAATATATCAATGC 57.278 29.630 0.00 0.00 38.98 3.56
1289 1826 4.277515 TCAATGCTGAAGACACTAAGCT 57.722 40.909 0.00 0.00 36.60 3.74
1418 1964 4.681781 CGAGAGGAATGCAAGGTACAAGAT 60.682 45.833 0.00 0.00 0.00 2.40
1620 2175 0.745845 CTGGAGGAATGGGCAAGACG 60.746 60.000 0.00 0.00 0.00 4.18
1664 2219 7.068103 TGTGTCAAGAGCTAAAAGGAAAATTCA 59.932 33.333 0.00 0.00 0.00 2.57
1763 2318 4.851558 GGAATCAACGTTATGCTGAAACAC 59.148 41.667 0.00 0.00 0.00 3.32
1780 2335 0.877071 CACAAGAAGGAAGCGTGCAT 59.123 50.000 0.00 0.00 0.00 3.96
2000 2555 9.935241 TTTAGCAAGCAATTCCATAAATTTACA 57.065 25.926 0.00 0.00 35.32 2.41
2003 2558 7.712205 AGCAAGCAATTCCATAAATTTACATCC 59.288 33.333 0.00 0.00 35.32 3.51
2004 2559 7.495279 GCAAGCAATTCCATAAATTTACATCCA 59.505 33.333 0.00 0.00 35.32 3.41
2006 2561 9.956640 AAGCAATTCCATAAATTTACATCCAAA 57.043 25.926 0.00 0.00 35.32 3.28
2013 2568 9.956640 TCCATAAATTTACATCCAAATTTTGCT 57.043 25.926 10.72 0.00 42.59 3.91
2018 2573 8.851541 AATTTACATCCAAATTTTGCTCATGT 57.148 26.923 16.95 16.95 35.12 3.21
2019 2574 8.851541 ATTTACATCCAAATTTTGCTCATGTT 57.148 26.923 17.54 5.26 30.99 2.71
2020 2575 8.674263 TTTACATCCAAATTTTGCTCATGTTT 57.326 26.923 17.54 4.77 30.99 2.83
2062 2617 9.733556 ATGTCAAATGTTTGTAGTAATGTCCTA 57.266 29.630 5.48 0.00 39.18 2.94
2063 2618 9.733556 TGTCAAATGTTTGTAGTAATGTCCTAT 57.266 29.630 5.48 0.00 39.18 2.57
2080 2635 9.853177 AATGTCCTATTAGGTTTCCATAAGAAG 57.147 33.333 9.57 0.00 36.53 2.85
2082 2637 9.053472 TGTCCTATTAGGTTTCCATAAGAAGAA 57.947 33.333 9.57 0.00 36.53 2.52
2083 2638 9.549078 GTCCTATTAGGTTTCCATAAGAAGAAG 57.451 37.037 9.57 0.00 36.53 2.85
2084 2639 9.280456 TCCTATTAGGTTTCCATAAGAAGAAGT 57.720 33.333 9.57 0.00 36.53 3.01
2085 2640 9.331282 CCTATTAGGTTTCCATAAGAAGAAGTG 57.669 37.037 1.17 0.00 35.40 3.16
2134 2690 7.048512 ACAAGAATAAGTGTGTATTCCTAGCC 58.951 38.462 2.16 0.00 40.10 3.93
2147 2703 0.103208 CCTAGCCAGTGATCGTGTCC 59.897 60.000 0.00 0.00 0.00 4.02
2159 2715 3.594603 ATCGTGTCCCCGATCATATTC 57.405 47.619 0.00 0.00 43.74 1.75
2205 2761 3.269178 TGTATTGTTGAGATGCGATGCA 58.731 40.909 0.00 0.00 44.86 3.96
2225 2781 4.202567 TGCACCTTACCATTCTCTTTCCTT 60.203 41.667 0.00 0.00 0.00 3.36
2248 2804 8.295288 CCTTCATTTTGCATCCATATACTCTTC 58.705 37.037 0.00 0.00 0.00 2.87
2257 2813 6.317391 GCATCCATATACTCTTCTTTATGCCC 59.683 42.308 0.00 0.00 32.00 5.36
2297 2853 7.984422 TCTATCAAGAGCAACTTTGATGAAA 57.016 32.000 9.33 0.00 36.61 2.69
2308 2864 4.401022 ACTTTGATGAAACTCCTGATGCA 58.599 39.130 0.00 0.00 0.00 3.96
2310 2866 6.182627 ACTTTGATGAAACTCCTGATGCATA 58.817 36.000 0.00 0.00 0.00 3.14
2312 2868 5.619132 TGATGAAACTCCTGATGCATAGA 57.381 39.130 0.00 0.00 0.00 1.98
2328 2884 4.202243 TGCATAGACCACATTCATCGATCA 60.202 41.667 0.00 0.00 0.00 2.92
2358 2914 0.461870 TGCGTCACCATGATGTAGCC 60.462 55.000 6.98 0.00 35.86 3.93
2370 2926 0.322322 ATGTAGCCGTCCAAAACCGA 59.678 50.000 0.00 0.00 0.00 4.69
2381 2937 6.365518 GCCGTCCAAAACCGAAAAATTTATAA 59.634 34.615 0.00 0.00 0.00 0.98
2382 2938 7.619776 GCCGTCCAAAACCGAAAAATTTATAAC 60.620 37.037 0.00 0.00 0.00 1.89
