Multiple sequence alignment - TraesCS6D01G399200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G399200 chr6D 100.000 3575 0 0 1 3575 469932507 469928933 0.000000e+00 6602
1 TraesCS6D01G399200 chrUn 92.791 3135 158 22 35 3144 247573596 247570505 0.000000e+00 4475
2 TraesCS6D01G399200 chrUn 92.791 3135 158 22 35 3144 252718563 252721654 0.000000e+00 4475
3 TraesCS6D01G399200 chrUn 92.791 3135 158 22 35 3144 303071308 303068217 0.000000e+00 4475
4 TraesCS6D01G399200 chrUn 74.799 1242 279 30 934 2158 74694856 74693632 2.440000e-146 529
5 TraesCS6D01G399200 chrUn 73.913 1242 297 22 930 2153 269564763 269565995 1.160000e-129 473
6 TraesCS6D01G399200 chrUn 79.281 695 128 15 935 1621 325009784 325009098 4.180000e-129 472
7 TraesCS6D01G399200 chrUn 75.711 984 201 29 930 1891 62149069 62150036 3.250000e-125 459
8 TraesCS6D01G399200 chrUn 83.575 207 28 3 3138 3342 247570476 247570274 4.710000e-44 189
9 TraesCS6D01G399200 chrUn 83.575 207 28 3 3138 3342 252721683 252721885 4.710000e-44 189
10 TraesCS6D01G399200 chrUn 83.575 207 28 3 3138 3342 303068188 303067986 4.710000e-44 189
11 TraesCS6D01G399200 chr7D 75.740 1183 248 26 934 2095 53342770 53341606 3.120000e-155 558
12 TraesCS6D01G399200 chr6A 75.633 1145 233 34 977 2101 614792961 614791843 8.790000e-146 527
13 TraesCS6D01G399200 chr6A 76.509 928 192 19 959 1870 610593987 610593070 1.930000e-132 483
14 TraesCS6D01G399200 chr6B 74.770 1197 285 14 968 2151 707911689 707910497 4.090000e-144 521
15 TraesCS6D01G399200 chr6B 75.133 1130 238 35 978 2081 716107322 716106210 1.150000e-134 490
16 TraesCS6D01G399200 chr6B 74.046 1206 285 23 964 2153 707791046 707789853 5.400000e-128 468
17 TraesCS6D01G399200 chr6B 75.359 974 222 12 930 1891 707839607 707838640 1.510000e-123 453


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G399200 chr6D 469928933 469932507 3574 True 6602 6602 100.000 1 3575 1 chr6D.!!$R1 3574
1 TraesCS6D01G399200 chrUn 247570274 247573596 3322 True 2332 4475 88.183 35 3342 2 chrUn.!!$R3 3307
2 TraesCS6D01G399200 chrUn 252718563 252721885 3322 False 2332 4475 88.183 35 3342 2 chrUn.!!$F3 3307
3 TraesCS6D01G399200 chrUn 303067986 303071308 3322 True 2332 4475 88.183 35 3342 2 chrUn.!!$R4 3307
4 TraesCS6D01G399200 chrUn 74693632 74694856 1224 True 529 529 74.799 934 2158 1 chrUn.!!$R1 1224
5 TraesCS6D01G399200 chrUn 269564763 269565995 1232 False 473 473 73.913 930 2153 1 chrUn.!!$F2 1223
6 TraesCS6D01G399200 chrUn 325009098 325009784 686 True 472 472 79.281 935 1621 1 chrUn.!!$R2 686
7 TraesCS6D01G399200 chrUn 62149069 62150036 967 False 459 459 75.711 930 1891 1 chrUn.!!$F1 961
8 TraesCS6D01G399200 chr7D 53341606 53342770 1164 True 558 558 75.740 934 2095 1 chr7D.!!$R1 1161
9 TraesCS6D01G399200 chr6A 614791843 614792961 1118 True 527 527 75.633 977 2101 1 chr6A.!!$R2 1124
10 TraesCS6D01G399200 chr6A 610593070 610593987 917 True 483 483 76.509 959 1870 1 chr6A.!!$R1 911
11 TraesCS6D01G399200 chr6B 707910497 707911689 1192 True 521 521 74.770 968 2151 1 chr6B.!!$R3 1183
12 TraesCS6D01G399200 chr6B 716106210 716107322 1112 True 490 490 75.133 978 2081 1 chr6B.!!$R4 1103
13 TraesCS6D01G399200 chr6B 707789853 707791046 1193 True 468 468 74.046 964 2153 1 chr6B.!!$R1 1189
14 TraesCS6D01G399200 chr6B 707838640 707839607 967 True 453 453 75.359 930 1891 1 chr6B.!!$R2 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 852 0.036952 ACAATGTCAGCGGGTCTCAG 60.037 55.0 0.0 0.0 0.00 3.35 F
1460 1488 0.541863 CGGAAGGAAGGCAGGTACAT 59.458 55.0 0.0 0.0 0.00 2.29 F
1692 1726 0.033504 TGTCTCTCCAAGTCGGCAAC 59.966 55.0 0.0 0.0 33.14 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1677 0.035458 AACTTTCCTCTGCGTCCCAG 59.965 55.0 0.00 0.0 43.17 4.45 R
2458 2501 0.036022 GTGAGAAGAGCAGGCAAGGT 59.964 55.0 0.00 0.0 0.00 3.50 R
3177 3255 0.178903 AGAGAGGCCACACCAAGGTA 60.179 55.0 5.01 0.0 43.14 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.935241 TTTAGCAAGCAATTCCATAAATTTACA 57.065 25.926 0.00 0.00 35.32 2.41
32 33 8.652810 AGCAAGCAATTCCATAAATTTACATC 57.347 30.769 0.00 0.00 35.32 3.06
33 34 7.712205 AGCAAGCAATTCCATAAATTTACATCC 59.288 33.333 0.00 0.00 35.32 3.51
34 35 7.495279 GCAAGCAATTCCATAAATTTACATCCA 59.505 33.333 0.00 0.00 35.32 3.41
35 36 9.381033 CAAGCAATTCCATAAATTTACATCCAA 57.619 29.630 0.00 0.00 35.32 3.53
36 37 9.956640 AAGCAATTCCATAAATTTACATCCAAA 57.043 25.926 0.00 0.00 35.32 3.28
43 44 9.956640 TCCATAAATTTACATCCAAATTTTGCT 57.043 25.926 10.72 0.00 42.59 3.91
48 49 8.851541 AATTTACATCCAAATTTTGCTCATGT 57.148 26.923 16.95 16.95 35.12 3.21
49 50 8.851541 ATTTACATCCAAATTTTGCTCATGTT 57.148 26.923 17.54 5.26 30.99 2.71
50 51 8.674263 TTTACATCCAAATTTTGCTCATGTTT 57.326 26.923 17.54 4.77 30.99 2.83
92 93 9.733556 ATGTCAAATGTTTGTAGTAATGTCCTA 57.266 29.630 5.48 0.00 39.18 2.94
93 94 9.733556 TGTCAAATGTTTGTAGTAATGTCCTAT 57.266 29.630 5.48 0.00 39.18 2.57
110 111 9.853177 AATGTCCTATTAGGTTTCCATAAGAAG 57.147 33.333 9.57 0.00 36.53 2.85
112 113 9.053472 TGTCCTATTAGGTTTCCATAAGAAGAA 57.947 33.333 9.57 0.00 36.53 2.52
113 114 9.549078 GTCCTATTAGGTTTCCATAAGAAGAAG 57.451 37.037 9.57 0.00 36.53 2.85
114 115 9.280456 TCCTATTAGGTTTCCATAAGAAGAAGT 57.720 33.333 9.57 0.00 36.53 3.01
115 116 9.331282 CCTATTAGGTTTCCATAAGAAGAAGTG 57.669 37.037 1.17 0.00 35.40 3.16
164 166 7.048512 ACAAGAATAAGTGTGTATTCCTAGCC 58.951 38.462 2.16 0.00 40.10 3.93
177 179 0.103208 CCTAGCCAGTGATCGTGTCC 59.897 60.000 0.00 0.00 0.00 4.02
189 191 3.594603 ATCGTGTCCCCGATCATATTC 57.405 47.619 0.00 0.00 43.74 1.75
235 237 3.269178 TGTATTGTTGAGATGCGATGCA 58.731 40.909 0.00 0.00 44.86 3.96
255 257 4.202567 TGCACCTTACCATTCTCTTTCCTT 60.203 41.667 0.00 0.00 0.00 3.36
278 280 8.295288 CCTTCATTTTGCATCCATATACTCTTC 58.705 37.037 0.00 0.00 0.00 2.87
287 289 6.317391 GCATCCATATACTCTTCTTTATGCCC 59.683 42.308 0.00 0.00 32.00 5.36
327 329 7.984422 TCTATCAAGAGCAACTTTGATGAAA 57.016 32.000 9.33 0.00 36.61 2.69
338 340 4.401022 ACTTTGATGAAACTCCTGATGCA 58.599 39.130 0.00 0.00 0.00 3.96
340 342 6.182627 ACTTTGATGAAACTCCTGATGCATA 58.817 36.000 0.00 0.00 0.00 3.14
342 344 5.619132 TGATGAAACTCCTGATGCATAGA 57.381 39.130 0.00 0.00 0.00 1.98
358 360 4.202243 TGCATAGACCACATTCATCGATCA 60.202 41.667 0.00 0.00 0.00 2.92
