Multiple sequence alignment - TraesCS6D01G398600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G398600 chr6D 100.000 2861 0 0 1 2861 469753009 469750149 0.000000e+00 5284.0
1 TraesCS6D01G398600 chr6D 94.470 434 19 3 4 435 459359554 459359124 0.000000e+00 664.0
2 TraesCS6D01G398600 chr6D 94.266 436 18 5 1 434 459360236 459359806 0.000000e+00 660.0
3 TraesCS6D01G398600 chr6D 79.210 861 160 14 980 1826 469991161 469990306 5.310000e-162 580.0
4 TraesCS6D01G398600 chr6D 79.646 113 17 6 2187 2294 428067558 428067669 3.060000e-10 76.8
5 TraesCS6D01G398600 chrUn 89.519 1498 122 14 435 1917 75098276 75096799 0.000000e+00 1864.0
6 TraesCS6D01G398600 chrUn 99.042 522 5 0 2340 2861 70285841 70286362 0.000000e+00 937.0
7 TraesCS6D01G398600 chrUn 82.425 973 149 14 779 1737 331544275 331545239 0.000000e+00 830.0
8 TraesCS6D01G398600 chrUn 81.149 870 139 14 882 1737 62146544 62147402 0.000000e+00 675.0
9 TraesCS6D01G398600 chrUn 81.818 374 43 13 1946 2298 28288025 28288394 1.000000e-74 291.0
10 TraesCS6D01G398600 chrUn 80.083 241 37 9 1923 2156 182300146 182300382 4.900000e-38 169.0
11 TraesCS6D01G398600 chrUn 74.586 362 60 24 1953 2300 62148294 62148637 2.310000e-26 130.0
12 TraesCS6D01G398600 chr7D 99.617 522 2 0 2340 2861 534471010 534471531 0.000000e+00 953.0
13 TraesCS6D01G398600 chr7D 94.725 436 17 4 1 434 10153066 10152635 0.000000e+00 673.0
14 TraesCS6D01G398600 chr7D 93.822 437 21 4 1 434 630298223 630298656 0.000000e+00 652.0
15 TraesCS6D01G398600 chr7D 73.016 378 69 30 1946 2298 58791262 58790893 5.040000e-18 102.0
16 TraesCS6D01G398600 chr2D 99.425 522 3 0 2340 2861 74151500 74152021 0.000000e+00 948.0
17 TraesCS6D01G398600 chr2D 99.234 522 4 0 2340 2861 351053771 351053250 0.000000e+00 942.0
18 TraesCS6D01G398600 chr2D 93.878 441 20 5 1 438 615739060 615739496 0.000000e+00 658.0
19 TraesCS6D01G398600 chr7A 98.677 529 6 1 2334 2861 232384014 232384542 0.000000e+00 937.0
20 TraesCS6D01G398600 chr6A 99.042 522 5 0 2340 2861 410901515 410902036 0.000000e+00 937.0
21 TraesCS6D01G398600 chr6A 81.008 853 145 12 998 1836 614697828 614696979 0.000000e+00 662.0
22 TraesCS6D01G398600 chr6A 79.680 812 145 11 981 1773 614678409 614677599 4.140000e-158 568.0
23 TraesCS6D01G398600 chr6A 75.926 270 37 20 1994 2244 370675863 370675603 2.330000e-21 113.0
24 TraesCS6D01G398600 chr3A 99.042 522 5 0 2340 2861 91017007 91016486 0.000000e+00 937.0
25 TraesCS6D01G398600 chr3A 92.105 38 3 0 1604 1641 47064179 47064216 1.000000e-03 54.7
26 TraesCS6D01G398600 chr4D 98.851 522 6 0 2340 2861 83146861 83146340 0.000000e+00 931.0
27 TraesCS6D01G398600 chr4D 98.131 535 7 3 2327 2861 48073637 48073106 0.000000e+00 929.0
28 TraesCS6D01G398600 chr4D 77.946 331 45 24 1985 2294 299802058 299801735 6.300000e-42 182.0
29 TraesCS6D01G398600 chr1D 94.508 437 17 5 1 434 1237810 1237378 0.000000e+00 667.0
30 TraesCS6D01G398600 chr1D 74.054 370 65 24 1948 2294 417083200 417083561 3.870000e-24 122.0
31 TraesCS6D01G398600 chr3D 94.050 437 21 3 1 435 568985628 568986061 0.000000e+00 658.0
32 TraesCS6D01G398600 chr3D 93.779 434 21 4 3 434 28551387 28550958 0.000000e+00 647.0
33 TraesCS6D01G398600 chr3D 92.105 38 3 0 1604 1641 36836249 36836286 1.000000e-03 54.7
34 TraesCS6D01G398600 chr5D 93.578 436 23 3 1 434 42127588 42128020 0.000000e+00 645.0
35 TraesCS6D01G398600 chr6B 79.705 882 161 12 969 1836 715971092 715970215 3.130000e-174 621.0
36 TraesCS6D01G398600 chr6B 80.881 795 143 5 998 1783 715980265 715979471 4.050000e-173 617.0
37 TraesCS6D01G398600 chr6B 78.903 839 161 12 1000 1827 715846114 715845281 3.220000e-154 555.0
38 TraesCS6D01G398600 chr6B 80.176 227 37 7 1923 2145 372981526 372981304 2.280000e-36 163.0
39 TraesCS6D01G398600 chr7B 77.411 394 63 16 1923 2294 233892086 233892475 8.030000e-51 211.0
40 TraesCS6D01G398600 chr7B 76.904 394 65 18 1923 2294 249283530 249283919 1.740000e-47 200.0
41 TraesCS6D01G398600 chr7B 82.870 216 24 11 1948 2156 383854668 383854877 6.300000e-42 182.0
42 TraesCS6D01G398600 chr2A 77.387 398 62 19 1919 2294 457894418 457894027 8.030000e-51 211.0
43 TraesCS6D01G398600 chr4B 77.099 393 64 18 1928 2298 252159421 252159809 1.340000e-48 204.0
44 TraesCS6D01G398600 chr4B 75.949 395 67 19 1923 2294 199100778 199100389 8.150000e-41 178.0
45 TraesCS6D01G398600 chr5B 77.165 381 56 22 1938 2294 94946997 94946624 2.910000e-45 193.0
46 TraesCS6D01G398600 chr4A 76.190 210 31 12 2040 2232 602621950 602621743 3.040000e-15 93.5
47 TraesCS6D01G398600 chr1A 79.104 134 22 4 2166 2294 191125902 191125770 1.410000e-13 87.9
48 TraesCS6D01G398600 chr3B 78.351 97 16 5 2203 2294 316751034 316750938 1.110000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G398600 chr6D 469750149 469753009 2860 True 5284.0 5284 100.0000 1 2861 1 chr6D.!!$R1 2860
1 TraesCS6D01G398600 chr6D 459359124 459360236 1112 True 662.0 664 94.3680 1 435 2 chr6D.!!$R3 434
2 TraesCS6D01G398600 chr6D 469990306 469991161 855 True 580.0 580 79.2100 980 1826 1 chr6D.!!$R2 846
3 TraesCS6D01G398600 chrUn 75096799 75098276 1477 True 1864.0 1864 89.5190 435 1917 1 chrUn.!!$R1 1482
4 TraesCS6D01G398600 chrUn 70285841 70286362 521 False 937.0 937 99.0420 2340 2861 1 chrUn.!!$F2 521
5 TraesCS6D01G398600 chrUn 331544275 331545239 964 False 830.0 830 82.4250 779 1737 1 chrUn.!!$F4 958
6 TraesCS6D01G398600 chrUn 62146544 62148637 2093 False 402.5 675 77.8675 882 2300 2 chrUn.!!$F5 1418
7 TraesCS6D01G398600 chr7D 534471010 534471531 521 False 953.0 953 99.6170 2340 2861 1 chr7D.!!$F1 521