2443 3001 5.736951 AATAAGCCAGATCAGTAGCCTAG 57.263 43.478 0.00 0.00 0.00 3.02
2451 3009 4.038642 CAGATCAGTAGCCTAGGAGGAAAC 59.961 50.000 14.75 2.11 37.67 2.78
2524 3082 0.395311 AGATCCTTAGGTCCGCACGA 60.395 55.000 0.00 0.00 0.00 4.35
2532 3090 1.892209 AGGTCCGCACGAAGATTTTT 58.108 45.000 0.00 0.00 0.00 1.94
2558 3116 6.421377 TTTGTTGTCATGATCACCTAATCG 57.579 37.500 0.00 0.00 0.00 3.34
2589 3147 8.137437 CCCTAGCTTCCAAAACAATTATGTATG 58.863 37.037 0.00 0.00 39.40 2.39
2640 3202 8.133627 CCATCTCTTCCTTAGCAACATAAATTG 58.866 37.037 0.00 0.00 0.00 2.32
2671 3233 0.947960 TCATTTTCTTTCGGTGCGCA 59.052 45.000 5.66 5.66 0.00 6.09
2697 3260 4.380531 CTCATGTTGAACTGTGTGTACCT 58.619 43.478 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.518249 AGATTAGGTGAGTTAGCTTTGGC 58.482 43.478 0.00 0.00 38.31 4.52
10 11 7.770897 ACAATAGATTAGGTGAGTTAGCTTTGG 59.229 37.037 0.00 0.00 38.31 3.28
11 12 8.723942 ACAATAGATTAGGTGAGTTAGCTTTG 57.276 34.615 0.00 0.00 38.31 2.77
12 13 7.707035 CGACAATAGATTAGGTGAGTTAGCTTT 59.293 37.037 0.00 0.00 38.31 3.51
13 14 7.203910 CGACAATAGATTAGGTGAGTTAGCTT 58.796 38.462 0.00 0.00 38.31 3.74
14 15 6.736243 GCGACAATAGATTAGGTGAGTTAGCT 60.736 42.308 0.00 0.00 40.87 3.32
15 16 5.402867 GCGACAATAGATTAGGTGAGTTAGC 59.597 44.000 0.00 0.00 0.00 3.09
16 17 6.638873 CAGCGACAATAGATTAGGTGAGTTAG 59.361 42.308 0.00 0.00 0.00 2.34
17 18 6.096423 ACAGCGACAATAGATTAGGTGAGTTA 59.904 38.462 0.00 0.00 0.00 2.24
18 19 5.105310 ACAGCGACAATAGATTAGGTGAGTT 60.105 40.000 0.00 0.00 0.00 3.01
19 20 4.402793 ACAGCGACAATAGATTAGGTGAGT 59.597 41.667 0.00 0.00 0.00 3.41
20 21 4.938080 ACAGCGACAATAGATTAGGTGAG 58.062 43.478 0.00 0.00 0.00 3.51
21 22 4.497507 CGACAGCGACAATAGATTAGGTGA 60.498 45.833 0.00 0.00 40.82 4.02
22 23 3.731216 CGACAGCGACAATAGATTAGGTG 59.269 47.826 0.00 0.00 40.82 4.00
23 24 3.795826 GCGACAGCGACAATAGATTAGGT 60.796 47.826 0.00 0.00 40.82 3.08
24 25 2.726760 GCGACAGCGACAATAGATTAGG 59.273 50.000 0.00 0.00 40.82 2.69
45 46 2.146342 GGTCGACATGCCTGAATATGG 58.854 52.381 18.91 0.00 0.00 2.74
46 47 2.837498 TGGTCGACATGCCTGAATATG 58.163 47.619 18.91 0.00 0.00 1.78
47 48 3.206150 GTTGGTCGACATGCCTGAATAT 58.794 45.455 18.91 0.00 0.00 1.28
48 49 2.627945 GTTGGTCGACATGCCTGAATA 58.372 47.619 18.91 0.00 0.00 1.75
49 50 1.453155 GTTGGTCGACATGCCTGAAT 58.547 50.000 18.91 0.00 0.00 2.57
50 51 0.605319 GGTTGGTCGACATGCCTGAA 60.605 55.000 18.91 0.00 0.00 3.02
51 52 1.003839 GGTTGGTCGACATGCCTGA 60.004 57.895 18.91 0.00 0.00 3.86
52 53 0.888736 TTGGTTGGTCGACATGCCTG 60.889 55.000 18.91 0.00 0.00 4.85
53 54 0.179004 TTTGGTTGGTCGACATGCCT 60.179 50.000 18.91 0.00 0.00 4.75
54 55 0.039527 GTTTGGTTGGTCGACATGCC 60.040 55.000 18.91 15.21 0.00 4.40
55 56 0.385473 CGTTTGGTTGGTCGACATGC 60.385 55.000 18.91 5.93 0.00 4.06
56 57 0.941542 ACGTTTGGTTGGTCGACATG 59.058 50.000 18.91 2.62 0.00 3.21
57 58 1.202604 AGACGTTTGGTTGGTCGACAT 60.203 47.619 18.91 0.00 35.87 3.06
58 59 0.176219 AGACGTTTGGTTGGTCGACA 59.824 50.000 18.91 0.27 35.87 4.35