388 390 0.461870 TGCGTCACCATGATGTAGCC 60.462 55.000 6.98 0.00 35.86 3.93
400 402 0.322322 ATGTAGCCGTCCAAAACCGA 59.678 50.000 0.00 0.00 0.00 4.69
411 413 6.365518 GCCGTCCAAAACCGAAAAATTTATAA 59.634 34.615 0.00 0.00 0.00 0.98
412 414 7.619776 GCCGTCCAAAACCGAAAAATTTATAAC 60.620 37.037 0.00 0.00 0.00 1.89
473 477 5.736951 AATAAGCCAGATCAGTAGCCTAG 57.263 43.478 0.00 0.00 0.00 3.02
481 485 4.038642 CAGATCAGTAGCCTAGGAGGAAAC 59.961 50.000 14.75 2.11 37.67 2.78
554 558 0.395311 AGATCCTTAGGTCCGCACGA 60.395 55.000 0.00 0.00 0.00 4.35
562 566 1.892209 AGGTCCGCACGAAGATTTTT 58.108 45.000 0.00 0.00 0.00 1.94
588 592 6.421377 TTTGTTGTCATGATCACCTAATCG 57.579 37.500 0.00 0.00 0.00 3.34
619 623 8.137437 CCCTAGCTTCCAAAACAATTATGTATG 58.863 37.037 0.00 0.00 39.40 2.39
670 678 8.133627 CCATCTCTTCCTTAGCAACATAAATTG 58.866 37.037 0.00 0.00 0.00 2.32
701 709 0.947960 TCATTTTCTTTCGGTGCGCA 59.052 45.000 5.66 5.66 0.00 6.09
727 736 4.380531 CTCATGTTGAACTGTGTGTACCT 58.619 43.478 0.00 0.00 0.00 3.08
767 776 2.230992 GCCAAACAAGCATGTGGATGTA 59.769 45.455 0.00 0.00 40.46 2.29
770 779 5.581605 CCAAACAAGCATGTGGATGTATAC 58.418 41.667 0.00 0.00 40.46 1.47
804 813 5.041287 TGTCAGTATGTCTATAACTTGCGC 58.959 41.667 0.00 0.00 37.40 6.09
843 852 0.036952 ACAATGTCAGCGGGTCTCAG 60.037 55.000 0.00 0.00 0.00 3.35
857 866 4.092968 CGGGTCTCAGTTATTTAGTTGCAC 59.907 45.833 0.00 0.00 0.00 4.57
867 876 7.063544 CAGTTATTTAGTTGCACTACACTCTCC 59.936 40.741 0.00 0.00 28.93 3.71
894 903 4.519540 AAAGGCACGCTGATGTTTATTT 57.480 36.364 0.00 0.00 0.00 1.40
902 911 4.699735 ACGCTGATGTTTATTTGTCCATGA 59.300 37.500 0.00 0.00 0.00 3.07
908 917 5.643379 TGTTTATTTGTCCATGAGAAGGC 57.357 39.130 0.00 0.00 0.00 4.35
997 1019 7.342581 TGGCAGTATAATAATCACCACTTCAA 58.657 34.615 0.00 0.00 0.00 2.69
1232 1257 2.600470 TCTAACACGGAAACAACGGT 57.400 45.000 0.00 0.00 35.23 4.83
1460 1488 0.541863 CGGAAGGAAGGCAGGTACAT 59.458 55.000 0.00 0.00 0.00 2.29
1503 1534 6.829229 AGATGTTTCAATGAGCTCATCAAA 57.171 33.333 28.83 24.52 42.53 2.69
1626 1657 5.960105 CGAAGAGAACTTTGTCACTTTTGTC 59.040 40.000 0.00 0.00 36.39 3.18
1630 1661 4.094442 AGAACTTTGTCACTTTTGTCGGTC 59.906 41.667 0.00 0.00 0.00 4.79
1646 1677 0.533085 GGTCTTCCCGGAATAGCTGC 60.533 60.000 0.73 0.00 0.00 5.25
1674 1708 2.320367 CAGAGGAAAGTTCGTCGTCTG 58.680 52.381 11.06 11.06 45.94 3.51
1692 1726 0.033504 TGTCTCTCCAAGTCGGCAAC 59.966 55.000 0.00 0.00 33.14 4.17
1757 1794 5.457140 TGTCCGATCTTTAAATGTGTTTGC 58.543 37.500 0.00 0.00 0.00 3.68
1947 1987 7.559590 AATCAAGCATCTACAATACCTTGAC 57.440 36.000 3.35 0.00 40.71 3.18
2016 2056 4.193826 TGTCAATCTCAGTAGCTTGGTC 57.806 45.455 0.00 0.00 31.20 4.02
2040 2083 5.947228 ATCTACTTGTTGACAATGGTGTG 57.053 39.130 0.00 0.00 38.41 3.82
2188 2231 6.093219 CCTTGATCTGTTTGATGTTCCAGTAG 59.907 42.308 0.00 0.00 35.14 2.57
2209 2252 1.765074 GGGGTTACCAAGGAGTGCA 59.235 57.895 2.98 0.00 39.85 4.57
2239 2282 6.421485 AGTTTCATTGCATACCAATCTCTCT 58.579 36.000 0.00 0.00 42.15 3.10
2245 2288 2.615912 GCATACCAATCTCTCTGCAACC 59.384 50.000 0.00 0.00 0.00 3.77
2247 2290 2.777832 ACCAATCTCTCTGCAACCTC 57.222 50.000 0.00 0.00 0.00 3.85
2287 2330 2.138320 CTGTAACTATCTGGCATGGCG 58.862 52.381 15.27 9.60 0.00 5.69
2289 2332 1.128200 TAACTATCTGGCATGGCGGT 58.872 50.000 25.80 16.11 0.00 5.68
2307 2350 1.073284 GGTGGCTTCTTACTGGAACCA 59.927 52.381 0.00 0.00 0.00 3.67
2319 2362 0.844661 TGGAACCATGGTACCCTGCT 60.845 55.000 27.07 9.76 0.00 4.24
2321 2364 0.912486 GAACCATGGTACCCTGCTCT 59.088 55.000 20.12 0.00 0.00 4.09
2355 2398 2.327200 AGCTAATTACCTGGCGTTCC 57.673 50.000 0.00 0.00 0.00 3.62
2456 2499 4.034510 GCAACCAGATCTGTGTATACTTGC 59.965 45.833 21.11 17.78 0.00 4.01
2458 2501 5.420725 ACCAGATCTGTGTATACTTGCAA 57.579 39.130 21.11 0.00 0.00 4.08
2463 2506 5.877012 AGATCTGTGTATACTTGCAACCTTG 59.123 40.000 4.17 0.00 0.00 3.61
2484 2527 1.204467 CCTGCTCTTCTCACTCTGGAC 59.796 57.143 0.00 0.00 0.00 4.02
2523 2566 2.430465 TCATCAGAAGGCAAGCTCAAC 58.570 47.619 0.00 0.00 0.00 3.18
2644 2688 8.734386 CAAGATTTATCTAGCCAAAACAGAGTT 58.266 33.333 0.00 0.00 35.76 3.01
2756 2800 1.748493 GGTGGTGTTGAGTCTGCAAAA 59.252 47.619 0.00 0.00 0.00 2.44
2758 2802 2.423538 GTGGTGTTGAGTCTGCAAAAGT 59.576 45.455 0.00 0.00 0.00 2.66
2794 2838 0.385390 GCTATGGCAAATCCCAACCG 59.615 55.000 0.00 0.00 38.61 4.44
2801 2845 1.471287 GCAAATCCCAACCGTCCTAAC 59.529 52.381 0.00 0.00 0.00 2.34
2819 2863 5.479375 TCCTAACCTACTCTTTGTGAATCGT 59.521 40.000 0.00 0.00 0.00 3.73
2821 2865 7.177216 TCCTAACCTACTCTTTGTGAATCGTAA 59.823 37.037 0.00 0.00 0.00 3.18
2836 2880 5.810587 TGAATCGTAATCTACCAGCAAAGTC 59.189 40.000 0.00 0.00 0.00 3.01
2837 2881 4.794278 TCGTAATCTACCAGCAAAGTCA 57.206 40.909 0.00 0.00 0.00 3.41
2840 2884 4.091509 CGTAATCTACCAGCAAAGTCACAC 59.908 45.833 0.00 0.00 0.00 3.82
2842 2886 3.769739 TCTACCAGCAAAGTCACACAT 57.230 42.857 0.00 0.00 0.00 3.21
2844 2888 5.222079 TCTACCAGCAAAGTCACACATTA 57.778 39.130 0.00 0.00 0.00 1.90
2859 2903 7.066645 AGTCACACATTAGATGCTAACTACGTA 59.933 37.037 0.00 0.00 0.00 3.57
2860 2904 7.699391 GTCACACATTAGATGCTAACTACGTAA 59.301 37.037 0.00 0.00 0.00 3.18
2869 2913 5.585820 TGCTAACTACGTAATGGACATGA 57.414 39.130 0.00 0.00 0.00 3.07
2872 2916 5.107453 GCTAACTACGTAATGGACATGATGC 60.107 44.000 0.00 0.00 0.00 3.91
2884 2928 3.609853 GACATGATGCCACTTCAGGTAA 58.390 45.455 0.00 0.00 38.15 2.85
2885 2929 4.202441 GACATGATGCCACTTCAGGTAAT 58.798 43.478 0.00 0.00 38.15 1.89
2887 2931 5.126067 ACATGATGCCACTTCAGGTAATAC 58.874 41.667 0.00 0.00 36.45 1.89
2903 2947 9.847224 TCAGGTAATACTAATTCCCAAGATTTC 57.153 33.333 0.00 0.00 0.00 2.17
2904 2948 9.627123 CAGGTAATACTAATTCCCAAGATTTCA 57.373 33.333 0.00 0.00 0.00 2.69
2907 2951 9.899226 GTAATACTAATTCCCAAGATTTCATGC 57.101 33.333 0.00 0.00 0.00 4.06
2908 2952 8.537728 AATACTAATTCCCAAGATTTCATGCA 57.462 30.769 0.00 0.00 0.00 3.96
2909 2953 8.716674 ATACTAATTCCCAAGATTTCATGCAT 57.283 30.769 0.00 0.00 0.00 3.96
2910 2954 7.047460 ACTAATTCCCAAGATTTCATGCATC 57.953 36.000 0.00 0.00 0.00 3.91
2911 2955 6.837568 ACTAATTCCCAAGATTTCATGCATCT 59.162 34.615 0.00 2.23 31.94 2.90
2912 2956 5.786264 ATTCCCAAGATTTCATGCATCTC 57.214 39.130 0.00 0.00 30.19 2.75
2914 2958 4.863548 TCCCAAGATTTCATGCATCTCTT 58.136 39.130 0.00 0.34 30.19 2.85
2915 2959 5.266788 TCCCAAGATTTCATGCATCTCTTT 58.733 37.500 0.00 0.00 30.19 2.52