8 TraesCS6D01G398600 chr2D 74151500 74152021 521 False 948.0 948 99.4250 2340 2861 1 chr2D.!!$F1 521
9 TraesCS6D01G398600 chr2D 351053250 351053771 521 True 942.0 942 99.2340 2340 2861 1 chr2D.!!$R1 521
10 TraesCS6D01G398600 chr7A 232384014 232384542 528 False 937.0 937 98.6770 2334 2861 1 chr7A.!!$F1 527
11 TraesCS6D01G398600 chr6A 410901515 410902036 521 False 937.0 937 99.0420 2340 2861 1 chr6A.!!$F1 521
12 TraesCS6D01G398600 chr6A 614696979 614697828 849 True 662.0 662 81.0080 998 1836 1 chr6A.!!$R3 838
13 TraesCS6D01G398600 chr6A 614677599 614678409 810 True 568.0 568 79.6800 981 1773 1 chr6A.!!$R2 792
14 TraesCS6D01G398600 chr3A 91016486 91017007 521 True 937.0 937 99.0420 2340 2861 1 chr3A.!!$R1 521
15 TraesCS6D01G398600 chr4D 83146340 83146861 521 True 931.0 931 98.8510 2340 2861 1 chr4D.!!$R2 521
16 TraesCS6D01G398600 chr4D 48073106 48073637 531 True 929.0 929 98.1310 2327 2861 1 chr4D.!!$R1 534
17 TraesCS6D01G398600 chr6B 715970215 715971092 877 True 621.0 621 79.7050 969 1836 1 chr6B.!!$R3 867
18 TraesCS6D01G398600 chr6B 715979471 715980265 794 True 617.0 617 80.8810 998 1783 1 chr6B.!!$R4 785
19 TraesCS6D01G398600 chr6B 715845281 715846114 833 True 555.0 555 78.9030 1000 1827 1 chr6B.!!$R2 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.035739 GTGCCTAGAACCGGGACAAA 59.964 55.0 6.32 0.0 41.87 2.83 F
776 782 0.176219 ACTGTTTTCGACGTGGACCA 59.824 50.0 0.00 0.0 0.00 4.02 F
848 854 0.321346 TCTGCTTCGATCTTGTGGCA 59.679 50.0 0.00 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1098 0.657368 CACACCTTTGAAACGCTCGC 60.657 55.0 0.00 0.00 0.00 5.03 R
1659 2387 0.878416 CGAAGGCCCGACATTCAAAA 59.122 50.0 0.00 0.00 0.00 2.44 R
2275 3684 0.940452 TATCCTACCACCCGGGGTAA 59.060 55.0 27.92 6.65 42.63 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.179579 GCGTGGCTCGGGCATTTC 62.180 66.667 10.74 0.00 40.92 2.17
18 19 2.745884 CGTGGCTCGGGCATTTCA 60.746 61.111 10.74 0.00 40.92 2.69
19 20 2.114670 CGTGGCTCGGGCATTTCAT 61.115 57.895 10.74 0.00 40.92 2.57
20 21 1.656818 CGTGGCTCGGGCATTTCATT 61.657 55.000 10.74 0.00 40.92 2.57
21 22 0.179129 GTGGCTCGGGCATTTCATTG 60.179 55.000 10.74 0.00 40.92 2.82
22 23 0.323269 TGGCTCGGGCATTTCATTGA 60.323 50.000 10.74 0.00 40.87 2.57
23 24 0.817013 GGCTCGGGCATTTCATTGAA 59.183 50.000 10.74 0.00 40.87 2.69
24 25 1.469767 GGCTCGGGCATTTCATTGAAC 60.470 52.381 10.74 0.00 40.87 3.18
25 26 1.202114 GCTCGGGCATTTCATTGAACA 59.798 47.619 0.00 0.00 38.54 3.18
26 27 2.867429 CTCGGGCATTTCATTGAACAC 58.133 47.619 0.00 0.00 0.00 3.32
27 28 1.543802 TCGGGCATTTCATTGAACACC 59.456 47.619 0.00 1.15 0.00 4.16
28 29 1.545582 CGGGCATTTCATTGAACACCT 59.454 47.619 0.00 0.00 0.00 4.00
29 30 2.415893 CGGGCATTTCATTGAACACCTC 60.416 50.000 0.00 0.00 0.00 3.85
30 31 2.562298 GGGCATTTCATTGAACACCTCA 59.438 45.455 0.00 0.00 0.00 3.86
31 32 3.196254 GGGCATTTCATTGAACACCTCAT 59.804 43.478 0.00 0.00 32.78 2.90
32 33 4.178540 GGCATTTCATTGAACACCTCATG 58.821 43.478 0.00 0.80 32.78 3.07
33 34 4.322198 GGCATTTCATTGAACACCTCATGT 60.322 41.667 0.00 0.00 46.42 3.21
37 38 3.423749 TCATTGAACACCTCATGTGCAT 58.576 40.909 0.00 0.00 46.94 3.96
38 39 4.587891 TCATTGAACACCTCATGTGCATA 58.412 39.130 0.00 0.00 46.94 3.14
39 40 4.637091 TCATTGAACACCTCATGTGCATAG 59.363 41.667 0.00 0.00 46.94 2.23
40 41 3.346315 TTGAACACCTCATGTGCATAGG 58.654 45.455 0.00 0.00 46.94 2.57
41 42 3.008923 TTGAACACCTCATGTGCATAGGA 59.991 43.478 12.62 6.04 46.94 2.94
42 43 4.864219 TTGAACACCTCATGTGCATAGGAG 60.864 45.833 17.09 17.09 46.94 3.69
43 44 7.832726 TTGAACACCTCATGTGCATAGGAGG 62.833 48.000 34.03 34.03 46.94 4.30
45 46 2.251409 CCTCATGTGCATAGGAGGTG 57.749 55.000 29.58 10.75 41.58 4.00
46 47 1.764723 CCTCATGTGCATAGGAGGTGA 59.235 52.381 29.58 9.38 41.58 4.02
47 48 2.224233 CCTCATGTGCATAGGAGGTGAG 60.224 54.545 29.58 17.28 41.58 3.51
48 49 1.139654 TCATGTGCATAGGAGGTGAGC 59.860 52.381 0.00 0.00 0.00 4.26
49 50 1.140452 CATGTGCATAGGAGGTGAGCT 59.860 52.381 0.00 0.00 0.00 4.09
50 51 2.159179 TGTGCATAGGAGGTGAGCTA 57.841 50.000 0.00 0.00 0.00 3.32
51 52 1.757118 TGTGCATAGGAGGTGAGCTAC 59.243 52.381 0.00 0.00 0.00 3.58
52 53 2.035632 GTGCATAGGAGGTGAGCTACT 58.964 52.381 0.54 0.54 0.00 2.57
53 54 3.223435 GTGCATAGGAGGTGAGCTACTA 58.777 50.000 6.01 6.01 0.00 1.82
54 55 3.254657 GTGCATAGGAGGTGAGCTACTAG 59.745 52.174 9.71 3.39 0.00 2.57
55 56 3.138468 TGCATAGGAGGTGAGCTACTAGA 59.862 47.826 9.71 0.00 0.00 2.43
56 57 3.756434 GCATAGGAGGTGAGCTACTAGAG 59.244 52.174 9.71 5.87 0.00 2.43
74 75 4.463788 CACCCAATGCCCTCCCCC 62.464 72.222 0.00 0.00 0.00 5.40
75 76 4.720443 ACCCAATGCCCTCCCCCT 62.720 66.667 0.00 0.00 0.00 4.79
76 77 3.825623 CCCAATGCCCTCCCCCTC 61.826 72.222 0.00 0.00 0.00 4.30
77 78 4.195334 CCAATGCCCTCCCCCTCG 62.195 72.222 0.00 0.00 0.00 4.63
78 79 4.883354 CAATGCCCTCCCCCTCGC 62.883 72.222 0.00 0.00 0.00 5.03
91 92 3.669344 CTCGCCGGCCAGCAAAAA 61.669 61.111 23.46 0.00 0.00 1.94
115 116 3.963222 CACTGTGGAGTGCTCTGC 58.037 61.111 0.00 0.00 43.24 4.26
116 117 1.370437 CACTGTGGAGTGCTCTGCT 59.630 57.895 8.78 0.00 43.24 4.24
117 118 0.949588 CACTGTGGAGTGCTCTGCTG 60.950 60.000 8.78 2.22 43.24 4.41
118 119 2.031616 TGTGGAGTGCTCTGCTGC 59.968 61.111 8.78 0.00 33.13 5.25
119 120 3.117171 GTGGAGTGCTCTGCTGCG 61.117 66.667 8.78 0.00 35.36 5.18
120 121 4.383861 TGGAGTGCTCTGCTGCGG 62.384 66.667 8.78 0.95 35.36 5.69
131 132 4.626081 GCTGCGGCGATGGGGTAT 62.626 66.667 12.98 0.00 0.00 2.73
132 133 3.056458 CTGCGGCGATGGGGTATA 58.944 61.111 12.98 0.00 0.00 1.47
133 134 1.596934 CTGCGGCGATGGGGTATAT 59.403 57.895 12.98 0.00 0.00 0.86
134 135 0.821517 CTGCGGCGATGGGGTATATA 59.178 55.000 12.98 0.00 0.00 0.86