59 60 0.580104 CAGACGTTTGGTTGGTCGAC 59.420 55.000 7.13 7.13 35.87 4.20
60 61 1.155424 GCAGACGTTTGGTTGGTCGA 61.155 55.000 8.31 0.00 35.87 4.20
61 62 1.278637 GCAGACGTTTGGTTGGTCG 59.721 57.895 8.31 0.00 35.87 4.79
62 63 0.028902 GTGCAGACGTTTGGTTGGTC 59.971 55.000 8.31 0.00 0.00 4.02
63 64 0.393808 AGTGCAGACGTTTGGTTGGT 60.394 50.000 8.31 0.00 0.00 3.67
64 65 0.029300 CAGTGCAGACGTTTGGTTGG 59.971 55.000 8.31 0.00 0.00 3.77
65 66 1.003545 CTCAGTGCAGACGTTTGGTTG 60.004 52.381 8.31 0.00 0.00 3.77
66 67 1.299541 CTCAGTGCAGACGTTTGGTT 58.700 50.000 8.31 0.00 0.00 3.67
108 109 2.186826 AATATTCCTGGTGGCGCGC 61.187 57.895 25.94 25.94 0.00 6.86
109 110 1.648720 CAATATTCCTGGTGGCGCG 59.351 57.895 0.00 0.00 0.00 6.86
110 111 1.103398 AGCAATATTCCTGGTGGCGC 61.103 55.000 0.00 0.00 0.00 6.53
111 112 1.873591 GTAGCAATATTCCTGGTGGCG 59.126 52.381 0.00 0.00 0.00 5.69
112 113 2.230660 GGTAGCAATATTCCTGGTGGC 58.769 52.381 0.00 0.00 0.00 5.01
113 114 2.104111 TCGGTAGCAATATTCCTGGTGG 59.896 50.000 0.00 0.00 0.00 4.61
114 115 3.131396 GTCGGTAGCAATATTCCTGGTG 58.869 50.000 0.00 0.00 0.00 4.17
115 116 2.223971 CGTCGGTAGCAATATTCCTGGT 60.224 50.000 0.00 0.00 0.00 4.00
116 117 2.404215 CGTCGGTAGCAATATTCCTGG 58.596 52.381 0.00 0.00 0.00 4.45
117 118 1.792949 GCGTCGGTAGCAATATTCCTG 59.207 52.381 0.00 0.00 34.19 3.86
118 119 1.411246 TGCGTCGGTAGCAATATTCCT 59.589 47.619 0.00 0.00 42.18 3.36
119 120 1.860676 TGCGTCGGTAGCAATATTCC 58.139 50.000 0.00 0.00 42.18 3.01
126 127 0.735978 CAGTGATTGCGTCGGTAGCA 60.736 55.000 0.00 0.00 43.59 3.49
127 128 1.999051 CAGTGATTGCGTCGGTAGC 59.001 57.895 0.00 0.00 0.00 3.58
128 129 1.999051 GCAGTGATTGCGTCGGTAG 59.001 57.895 0.00 0.00 44.09 3.18
129 130 4.178861 GCAGTGATTGCGTCGGTA 57.821 55.556 0.00 0.00 44.09 4.02
155 156 1.153568 CGACTGGTCGTGGCATCAT 60.154 57.895 14.05 0.00 46.99 2.45
175 176 3.869272 GGCTGCAATGACCGCGAG 61.869 66.667 8.23 0.00 0.00 5.03
176 177 3.974835 ATGGCTGCAATGACCGCGA 62.975 57.895 8.23 0.00 0.00 5.87
177 178 3.055080 AATGGCTGCAATGACCGCG 62.055 57.895 0.00 0.00 0.00 6.46
178 179 1.517694 CAATGGCTGCAATGACCGC 60.518 57.895 0.50 0.00 0.00 5.68
179 180 4.798288 CAATGGCTGCAATGACCG 57.202 55.556 0.50 0.00 0.00 4.79
207 208 3.606662 CCGGGACATCTCGGCGAT 61.607 66.667 11.27 0.00 39.78 4.58
211 212 3.537874 GACCCCGGGACATCTCGG 61.538 72.222 26.32 13.51 45.29 4.63
212 213 3.900892 CGACCCCGGGACATCTCG 61.901 72.222 26.32 15.47 0.00 4.04
213 214 4.222847 GCGACCCCGGGACATCTC 62.223 72.222 26.32 7.89 36.06 2.75
214 215 4.779733 AGCGACCCCGGGACATCT 62.780 66.667 26.32 10.94 36.06 2.90
215 216 4.530857 CAGCGACCCCGGGACATC 62.531 72.222 26.32 15.72 36.06 3.06
225 226 4.459089 GAGACTGGGGCAGCGACC 62.459 72.222 0.00 0.00 34.37 4.79
226 227 1.605058 TTAGAGACTGGGGCAGCGAC 61.605 60.000 0.00 0.00 34.37 5.19
227 228 1.304962 TTAGAGACTGGGGCAGCGA 60.305 57.895 0.00 0.00 34.37 4.93
228 229 1.153549 GTTAGAGACTGGGGCAGCG 60.154 63.158 0.00 0.00 34.37 5.18
229 230 0.543749 ATGTTAGAGACTGGGGCAGC 59.456 55.000 0.00 0.00 34.37 5.25