2917 2961 6.544931 TCCCAAGATTTCATGCATCTCTTTAG 59.455 38.462 0.00 0.00 30.19 1.85
2926 2970 5.416639 TCATGCATCTCTTTAGTTGTTGCAT 59.583 36.000 0.00 1.90 46.86 3.96
2928 2972 4.761227 TGCATCTCTTTAGTTGTTGCATCA 59.239 37.500 0.00 0.00 34.03 3.07
2931 2975 7.121020 TGCATCTCTTTAGTTGTTGCATCATAA 59.879 33.333 0.00 0.00 34.03 1.90
2950 2994 2.748209 AAACCCTGCCTGTAGTTGTT 57.252 45.000 0.00 0.00 0.00 2.83
2952 2996 3.868619 AACCCTGCCTGTAGTTGTTTA 57.131 42.857 0.00 0.00 0.00 2.01
2953 2997 3.868619 ACCCTGCCTGTAGTTGTTTAA 57.131 42.857 0.00 0.00 0.00 1.52
2954 2998 4.173290 ACCCTGCCTGTAGTTGTTTAAA 57.827 40.909 0.00 0.00 0.00 1.52
2955 2999 4.736473 ACCCTGCCTGTAGTTGTTTAAAT 58.264 39.130 0.00 0.00 0.00 1.40
2956 3000 5.883180 ACCCTGCCTGTAGTTGTTTAAATA 58.117 37.500 0.00 0.00 0.00 1.40
2957 3001 5.944007 ACCCTGCCTGTAGTTGTTTAAATAG 59.056 40.000 0.00 0.00 0.00 1.73
2958 3002 5.357032 CCCTGCCTGTAGTTGTTTAAATAGG 59.643 44.000 0.00 0.00 0.00 2.57
2959 3003 5.944007 CCTGCCTGTAGTTGTTTAAATAGGT 59.056 40.000 0.00 0.00 0.00 3.08
2960 3004 6.433093 CCTGCCTGTAGTTGTTTAAATAGGTT 59.567 38.462 0.00 0.00 0.00 3.50
2961 3005 7.039993 CCTGCCTGTAGTTGTTTAAATAGGTTT 60.040 37.037 0.00 0.00 0.00 3.27
2962 3006 8.921353 TGCCTGTAGTTGTTTAAATAGGTTTA 57.079 30.769 0.00 0.00 0.00 2.01
2963 3007 9.352191 TGCCTGTAGTTGTTTAAATAGGTTTAA 57.648 29.630 0.00 0.00 37.86 1.52
2964 3008 9.836076 GCCTGTAGTTGTTTAAATAGGTTTAAG 57.164 33.333 0.00 0.00 40.01 1.85
2997 3041 8.940768 CTTAAAAAGGAACAAGATTTTGGTGA 57.059 30.769 0.57 0.00 38.66 4.02
3003 3047 5.598005 AGGAACAAGATTTTGGTGAATGTCA 59.402 36.000 0.57 0.00 38.66 3.58
3004 3048 5.922544 GGAACAAGATTTTGGTGAATGTCAG 59.077 40.000 0.57 0.00 38.66 3.51
3005 3049 6.461509 GGAACAAGATTTTGGTGAATGTCAGT 60.462 38.462 0.57 0.00 38.66 3.41
3006 3050 6.076981 ACAAGATTTTGGTGAATGTCAGTC 57.923 37.500 0.57 0.00 38.66 3.51
3007 3051 5.010012 ACAAGATTTTGGTGAATGTCAGTCC 59.990 40.000 0.57 0.00 38.66 3.85
3008 3052 4.082125 AGATTTTGGTGAATGTCAGTCCC 58.918 43.478 0.00 0.00 0.00 4.46
3009 3053 3.593442 TTTTGGTGAATGTCAGTCCCT 57.407 42.857 0.00 0.00 0.00 4.20
3010 3054 4.715534 TTTTGGTGAATGTCAGTCCCTA 57.284 40.909 0.00 0.00 0.00 3.53
3011 3055 4.715534 TTTGGTGAATGTCAGTCCCTAA 57.284 40.909 0.00 0.17 0.00 2.69
3015 3059 6.381498 TGGTGAATGTCAGTCCCTAATTAA 57.619 37.500 0.00 0.00 0.00 1.40
3016 3060 6.414732 TGGTGAATGTCAGTCCCTAATTAAG 58.585 40.000 0.00 0.00 0.00 1.85
3017 3061 6.214615 TGGTGAATGTCAGTCCCTAATTAAGA 59.785 38.462 0.00 0.00 0.00 2.10
3018 3062 7.092444 TGGTGAATGTCAGTCCCTAATTAAGAT 60.092 37.037 0.00 0.00 0.00 2.40
3019 3063 7.227512 GGTGAATGTCAGTCCCTAATTAAGATG 59.772 40.741 0.00 0.00 0.00 2.90
3021 3065 8.328758 TGAATGTCAGTCCCTAATTAAGATGTT 58.671 33.333 0.00 0.00 0.00 2.71
3022 3066 9.832445 GAATGTCAGTCCCTAATTAAGATGTTA 57.168 33.333 0.00 0.00 0.00 2.41
3024 3068 7.562135 TGTCAGTCCCTAATTAAGATGTTACC 58.438 38.462 0.00 0.00 0.00 2.85
3025 3069 6.700520 GTCAGTCCCTAATTAAGATGTTACCG 59.299 42.308 0.00 0.00 0.00 4.02
3026 3070 5.989777 CAGTCCCTAATTAAGATGTTACCGG 59.010 44.000 0.00 0.00 0.00 5.28
3027 3071 5.664457 AGTCCCTAATTAAGATGTTACCGGT 59.336 40.000 13.98 13.98 0.00 5.28
3028 3072 6.157471 AGTCCCTAATTAAGATGTTACCGGTT 59.843 38.462 15.04 0.00 0.00 4.44
3029 3073 6.825213 GTCCCTAATTAAGATGTTACCGGTTT 59.175 38.462 15.04 1.36 0.00 3.27
3030 3074 6.824704 TCCCTAATTAAGATGTTACCGGTTTG 59.175 38.462 15.04 0.00 0.00 2.93
3031 3075 6.600427 CCCTAATTAAGATGTTACCGGTTTGT 59.400 38.462 15.04 0.00 0.00 2.83
3042 3086 1.351017 ACCGGTTTGTGTCCTCATGAT 59.649 47.619 0.00 0.00 0.00 2.45
3045 3089 3.273434 CGGTTTGTGTCCTCATGATCAT 58.727 45.455 1.18 1.18 0.00 2.45
3070 3114 1.278985 TGATTCAGGCGGTCATCTTGT 59.721 47.619 0.00 0.00 0.00 3.16
3077 3121 1.514678 GCGGTCATCTTGTGTGGCAA 61.515 55.000 0.00 0.00 35.50 4.52
3126 3170 0.688087 GGAGGGGGATATAGGCCTCG 60.688 65.000 9.68 0.00 0.00 4.63
3135 3179 4.158209 GGGATATAGGCCTCGTAGAAGAAC 59.842 50.000 9.68 0.00 34.09 3.01
3177 3255 3.937814 TGTAGTTCTGATGTGCCGAATT 58.062 40.909 0.00 0.00 0.00 2.17
3178 3256 5.079689 TGTAGTTCTGATGTGCCGAATTA 57.920 39.130 0.00 0.00 0.00 1.40
3183 3261 3.270027 TCTGATGTGCCGAATTACCTTG 58.730 45.455 0.00 0.00 0.00 3.61
3188 3266 1.199097 GTGCCGAATTACCTTGGTGTG 59.801 52.381 2.03 0.00 0.00 3.82
3194 3272 1.372501 ATTACCTTGGTGTGGCCTCT 58.627 50.000 3.32 0.00 38.35 3.69
3198 3276 1.673665 CTTGGTGTGGCCTCTCTGC 60.674 63.158 3.32 0.00 38.35 4.26
3203 3281 0.250467 GTGTGGCCTCTCTGCTTGAA 60.250 55.000 3.32 0.00 0.00 2.69
3212 3290 1.134220 TCTCTGCTTGAACCGGTTTGT 60.134 47.619 23.22 0.00 0.00 2.83
3213 3291 1.264288 CTCTGCTTGAACCGGTTTGTC 59.736 52.381 23.22 9.82 0.00 3.18
3214 3292 0.041312 CTGCTTGAACCGGTTTGTCG 60.041 55.000 23.22 11.47 0.00 4.35
3216 3294 1.083015 CTTGAACCGGTTTGTCGCG 60.083 57.895 23.22 0.00 0.00 5.87
3220 3298 3.736732 AACCGGTTTGTCGCGGACA 62.737 57.895 15.86 6.79 41.09 4.02
3306 3384 7.953005 TTTTAATGCTCCTCCACATTAATCA 57.047 32.000 8.51 0.00 44.13 2.57
3312 3392 6.632909 TGCTCCTCCACATTAATCAAAAATG 58.367 36.000 0.00 0.00 39.68 2.32
3316 3396 5.581874 CCTCCACATTAATCAAAAATGGCAC 59.418 40.000 0.00 0.00 38.41 5.01
3328 3408 4.361253 TGGCACAAGAAGCTCGAC 57.639 55.556 0.00 0.00 31.92 4.20
3329 3409 1.748403 TGGCACAAGAAGCTCGACT 59.252 52.632 0.00 0.00 31.92 4.18
3330 3410 0.601046 TGGCACAAGAAGCTCGACTG 60.601 55.000 0.00 0.00 31.92 3.51
3334 3414 1.998315 CACAAGAAGCTCGACTGGATG 59.002 52.381 0.00 0.00 0.00 3.51
3342 3422 3.561143 AGCTCGACTGGATGATTAGAGT 58.439 45.455 0.00 0.00 0.00 3.24
3343 3423 3.317711 AGCTCGACTGGATGATTAGAGTG 59.682 47.826 0.00 0.00 0.00 3.51
3344 3424 3.316588 GCTCGACTGGATGATTAGAGTGA 59.683 47.826 0.00 0.00 0.00 3.41
3345 3425 4.022416 GCTCGACTGGATGATTAGAGTGAT 60.022 45.833 0.00 0.00 0.00 3.06
3346 3426 5.508825 GCTCGACTGGATGATTAGAGTGATT 60.509 44.000 0.00 0.00 0.00 2.57
3347 3427 6.471233 TCGACTGGATGATTAGAGTGATTT 57.529 37.500 0.00 0.00 0.00 2.17
3348 3428 6.878317 TCGACTGGATGATTAGAGTGATTTT 58.122 36.000 0.00 0.00 0.00 1.82
3349 3429 6.980978 TCGACTGGATGATTAGAGTGATTTTC 59.019 38.462 0.00 0.00 0.00 2.29
3350 3430 6.201806 CGACTGGATGATTAGAGTGATTTTCC 59.798 42.308 0.00 0.00 0.00 3.13
3351 3431 7.205515 ACTGGATGATTAGAGTGATTTTCCT 57.794 36.000 0.00 0.00 0.00 3.36