135 136 1.412710 CTGCGGCGATGGGGTATATAT 59.587 52.381 12.98 0.00 0.00 0.86
136 137 2.626266 CTGCGGCGATGGGGTATATATA 59.374 50.000 12.98 0.00 0.00 0.86
137 138 2.626266 TGCGGCGATGGGGTATATATAG 59.374 50.000 12.98 0.00 0.00 1.31
138 139 2.029290 GCGGCGATGGGGTATATATAGG 60.029 54.545 12.98 0.00 0.00 2.57
139 140 2.029290 CGGCGATGGGGTATATATAGGC 60.029 54.545 0.00 0.00 0.00 3.93
140 141 2.969950 GGCGATGGGGTATATATAGGCA 59.030 50.000 0.00 0.00 0.00 4.75
141 142 3.389983 GGCGATGGGGTATATATAGGCAA 59.610 47.826 0.00 0.00 0.00 4.52
142 143 4.377897 GCGATGGGGTATATATAGGCAAC 58.622 47.826 0.00 0.00 0.00 4.17
155 156 1.883021 GGCAACTCATTTGTCCCGG 59.117 57.895 0.00 0.00 37.54 5.73
156 157 0.893727 GGCAACTCATTTGTCCCGGT 60.894 55.000 0.00 0.00 37.54 5.28
157 158 0.958822 GCAACTCATTTGTCCCGGTT 59.041 50.000 0.00 0.00 37.54 4.44
158 159 1.339929 GCAACTCATTTGTCCCGGTTT 59.660 47.619 0.00 0.00 37.54 3.27
159 160 2.862140 GCAACTCATTTGTCCCGGTTTG 60.862 50.000 0.00 0.00 37.54 2.93
160 161 2.358322 ACTCATTTGTCCCGGTTTGT 57.642 45.000 0.00 0.00 0.00 2.83
161 162 1.953686 ACTCATTTGTCCCGGTTTGTG 59.046 47.619 0.00 0.00 0.00 3.33
162 163 1.269448 CTCATTTGTCCCGGTTTGTGG 59.731 52.381 0.00 0.00 0.00 4.17
163 164 1.036707 CATTTGTCCCGGTTTGTGGT 58.963 50.000 0.00 0.00 0.00 4.16
164 165 2.158652 TCATTTGTCCCGGTTTGTGGTA 60.159 45.455 0.00 0.00 0.00 3.25
165 166 2.660670 TTTGTCCCGGTTTGTGGTAT 57.339 45.000 0.00 0.00 0.00 2.73
166 167 3.784511 TTTGTCCCGGTTTGTGGTATA 57.215 42.857 0.00 0.00 0.00 1.47
167 168 3.784511 TTGTCCCGGTTTGTGGTATAA 57.215 42.857 0.00 0.00 0.00 0.98
168 169 3.784511 TGTCCCGGTTTGTGGTATAAA 57.215 42.857 0.00 0.00 0.00 1.40
169 170 3.410508 TGTCCCGGTTTGTGGTATAAAC 58.589 45.455 0.00 0.00 37.31 2.01
182 183 3.470709 GGTATAAACCGGGACTAAAGCC 58.529 50.000 6.32 0.00 35.62 4.35
183 184 2.723322 ATAAACCGGGACTAAAGCCC 57.277 50.000 6.32 0.00 42.41 5.19
184 185 1.360185 TAAACCGGGACTAAAGCCCA 58.640 50.000 6.32 0.00 46.36 5.36
185 186 0.037734 AAACCGGGACTAAAGCCCAG 59.962 55.000 6.32 0.00 46.36 4.45
186 187 2.124695 CCGGGACTAAAGCCCAGC 60.125 66.667 0.00 0.00 46.36 4.85
187 188 2.668632 CGGGACTAAAGCCCAGCA 59.331 61.111 0.00 0.00 46.36 4.41
188 189 1.224592 CGGGACTAAAGCCCAGCAT 59.775 57.895 0.00 0.00 46.36 3.79
189 190 0.394352 CGGGACTAAAGCCCAGCATT 60.394 55.000 0.00 0.00 46.36 3.56
190 191 1.393603 GGGACTAAAGCCCAGCATTC 58.606 55.000 0.00 0.00 45.31 2.67
191 192 1.064389 GGGACTAAAGCCCAGCATTCT 60.064 52.381 0.00 0.00 45.31 2.40
192 193 2.019984 GGACTAAAGCCCAGCATTCTG 58.980 52.381 0.00 0.00 40.02 3.02
193 194 2.619074 GGACTAAAGCCCAGCATTCTGT 60.619 50.000 0.00 0.00 38.66 3.41
194 195 2.680339 GACTAAAGCCCAGCATTCTGTC 59.320 50.000 0.00 0.00 38.66 3.51
195 196 2.019984 CTAAAGCCCAGCATTCTGTCC 58.980 52.381 0.00 0.00 38.66 4.02
196 197 0.613012 AAAGCCCAGCATTCTGTCCC 60.613 55.000 0.00 0.00 38.66 4.46
197 198 2.825836 GCCCAGCATTCTGTCCCG 60.826 66.667 0.00 0.00 38.66 5.14
198 199 2.124570 CCCAGCATTCTGTCCCGG 60.125 66.667 0.00 0.00 38.66 5.73
199 200 2.671070 CCAGCATTCTGTCCCGGT 59.329 61.111 0.00 0.00 38.66 5.28
200 201 1.002134 CCAGCATTCTGTCCCGGTT 60.002 57.895 0.00 0.00 38.66 4.44
201 202 1.026718 CCAGCATTCTGTCCCGGTTC 61.027 60.000 0.00 0.00 38.66 3.62
202 203 1.079127 AGCATTCTGTCCCGGTTCG 60.079 57.895 0.00 0.00 0.00 3.95
203 204 1.079405 GCATTCTGTCCCGGTTCGA 60.079 57.895 0.00 0.00 0.00 3.71
204 205 1.084370 GCATTCTGTCCCGGTTCGAG 61.084 60.000 0.00 0.00 0.00 4.04
205 206 1.084370 CATTCTGTCCCGGTTCGAGC 61.084 60.000 0.00 0.00 0.00 5.03
206 207 2.240162 ATTCTGTCCCGGTTCGAGCC 62.240 60.000 8.48 8.48 0.00 4.70
207 208 3.691342 CTGTCCCGGTTCGAGCCA 61.691 66.667 19.03 0.00 0.00 4.75
208 209 3.934391 CTGTCCCGGTTCGAGCCAC 62.934 68.421 19.03 9.54 0.00 5.01
219 220 3.998672 GAGCCACGAACCGGGACA 61.999 66.667 6.32 0.00 28.17 4.02
220 221 3.524648 GAGCCACGAACCGGGACAA 62.525 63.158 6.32 0.00 28.17 3.18
221 222 2.592287 GCCACGAACCGGGACAAA 60.592 61.111 6.32 0.00 28.17 2.83
222 223 1.969589 GCCACGAACCGGGACAAAT 60.970 57.895 6.32 0.00 28.17 2.32
223 224 1.873165 CCACGAACCGGGACAAATG 59.127 57.895 6.32 0.00 28.17 2.32
224 225 1.582610 CCACGAACCGGGACAAATGG 61.583 60.000 6.32 1.45 28.17 3.16
225 226 0.887387 CACGAACCGGGACAAATGGT 60.887 55.000 6.32 0.00 37.68 3.55
227 228 0.239879 CGAACCGGGACAAATGGTTG 59.760 55.000 6.32 0.00 45.63 3.77
234 235 4.716025 ACAAATGGTTGTGGGCCA 57.284 50.000 0.00 0.00 46.40 5.36
235 236 2.439837 ACAAATGGTTGTGGGCCAG 58.560 52.632 6.40 0.00 46.40 4.85
236 237 1.120795 ACAAATGGTTGTGGGCCAGG 61.121 55.000 6.40 0.00 46.40 4.45
237 238 0.831288 CAAATGGTTGTGGGCCAGGA 60.831 55.000 6.40 0.00 39.65 3.86
238 239 0.542702 AAATGGTTGTGGGCCAGGAG 60.543 55.000 6.40 0.00 39.65 3.69
239 240 3.590466 ATGGTTGTGGGCCAGGAGC 62.590 63.158 6.40 9.05 39.65 4.70
241 242 4.329545 GTTGTGGGCCAGGAGCGA 62.330 66.667 6.40 0.00 45.17 4.93
242 243 4.020617 TTGTGGGCCAGGAGCGAG 62.021 66.667 6.40 0.00 45.17 5.03
248 249 3.474570 GCCAGGAGCGAGGACCAT 61.475 66.667 0.00 0.00 0.00 3.55
249 250 3.036429 GCCAGGAGCGAGGACCATT 62.036 63.158 0.00 0.00 0.00 3.16
250 251 1.153289 CCAGGAGCGAGGACCATTG 60.153 63.158 0.00 0.00 0.00 2.82
251 252 1.153289 CAGGAGCGAGGACCATTGG 60.153 63.158 0.00 0.00 0.00 3.16
252 253 1.613630 AGGAGCGAGGACCATTGGT 60.614 57.895 8.42 8.42 39.44 3.67
260 261 4.313819 GACCATTGGTCCCGGTTC 57.686 61.111 23.00 0.00 46.19 3.62
261 262 1.743995 GACCATTGGTCCCGGTTCG 60.744 63.158 23.00 0.00 46.19 3.95
262 263 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
263 264 2.038269 CCATTGGTCCCGGTTCGTG 61.038 63.158 0.00 0.00 0.00 4.35