230 231 1.139853 GGATGTTAGAGACTGGGGCAG 59.860 57.143 0.00 0.00 37.52 4.85
231 232 1.204146 GGATGTTAGAGACTGGGGCA 58.796 55.000 0.00 0.00 0.00 5.36
232 233 0.105039 CGGATGTTAGAGACTGGGGC 59.895 60.000 0.00 0.00 0.00 5.80
233 234 0.105039 GCGGATGTTAGAGACTGGGG 59.895 60.000 0.00 0.00 0.00 4.96
234 235 1.115467 AGCGGATGTTAGAGACTGGG 58.885 55.000 0.00 0.00 0.00 4.45
235 236 1.751351 TCAGCGGATGTTAGAGACTGG 59.249 52.381 0.00 0.00 0.00 4.00
236 237 2.792890 CGTCAGCGGATGTTAGAGACTG 60.793 54.545 0.00 0.00 0.00 3.51
237 238 1.402259 CGTCAGCGGATGTTAGAGACT 59.598 52.381 0.00 0.00 0.00 3.24
238 239 1.132643 ACGTCAGCGGATGTTAGAGAC 59.867 52.381 5.83 0.00 40.34 3.36
239 240 1.132453 CACGTCAGCGGATGTTAGAGA 59.868 52.381 9.14 0.00 41.30 3.10
240 241 1.550065 CACGTCAGCGGATGTTAGAG 58.450 55.000 9.14 0.00 41.30 2.43
241 242 0.457853 GCACGTCAGCGGATGTTAGA 60.458 55.000 9.14 0.00 41.30 2.10
242 243 0.735978 TGCACGTCAGCGGATGTTAG 60.736 55.000 9.14 0.77 41.30 2.34
243 244 1.011968 GTGCACGTCAGCGGATGTTA 61.012 55.000 9.14 0.00 41.30 2.41
244 245 2.030412 TGCACGTCAGCGGATGTT 59.970 55.556 9.14 0.00 41.30 2.71
245 246 2.738521 GTGCACGTCAGCGGATGT 60.739 61.111 5.83 5.83 44.04 3.06
246 247 3.842126 CGTGCACGTCAGCGGATG 61.842 66.667 30.50 4.37 43.45 3.51
254 255 3.027170 CTTGGATGGCGTGCACGTC 62.027 63.158 35.41 35.41 45.40 4.34
255 256 3.049674 CTTGGATGGCGTGCACGT 61.050 61.111 36.80 20.53 42.22 4.49
256 257 3.803082 CCTTGGATGGCGTGCACG 61.803 66.667 34.01 34.01 43.27 5.34
257 258 4.120331 GCCTTGGATGGCGTGCAC 62.120 66.667 6.82 6.82 43.74 4.57
277 278 2.514592 ATGGCAGGATCGTTGCGG 60.515 61.111 12.84 0.00 42.42 5.69
278 279 1.769098 CTCATGGCAGGATCGTTGCG 61.769 60.000 0.84 2.55 42.42 4.85
279 280 2.020131 CTCATGGCAGGATCGTTGC 58.980 57.895 0.84 11.27 40.80 4.17
280 281 1.442526 GGCTCATGGCAGGATCGTTG 61.443 60.000 0.84 0.00 44.01 4.10
281 282 1.153086 GGCTCATGGCAGGATCGTT 60.153 57.895 0.84 0.00 44.01 3.85
282 283 0.760567 TAGGCTCATGGCAGGATCGT 60.761 55.000 0.84 2.53 44.01 3.73
283 284 0.320247 GTAGGCTCATGGCAGGATCG 60.320 60.000 0.84 0.00 44.01 3.69
284 285 0.761187 TGTAGGCTCATGGCAGGATC 59.239 55.000 0.84 0.00 44.01 3.36
285 286 1.133976 GTTGTAGGCTCATGGCAGGAT 60.134 52.381 0.84 0.00 44.01 3.24
286 287 0.253044 GTTGTAGGCTCATGGCAGGA 59.747 55.000 0.46 0.46 44.01 3.86
287 288 0.749454 GGTTGTAGGCTCATGGCAGG 60.749 60.000 8.20 0.00 44.01 4.85
288 289 1.091771 CGGTTGTAGGCTCATGGCAG 61.092 60.000 8.20 0.00 44.01 4.85
289 290 1.078497 CGGTTGTAGGCTCATGGCA 60.078 57.895 8.20 0.00 44.01 4.92
290 291 1.078426 ACGGTTGTAGGCTCATGGC 60.078 57.895 0.00 0.00 40.90 4.40
291 292 0.806102 CGACGGTTGTAGGCTCATGG 60.806 60.000 0.00 0.00 0.00 3.66
292 293 0.108804 ACGACGGTTGTAGGCTCATG 60.109 55.000 0.00 0.00 0.00 3.07
293 294 0.172803 GACGACGGTTGTAGGCTCAT 59.827 55.000 0.00 0.00 0.00 2.90
294 295 1.582968 GACGACGGTTGTAGGCTCA 59.417 57.895 0.00 0.00 0.00 4.26
298 299 1.131883 CTACAGGACGACGGTTGTAGG 59.868 57.143 19.44 0.00 39.37 3.18
336 491 0.758123 GAGGGCATGAGAGGAGGAAG 59.242 60.000 0.00 0.00 0.00 3.46