3352 3432 7.637511 ACTGGATGATTAGAGTGATTTTCCTT 58.362 34.615 0.00 0.00 0.00 3.36
3353 3433 7.772757 ACTGGATGATTAGAGTGATTTTCCTTC 59.227 37.037 0.00 0.00 0.00 3.46
3354 3434 7.632861 TGGATGATTAGAGTGATTTTCCTTCA 58.367 34.615 0.00 0.00 0.00 3.02
3355 3435 8.108999 TGGATGATTAGAGTGATTTTCCTTCAA 58.891 33.333 0.00 0.00 0.00 2.69
3356 3436 8.960591 GGATGATTAGAGTGATTTTCCTTCAAA 58.039 33.333 0.00 0.00 0.00 2.69
3357 3437 9.780413 GATGATTAGAGTGATTTTCCTTCAAAC 57.220 33.333 0.00 0.00 0.00 2.93
3358 3438 8.690203 TGATTAGAGTGATTTTCCTTCAAACA 57.310 30.769 0.00 0.00 0.00 2.83
3359 3439 9.130661 TGATTAGAGTGATTTTCCTTCAAACAA 57.869 29.630 0.00 0.00 0.00 2.83
3371 3451 9.528018 TTTTCCTTCAAACAATAATTGTCAGAC 57.472 29.630 0.00 0.00 44.59 3.51
3372 3452 7.815840 TCCTTCAAACAATAATTGTCAGACA 57.184 32.000 0.00 0.00 44.59 3.41
3373 3453 8.408043 TCCTTCAAACAATAATTGTCAGACAT 57.592 30.769 3.45 0.00 44.59 3.06
3374 3454 9.513906 TCCTTCAAACAATAATTGTCAGACATA 57.486 29.630 3.45 0.00 44.59 2.29
3406 3486 5.923733 TGAAACACAAAGTTGGTATTGGT 57.076 34.783 0.00 0.00 41.19 3.67
3407 3487 5.655488 TGAAACACAAAGTTGGTATTGGTG 58.345 37.500 0.00 0.00 41.19 4.17
3408 3488 3.726291 ACACAAAGTTGGTATTGGTGC 57.274 42.857 0.00 0.00 0.00 5.01
3409 3489 2.364002 ACACAAAGTTGGTATTGGTGCC 59.636 45.455 0.00 0.00 0.00 5.01
3410 3490 1.611491 ACAAAGTTGGTATTGGTGCCG 59.389 47.619 0.00 0.00 31.88 5.69
3411 3491 1.611491 CAAAGTTGGTATTGGTGCCGT 59.389 47.619 0.00 0.00 31.88 5.68
3412 3492 1.530323 AAGTTGGTATTGGTGCCGTC 58.470 50.000 0.00 0.00 31.88 4.79
3413 3493 0.672401 AGTTGGTATTGGTGCCGTCG 60.672 55.000 0.00 0.00 31.88 5.12
3414 3494 1.376166 TTGGTATTGGTGCCGTCGG 60.376 57.895 6.99 6.99 31.88 4.79
3415 3495 2.512974 GGTATTGGTGCCGTCGGG 60.513 66.667 14.38 0.00 0.00 5.14
3416 3496 2.266689 GTATTGGTGCCGTCGGGT 59.733 61.111 14.38 0.00 34.97 5.28
3417 3497 1.376295 GTATTGGTGCCGTCGGGTT 60.376 57.895 14.38 0.00 34.97 4.11
3418 3498 0.956902 GTATTGGTGCCGTCGGGTTT 60.957 55.000 14.38 0.00 34.97 3.27
3419 3499 0.250814 TATTGGTGCCGTCGGGTTTT 60.251 50.000 14.38 0.00 34.97 2.43
3420 3500 1.110518 ATTGGTGCCGTCGGGTTTTT 61.111 50.000 14.38 0.00 34.97 1.94
3421 3501 0.465097 TTGGTGCCGTCGGGTTTTTA 60.465 50.000 14.38 0.00 34.97 1.52
3422 3502 0.250814 TGGTGCCGTCGGGTTTTTAT 60.251 50.000 14.38 0.00 34.97 1.40
3423 3503 0.883153 GGTGCCGTCGGGTTTTTATT 59.117 50.000 14.38 0.00 34.97 1.40
3424 3504 1.270274 GGTGCCGTCGGGTTTTTATTT 59.730 47.619 14.38 0.00 34.97 1.40
3425 3505 2.321263 GTGCCGTCGGGTTTTTATTTG 58.679 47.619 14.38 0.00 34.97 2.32
3426 3506 2.030981 GTGCCGTCGGGTTTTTATTTGA 60.031 45.455 14.38 0.00 34.97 2.69
3427 3507 2.621998 TGCCGTCGGGTTTTTATTTGAA 59.378 40.909 14.38 0.00 34.97 2.69
3428 3508 3.067742 TGCCGTCGGGTTTTTATTTGAAA 59.932 39.130 14.38 0.00 34.97 2.69
3429 3509 3.671459 GCCGTCGGGTTTTTATTTGAAAG 59.329 43.478 14.38 0.00 34.97 2.62
3430 3510 4.793678 GCCGTCGGGTTTTTATTTGAAAGT 60.794 41.667 14.38 0.00 34.97 2.66
3431 3511 4.677832 CCGTCGGGTTTTTATTTGAAAGTG 59.322 41.667 2.34 0.00 0.00 3.16
3432 3512 5.275494 CGTCGGGTTTTTATTTGAAAGTGT 58.725 37.500 0.00 0.00 0.00 3.55
3433 3513 5.744819 CGTCGGGTTTTTATTTGAAAGTGTT 59.255 36.000 0.00 0.00 0.00 3.32
3434 3514 6.911511 CGTCGGGTTTTTATTTGAAAGTGTTA 59.088 34.615 0.00 0.00 0.00 2.41
3435 3515 7.592164 CGTCGGGTTTTTATTTGAAAGTGTTAT 59.408 33.333 0.00 0.00 0.00 1.89
3436 3516 9.251792 GTCGGGTTTTTATTTGAAAGTGTTATT 57.748 29.630 0.00 0.00 0.00 1.40
3437 3517 9.250624 TCGGGTTTTTATTTGAAAGTGTTATTG 57.749 29.630 0.00 0.00 0.00 1.90
3438 3518 9.036671 CGGGTTTTTATTTGAAAGTGTTATTGT 57.963 29.630 0.00 0.00 0.00 2.71
3449 3529 9.862371 TTGAAAGTGTTATTGTTGTATTGTTGT 57.138 25.926 0.00 0.00 0.00 3.32
3450 3530 9.295214 TGAAAGTGTTATTGTTGTATTGTTGTG 57.705 29.630 0.00 0.00 0.00 3.33
3451 3531 8.641499 AAAGTGTTATTGTTGTATTGTTGTGG 57.359 30.769 0.00 0.00 0.00 4.17
3452 3532 7.575414 AGTGTTATTGTTGTATTGTTGTGGA 57.425 32.000 0.00 0.00 0.00 4.02
3453 3533 8.177119 AGTGTTATTGTTGTATTGTTGTGGAT 57.823 30.769 0.00 0.00 0.00 3.41
3454 3534 9.290988 AGTGTTATTGTTGTATTGTTGTGGATA 57.709 29.630 0.00 0.00 0.00 2.59
3478 3558 3.791973 TTTTGCAAGGGTAGTGTTGTG 57.208 42.857 0.00 0.00 0.00 3.33
3479 3559 1.686355 TTGCAAGGGTAGTGTTGTGG 58.314 50.000 0.00 0.00 0.00 4.17
3480 3560 0.840617 TGCAAGGGTAGTGTTGTGGA 59.159 50.000 0.00 0.00 0.00 4.02
3481 3561 1.423541 TGCAAGGGTAGTGTTGTGGAT 59.576 47.619 0.00 0.00 0.00 3.41
3482 3562 2.158534 TGCAAGGGTAGTGTTGTGGATT 60.159 45.455 0.00 0.00 0.00 3.01
3483 3563 2.890945 GCAAGGGTAGTGTTGTGGATTT 59.109 45.455 0.00 0.00 0.00 2.17
3484 3564 3.305335 GCAAGGGTAGTGTTGTGGATTTG 60.305 47.826 0.00 0.00 0.00 2.32
3485 3565 3.876309 AGGGTAGTGTTGTGGATTTGT 57.124 42.857 0.00 0.00 0.00 2.83
3486 3566 4.986054 AGGGTAGTGTTGTGGATTTGTA 57.014 40.909 0.00 0.00 0.00 2.41
3487 3567 5.313280 AGGGTAGTGTTGTGGATTTGTAA 57.687 39.130 0.00 0.00 0.00 2.41
3488 3568 5.067954 AGGGTAGTGTTGTGGATTTGTAAC 58.932 41.667 0.00 0.00 0.00 2.50
3489 3569 5.067954 GGGTAGTGTTGTGGATTTGTAACT 58.932 41.667 0.00 0.00 0.00 2.24
3490 3570 5.048991 GGGTAGTGTTGTGGATTTGTAACTG 60.049 44.000 0.00 0.00 0.00 3.16
3491 3571 5.529800 GGTAGTGTTGTGGATTTGTAACTGT 59.470 40.000 0.00 0.00 0.00 3.55
3492 3572 5.499139 AGTGTTGTGGATTTGTAACTGTG 57.501 39.130 0.00 0.00 0.00 3.66
3493 3573 5.189928 AGTGTTGTGGATTTGTAACTGTGA 58.810 37.500 0.00 0.00 0.00 3.58
3494 3574 5.650266 AGTGTTGTGGATTTGTAACTGTGAA 59.350 36.000 0.00 0.00 0.00 3.18
3495 3575 5.741982 GTGTTGTGGATTTGTAACTGTGAAC 59.258 40.000 0.00 0.00 0.00 3.18
3496 3576 5.416013 TGTTGTGGATTTGTAACTGTGAACA 59.584 36.000 0.00 0.00 0.00 3.18
3497 3577 6.071896 TGTTGTGGATTTGTAACTGTGAACAA 60.072 34.615 5.22 5.22 33.92 2.83
3498 3578 6.516739 TGTGGATTTGTAACTGTGAACAAA 57.483 33.333 18.32 18.32 46.37 2.83
3499 3579 6.326375 TGTGGATTTGTAACTGTGAACAAAC 58.674 36.000 18.36 13.66 45.47 2.93
3500 3580 6.151985 TGTGGATTTGTAACTGTGAACAAACT 59.848 34.615 18.36 11.07 45.47 2.66
3501 3581 7.337184 TGTGGATTTGTAACTGTGAACAAACTA 59.663 33.333 18.36 10.92 45.47 2.24
3502 3582 8.349983 GTGGATTTGTAACTGTGAACAAACTAT 58.650 33.333 18.36 7.98 45.47 2.12
3503 3583 8.908903 TGGATTTGTAACTGTGAACAAACTATT 58.091 29.630 18.36 7.71 45.47 1.73
3504 3584 9.180678 GGATTTGTAACTGTGAACAAACTATTG 57.819 33.333 18.36 0.00 45.47 1.90