264 265 2.359478 ATTGGTCCCGGTTCGTGC 60.359 61.111 0.00 0.00 0.00 5.34
265 266 3.912745 ATTGGTCCCGGTTCGTGCC 62.913 63.158 0.00 0.00 0.00 5.01
267 268 3.384532 GGTCCCGGTTCGTGCCTA 61.385 66.667 0.00 0.00 0.00 3.93
268 269 2.183555 GTCCCGGTTCGTGCCTAG 59.816 66.667 0.00 0.00 0.00 3.02
269 270 2.036098 TCCCGGTTCGTGCCTAGA 59.964 61.111 0.00 0.00 0.00 2.43
270 271 1.607178 TCCCGGTTCGTGCCTAGAA 60.607 57.895 0.00 0.00 0.00 2.10
271 272 1.447314 CCCGGTTCGTGCCTAGAAC 60.447 63.158 0.00 7.30 45.16 3.01
274 275 4.180496 GTTCGTGCCTAGAACCGG 57.820 61.111 0.00 0.00 41.38 5.28
275 276 1.447314 GTTCGTGCCTAGAACCGGG 60.447 63.158 6.32 0.00 41.38 5.73
276 277 1.607178 TTCGTGCCTAGAACCGGGA 60.607 57.895 6.32 0.00 0.00 5.14
277 278 1.880819 TTCGTGCCTAGAACCGGGAC 61.881 60.000 6.32 0.00 39.24 4.46
278 279 2.642254 CGTGCCTAGAACCGGGACA 61.642 63.158 6.32 0.00 42.32 4.02
279 280 1.675219 GTGCCTAGAACCGGGACAA 59.325 57.895 6.32 0.00 41.87 3.18
280 281 0.035739 GTGCCTAGAACCGGGACAAA 59.964 55.000 6.32 0.00 41.87 2.83
281 282 0.988832 TGCCTAGAACCGGGACAAAT 59.011 50.000 6.32 0.00 0.00 2.32
282 283 1.339631 TGCCTAGAACCGGGACAAATG 60.340 52.381 6.32 0.00 0.00 2.32
283 284 2.017113 GCCTAGAACCGGGACAAATGG 61.017 57.143 6.32 0.00 0.00 3.16
284 285 1.408266 CCTAGAACCGGGACAAATGGG 60.408 57.143 6.32 0.00 0.00 4.00
285 286 1.280998 CTAGAACCGGGACAAATGGGT 59.719 52.381 6.32 0.00 0.00 4.51
286 287 0.481128 AGAACCGGGACAAATGGGTT 59.519 50.000 6.32 0.00 45.02 4.11
287 288 0.601057 GAACCGGGACAAATGGGTTG 59.399 55.000 6.32 0.00 42.54 3.77
288 289 0.186386 AACCGGGACAAATGGGTTGA 59.814 50.000 6.32 0.00 41.04 3.18
289 290 0.186386 ACCGGGACAAATGGGTTGAA 59.814 50.000 6.32 0.00 39.87 2.69
290 291 1.333177 CCGGGACAAATGGGTTGAAA 58.667 50.000 0.00 0.00 39.87 2.69
291 292 1.899142 CCGGGACAAATGGGTTGAAAT 59.101 47.619 0.00 0.00 39.87 2.17
292 293 2.353605 CCGGGACAAATGGGTTGAAATG 60.354 50.000 0.00 0.00 39.87 2.32
293 294 2.560542 CGGGACAAATGGGTTGAAATGA 59.439 45.455 0.00 0.00 39.87 2.57
294 295 3.006323 CGGGACAAATGGGTTGAAATGAA 59.994 43.478 0.00 0.00 39.87 2.57
295 296 4.314961 GGGACAAATGGGTTGAAATGAAC 58.685 43.478 0.00 0.00 39.87 3.18
296 297 4.314961 GGACAAATGGGTTGAAATGAACC 58.685 43.478 0.00 0.00 44.22 3.62
297 298 3.987220 GACAAATGGGTTGAAATGAACCG 59.013 43.478 0.00 0.00 45.67 4.44
298 299 3.639094 ACAAATGGGTTGAAATGAACCGA 59.361 39.130 0.00 0.00 45.67 4.69
299 300 4.236935 CAAATGGGTTGAAATGAACCGAG 58.763 43.478 0.00 0.00 45.67 4.63
300 301 2.940994 TGGGTTGAAATGAACCGAGA 57.059 45.000 0.00 0.00 45.67 4.04
301 302 2.500229 TGGGTTGAAATGAACCGAGAC 58.500 47.619 0.00 0.00 45.67 3.36
302 303 1.810755 GGGTTGAAATGAACCGAGACC 59.189 52.381 0.00 0.00 45.67 3.85
303 304 2.500229 GGTTGAAATGAACCGAGACCA 58.500 47.619 0.00 0.00 36.28 4.02
304 305 2.882137 GGTTGAAATGAACCGAGACCAA 59.118 45.455 0.00 0.00 36.28 3.67
305 306 3.506067 GGTTGAAATGAACCGAGACCAAT 59.494 43.478 0.00 0.00 36.28 3.16
306 307 4.475944 GTTGAAATGAACCGAGACCAATG 58.524 43.478 0.00 0.00 0.00 2.82
307 308 2.487762 TGAAATGAACCGAGACCAATGC 59.512 45.455 0.00 0.00 0.00 3.56
308 309 1.463674 AATGAACCGAGACCAATGCC 58.536 50.000 0.00 0.00 0.00 4.40
309 310 0.394352 ATGAACCGAGACCAATGCCC 60.394 55.000 0.00 0.00 0.00 5.36
310 311 1.002624 GAACCGAGACCAATGCCCA 60.003 57.895 0.00 0.00 0.00 5.36
311 312 1.303317 AACCGAGACCAATGCCCAC 60.303 57.895 0.00 0.00 0.00 4.61
312 313 2.819595 CCGAGACCAATGCCCACG 60.820 66.667 0.00 0.00 0.00 4.94
313 314 2.264480 CGAGACCAATGCCCACGA 59.736 61.111 0.00 0.00 0.00 4.35
314 315 1.811266 CGAGACCAATGCCCACGAG 60.811 63.158 0.00 0.00 0.00 4.18
315 316 1.450312 GAGACCAATGCCCACGAGG 60.450 63.158 0.00 0.00 39.47 4.63
342 343 2.901042 CCCCCTAGGCTCACGAAC 59.099 66.667 2.05 0.00 0.00 3.95
343 344 2.732619 CCCCCTAGGCTCACGAACC 61.733 68.421 2.05 0.00 0.00 3.62
344 345 2.494918 CCCTAGGCTCACGAACCG 59.505 66.667 2.05 0.00 0.00 4.44
345 346 2.494918 CCTAGGCTCACGAACCGG 59.505 66.667 0.00 0.00 0.00 5.28
346 347 2.494918 CTAGGCTCACGAACCGGG 59.505 66.667 6.32 0.00 0.00 5.73
347 348 2.036098 TAGGCTCACGAACCGGGA 59.964 61.111 6.32 0.00 36.75 5.14
348 349 2.280823 CTAGGCTCACGAACCGGGAC 62.281 65.000 6.32 0.00 32.99 4.46
362 363 4.579127 GGACGAATTCCCCATGGG 57.421 61.111 25.30 25.30 46.11 4.00
363 364 1.613061 GGACGAATTCCCCATGGGT 59.387 57.895 29.33 11.05 44.74 4.51
364 365 0.465642 GGACGAATTCCCCATGGGTC 60.466 60.000 29.33 18.51 44.74 4.46
365 366 0.465642 GACGAATTCCCCATGGGTCC 60.466 60.000 29.33 11.80 44.74 4.46
366 367 1.152756 CGAATTCCCCATGGGTCCC 60.153 63.158 29.33 12.15 44.74 4.46
367 368 1.152756 GAATTCCCCATGGGTCCCG 60.153 63.158 29.33 14.12 44.74 5.14
368 369 2.640581 GAATTCCCCATGGGTCCCGG 62.641 65.000 29.33 13.72 44.74 5.73
369 370 3.982196 ATTCCCCATGGGTCCCGGT 62.982 63.158 29.33 6.29 44.74 5.28
370 371 4.686437 TCCCCATGGGTCCCGGTT 62.686 66.667 29.33 0.00 44.74 4.44
371 372 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
372 373 4.483243 CCCATGGGTCCCGGTTCG 62.483 72.222 23.93 0.00 0.00 3.95
373 374 3.712907 CCATGGGTCCCGGTTCGT 61.713 66.667 2.85 0.00 0.00 3.85
374 375 2.435938 CATGGGTCCCGGTTCGTG 60.436 66.667 2.65 0.00 0.00 4.35
375 376 2.605295 ATGGGTCCCGGTTCGTGA 60.605 61.111 2.65 0.00 0.00 4.35
376 377 2.951101 ATGGGTCCCGGTTCGTGAC 61.951 63.158 2.65 0.00 33.83 3.67
377 378 3.308705 GGGTCCCGGTTCGTGACT 61.309 66.667 0.00 0.00 34.89 3.41
378 379 2.048503 GGTCCCGGTTCGTGACTG 60.049 66.667 0.00 0.00 34.89 3.51
379 380 2.567497 GGTCCCGGTTCGTGACTGA 61.567 63.158 0.00 0.00 34.89 3.41
380 381 1.364901 GTCCCGGTTCGTGACTGAA 59.635 57.895 0.00 0.00 36.72 3.02