344 499 1.345422 ACTAATGGGGAGGGCATGAGA 60.345 52.381 0.00 0.00 0.00 3.27
345 500 1.143813 ACTAATGGGGAGGGCATGAG 58.856 55.000 0.00 0.00 0.00 2.90
347 502 2.057922 AGTACTAATGGGGAGGGCATG 58.942 52.381 0.00 0.00 0.00 4.06
348 503 2.514726 AGTACTAATGGGGAGGGCAT 57.485 50.000 0.00 0.00 0.00 4.40
349 504 3.424724 TTAGTACTAATGGGGAGGGCA 57.575 47.619 11.38 0.00 0.00 5.36
351 506 8.720537 TCTTTTATTTAGTACTAATGGGGAGGG 58.279 37.037 15.92 4.09 0.00 4.30
371 526 9.367160 AGATGTTGAATTTTCCCTCTTCTTTTA 57.633 29.630 0.00 0.00 0.00 1.52
376 839 7.311408 CAGAAGATGTTGAATTTTCCCTCTTC 58.689 38.462 10.58 10.58 38.28 2.87
383 846 7.383029 TGTTCATGCAGAAGATGTTGAATTTTC 59.617 33.333 0.00 0.00 36.34 2.29
387 850 5.970317 TGTTCATGCAGAAGATGTTGAAT 57.030 34.783 0.00 0.00 36.34 2.57
395 858 9.534565 GTAGAGTATATTTGTTCATGCAGAAGA 57.465 33.333 0.00 0.00 36.78 2.87
396 859 9.317936 TGTAGAGTATATTTGTTCATGCAGAAG 57.682 33.333 0.00 0.00 36.78 2.85
397 860 9.836864 ATGTAGAGTATATTTGTTCATGCAGAA 57.163 29.630 0.00 0.00 0.00 3.02
398 861 9.836864 AATGTAGAGTATATTTGTTCATGCAGA 57.163 29.630 0.00 0.00 0.00 4.26
436 938 3.063510 TCAGATCAGAACCCTTTGCTG 57.936 47.619 0.00 0.00 0.00 4.41
441 943 5.250313 ACTTTCAGATCAGATCAGAACCCTT 59.750 40.000 15.87 1.18 35.01 3.95
469 971 0.042708 GCGCGCTGTCATCAACTATG 60.043 55.000 26.67 0.00 36.88 2.23
487 989 1.467342 CTTAACTAACCCAACCTGCGC 59.533 52.381 0.00 0.00 0.00 6.09
489 991 7.108194 AGTAATACTTAACTAACCCAACCTGC 58.892 38.462 0.00 0.00 0.00 4.85
499 1001 7.836183 AGAACGGAGGGAGTAATACTTAACTAA 59.164 37.037 0.00 0.00 0.00 2.24
511 1013 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
512 1014 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
513 1015 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
514 1016 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
515 1017 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
516 1018 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
517 1019 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
518 1020 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
519 1021 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
520 1022 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
523 1025 9.120538 GCATAAAGTTGGGTCATCTATTTTAGA 57.879 33.333 0.00 0.00 39.50 2.10
524 1026 9.125026 AGCATAAAGTTGGGTCATCTATTTTAG 57.875 33.333 0.00 0.00 0.00 1.85
526 1028 7.961326 AGCATAAAGTTGGGTCATCTATTTT 57.039 32.000 0.00 0.00 0.00 1.82
527 1029 8.903820 GTTAGCATAAAGTTGGGTCATCTATTT 58.096 33.333 0.00 0.00 0.00 1.40
528 1030 8.275040 AGTTAGCATAAAGTTGGGTCATCTATT 58.725 33.333 0.00 0.00 0.00 1.73
529 1031 7.806180 AGTTAGCATAAAGTTGGGTCATCTAT 58.194 34.615 0.00 0.00 0.00 1.98
530 1032 7.195374 AGTTAGCATAAAGTTGGGTCATCTA 57.805 36.000 0.00 0.00 0.00 1.98
531 1033 6.067217 AGTTAGCATAAAGTTGGGTCATCT 57.933 37.500 0.00 0.00 0.00 2.90
532 1034 6.759497 AAGTTAGCATAAAGTTGGGTCATC 57.241 37.500 0.00 0.00 0.00 2.92
533 1035 6.493458 ACAAAGTTAGCATAAAGTTGGGTCAT 59.507 34.615 0.00 0.00 0.00 3.06
534 1036 5.830991 ACAAAGTTAGCATAAAGTTGGGTCA 59.169 36.000 0.00 0.00 0.00 4.02