3528 3608 9.476202 TTGTACAAGAAGATATAATGGTCGATG 57.524 33.333 3.59 0.00 0.00 3.84
3529 3609 7.598869 TGTACAAGAAGATATAATGGTCGATGC 59.401 37.037 0.00 0.00 0.00 3.91
3530 3610 6.524734 ACAAGAAGATATAATGGTCGATGCA 58.475 36.000 0.00 0.00 0.00 3.96
3531 3611 7.164122 ACAAGAAGATATAATGGTCGATGCAT 58.836 34.615 0.00 0.00 0.00 3.96
3532 3612 8.314021 ACAAGAAGATATAATGGTCGATGCATA 58.686 33.333 0.00 0.00 0.00 3.14
3533 3613 9.322773 CAAGAAGATATAATGGTCGATGCATAT 57.677 33.333 0.00 0.00 0.00 1.78
3534 3614 8.883954 AGAAGATATAATGGTCGATGCATATG 57.116 34.615 0.00 0.00 0.00 1.78
3535 3615 8.481314 AGAAGATATAATGGTCGATGCATATGT 58.519 33.333 0.00 0.00 0.00 2.29
3536 3616 9.750125 GAAGATATAATGGTCGATGCATATGTA 57.250 33.333 0.00 0.00 0.00 2.29
3537 3617 9.755804 AAGATATAATGGTCGATGCATATGTAG 57.244 33.333 0.00 0.00 0.00 2.74
3538 3618 9.136323 AGATATAATGGTCGATGCATATGTAGA 57.864 33.333 0.00 0.00 0.00 2.59
3539 3619 9.920133 GATATAATGGTCGATGCATATGTAGAT 57.080 33.333 0.00 0.00 0.00 1.98
3540 3620 9.920133 ATATAATGGTCGATGCATATGTAGATC 57.080 33.333 0.00 3.45 0.00 2.75
3541 3621 4.096732 TGGTCGATGCATATGTAGATCG 57.903 45.455 19.49 19.49 39.22 3.69
3542 3622 2.854777 GGTCGATGCATATGTAGATCGC 59.145 50.000 20.21 16.51 38.05 4.58
3543 3623 2.527887 GTCGATGCATATGTAGATCGCG 59.472 50.000 20.21 0.00 38.05 5.87
3544 3624 2.418628 TCGATGCATATGTAGATCGCGA 59.581 45.455 13.09 13.09 38.05 5.87
3545 3625 3.119990 TCGATGCATATGTAGATCGCGAA 60.120 43.478 15.24 0.00 38.05 4.70
3546 3626 3.608073 CGATGCATATGTAGATCGCGAAA 59.392 43.478 15.24 0.00 32.13 3.46
3547 3627 4.089923 CGATGCATATGTAGATCGCGAAAA 59.910 41.667 15.24 0.00 32.13 2.29
3548 3628 4.972286 TGCATATGTAGATCGCGAAAAG 57.028 40.909 15.24 0.00 0.00 2.27
3549 3629 4.616953 TGCATATGTAGATCGCGAAAAGA 58.383 39.130 15.24 0.00 0.00 2.52
3550 3630 5.047188 TGCATATGTAGATCGCGAAAAGAA 58.953 37.500 15.24 0.00 0.00 2.52
3551 3631 5.522097 TGCATATGTAGATCGCGAAAAGAAA 59.478 36.000 15.24 0.00 0.00 2.52
3552 3632 6.036626 TGCATATGTAGATCGCGAAAAGAAAA 59.963 34.615 15.24 0.00 0.00 2.29
3553 3633 7.072030 GCATATGTAGATCGCGAAAAGAAAAT 58.928 34.615 15.24 4.12 0.00 1.82
3554 3634 8.221100 GCATATGTAGATCGCGAAAAGAAAATA 58.779 33.333 15.24 6.34 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.712205 GGATGTAAATTTATGGAATTGCTTGCT 59.288 33.333 0.31 0.00 37.98 3.91
8 9 7.495279 TGGATGTAAATTTATGGAATTGCTTGC 59.505 33.333 0.31 0.00 37.98 4.01
10 11 9.956640 TTTGGATGTAAATTTATGGAATTGCTT 57.043 25.926 0.31 0.00 37.98 3.91
17 18 9.956640 AGCAAAATTTGGATGTAAATTTATGGA 57.043 25.926 7.89 0.00 44.88 3.41
22 23 9.287373 ACATGAGCAAAATTTGGATGTAAATTT 57.713 25.926 7.89 0.00 46.56 1.82
23 24 8.851541 ACATGAGCAAAATTTGGATGTAAATT 57.148 26.923 7.89 0.00 40.84 1.82
24 25 8.851541 AACATGAGCAAAATTTGGATGTAAAT 57.148 26.923 7.89 0.00 31.87 1.40
25 26 8.674263 AAACATGAGCAAAATTTGGATGTAAA 57.326 26.923 7.89 0.00 0.00 2.01
26 27 8.674263 AAAACATGAGCAAAATTTGGATGTAA 57.326 26.923 7.89 0.00 0.00 2.41
27 28 8.674263 AAAAACATGAGCAAAATTTGGATGTA 57.326 26.923 7.89 0.00 0.00 2.29
28 29 7.571080 AAAAACATGAGCAAAATTTGGATGT 57.429 28.000 7.89 0.00 0.00 3.06
92 93 9.981460 ATTCACTTCTTCTTATGGAAACCTAAT 57.019 29.630 0.00 0.00 33.07 1.73
140 142 7.047891 TGGCTAGGAATACACACTTATTCTTG 58.952 38.462 0.00 0.00 38.19 3.02
148 150 3.441101 TCACTGGCTAGGAATACACACT 58.559 45.455 0.85 0.00 0.00 3.55
157 159 1.103803 GACACGATCACTGGCTAGGA 58.896 55.000 0.85 0.00 0.00 2.94
164 166 3.284336 TCGGGGACACGATCACTG 58.716 61.111 0.00 0.00 38.65 3.66
177 179 8.690203 ATCTAGACTATCTGAATATGATCGGG 57.310 38.462 0.00 0.00 0.00 5.14
188 190 8.809468 AGTGTACAACAATCTAGACTATCTGA 57.191 34.615 0.00 0.00 0.00 3.27
189 191 9.295214 CAAGTGTACAACAATCTAGACTATCTG 57.705 37.037 0.00 0.00 0.00 2.90
235 237 5.843019 TGAAGGAAAGAGAATGGTAAGGT 57.157 39.130 0.00 0.00 0.00 3.50
255 257 8.985315 AAGAAGAGTATATGGATGCAAAATGA 57.015 30.769 0.00 0.00 0.00 2.57
278 280 3.373830 TCATGGGAAAAGGGGCATAAAG 58.626 45.455 0.00 0.00 0.00 1.85
287 289 9.228949 CTCTTGATAGATTATCATGGGAAAAGG 57.771 37.037 6.15 0.00 44.06 3.11
327 329 2.470990 TGTGGTCTATGCATCAGGAGT 58.529 47.619 0.19 0.00 0.00 3.85
338 340 5.930569 CACATGATCGATGAATGTGGTCTAT 59.069 40.000 27.89 6.12 44.76 1.98
340 342 4.124970 CACATGATCGATGAATGTGGTCT 58.875 43.478 27.89 7.16 44.76 3.85
388 390 8.421701 CAGTTATAAATTTTTCGGTTTTGGACG 58.578 33.333 0.00 0.00 0.00 4.79
400 402 7.899172 AGCCTAACCCTCCAGTTATAAATTTTT 59.101 33.333 0.00 0.00 32.00 1.94
411 413 1.343176 GGTCTAGCCTAACCCTCCAGT 60.343 57.143 0.00 0.00 0.00 4.00
412 414 1.343075 TGGTCTAGCCTAACCCTCCAG 60.343 57.143 5.06 0.00 38.35 3.86
540 544 2.295253 AATCTTCGTGCGGACCTAAG 57.705 50.000 0.00 5.99 0.00 2.18
554 558 7.711772 TGATCATGACAACAAAGCAAAAATCTT 59.288 29.630 0.00 0.00 0.00 2.40
562 566 3.489355 AGGTGATCATGACAACAAAGCA 58.511 40.909 13.47 0.00 0.00 3.91
588 592 2.025321 TGTTTTGGAAGCTAGGGATCCC 60.025 50.000 24.59 24.59 32.01 3.85
626 630 8.632906 AGAGATGGGAAACATGATTATGAATC 57.367 34.615 4.20 2.14 40.72 2.52
639 647 4.222124 TGCTAAGGAAGAGATGGGAAAC 57.778 45.455 0.00 0.00 0.00 2.78
681 689 1.539388 TGCGCACCGAAAGAAAATGAT 59.461 42.857 5.66 0.00 0.00 2.45
694 702 0.028505 CAACATGAGCTATGCGCACC 59.971 55.000 14.90 3.95 41.64 5.01
701 709 4.645535 ACACACAGTTCAACATGAGCTAT 58.354 39.130 0.00 0.00 35.71 2.97
727 736 2.355108 GGCACATTACAGAGAGCAAGGA 60.355 50.000 0.00 0.00 0.00 3.36
770 779 6.606234 AGACATACTGACATACTACGTCTG 57.394 41.667 0.00 0.00 38.06 3.51
786 795 6.943981 TGAATTGCGCAAGTTATAGACATAC 58.056 36.000 28.62 10.06 41.68 2.39
787 796 7.546778 TTGAATTGCGCAAGTTATAGACATA 57.453 32.000 28.62 2.68 41.68 2.29
788 797 6.435430 TTGAATTGCGCAAGTTATAGACAT 57.565 33.333 28.62 4.19 41.68 3.06
789 798 5.871465 TTGAATTGCGCAAGTTATAGACA 57.129 34.783 28.62 15.50 41.68 3.41
790 799 6.414987 GGATTTGAATTGCGCAAGTTATAGAC 59.585 38.462 28.62 12.98 41.68 2.59
791 800 6.094742 TGGATTTGAATTGCGCAAGTTATAGA 59.905 34.615 28.62 11.77 41.68 1.98
792 801 6.264832 TGGATTTGAATTGCGCAAGTTATAG 58.735 36.000 28.62 0.00 41.68 1.31
793 802 6.201226 TGGATTTGAATTGCGCAAGTTATA 57.799 33.333 28.62 17.69 41.68 0.98
857 866 5.163854 CGTGCCTTTAAAATGGAGAGTGTAG 60.164 44.000 0.00 0.00 0.00 2.74
867 876 3.836949 ACATCAGCGTGCCTTTAAAATG 58.163 40.909 0.00 0.00 0.00 2.32