381 382 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
385 386 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
386 387 1.364901 GTTCGTGACTGAACCGGGA 59.635 57.895 6.32 0.00 41.88 5.14
387 388 0.942884 GTTCGTGACTGAACCGGGAC 60.943 60.000 6.32 0.00 41.88 4.46
388 389 1.111116 TTCGTGACTGAACCGGGACT 61.111 55.000 6.32 0.00 0.00 3.85
389 390 0.250858 TCGTGACTGAACCGGGACTA 60.251 55.000 6.32 0.00 0.00 2.59
390 391 0.599558 CGTGACTGAACCGGGACTAA 59.400 55.000 6.32 0.00 0.00 2.24
391 392 1.203994 CGTGACTGAACCGGGACTAAT 59.796 52.381 6.32 0.00 0.00 1.73
392 393 2.618053 GTGACTGAACCGGGACTAATG 58.382 52.381 6.32 0.00 0.00 1.90
393 394 1.553248 TGACTGAACCGGGACTAATGG 59.447 52.381 6.32 0.00 0.00 3.16
394 395 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
395 396 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
396 397 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
397 398 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
398 399 1.921869 AACCGGGACTAATGGGCTGG 61.922 60.000 6.32 0.00 0.00 4.85
399 400 2.203209 CGGGACTAATGGGCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
400 401 2.195956 GGGACTAATGGGCTGGCC 59.804 66.667 14.23 14.23 0.00 5.36
401 402 2.689691 GGGACTAATGGGCTGGCCA 61.690 63.158 26.08 26.08 37.98 5.36
402 403 1.152881 GGACTAATGGGCTGGCCAG 60.153 63.158 29.34 29.34 37.98 4.85
403 404 1.152881 GACTAATGGGCTGGCCAGG 60.153 63.158 33.46 20.55 37.98 4.45
414 415 2.362375 GGCCAGGCCCGAATGAAA 60.362 61.111 21.62 0.00 44.06 2.69
415 416 2.418083 GGCCAGGCCCGAATGAAAG 61.418 63.158 21.62 0.00 44.06 2.62
416 417 3.068729 GCCAGGCCCGAATGAAAGC 62.069 63.158 0.00 0.00 0.00 3.51
417 418 2.418083 CCAGGCCCGAATGAAAGCC 61.418 63.158 0.00 0.00 46.13 4.35
419 420 2.043953 GGCCCGAATGAAAGCCCT 60.044 61.111 0.00 0.00 39.60 5.19
420 421 2.418083 GGCCCGAATGAAAGCCCTG 61.418 63.158 0.00 0.00 39.60 4.45
421 422 1.678970 GCCCGAATGAAAGCCCTGT 60.679 57.895 0.00 0.00 0.00 4.00
422 423 1.250840 GCCCGAATGAAAGCCCTGTT 61.251 55.000 0.00 0.00 0.00 3.16
423 424 1.256812 CCCGAATGAAAGCCCTGTTT 58.743 50.000 0.00 0.00 0.00 2.83
424 425 1.618343 CCCGAATGAAAGCCCTGTTTT 59.382 47.619 0.00 0.00 0.00 2.43
425 426 2.352715 CCCGAATGAAAGCCCTGTTTTC 60.353 50.000 0.00 0.00 34.24 2.29
426 427 2.558359 CCGAATGAAAGCCCTGTTTTCT 59.442 45.455 5.28 0.00 34.63 2.52
427 428 3.756434 CCGAATGAAAGCCCTGTTTTCTA 59.244 43.478 5.28 0.00 34.63 2.10
428 429 4.379499 CCGAATGAAAGCCCTGTTTTCTAC 60.379 45.833 5.28 0.00 34.63 2.59
429 430 4.455877 CGAATGAAAGCCCTGTTTTCTACT 59.544 41.667 5.28 0.00 34.63 2.57
430 431 5.642063 CGAATGAAAGCCCTGTTTTCTACTA 59.358 40.000 5.28 0.00 34.63 1.82
431 432 6.183360 CGAATGAAAGCCCTGTTTTCTACTAG 60.183 42.308 5.28 0.00 34.63 2.57
432 433 5.562298 TGAAAGCCCTGTTTTCTACTAGT 57.438 39.130 0.00 0.00 34.63 2.57
433 434 5.305585 TGAAAGCCCTGTTTTCTACTAGTG 58.694 41.667 5.39 0.00 34.63 2.74
437 438 3.619242 GCCCTGTTTTCTACTAGTGGACC 60.619 52.174 8.67 1.00 0.00 4.46
447 448 1.433592 ACTAGTGGACCCAGACCTCTT 59.566 52.381 0.00 0.00 33.98 2.85
449 450 0.489567 AGTGGACCCAGACCTCTTCT 59.510 55.000 0.00 0.00 33.33 2.85
450 451 1.717077 AGTGGACCCAGACCTCTTCTA 59.283 52.381 0.00 0.00 31.12 2.10
452 453 1.273098 TGGACCCAGACCTCTTCTACC 60.273 57.143 0.00 0.00 31.12 3.18
475 476 6.214005 ACCCACTAAGGCACTAACTAATTACA 59.786 38.462 0.00 0.00 38.49 2.41
477 478 7.773690 CCCACTAAGGCACTAACTAATTACATT 59.226 37.037 0.00 0.00 38.49 2.71
478 479 9.826574 CCACTAAGGCACTAACTAATTACATTA 57.173 33.333 0.00 0.00 38.49 1.90
504 509 2.553904 CCATTGCCTTCTCACTCCACTT 60.554 50.000 0.00 0.00 0.00 3.16
531 536 6.294120 CCACTACTCTGCTTAGATCAGATCTG 60.294 46.154 21.58 17.07 40.51 2.90
534 539 5.448654 ACTCTGCTTAGATCAGATCTGAGT 58.551 41.667 28.26 21.94 42.95 3.41
540 545 5.658468 CTTAGATCAGATCTGAGTTGCACA 58.342 41.667 28.26 5.29 43.61 4.57
548 553 2.327940 GAGTTGCACACACCGCAC 59.672 61.111 0.00 0.00 39.59 5.34
602 607 4.240103 CGCGGCAGATCCATCCCA 62.240 66.667 0.00 0.00 34.01 4.37
603 608 2.433446 GCGGCAGATCCATCCCAT 59.567 61.111 0.00 0.00 34.01 4.00
617 622 0.564171 TCCCATGAGGTATACCCCGT 59.436 55.000 18.65 5.16 36.75 5.28
636 641 0.749091 TCTCCCATTGCCATGCTTCG 60.749 55.000 0.00 0.00 0.00 3.79
685 690 2.433664 GGTGCAGCAATGCTTGGC 60.434 61.111 11.86 7.92 36.40 4.52
690 695 1.956629 GCAGCAATGCTTGGCCTCAT 61.957 55.000 4.36 1.75 36.40 2.90
695 700 0.465097 AATGCTTGGCCTCATCTCCG 60.465 55.000 3.32 0.00 0.00 4.63
718 724 6.021596 CGTTTTAATCCATTCTCTTCCAACG 58.978 40.000 0.00 0.00 0.00 4.10
719 725 6.322491 GTTTTAATCCATTCTCTTCCAACGG 58.678 40.000 0.00 0.00 0.00 4.44
720 726 3.721087 AATCCATTCTCTTCCAACGGT 57.279 42.857 0.00 0.00 0.00 4.83
722 728 1.697432 TCCATTCTCTTCCAACGGTGT 59.303 47.619 0.00 0.00 0.00 4.16
724 730 3.325425 TCCATTCTCTTCCAACGGTGTTA 59.675 43.478 0.00 0.00 0.00 2.41
730 736 3.933332 CTCTTCCAACGGTGTTAAGATCC 59.067 47.826 13.92 0.00 29.39 3.36
732 738 3.048337 TCCAACGGTGTTAAGATCCAC 57.952 47.619 0.00 0.00 0.00 4.02
734 740 2.610976 CCAACGGTGTTAAGATCCACGA 60.611 50.000 0.00 0.00 32.30 4.35
735 741 3.259064 CAACGGTGTTAAGATCCACGAT 58.741 45.455 0.00 0.00 32.30 3.73
739 745 3.181490 CGGTGTTAAGATCCACGATGAGA 60.181 47.826 0.00 0.00 32.30 3.27
771 777 6.302313 GGAAATAATCAACTGTTTTCGACGTG 59.698 38.462 0.00 0.00 0.00 4.49
772 778 3.602390 AATCAACTGTTTTCGACGTGG 57.398 42.857 0.00 0.00 0.00 4.94
776 782 0.176219 ACTGTTTTCGACGTGGACCA 59.824 50.000 0.00 0.00 0.00 4.02
790 796 2.882137 GTGGACCATCACCGAAGAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
842 848 5.676552 TCTCTACTACTCTGCTTCGATCTT 58.323 41.667 0.00 0.00 0.00 2.40