535 1037 6.327279 ACAAAGTTAGCATAAAGTTGGGTC 57.673 37.500 0.00 0.00 0.00 4.46
536 1038 7.002276 AGTACAAAGTTAGCATAAAGTTGGGT 58.998 34.615 0.00 0.00 0.00 4.51
537 1039 7.448748 AGTACAAAGTTAGCATAAAGTTGGG 57.551 36.000 0.00 0.00 0.00 4.12
559 1061 9.783256 CAACTTTGTGCTAACTTTAACTTTAGT 57.217 29.630 4.83 0.00 0.00 2.24
560 1062 9.233232 CCAACTTTGTGCTAACTTTAACTTTAG 57.767 33.333 0.00 0.00 0.00 1.85
561 1063 8.192110 CCCAACTTTGTGCTAACTTTAACTTTA 58.808 33.333 0.00 0.00 0.00 1.85
562 1064 7.039270 CCCAACTTTGTGCTAACTTTAACTTT 58.961 34.615 0.00 0.00 0.00 2.66
563 1065 6.153851 ACCCAACTTTGTGCTAACTTTAACTT 59.846 34.615 0.00 0.00 0.00 2.66
564 1066 5.655090 ACCCAACTTTGTGCTAACTTTAACT 59.345 36.000 0.00 0.00 0.00 2.24
565 1067 5.898174 ACCCAACTTTGTGCTAACTTTAAC 58.102 37.500 0.00 0.00 0.00 2.01
566 1068 5.652891 TGACCCAACTTTGTGCTAACTTTAA 59.347 36.000 0.00 0.00 0.00 1.52
567 1069 5.194432 TGACCCAACTTTGTGCTAACTTTA 58.806 37.500 0.00 0.00 0.00 1.85
568 1070 4.020543 TGACCCAACTTTGTGCTAACTTT 58.979 39.130 0.00 0.00 0.00 2.66
569 1071 3.626930 TGACCCAACTTTGTGCTAACTT 58.373 40.909 0.00 0.00 0.00 2.66
570 1072 3.290948 TGACCCAACTTTGTGCTAACT 57.709 42.857 0.00 0.00 0.00 2.24
571 1073 4.584327 AATGACCCAACTTTGTGCTAAC 57.416 40.909 0.00 0.00 0.00 2.34
572 1074 6.909550 ATAAATGACCCAACTTTGTGCTAA 57.090 33.333 0.00 0.00 0.00 3.09
573 1075 6.909550 AATAAATGACCCAACTTTGTGCTA 57.090 33.333 0.00 0.00 0.00 3.49
574 1076 5.806654 AATAAATGACCCAACTTTGTGCT 57.193 34.783 0.00 0.00 0.00 4.40
575 1077 6.481644 TCAAAATAAATGACCCAACTTTGTGC 59.518 34.615 0.00 0.00 0.00 4.57
576 1078 8.430801 TTCAAAATAAATGACCCAACTTTGTG 57.569 30.769 0.00 0.00 0.00 3.33
577 1079 8.888716 GTTTCAAAATAAATGACCCAACTTTGT 58.111 29.630 0.00 0.00 0.00 2.83
578 1080 8.061268 CGTTTCAAAATAAATGACCCAACTTTG 58.939 33.333 0.00 0.00 0.00 2.77
579 1081 7.225734 CCGTTTCAAAATAAATGACCCAACTTT 59.774 33.333 0.00 0.00 0.00 2.66
580 1082 6.704050 CCGTTTCAAAATAAATGACCCAACTT 59.296 34.615 0.00 0.00 0.00 2.66
581 1083 6.041069 TCCGTTTCAAAATAAATGACCCAACT 59.959 34.615 0.00 0.00 0.00 3.16
582 1084 6.217294 TCCGTTTCAAAATAAATGACCCAAC 58.783 36.000 0.00 0.00 0.00 3.77
583 1085 6.406692 TCCGTTTCAAAATAAATGACCCAA 57.593 33.333 0.00 0.00 0.00 4.12
584 1086 5.047660 CCTCCGTTTCAAAATAAATGACCCA 60.048 40.000 0.00 0.00 0.00 4.51
585 1087 5.407502 CCTCCGTTTCAAAATAAATGACCC 58.592 41.667 0.00 0.00 0.00 4.46
586 1088 5.184287 TCCCTCCGTTTCAAAATAAATGACC 59.816 40.000 0.00 0.00 0.00 4.02
587 1089 6.072119 ACTCCCTCCGTTTCAAAATAAATGAC 60.072 38.462 0.00 0.00 0.00 3.06
588 1090 6.007703 ACTCCCTCCGTTTCAAAATAAATGA 58.992 36.000 0.00 0.00 0.00 2.57
589 1091 6.267496 ACTCCCTCCGTTTCAAAATAAATG 57.733 37.500 0.00 0.00 0.00 2.32
590 1092 6.943718 TGTACTCCCTCCGTTTCAAAATAAAT 59.056 34.615 0.00 0.00 0.00 1.40
591 1093 6.297582 TGTACTCCCTCCGTTTCAAAATAAA 58.702 36.000 0.00 0.00 0.00 1.40
592 1094 5.867330 TGTACTCCCTCCGTTTCAAAATAA 58.133 37.500 0.00 0.00 0.00 1.40
593 1095 5.486735 TGTACTCCCTCCGTTTCAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