894 903 2.957402 AAAGTGCCTTCTCATGGACA 57.043 45.000 0.00 0.00 0.00 4.02
902 911 6.265196 TCATCAACAACAATAAAGTGCCTTCT 59.735 34.615 0.00 0.00 0.00 2.85
997 1019 1.067364 CTCAGCGACATCTCTCATGCT 59.933 52.381 0.00 0.00 0.00 3.79
1232 1257 3.831323 TCCACTTGATTCCAAAGAAGCA 58.169 40.909 0.00 0.00 46.27 3.91
1442 1467 1.408822 CCATGTACCTGCCTTCCTTCC 60.409 57.143 0.00 0.00 0.00 3.46
1503 1534 1.423921 ACGGGTTGGATCAAACTCCTT 59.576 47.619 12.74 3.73 36.20 3.36
1630 1661 0.533755 CCAGCAGCTATTCCGGGAAG 60.534 60.000 15.72 3.39 0.00 3.46
1646 1677 0.035458 AACTTTCCTCTGCGTCCCAG 59.965 55.000 0.00 0.00 43.17 4.45
1656 1687 2.030981 AGACAGACGACGAACTTTCCTC 60.031 50.000 0.00 0.00 0.00 3.71
1674 1708 0.670854 GGTTGCCGACTTGGAGAGAC 60.671 60.000 0.00 0.00 42.00 3.36
1692 1726 7.014808 TCCTTTGGTAGTAACAATTTCCTTTGG 59.985 37.037 0.43 0.00 0.00 3.28
1757 1794 2.664402 AGGGATTTCCATGGAATCCG 57.336 50.000 29.83 4.51 38.24 4.18
1947 1987 3.007940 TGGTGTCTCTTAGGTCCAACATG 59.992 47.826 0.00 0.00 0.00 3.21
2016 2056 6.873605 TCACACCATTGTCAACAAGTAGATAG 59.126 38.462 1.69 0.00 39.47 2.08
2040 2083 3.888930 TCAAAACTCCACCAGGAAATGTC 59.111 43.478 0.00 0.00 45.19 3.06
2209 2252 4.081406 TGGTATGCAATGAAACTCTTGCT 58.919 39.130 8.52 0.00 0.00 3.91
2226 2269 3.181471 CGAGGTTGCAGAGAGATTGGTAT 60.181 47.826 0.00 0.00 0.00 2.73
2230 2273 1.649664 CCGAGGTTGCAGAGAGATTG 58.350 55.000 0.00 0.00 0.00 2.67
2245 2288 2.357517 AAGGTTCTGCGTGCCGAG 60.358 61.111 0.00 0.00 0.00 4.63
2247 2290 3.777925 CGAAGGTTCTGCGTGCCG 61.778 66.667 0.00 0.00 0.00 5.69
2262 2305 4.441495 CCATGCCAGATAGTTACAGAACGA 60.441 45.833 0.00 0.00 40.76 3.85
2287 2330 1.073284 TGGTTCCAGTAAGAAGCCACC 59.927 52.381 1.47 0.00 42.31 4.61
2289 2332 2.290896 CCATGGTTCCAGTAAGAAGCCA 60.291 50.000 2.57 0.00 42.31 4.75
2319 2362 1.994507 GCTTCTCGAGGCTACGCAGA 61.995 60.000 13.56 0.00 0.00 4.26
2321 2364 0.746923 TAGCTTCTCGAGGCTACGCA 60.747 55.000 16.52 0.60 42.25 5.24
2355 2398 1.081892 CTGGAACATGAGGAACTGCG 58.918 55.000 0.00 0.00 36.36 5.18
2365 2408 0.322816 CCCACCCACTCTGGAACATG 60.323 60.000 0.00 0.00 40.96 3.21
2366 2409 0.772124 ACCCACCCACTCTGGAACAT 60.772 55.000 0.00 0.00 40.96 2.71
2438 2481 5.423015 AGGTTGCAAGTATACACAGATCTG 58.577 41.667 21.37 21.37 0.00 2.90
2456 2499 1.163554 GAGAAGAGCAGGCAAGGTTG 58.836 55.000 0.00 0.00 0.00 3.77
2458 2501 0.036022 GTGAGAAGAGCAGGCAAGGT 59.964 55.000 0.00 0.00 0.00 3.50
2463 2506 0.108233 CCAGAGTGAGAAGAGCAGGC 60.108 60.000 0.00 0.00 0.00 4.85
2468 2511 1.742831 CGAGGTCCAGAGTGAGAAGAG 59.257 57.143 0.00 0.00 0.00 2.85
2523 2566 0.972983 ACCCATCTCCTCCACTGACG 60.973 60.000 0.00 0.00 0.00 4.35
2562 2605 8.998377 TGCAAACATTAGCATCATATTATACGT 58.002 29.630 0.00 0.00 35.51 3.57
2644 2688 4.532126 AGTCATAGGTGTCACCAATGAGAA 59.468 41.667 24.02 0.00 41.95 2.87
2756 2800 0.252479 CTGCTCTCTCCATGGCAACT 59.748 55.000 6.96 0.00 34.21 3.16
2758 2802 1.077930 GCTGCTCTCTCCATGGCAA 60.078 57.895 6.96 0.00 34.21 4.52
2794 2838 5.805994 CGATTCACAAAGAGTAGGTTAGGAC 59.194 44.000 0.00 0.00 0.00 3.85
2801 2845 7.648510 GGTAGATTACGATTCACAAAGAGTAGG 59.351 40.741 0.00 0.00 0.00 3.18
2819 2863 5.222079 TGTGTGACTTTGCTGGTAGATTA 57.778 39.130 0.00 0.00 0.00 1.75
2821 2865 3.769739 TGTGTGACTTTGCTGGTAGAT 57.230 42.857 0.00 0.00 0.00 1.98
2836 2880 7.980742 TTACGTAGTTAGCATCTAATGTGTG 57.019 36.000 0.00 0.00 37.78 3.82
2837 2881 7.652105 CCATTACGTAGTTAGCATCTAATGTGT 59.348 37.037 0.00 0.00 37.78 3.72
2840 2884 7.865889 TGTCCATTACGTAGTTAGCATCTAATG 59.134 37.037 0.00 0.00 37.78 1.90
2842 2886 7.337480 TGTCCATTACGTAGTTAGCATCTAA 57.663 36.000 0.00 0.00 37.78 2.10
2844 2888 5.847111 TGTCCATTACGTAGTTAGCATCT 57.153 39.130 0.00 0.00 37.78 2.90
2859 2903 3.021695 CTGAAGTGGCATCATGTCCATT 58.978 45.455 4.37 0.00 34.47 3.16
2860 2904 2.651455 CTGAAGTGGCATCATGTCCAT 58.349 47.619 4.37 0.00 34.47 3.41
2869 2913 6.998673 GGAATTAGTATTACCTGAAGTGGCAT 59.001 38.462 0.00 0.00 0.00 4.40
2872 2916 6.895782 TGGGAATTAGTATTACCTGAAGTGG 58.104 40.000 1.15 0.00 44.11 4.00
2884 2928 8.716674 ATGCATGAAATCTTGGGAATTAGTAT 57.283 30.769 0.00 0.00 0.00 2.12
2885 2929 8.000709 AGATGCATGAAATCTTGGGAATTAGTA 58.999 33.333 2.46 0.00 29.94 1.82
2887 2931 7.230913 AGAGATGCATGAAATCTTGGGAATTAG 59.769 37.037 2.46 0.00 34.50 1.73
2902 2946 4.761227 TGCAACAACTAAAGAGATGCATGA 59.239 37.500 2.46 0.00 0.00 3.07
2903 2947 5.050644 TGCAACAACTAAAGAGATGCATG 57.949 39.130 2.46 0.00 0.00 4.06
2904 2948 5.416639 TGATGCAACAACTAAAGAGATGCAT 59.583 36.000 17.43 17.43 42.20 3.96
2905 2949 4.761227 TGATGCAACAACTAAAGAGATGCA 59.239 37.500 11.80 11.80 0.00 3.96
2906 2950 5.300969 TGATGCAACAACTAAAGAGATGC 57.699 39.130 0.00 0.00 0.00 3.91
2907 2951 9.844790 TTTTATGATGCAACAACTAAAGAGATG 57.155 29.630 0.00 0.00 0.00 2.90
2908 2952 9.846248 GTTTTATGATGCAACAACTAAAGAGAT 57.154 29.630 0.00 0.00 0.00 2.75
2909 2953 8.296713 GGTTTTATGATGCAACAACTAAAGAGA 58.703 33.333 0.00 0.00 0.00 3.10
2910 2954 7.542130 GGGTTTTATGATGCAACAACTAAAGAG 59.458 37.037 0.00 0.00 0.00 2.85
2911 2955 7.232534 AGGGTTTTATGATGCAACAACTAAAGA 59.767 33.333 0.00 0.00 0.00 2.52
2912 2956 7.329226 CAGGGTTTTATGATGCAACAACTAAAG 59.671 37.037 0.00 0.00 0.00 1.85
2914 2958 6.686630 CAGGGTTTTATGATGCAACAACTAA 58.313 36.000 0.00 0.00 0.00 2.24
2915 2959 5.336372 GCAGGGTTTTATGATGCAACAACTA 60.336 40.000 0.00 0.00 36.88 2.24
2917 2961 3.679502 GCAGGGTTTTATGATGCAACAAC 59.320 43.478 0.00 0.00 36.88 3.32
2926 2970 4.202524 ACAACTACAGGCAGGGTTTTATGA 60.203 41.667 0.00 0.00 0.00 2.15
2928 2972 4.382386 ACAACTACAGGCAGGGTTTTAT 57.618 40.909 0.00 0.00 0.00 1.40
2931 2975 2.748209 AACAACTACAGGCAGGGTTT 57.252 45.000 0.00 0.00 0.00 3.27
2989 3033 3.593442 AGGGACTGACATTCACCAAAA 57.407 42.857 0.00 0.00 37.18 2.44
2993 3037 6.650120 TCTTAATTAGGGACTGACATTCACC 58.350 40.000 0.00 0.00 41.52 4.02
2997 3041 9.614792 GTAACATCTTAATTAGGGACTGACATT 57.385 33.333 0.00 0.00 41.52 2.71
3003 3047 5.664457 ACCGGTAACATCTTAATTAGGGACT 59.336 40.000 4.49 0.00 46.37 3.85
3004 3048 5.922053 ACCGGTAACATCTTAATTAGGGAC 58.078 41.667 4.49 0.00 0.00 4.46
3005 3049 6.564557 AACCGGTAACATCTTAATTAGGGA 57.435 37.500 8.00 0.00 0.00 4.20
3006 3050 6.600427 ACAAACCGGTAACATCTTAATTAGGG 59.400 38.462 8.00 0.00 0.00 3.53
3007 3051 7.120138 ACACAAACCGGTAACATCTTAATTAGG 59.880 37.037 8.00 0.00 0.00 2.69