844 850 5.186942 TCTACTACTCTGCTTCGATCTTGT 58.813 41.667 0.00 0.00 0.00 3.16
848 854 0.321346 TCTGCTTCGATCTTGTGGCA 59.679 50.000 0.00 0.00 0.00 4.92
851 857 1.712081 CTTCGATCTTGTGGCAGCG 59.288 57.895 0.00 0.00 0.00 5.18
852 858 1.699656 CTTCGATCTTGTGGCAGCGG 61.700 60.000 0.00 0.00 0.00 5.52
853 859 3.869272 CGATCTTGTGGCAGCGGC 61.869 66.667 0.00 0.00 40.13 6.53
888 895 3.983344 CAGCGATTTTTGCTAGCTTGTTT 59.017 39.130 17.23 0.00 41.72 2.83
931 938 6.763135 GCATAGTGTCTTACTTCCATCAATGA 59.237 38.462 0.00 0.00 40.89 2.57
938 952 7.451255 TGTCTTACTTCCATCAATGATTTTGGT 59.549 33.333 0.00 0.00 0.00 3.67
960 974 5.360144 GGTAGGCTGTAGATTGAGAACACTA 59.640 44.000 0.00 0.00 0.00 2.74
987 1001 2.883386 GCATTAATTGAGGGAGCTCTGG 59.117 50.000 14.64 0.00 0.00 3.86
1038 1054 2.048023 CGTGGCGACAGGGGTACTA 61.048 63.158 2.13 0.00 44.46 1.82
1077 1093 2.260869 GGCTGTTCTGCTCGGCAAA 61.261 57.895 0.35 0.00 38.41 3.68
1082 1098 0.514691 GTTCTGCTCGGCAAAGAGTG 59.485 55.000 0.35 0.52 38.41 3.51
1114 1130 2.109126 GGTGTGCGCAAGGAGATCC 61.109 63.158 14.00 3.25 39.66 3.36
1222 1241 0.533755 GATGAATGAGGTGCGGGAGG 60.534 60.000 0.00 0.00 0.00 4.30
1227 1246 3.311110 GAGGTGCGGGAGGTGTCA 61.311 66.667 0.00 0.00 0.00 3.58
1265 1284 3.242543 GCCATCGATGACTTCATGTTGTC 60.243 47.826 26.86 11.83 36.57 3.18
1351 1895 1.524482 GGGAAGATGAAGGCTCGCT 59.476 57.895 0.00 0.00 0.00 4.93
1390 2019 8.133024 AGAGATACAAGATCTGAAGAAACAGT 57.867 34.615 0.00 0.00 38.79 3.55
1457 2093 5.422012 AGACCTTCTCAAACACCAAAAATGT 59.578 36.000 0.00 0.00 0.00 2.71
1569 2297 2.802816 GACTGAAGAAGCGTCAACACAT 59.197 45.455 1.61 0.00 0.00 3.21
1659 2387 6.784031 AGTGTATGAAGACCTCCAAGAAAAT 58.216 36.000 0.00 0.00 0.00 1.82
1722 2450 8.037166 CCGGACATGATGAATATCTTGAGAATA 58.963 37.037 0.00 0.00 39.55 1.75
1753 2481 7.607615 AGTCAAGTTAGTGGTCTACCTTTTA 57.392 36.000 0.02 0.00 36.82 1.52
1755 2483 8.488668 AGTCAAGTTAGTGGTCTACCTTTTAAA 58.511 33.333 0.02 0.00 36.82 1.52
1791 2519 7.198390 CAGGGAGCATAAAACAAGTTATCATG 58.802 38.462 0.00 0.00 0.00 3.07
1921 2950 5.440234 GAGTACATACTCCGATGACACAT 57.560 43.478 7.70 0.00 45.33 3.21
1926 2955 9.244292 AGTACATACTCCGATGACACATTATAT 57.756 33.333 0.00 0.00 0.00 0.86
1937 3052 8.764287 CGATGACACATTATATACACACACATT 58.236 33.333 0.00 0.00 0.00 2.71
1965 3369 4.463050 AGGACAAATTTTCCTACCACCA 57.537 40.909 15.89 0.00 42.06 4.17
1966 3370 5.010708 AGGACAAATTTTCCTACCACCAT 57.989 39.130 15.89 0.00 42.06 3.55
1967 3371 5.016831 AGGACAAATTTTCCTACCACCATC 58.983 41.667 15.89 0.00 42.06 3.51
1978 3383 1.197812 ACCACCATCGGTAGTTACCC 58.802 55.000 2.83 0.00 43.51 3.69
1979 3384 1.273438 ACCACCATCGGTAGTTACCCT 60.273 52.381 2.83 0.00 43.51 4.34
1982 3387 2.698797 CACCATCGGTAGTTACCCTCAT 59.301 50.000 2.83 0.00 43.51 2.90
1983 3388 2.698797 ACCATCGGTAGTTACCCTCATG 59.301 50.000 2.83 3.50 43.51 3.07
1986 3391 3.090210 TCGGTAGTTACCCTCATGTGA 57.910 47.619 2.83 0.00 43.51 3.58
1992 3397 6.572898 CGGTAGTTACCCTCATGTGAGTTTTA 60.573 42.308 9.03 0.00 43.51 1.52
2008 3413 9.642327 TGTGAGTTTTATATGTTGTATGTACGT 57.358 29.630 0.00 0.00 0.00 3.57
2016 3421 9.940166 TTATATGTTGTATGTACGTAGTCACTG 57.060 33.333 0.00 0.00 43.93 3.66
2017 3422 5.694231 TGTTGTATGTACGTAGTCACTGT 57.306 39.130 0.00 0.00 43.93 3.55
2018 3423 5.692814 TGTTGTATGTACGTAGTCACTGTC 58.307 41.667 0.00 0.00 43.93 3.51
2019 3424 5.239087 TGTTGTATGTACGTAGTCACTGTCA 59.761 40.000 0.00 0.00 43.93 3.58
2020 3425 5.945466 TGTATGTACGTAGTCACTGTCAA 57.055 39.130 0.00 0.00 43.93 3.18
2022 3427 6.737118 TGTATGTACGTAGTCACTGTCAAAA 58.263 36.000 0.00 0.00 43.93 2.44
2023 3428 6.638063 TGTATGTACGTAGTCACTGTCAAAAC 59.362 38.462 0.00 0.00 43.93 2.43
2024 3429 4.362279 TGTACGTAGTCACTGTCAAAACC 58.638 43.478 0.00 0.00 43.93 3.27
2025 3430 2.466846 ACGTAGTCACTGTCAAAACCG 58.533 47.619 0.00 0.00 29.74 4.44
2037 3442 5.010314 ACTGTCAAAACCGAGAGTATGTACA 59.990 40.000 0.00 0.00 37.72 2.90
2038 3443 6.032956 TGTCAAAACCGAGAGTATGTACAT 57.967 37.500 13.93 13.93 0.00 2.29
2042 3447 7.220300 GTCAAAACCGAGAGTATGTACATGTAG 59.780 40.741 18.81 4.02 0.00 2.74
2149 3555 9.920946 ACATACAAGTATGAAGGTATTTTGGAT 57.079 29.630 23.02 0.00 44.22 3.41
2160 3566 9.391006 TGAAGGTATTTTGGATATACAACTCAC 57.609 33.333 0.00 0.00 31.53 3.51
2161 3567 8.747538 AAGGTATTTTGGATATACAACTCACC 57.252 34.615 12.81 12.81 31.53 4.02
2163 3569 7.993183 AGGTATTTTGGATATACAACTCACCTG 59.007 37.037 18.95 0.00 35.31 4.00
2164 3570 6.699575 ATTTTGGATATACAACTCACCTGC 57.300 37.500 0.00 0.00 0.00 4.85
2165 3571 4.835284 TTGGATATACAACTCACCTGCA 57.165 40.909 0.00 0.00 0.00 4.41
2166 3572 4.835284 TGGATATACAACTCACCTGCAA 57.165 40.909 0.00 0.00 0.00 4.08
2167 3573 5.372343 TGGATATACAACTCACCTGCAAT 57.628 39.130 0.00 0.00 0.00 3.56
2168 3574 5.754782 TGGATATACAACTCACCTGCAATT 58.245 37.500 0.00 0.00 0.00 2.32
2169 3575 6.186957 TGGATATACAACTCACCTGCAATTT 58.813 36.000 0.00 0.00 0.00 1.82
2170 3576 6.663093 TGGATATACAACTCACCTGCAATTTT 59.337 34.615 0.00 0.00 0.00 1.82
2171 3577 7.178274 TGGATATACAACTCACCTGCAATTTTT 59.822 33.333 0.00 0.00 0.00 1.94
2202 3608 7.886629 AATTTGCTTTGAGATATCTTAGGCA 57.113 32.000 16.51 16.51 0.00 4.75
2203 3609 8.474710 AATTTGCTTTGAGATATCTTAGGCAT 57.525 30.769 19.32 8.72 0.00 4.40
2204 3610 9.578576 AATTTGCTTTGAGATATCTTAGGCATA 57.421 29.630 19.32 16.40 0.00 3.14
2205 3611 8.613060 TTTGCTTTGAGATATCTTAGGCATAG 57.387 34.615 19.32 12.70 0.00 2.23
2255 3661 7.553881 AGTGATAATACTAACACATGGTTGC 57.446 36.000 0.00 0.00 40.73 4.17
2261 3670 6.882610 ATACTAACACATGGTTGCATATGG 57.117 37.500 4.56 0.00 40.73 2.74
2264 3673 3.317455 ACACATGGTTGCATATGGGAT 57.683 42.857 13.35 0.00 32.15 3.85