594 1096 4.360951 TGTACTCCCTCCGTTTCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
595 1097 3.842007 TGTACTCCCTCCGTTTCAAAA 57.158 42.857 0.00 0.00 0.00 2.44
596 1098 3.842007 TTGTACTCCCTCCGTTTCAAA 57.158 42.857 0.00 0.00 0.00 2.69
597 1099 3.495453 CCTTTGTACTCCCTCCGTTTCAA 60.495 47.826 0.00 0.00 0.00 2.69
598 1100 2.038033 CCTTTGTACTCCCTCCGTTTCA 59.962 50.000 0.00 0.00 0.00 2.69
599 1101 2.301009 TCCTTTGTACTCCCTCCGTTTC 59.699 50.000 0.00 0.00 0.00 2.78
600 1102 2.038164 GTCCTTTGTACTCCCTCCGTTT 59.962 50.000 0.00 0.00 0.00 3.60
601 1103 1.622312 GTCCTTTGTACTCCCTCCGTT 59.378 52.381 0.00 0.00 0.00 4.44
602 1104 1.264295 GTCCTTTGTACTCCCTCCGT 58.736 55.000 0.00 0.00 0.00 4.69
603 1105 1.067071 GTGTCCTTTGTACTCCCTCCG 60.067 57.143 0.00 0.00 0.00 4.63
604 1106 1.067071 CGTGTCCTTTGTACTCCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
605 1107 1.891150 TCGTGTCCTTTGTACTCCCTC 59.109 52.381 0.00 0.00 0.00 4.30
606 1108 1.617357 GTCGTGTCCTTTGTACTCCCT 59.383 52.381 0.00 0.00 0.00 4.20
607 1109 1.342174 TGTCGTGTCCTTTGTACTCCC 59.658 52.381 0.00 0.00 0.00 4.30
608 1110 2.798847 GTTGTCGTGTCCTTTGTACTCC 59.201 50.000 0.00 0.00 0.00 3.85
609 1111 2.470257 CGTTGTCGTGTCCTTTGTACTC 59.530 50.000 0.00 0.00 0.00 2.59
610 1112 2.466846 CGTTGTCGTGTCCTTTGTACT 58.533 47.619 0.00 0.00 0.00 2.73
611 1113 2.916735 CGTTGTCGTGTCCTTTGTAC 57.083 50.000 0.00 0.00 0.00 2.90
623 1125 1.004292 GTTCCCACTTGAACGTTGTCG 60.004 52.381 5.00 0.00 43.34 4.35
645 1147 3.882888 GAGATTTTCCTGGTTCACACACA 59.117 43.478 0.00 0.00 0.00 3.72
679 1181 2.530460 AGGCAGTGGCAATTATTGGA 57.470 45.000 20.04 0.00 43.71 3.53
749 1251 2.540515 GTTCATTGTGCTAGCTCGCTA 58.459 47.619 17.23 3.88 0.00 4.26
848 1350 7.010339 ACTTGCTTTCTAACTAACCTGAGAT 57.990 36.000 0.00 0.00 0.00 2.75
876 1413 4.240096 GGACAATTGCTTCAATCACAAGG 58.760 43.478 5.05 0.00 32.43 3.61
905 1442 1.445582 GGTCTAAGTGGGACGCACG 60.446 63.158 16.07 3.65 44.14 5.34
908 1445 1.660560 TAGCGGTCTAAGTGGGACGC 61.661 60.000 0.00 0.00 40.45 5.19
909 1446 0.381089 CTAGCGGTCTAAGTGGGACG 59.619 60.000 0.00 0.00 34.82 4.79
1016 1553 3.760035 CCCCCGTCAGGACACTCG 61.760 72.222 0.00 0.00 41.02 4.18
1024 1561 3.628646 CTTTCAGGGCCCCCGTCAG 62.629 68.421 21.43 4.47 41.95 3.51
1025 1562 3.646715 CTTTCAGGGCCCCCGTCA 61.647 66.667 21.43 0.00 41.95 4.35
1088 1625 3.505790 TTGCGCACCCCCTTGACAT 62.506 57.895 11.12 0.00 0.00 3.06
1090 1627 3.365265 CTTGCGCACCCCCTTGAC 61.365 66.667 11.12 0.00 0.00 3.18
1120 1657 8.044574 TCCATGGAGGATAGTTCATTATTCAA 57.955 34.615 11.44 0.00 43.07 2.69
1138 1675 4.239428 TCATGAGAAAAGCATCCATGGA 57.761 40.909 18.88 18.88 36.28 3.41
1258 1795 9.399797 AGTGTCTTCAGCATTGATATATTTCAA 57.600 29.630 10.48 10.48 39.77 2.69
1274 1811 4.367450 GCTATCCAGCTTAGTGTCTTCAG 58.633 47.826 0.00 0.00 44.93 3.02
1418 1964 3.261897 GGTCTTGGAGAAGGTCTCATGAA 59.738 47.826 7.52 0.00 45.12 2.57
1539 2085 4.943705 GGCACATGTCCATCTTCTTCTTTA 59.056 41.667 0.00 0.00 0.00 1.85