3008 3052 8.036273 ACACAAACCGGTAACATCTTAATTAG 57.964 34.615 8.00 0.00 0.00 1.73
3009 3053 7.119553 GGACACAAACCGGTAACATCTTAATTA 59.880 37.037 8.00 0.00 0.00 1.40
3010 3054 6.072342 GGACACAAACCGGTAACATCTTAATT 60.072 38.462 8.00 0.00 0.00 1.40
3011 3055 5.413523 GGACACAAACCGGTAACATCTTAAT 59.586 40.000 8.00 0.00 0.00 1.40
3015 3059 2.370849 AGGACACAAACCGGTAACATCT 59.629 45.455 8.00 0.00 0.00 2.90
3016 3060 2.740447 GAGGACACAAACCGGTAACATC 59.260 50.000 8.00 2.03 0.00 3.06
3017 3061 2.105134 TGAGGACACAAACCGGTAACAT 59.895 45.455 8.00 0.00 0.00 2.71
3018 3062 1.485480 TGAGGACACAAACCGGTAACA 59.515 47.619 8.00 0.00 0.00 2.41
3019 3063 2.243602 TGAGGACACAAACCGGTAAC 57.756 50.000 8.00 0.00 0.00 2.50
3021 3065 1.972075 TCATGAGGACACAAACCGGTA 59.028 47.619 8.00 0.00 0.00 4.02
3022 3066 0.762418 TCATGAGGACACAAACCGGT 59.238 50.000 0.00 0.00 0.00 5.28
3024 3068 2.698803 TGATCATGAGGACACAAACCG 58.301 47.619 0.09 0.00 0.00 4.44
3025 3069 4.096984 GGAATGATCATGAGGACACAAACC 59.903 45.833 9.46 1.95 0.00 3.27
3026 3070 4.096984 GGGAATGATCATGAGGACACAAAC 59.903 45.833 9.46 0.00 0.00 2.93
3027 3071 4.018141 AGGGAATGATCATGAGGACACAAA 60.018 41.667 9.46 0.00 0.00 2.83
3028 3072 3.524789 AGGGAATGATCATGAGGACACAA 59.475 43.478 9.46 0.00 0.00 3.33
3029 3073 3.117745 AGGGAATGATCATGAGGACACA 58.882 45.455 9.46 0.00 0.00 3.72
3030 3074 3.135348 TCAGGGAATGATCATGAGGACAC 59.865 47.826 9.46 0.54 31.12 3.67
3031 3075 3.387012 TCAGGGAATGATCATGAGGACA 58.613 45.455 9.46 2.02 31.12 4.02
3060 3104 1.609208 AGTTGCCACACAAGATGACC 58.391 50.000 0.00 0.00 39.50 4.02
3077 3121 3.243724 AGTTCTCTAACCTCTGGCAAGT 58.756 45.455 0.00 0.00 36.15 3.16
3083 3127 4.709397 AGACCATGAGTTCTCTAACCTCTG 59.291 45.833 0.00 0.00 36.15 3.35
3084 3128 4.709397 CAGACCATGAGTTCTCTAACCTCT 59.291 45.833 0.00 0.00 36.15 3.69
3126 3170 8.311650 TCAGTAAGCTTCAAATGTTCTTCTAC 57.688 34.615 0.00 0.00 0.00 2.59
3160 3238 3.270877 AGGTAATTCGGCACATCAGAAC 58.729 45.455 0.00 0.00 31.90 3.01
3177 3255 0.178903 AGAGAGGCCACACCAAGGTA 60.179 55.000 5.01 0.00 43.14 3.08
3178 3256 1.462238 AGAGAGGCCACACCAAGGT 60.462 57.895 5.01 0.00 43.14 3.50
3183 3261 1.673665 CAAGCAGAGAGGCCACACC 60.674 63.158 5.01 0.00 39.61 4.16
3188 3266 1.743252 CGGTTCAAGCAGAGAGGCC 60.743 63.158 0.00 0.00 0.00 5.19
3194 3272 1.305201 GACAAACCGGTTCAAGCAGA 58.695 50.000 22.53 0.00 0.00 4.26
3198 3276 1.083015 CGCGACAAACCGGTTCAAG 60.083 57.895 22.53 15.94 0.00 3.02
3203 3281 2.157305 TATGTCCGCGACAAACCGGT 62.157 55.000 8.23 0.00 45.96 5.28
3212 3290 3.687212 ACAACATGAAAATATGTCCGCGA 59.313 39.130 8.23 0.00 40.24 5.87
3213 3291 4.014847 ACAACATGAAAATATGTCCGCG 57.985 40.909 0.00 0.00 40.24 6.46
3214 3292 7.027161 AGTTTACAACATGAAAATATGTCCGC 58.973 34.615 0.00 0.00 40.24 5.54
3216 3294 9.559958 CAGAGTTTACAACATGAAAATATGTCC 57.440 33.333 0.00 0.00 40.24 4.02
3240 3318 6.801539 TTTGAGGAAGCATTGTACTAACAG 57.198 37.500 0.00 0.00 36.83 3.16
3241 3319 7.759489 AATTTGAGGAAGCATTGTACTAACA 57.241 32.000 0.00 0.00 0.00 2.41
3251 3329 6.534475 TTGAGCATTAATTTGAGGAAGCAT 57.466 33.333 0.00 0.00 0.00 3.79
3288 3366 6.351202 CCATTTTTGATTAATGTGGAGGAGCA 60.351 38.462 0.00 0.00 32.38 4.26
3299 3377 7.163441 AGCTTCTTGTGCCATTTTTGATTAAT 58.837 30.769 0.00 0.00 0.00 1.40
3300 3378 6.523840 AGCTTCTTGTGCCATTTTTGATTAA 58.476 32.000 0.00 0.00 0.00 1.40
3301 3379 6.100404 AGCTTCTTGTGCCATTTTTGATTA 57.900 33.333 0.00 0.00 0.00 1.75
3302 3380 4.964593 AGCTTCTTGTGCCATTTTTGATT 58.035 34.783 0.00 0.00 0.00 2.57
3303 3381 4.563061 GAGCTTCTTGTGCCATTTTTGAT 58.437 39.130 0.00 0.00 0.00 2.57
3304 3382 3.550639 CGAGCTTCTTGTGCCATTTTTGA 60.551 43.478 0.00 0.00 0.00 2.69
3305 3383 2.727798 CGAGCTTCTTGTGCCATTTTTG 59.272 45.455 0.00 0.00 0.00 2.44
3306 3384 2.622942 TCGAGCTTCTTGTGCCATTTTT 59.377 40.909 0.00 0.00 0.00 1.94
3312 3392 1.294659 CCAGTCGAGCTTCTTGTGCC 61.295 60.000 0.00 0.00 0.00 5.01
3316 3396 2.662006 TCATCCAGTCGAGCTTCTTG 57.338 50.000 0.00 0.00 0.00 3.02
3318 3398 4.211125 TCTAATCATCCAGTCGAGCTTCT 58.789 43.478 0.00 0.00 0.00 2.85
3328 3408 7.772292 TGAAGGAAAATCACTCTAATCATCCAG 59.228 37.037 0.00 0.00 0.00 3.86
3329 3409 7.632861 TGAAGGAAAATCACTCTAATCATCCA 58.367 34.615 0.00 0.00 0.00 3.41
3330 3410 8.511604 TTGAAGGAAAATCACTCTAATCATCC 57.488 34.615 0.00 0.00 0.00 3.51
3345 3425 9.528018 GTCTGACAATTATTGTTTGAAGGAAAA 57.472 29.630 12.13 0.00 45.52 2.29
3346 3426 8.690884 TGTCTGACAATTATTGTTTGAAGGAAA 58.309 29.630 12.13 0.00 45.52 3.13
3347 3427 8.231692 TGTCTGACAATTATTGTTTGAAGGAA 57.768 30.769 12.13 0.00 45.52 3.36
3348 3428 7.815840 TGTCTGACAATTATTGTTTGAAGGA 57.184 32.000 12.13 2.71 45.52 3.36
3380 3460 8.646900 ACCAATACCAACTTTGTGTTTCATAAT 58.353 29.630 0.00 0.00 36.63 1.28
3381 3461 7.923344 CACCAATACCAACTTTGTGTTTCATAA 59.077 33.333 0.00 0.00 36.63 1.90
3382 3462 7.429633 CACCAATACCAACTTTGTGTTTCATA 58.570 34.615 0.00 0.00 36.63 2.15
3383 3463 6.279882 CACCAATACCAACTTTGTGTTTCAT 58.720 36.000 0.00 0.00 36.63 2.57
3384 3464 5.655488 CACCAATACCAACTTTGTGTTTCA 58.345 37.500 0.00 0.00 36.63 2.69
3385 3465 4.506288 GCACCAATACCAACTTTGTGTTTC 59.494 41.667 0.00 0.00 36.63 2.78
3386 3466 4.438148 GCACCAATACCAACTTTGTGTTT 58.562 39.130 0.00 0.00 36.63 2.83
3387 3467 3.181470 GGCACCAATACCAACTTTGTGTT 60.181 43.478 0.00 0.00 39.92 3.32
3388 3468 2.364002 GGCACCAATACCAACTTTGTGT 59.636 45.455 0.00 0.00 0.00 3.72
3389 3469 2.606795 CGGCACCAATACCAACTTTGTG 60.607 50.000 0.00 0.00 0.00 3.33
3390 3470 1.611491 CGGCACCAATACCAACTTTGT 59.389 47.619 0.00 0.00 0.00 2.83
3391 3471 1.611491 ACGGCACCAATACCAACTTTG 59.389 47.619 0.00 0.00 0.00 2.77
3392 3472 1.883926 GACGGCACCAATACCAACTTT 59.116 47.619 0.00 0.00 0.00 2.66
3393 3473 1.530323 GACGGCACCAATACCAACTT 58.470 50.000 0.00 0.00 0.00 2.66
3394 3474 0.672401 CGACGGCACCAATACCAACT 60.672 55.000 0.00 0.00 0.00 3.16
3395 3475 1.641123 CCGACGGCACCAATACCAAC 61.641 60.000 0.00 0.00 0.00 3.77
3396 3476 1.376166 CCGACGGCACCAATACCAA 60.376 57.895 0.00 0.00 0.00 3.67
3397 3477 2.266372 CCGACGGCACCAATACCA 59.734 61.111 0.00 0.00 0.00 3.25
3398 3478 2.512974 CCCGACGGCACCAATACC 60.513 66.667 8.86 0.00 0.00 2.73
3399 3479 0.956902 AAACCCGACGGCACCAATAC 60.957 55.000 8.86 0.00 0.00 1.89
3400 3480 0.250814 AAAACCCGACGGCACCAATA 60.251 50.000 8.86 0.00 0.00 1.90