2266 3675 4.144297 ACACATGGTTGCATATGGGATAC 58.856 43.478 13.35 0.00 32.15 2.24
2275 3684 6.349300 GTTGCATATGGGATACGAGGATAAT 58.651 40.000 4.56 0.00 37.60 1.28
2282 3691 3.131755 GGGATACGAGGATAATTACCCCG 59.868 52.174 5.48 5.48 37.60 5.73
2284 3693 1.345063 ACGAGGATAATTACCCCGGG 58.655 55.000 15.80 15.80 0.00 5.73
2294 3703 0.940452 TTACCCCGGGTGGTAGGATA 59.060 55.000 21.85 0.00 41.73 2.59
2295 3704 1.169765 TACCCCGGGTGGTAGGATAT 58.830 55.000 21.85 0.00 39.91 1.63
2296 3705 1.169765 ACCCCGGGTGGTAGGATATA 58.830 55.000 21.85 0.00 36.67 0.86
2297 3706 1.726352 ACCCCGGGTGGTAGGATATAT 59.274 52.381 21.85 0.00 36.67 0.86
2298 3707 2.935199 ACCCCGGGTGGTAGGATATATA 59.065 50.000 21.85 0.00 36.67 0.86
2299 3708 3.538980 ACCCCGGGTGGTAGGATATATAT 59.461 47.826 21.85 0.00 36.67 0.86
2300 3709 4.738652 ACCCCGGGTGGTAGGATATATATA 59.261 45.833 21.85 0.00 36.67 0.86
2301 3710 5.162903 ACCCCGGGTGGTAGGATATATATAG 60.163 48.000 21.85 0.00 36.67 1.31
2302 3711 5.162903 CCCCGGGTGGTAGGATATATATAGT 60.163 48.000 21.85 0.00 0.00 2.12
2303 3712 5.773680 CCCGGGTGGTAGGATATATATAGTG 59.226 48.000 14.18 0.00 0.00 2.74
2304 3713 6.371278 CCGGGTGGTAGGATATATATAGTGT 58.629 44.000 0.00 0.00 0.00 3.55
2305 3714 6.837568 CCGGGTGGTAGGATATATATAGTGTT 59.162 42.308 0.00 0.00 0.00 3.32
2306 3715 7.014038 CCGGGTGGTAGGATATATATAGTGTTC 59.986 44.444 0.00 0.00 0.00 3.18
2307 3716 7.558807 CGGGTGGTAGGATATATATAGTGTTCA 59.441 40.741 0.00 0.00 0.00 3.18
2308 3717 9.435570 GGGTGGTAGGATATATATAGTGTTCAT 57.564 37.037 0.00 0.00 0.00 2.57
2568 3977 2.354103 CCTCTCTTGACATTCTCCGCAA 60.354 50.000 0.00 0.00 0.00 4.85
2773 4182 2.800544 CCGTCACACCTAACTGTTGAAG 59.199 50.000 2.69 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.562298 TGAGGTGTTCAATGAAATGCCC 59.438 45.455 0.00 0.00 31.34 5.36
11 12 4.624024 CACATGAGGTGTTCAATGAAATGC 59.376 41.667 0.00 0.00 42.75 3.56
27 28 2.806019 GCTCACCTCCTATGCACATGAG 60.806 54.545 0.00 0.00 36.11 2.90
28 29 1.139654 GCTCACCTCCTATGCACATGA 59.860 52.381 0.00 0.00 0.00 3.07
29 30 1.140452 AGCTCACCTCCTATGCACATG 59.860 52.381 0.00 0.00 0.00 3.21
30 31 1.504912 AGCTCACCTCCTATGCACAT 58.495 50.000 0.00 0.00 0.00 3.21
31 32 1.757118 GTAGCTCACCTCCTATGCACA 59.243 52.381 0.00 0.00 0.00 4.57
32 33 2.035632 AGTAGCTCACCTCCTATGCAC 58.964 52.381 0.00 0.00 0.00 4.57
33 34 2.461300 AGTAGCTCACCTCCTATGCA 57.539 50.000 0.00 0.00 0.00 3.96
34 35 3.756434 CTCTAGTAGCTCACCTCCTATGC 59.244 52.174 0.00 0.00 0.00 3.14
57 58 4.463788 GGGGGAGGGCATTGGGTG 62.464 72.222 0.00 0.00 0.00 4.61
58 59 4.720443 AGGGGGAGGGCATTGGGT 62.720 66.667 0.00 0.00 0.00 4.51
59 60 3.825623 GAGGGGGAGGGCATTGGG 61.826 72.222 0.00 0.00 0.00 4.12
60 61 4.195334 CGAGGGGGAGGGCATTGG 62.195 72.222 0.00 0.00 0.00 3.16
61 62 4.883354 GCGAGGGGGAGGGCATTG 62.883 72.222 0.00 0.00 0.00 2.82
74 75 3.669344 TTTTTGCTGGCCGGCGAG 61.669 61.111 31.85 31.85 34.52 5.03
99 100 1.370437 CAGCAGAGCACTCCACAGT 59.630 57.895 0.00 0.00 0.00 3.55
100 101 2.033755 GCAGCAGAGCACTCCACAG 61.034 63.158 0.00 0.00 0.00 3.66
101 102 2.031616 GCAGCAGAGCACTCCACA 59.968 61.111 0.00 0.00 0.00 4.17
102 103 3.117171 CGCAGCAGAGCACTCCAC 61.117 66.667 0.00 0.00 0.00 4.02
103 104 4.383861 CCGCAGCAGAGCACTCCA 62.384 66.667 0.00 0.00 0.00 3.86
114 115 2.521958 ATATACCCCATCGCCGCAGC 62.522 60.000 0.00 0.00 0.00 5.25
115 116 0.821517 TATATACCCCATCGCCGCAG 59.178 55.000 0.00 0.00 0.00 5.18
116 117 1.491668 ATATATACCCCATCGCCGCA 58.508 50.000 0.00 0.00 0.00 5.69
117 118 2.029290 CCTATATATACCCCATCGCCGC 60.029 54.545 0.00 0.00 0.00 6.53
118 119 2.029290 GCCTATATATACCCCATCGCCG 60.029 54.545 0.00 0.00 0.00 6.46
119 120 2.969950 TGCCTATATATACCCCATCGCC 59.030 50.000 0.00 0.00 0.00 5.54
120 121 4.101119 AGTTGCCTATATATACCCCATCGC 59.899 45.833 0.00 0.00 0.00 4.58
121 122 5.362717 TGAGTTGCCTATATATACCCCATCG 59.637 44.000 0.00 0.00 0.00 3.84
122 123 6.808321 TGAGTTGCCTATATATACCCCATC 57.192 41.667 0.00 0.00 0.00 3.51
123 124 7.771506 AATGAGTTGCCTATATATACCCCAT 57.228 36.000 0.00 0.00 0.00 4.00
124 125 7.018149 ACAAATGAGTTGCCTATATATACCCCA 59.982 37.037 0.00 0.00 41.31 4.96
125 126 7.402862 ACAAATGAGTTGCCTATATATACCCC 58.597 38.462 0.00 0.00 41.31 4.95
126 127 7.553044 GGACAAATGAGTTGCCTATATATACCC 59.447 40.741 0.00 0.00 41.31 3.69
127 128 7.553044 GGGACAAATGAGTTGCCTATATATACC 59.447 40.741 0.00 0.00 41.31 2.73
128 129 7.277981 CGGGACAAATGAGTTGCCTATATATAC 59.722 40.741 0.00 0.00 41.31 1.47
129 130 7.327975 CGGGACAAATGAGTTGCCTATATATA 58.672 38.462 0.00 0.00 41.31 0.86
130 131 6.173339 CGGGACAAATGAGTTGCCTATATAT 58.827 40.000 0.00 0.00 41.31 0.86
131 132 5.512404 CCGGGACAAATGAGTTGCCTATATA 60.512 44.000 0.00 0.00 41.31 0.86
132 133 4.389374 CGGGACAAATGAGTTGCCTATAT 58.611 43.478 0.00 0.00 41.31 0.86
133 134 3.433031 CCGGGACAAATGAGTTGCCTATA 60.433 47.826 0.00 0.00 41.31 1.31
134 135 2.643551 CGGGACAAATGAGTTGCCTAT 58.356 47.619 0.00 0.00 41.31 2.57
135 136 1.339631 CCGGGACAAATGAGTTGCCTA 60.340 52.381 0.00 0.00 41.31 3.93
136 137 0.609131 CCGGGACAAATGAGTTGCCT 60.609 55.000 0.00 0.00 41.31 4.75
137 138 0.893727 ACCGGGACAAATGAGTTGCC 60.894 55.000 6.32 0.00 41.31 4.52
138 139 0.958822 AACCGGGACAAATGAGTTGC 59.041 50.000 6.32 0.00 41.31 4.17
139 140 2.360801 ACAAACCGGGACAAATGAGTTG 59.639 45.455 6.32 0.00 43.43 3.16
140 141 2.360801 CACAAACCGGGACAAATGAGTT 59.639 45.455 6.32 0.00 0.00 3.01
141 142 1.953686 CACAAACCGGGACAAATGAGT 59.046 47.619 6.32 0.00 0.00 3.41
142 143 1.269448 CCACAAACCGGGACAAATGAG 59.731 52.381 6.32 0.00 0.00 2.90
143 144 1.323412 CCACAAACCGGGACAAATGA 58.677 50.000 6.32 0.00 0.00 2.57