1620 2175 3.119495 ACACACTTGGTTTGCAAGAGTTC 60.119 43.478 0.00 0.00 32.64 3.01
1641 2196 9.481340 AATTGAATTTTCCTTTTAGCTCTTGAC 57.519 29.630 0.00 0.00 0.00 3.18
1664 2219 5.948162 ACACTGATATGAAAGCCTGACAATT 59.052 36.000 0.00 0.00 0.00 2.32
1737 2292 3.270027 TCAGCATAACGTTGATTCCCAG 58.730 45.455 11.99 0.00 28.60 4.45
1763 2318 1.159285 TGATGCACGCTTCCTTCTTG 58.841 50.000 0.00 0.00 0.00 3.02
1916 2471 9.167311 GAAAAACTACAATCTGAGACCATACAT 57.833 33.333 0.00 0.00 0.00 2.29
1978 2533 7.495279 TGGATGTAAATTTATGGAATTGCTTGC 59.505 33.333 0.31 0.00 37.98 4.01
1979 2534 8.945481 TGGATGTAAATTTATGGAATTGCTTG 57.055 30.769 0.31 0.00 37.98 4.01
1995 2550 8.674263 AAACATGAGCAAAATTTGGATGTAAA 57.326 26.923 7.89 0.00 0.00 2.01
2062 2617 9.981460 ATTCACTTCTTCTTATGGAAACCTAAT 57.019 29.630 0.00 0.00 33.07 1.73
2110 2666 7.047891 TGGCTAGGAATACACACTTATTCTTG 58.952 38.462 0.00 0.00 38.19 3.02
2118 2674 3.441101 TCACTGGCTAGGAATACACACT 58.559 45.455 0.85 0.00 0.00 3.55
2127 2683 1.103803 GACACGATCACTGGCTAGGA 58.896 55.000 0.85 0.00 0.00 2.94
2134 2690 3.284336 TCGGGGACACGATCACTG 58.716 61.111 0.00 0.00 38.65 3.66
2147 2703 8.690203 ATCTAGACTATCTGAATATGATCGGG 57.310 38.462 0.00 0.00 0.00 5.14
2158 2714 8.809468 AGTGTACAACAATCTAGACTATCTGA 57.191 34.615 0.00 0.00 0.00 3.27
2159 2715 9.295214 CAAGTGTACAACAATCTAGACTATCTG 57.705 37.037 0.00 0.00 0.00 2.90
2205 2761 5.843019 TGAAGGAAAGAGAATGGTAAGGT 57.157 39.130 0.00 0.00 0.00 3.50
2225 2781 8.985315 AAGAAGAGTATATGGATGCAAAATGA 57.015 30.769 0.00 0.00 0.00 2.57
2248 2804 3.373830 TCATGGGAAAAGGGGCATAAAG 58.626 45.455 0.00 0.00 0.00 1.85
2257 2813 9.228949 CTCTTGATAGATTATCATGGGAAAAGG 57.771 37.037 6.15 0.00 44.06 3.11
2297 2853 2.470990 TGTGGTCTATGCATCAGGAGT 58.529 47.619 0.19 0.00 0.00 3.85
2308 2864 5.930569 CACATGATCGATGAATGTGGTCTAT 59.069 40.000 27.89 6.12 44.76 1.98
2310 2866 4.124970 CACATGATCGATGAATGTGGTCT 58.875 43.478 27.89 7.16 44.76 3.85
2358 2914 8.421701 CAGTTATAAATTTTTCGGTTTTGGACG 58.578 33.333 0.00 0.00 0.00 4.79
2370 2926 7.899172 AGCCTAACCCTCCAGTTATAAATTTTT 59.101 33.333 0.00 0.00 32.00 1.94
2381 2937 1.343176 GGTCTAGCCTAACCCTCCAGT 60.343 57.143 0.00 0.00 0.00 4.00
2382 2938 1.343075 TGGTCTAGCCTAACCCTCCAG 60.343 57.143 5.06 0.00 38.35 3.86
2510 3068 2.295253 AATCTTCGTGCGGACCTAAG 57.705 50.000 0.00 5.99 0.00 2.18
2524 3082 7.711772 TGATCATGACAACAAAGCAAAAATCTT 59.288 29.630 0.00 0.00 0.00 2.40
2532 3090 3.489355 AGGTGATCATGACAACAAAGCA 58.511 40.909 13.47 0.00 0.00 3.91
2558 3116 2.025321 TGTTTTGGAAGCTAGGGATCCC 60.025 50.000 24.59 24.59 32.01 3.85
2596 3158 8.632906 AGAGATGGGAAACATGATTATGAATC 57.367 34.615 4.20 2.14 40.72 2.52
2609 3171 4.222124 TGCTAAGGAAGAGATGGGAAAC 57.778 45.455 0.00 0.00 0.00 2.78
2651 3213 1.539388 TGCGCACCGAAAGAAAATGAT 59.461 42.857 5.66 0.00 0.00 2.45
2664 3226 0.028505 CAACATGAGCTATGCGCACC 59.971 55.000 14.90 3.95 41.64 5.01
2671 3233 4.645535 ACACACAGTTCAACATGAGCTAT 58.354 39.130 0.00 0.00 35.71 2.97
2697 3260 2.355108 GGCACATTACAGAGAGCAAGGA 60.355 50.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.