3401 3481 1.110518 AAAAACCCGACGGCACCAAT 61.111 50.000 8.86 0.00 0.00 3.16
3402 3482 0.465097 TAAAAACCCGACGGCACCAA 60.465 50.000 8.86 0.00 0.00 3.67
3403 3483 0.250814 ATAAAAACCCGACGGCACCA 60.251 50.000 8.86 0.00 0.00 4.17
3404 3484 0.883153 AATAAAAACCCGACGGCACC 59.117 50.000 8.86 0.00 0.00 5.01
3405 3485 2.030981 TCAAATAAAAACCCGACGGCAC 60.031 45.455 8.86 0.00 0.00 5.01
3406 3486 2.228059 TCAAATAAAAACCCGACGGCA 58.772 42.857 8.86 0.00 0.00 5.69
3407 3487 2.993449 TCAAATAAAAACCCGACGGC 57.007 45.000 8.86 0.00 0.00 5.68
3408 3488 4.677832 CACTTTCAAATAAAAACCCGACGG 59.322 41.667 6.99 6.99 0.00 4.79
3409 3489 5.275494 ACACTTTCAAATAAAAACCCGACG 58.725 37.500 0.00 0.00 0.00 5.12
3410 3490 8.806177 ATAACACTTTCAAATAAAAACCCGAC 57.194 30.769 0.00 0.00 0.00 4.79
3411 3491 9.250624 CAATAACACTTTCAAATAAAAACCCGA 57.749 29.630 0.00 0.00 0.00 5.14
3412 3492 9.036671 ACAATAACACTTTCAAATAAAAACCCG 57.963 29.630 0.00 0.00 0.00 5.28
3423 3503 9.862371 ACAACAATACAACAATAACACTTTCAA 57.138 25.926 0.00 0.00 0.00 2.69
3424 3504 9.295214 CACAACAATACAACAATAACACTTTCA 57.705 29.630 0.00 0.00 0.00 2.69
3425 3505 8.751335 CCACAACAATACAACAATAACACTTTC 58.249 33.333 0.00 0.00 0.00 2.62
3426 3506 8.470805 TCCACAACAATACAACAATAACACTTT 58.529 29.630 0.00 0.00 0.00 2.66
3427 3507 8.001881 TCCACAACAATACAACAATAACACTT 57.998 30.769 0.00 0.00 0.00 3.16
3428 3508 7.575414 TCCACAACAATACAACAATAACACT 57.425 32.000 0.00 0.00 0.00 3.55
3457 3537 3.118956 CCACAACACTACCCTTGCAAAAA 60.119 43.478 0.00 0.00 0.00 1.94
3458 3538 2.428890 CCACAACACTACCCTTGCAAAA 59.571 45.455 0.00 0.00 0.00 2.44
3459 3539 2.028130 CCACAACACTACCCTTGCAAA 58.972 47.619 0.00 0.00 0.00 3.68
3460 3540 1.213182 TCCACAACACTACCCTTGCAA 59.787 47.619 0.00 0.00 0.00 4.08
3461 3541 0.840617 TCCACAACACTACCCTTGCA 59.159 50.000 0.00 0.00 0.00 4.08
3462 3542 2.200373 ATCCACAACACTACCCTTGC 57.800 50.000 0.00 0.00 0.00 4.01
3463 3543 3.888930 ACAAATCCACAACACTACCCTTG 59.111 43.478 0.00 0.00 0.00 3.61
3464 3544 4.178956 ACAAATCCACAACACTACCCTT 57.821 40.909 0.00 0.00 0.00 3.95
3465 3545 3.876309 ACAAATCCACAACACTACCCT 57.124 42.857 0.00 0.00 0.00 4.34
3466 3546 5.048991 CAGTTACAAATCCACAACACTACCC 60.049 44.000 0.00 0.00 0.00 3.69
3467 3547 5.529800 ACAGTTACAAATCCACAACACTACC 59.470 40.000 0.00 0.00 0.00 3.18
3468 3548 6.259167 TCACAGTTACAAATCCACAACACTAC 59.741 38.462 0.00 0.00 0.00 2.73
3469 3549 6.350103 TCACAGTTACAAATCCACAACACTA 58.650 36.000 0.00 0.00 0.00 2.74
3470 3550 5.189928 TCACAGTTACAAATCCACAACACT 58.810 37.500 0.00 0.00 0.00 3.55
3471 3551 5.493133 TCACAGTTACAAATCCACAACAC 57.507 39.130 0.00 0.00 0.00 3.32
3472 3552 5.416013 TGTTCACAGTTACAAATCCACAACA 59.584 36.000 0.00 0.00 0.00 3.33
3473 3553 5.885881 TGTTCACAGTTACAAATCCACAAC 58.114 37.500 0.00 0.00 0.00 3.32
3474 3554 6.516739 TTGTTCACAGTTACAAATCCACAA 57.483 33.333 0.00 0.00 31.75 3.33
3475 3555 6.151985 AGTTTGTTCACAGTTACAAATCCACA 59.848 34.615 11.90 0.00 43.65 4.17
3476 3556 6.560711 AGTTTGTTCACAGTTACAAATCCAC 58.439 36.000 11.90 3.28 43.65 4.02
3477 3557 6.767524 AGTTTGTTCACAGTTACAAATCCA 57.232 33.333 11.90 0.00 43.65 3.41
3478 3558 9.180678 CAATAGTTTGTTCACAGTTACAAATCC 57.819 33.333 11.90 3.61 43.65 3.01
3479 3559 9.730420 ACAATAGTTTGTTCACAGTTACAAATC 57.270 29.630 11.90 7.65 43.57 2.17
3481 3561 9.991388 GTACAATAGTTTGTTCACAGTTACAAA 57.009 29.630 6.63 6.63 43.57 2.83
3482 3562 9.163899 TGTACAATAGTTTGTTCACAGTTACAA 57.836 29.630 0.00 0.00 43.57 2.41
3483 3563 8.719560 TGTACAATAGTTTGTTCACAGTTACA 57.280 30.769 0.00 0.00 43.57 2.41
3484 3564 9.646336 CTTGTACAATAGTTTGTTCACAGTTAC 57.354 33.333 9.13 0.00 43.57 2.50
3485 3565 9.602568 TCTTGTACAATAGTTTGTTCACAGTTA 57.397 29.630 9.13 0.00 43.57 2.24
3486 3566 8.500753 TCTTGTACAATAGTTTGTTCACAGTT 57.499 30.769 9.13 0.00 43.57 3.16
3487 3567 8.500753 TTCTTGTACAATAGTTTGTTCACAGT 57.499 30.769 9.13 0.00 43.57 3.55
3488 3568 8.826710 TCTTCTTGTACAATAGTTTGTTCACAG 58.173 33.333 9.13 0.00 43.57 3.66
3489 3569 8.725405 TCTTCTTGTACAATAGTTTGTTCACA 57.275 30.769 9.13 0.00 43.57 3.58
3502 3582 9.476202 CATCGACCATTATATCTTCTTGTACAA 57.524 33.333 8.28 8.28 0.00 2.41
3503 3583 7.598869 GCATCGACCATTATATCTTCTTGTACA 59.401 37.037 0.00 0.00 0.00 2.90
3504 3584 7.598869 TGCATCGACCATTATATCTTCTTGTAC 59.401 37.037 0.00 0.00 0.00 2.90
3505 3585 7.666623 TGCATCGACCATTATATCTTCTTGTA 58.333 34.615 0.00 0.00 0.00 2.41
3506 3586 6.524734 TGCATCGACCATTATATCTTCTTGT 58.475 36.000 0.00 0.00 0.00 3.16
3507 3587 7.606858 ATGCATCGACCATTATATCTTCTTG 57.393 36.000 0.00 0.00 0.00 3.02
3508 3588 9.322773 CATATGCATCGACCATTATATCTTCTT 57.677 33.333 0.19 0.00 0.00 2.52
3509 3589 8.481314 ACATATGCATCGACCATTATATCTTCT 58.519 33.333 0.19 0.00 0.00 2.85
3510 3590 8.654230 ACATATGCATCGACCATTATATCTTC 57.346 34.615 0.19 0.00 0.00 2.87
3511 3591 9.755804 CTACATATGCATCGACCATTATATCTT 57.244 33.333 0.19 0.00 0.00 2.40
3512 3592 9.136323 TCTACATATGCATCGACCATTATATCT 57.864 33.333 0.19 0.00 0.00 1.98
3513 3593 9.920133 ATCTACATATGCATCGACCATTATATC 57.080 33.333 0.19 0.00 0.00 1.63
3514 3594 9.920133 GATCTACATATGCATCGACCATTATAT 57.080 33.333 0.19 0.00 0.00 0.86
3515 3595 8.076178 CGATCTACATATGCATCGACCATTATA 58.924 37.037 20.02 0.00 40.48 0.98
3516 3596 6.920210 CGATCTACATATGCATCGACCATTAT 59.080 38.462 20.02 0.00 40.48 1.28
3517 3597 6.265577 CGATCTACATATGCATCGACCATTA 58.734 40.000 20.02 0.00 40.48 1.90
3518 3598 5.105063 CGATCTACATATGCATCGACCATT 58.895 41.667 20.02 0.00 40.48 3.16
3519 3599 4.676546 CGATCTACATATGCATCGACCAT 58.323 43.478 20.02 5.80 40.48 3.55
3520 3600 3.673323 GCGATCTACATATGCATCGACCA 60.673 47.826 25.30 0.00 40.48 4.02
3521 3601 2.854777 GCGATCTACATATGCATCGACC 59.145 50.000 25.30 12.18 40.48 4.79
3522 3602 2.527887 CGCGATCTACATATGCATCGAC 59.472 50.000 25.30 18.12 40.48 4.20
3523 3603 2.418628 TCGCGATCTACATATGCATCGA 59.581 45.455 25.30 13.35 40.48 3.59
3524 3604 2.785679 TCGCGATCTACATATGCATCG 58.214 47.619 20.23 20.23 40.89 3.84
3525 3605 5.346011 TCTTTTCGCGATCTACATATGCATC 59.654 40.000 10.88 1.49 0.00 3.91
3526 3606 5.230182 TCTTTTCGCGATCTACATATGCAT 58.770 37.500 10.88 3.79 0.00 3.96
3527 3607 4.616953 TCTTTTCGCGATCTACATATGCA 58.383 39.130 10.88 0.00 0.00 3.96
3528 3608 5.576337 TTCTTTTCGCGATCTACATATGC 57.424 39.130 10.88 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.