144 145 1.036707 ACCACAAACCGGGACAAATG 58.963 50.000 6.32 0.00 0.00 2.32
145 146 2.660670 TACCACAAACCGGGACAAAT 57.339 45.000 6.32 0.00 0.00 2.32
146 147 2.660670 ATACCACAAACCGGGACAAA 57.339 45.000 6.32 0.00 0.00 2.83
147 148 3.784511 TTATACCACAAACCGGGACAA 57.215 42.857 6.32 0.00 0.00 3.18
148 149 3.410508 GTTTATACCACAAACCGGGACA 58.589 45.455 6.32 0.00 31.13 4.02
149 150 2.749076 GGTTTATACCACAAACCGGGAC 59.251 50.000 6.32 0.00 43.94 4.46
150 151 3.070476 GGTTTATACCACAAACCGGGA 57.930 47.619 6.32 0.00 43.94 5.14
155 156 3.678289 AGTCCCGGTTTATACCACAAAC 58.322 45.455 0.00 0.00 45.31 2.93
156 157 5.495926 TTAGTCCCGGTTTATACCACAAA 57.504 39.130 0.00 0.00 45.31 2.83
157 158 5.490159 CTTTAGTCCCGGTTTATACCACAA 58.510 41.667 0.00 0.00 45.31 3.33
158 159 4.623647 GCTTTAGTCCCGGTTTATACCACA 60.624 45.833 0.00 0.00 45.31 4.17
159 160 3.873361 GCTTTAGTCCCGGTTTATACCAC 59.127 47.826 0.00 0.00 45.31 4.16
160 161 3.118298 GGCTTTAGTCCCGGTTTATACCA 60.118 47.826 0.00 0.00 45.31 3.25
161 162 3.470709 GGCTTTAGTCCCGGTTTATACC 58.529 50.000 0.00 0.00 41.33 2.73
162 163 3.118298 TGGGCTTTAGTCCCGGTTTATAC 60.118 47.826 0.00 0.00 46.92 1.47
163 164 3.113824 TGGGCTTTAGTCCCGGTTTATA 58.886 45.455 0.00 0.00 46.92 0.98
164 165 1.917568 TGGGCTTTAGTCCCGGTTTAT 59.082 47.619 0.00 0.00 46.92 1.40
165 166 1.279846 CTGGGCTTTAGTCCCGGTTTA 59.720 52.381 0.00 0.00 46.92 2.01
166 167 0.037734 CTGGGCTTTAGTCCCGGTTT 59.962 55.000 0.00 0.00 46.92 3.27
167 168 1.683441 CTGGGCTTTAGTCCCGGTT 59.317 57.895 0.00 0.00 46.92 4.44
168 169 3.400188 CTGGGCTTTAGTCCCGGT 58.600 61.111 0.00 0.00 46.92 5.28
170 171 0.394352 AATGCTGGGCTTTAGTCCCG 60.394 55.000 0.00 0.00 46.92 5.14
171 172 1.064389 AGAATGCTGGGCTTTAGTCCC 60.064 52.381 0.00 0.54 39.61 4.46
172 173 2.019984 CAGAATGCTGGGCTTTAGTCC 58.980 52.381 0.00 0.00 41.09 3.85
173 174 2.680339 GACAGAATGCTGGGCTTTAGTC 59.320 50.000 5.47 0.00 46.60 2.59
174 175 2.619074 GGACAGAATGCTGGGCTTTAGT 60.619 50.000 5.47 0.00 46.60 2.24
175 176 2.019984 GGACAGAATGCTGGGCTTTAG 58.980 52.381 5.47 0.00 46.60 1.85
176 177 1.340991 GGGACAGAATGCTGGGCTTTA 60.341 52.381 5.47 0.00 46.60 1.85
177 178 0.613012 GGGACAGAATGCTGGGCTTT 60.613 55.000 5.47 0.00 46.60 3.51
178 179 1.000396 GGGACAGAATGCTGGGCTT 60.000 57.895 5.47 0.00 46.60 4.35
179 180 2.679716 GGGACAGAATGCTGGGCT 59.320 61.111 5.47 0.00 46.60 5.19
180 181 2.825836 CGGGACAGAATGCTGGGC 60.826 66.667 5.47 0.00 46.60 5.36
181 182 2.124570 CCGGGACAGAATGCTGGG 60.125 66.667 5.47 0.00 46.60 4.45
184 185 1.079127 CGAACCGGGACAGAATGCT 60.079 57.895 6.32 0.00 42.53 3.79
185 186 1.079405 TCGAACCGGGACAGAATGC 60.079 57.895 6.32 0.00 42.53 3.56
186 187 1.084370 GCTCGAACCGGGACAGAATG 61.084 60.000 6.32 0.00 46.00 2.67
187 188 1.218316 GCTCGAACCGGGACAGAAT 59.782 57.895 6.32 0.00 0.00 2.40
188 189 2.654877 GCTCGAACCGGGACAGAA 59.345 61.111 6.32 0.00 0.00 3.02
189 190 3.379445 GGCTCGAACCGGGACAGA 61.379 66.667 6.32 0.00 34.24 3.41
190 191 3.691342 TGGCTCGAACCGGGACAG 61.691 66.667 6.32 0.00 42.08 3.51
191 192 3.998672 GTGGCTCGAACCGGGACA 61.999 66.667 6.32 0.00 46.14 4.02
202 203 2.999739 TTTGTCCCGGTTCGTGGCTC 63.000 60.000 0.00 0.00 0.00 4.70
203 204 2.406002 ATTTGTCCCGGTTCGTGGCT 62.406 55.000 0.00 0.00 0.00 4.75
204 205 1.969589 ATTTGTCCCGGTTCGTGGC 60.970 57.895 0.00 0.00 0.00 5.01
205 206 1.582610 CCATTTGTCCCGGTTCGTGG 61.583 60.000 0.00 0.00 0.00 4.94
206 207 0.887387 ACCATTTGTCCCGGTTCGTG 60.887 55.000 0.00 0.00 0.00 4.35
207 208 0.179012 AACCATTTGTCCCGGTTCGT 60.179 50.000 0.00 0.00 38.69 3.85
208 209 0.239879 CAACCATTTGTCCCGGTTCG 59.760 55.000 0.00 0.00 41.07 3.95
209 210 1.000717 CACAACCATTTGTCCCGGTTC 60.001 52.381 0.00 0.00 44.57 3.62
210 211 1.036707 CACAACCATTTGTCCCGGTT 58.963 50.000 0.00 0.00 44.57 4.44
211 212 0.825840 CCACAACCATTTGTCCCGGT 60.826 55.000 0.00 0.00 44.57 5.28
212 213 1.531739 CCCACAACCATTTGTCCCGG 61.532 60.000 0.00 0.00 44.57 5.73
213 214 1.963679 CCCACAACCATTTGTCCCG 59.036 57.895 0.00 0.00 44.57 5.14
214 215 1.671166 GCCCACAACCATTTGTCCC 59.329 57.895 0.00 0.00 44.57 4.46
215 216 1.118356 TGGCCCACAACCATTTGTCC 61.118 55.000 0.00 0.00 44.57 4.02
216 217 0.318120 CTGGCCCACAACCATTTGTC 59.682 55.000 0.00 0.00 44.57 3.18
218 219 0.831288 TCCTGGCCCACAACCATTTG 60.831 55.000 0.00 0.00 36.36 2.32
219 220 0.542702 CTCCTGGCCCACAACCATTT 60.543 55.000 0.00 0.00 36.36 2.32
220 221 1.077265 CTCCTGGCCCACAACCATT 59.923 57.895 0.00 0.00 36.36 3.16
221 222 2.765969 CTCCTGGCCCACAACCAT 59.234 61.111 0.00 0.00 36.36 3.55
222 223 4.284550 GCTCCTGGCCCACAACCA 62.285 66.667 0.00 0.00 35.40 3.67
224 225 4.329545 TCGCTCCTGGCCCACAAC 62.330 66.667 0.00 0.00 37.74 3.32
225 226 4.020617 CTCGCTCCTGGCCCACAA 62.021 66.667 0.00 0.00 37.74 3.33
231 232 3.036429 AATGGTCCTCGCTCCTGGC 62.036 63.158 0.00 0.00 37.64 4.85
232 233 1.153289 CAATGGTCCTCGCTCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
233 234 1.153289 CCAATGGTCCTCGCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
234 235 1.613630 ACCAATGGTCCTCGCTCCT 60.614 57.895 0.00 0.00 0.00 3.69
235 236 1.153349 GACCAATGGTCCTCGCTCC 60.153 63.158 21.30 0.00 46.19 4.70
236 237 4.522971 GACCAATGGTCCTCGCTC 57.477 61.111 21.30 0.00 46.19 5.03
244 245 2.349755 CGAACCGGGACCAATGGT 59.650 61.111 3.74 3.74 39.44 3.55
245 246 2.038269 CACGAACCGGGACCAATGG 61.038 63.158 6.32 0.00 28.17 3.16
246 247 2.686816 GCACGAACCGGGACCAATG 61.687 63.158 6.32 0.00 28.17 2.82
247 248 2.359478 GCACGAACCGGGACCAAT 60.359 61.111 6.32 0.00 28.17 3.16
248 249 4.629523 GGCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.34 3.67
250 251 3.366739 CTAGGCACGAACCGGGACC 62.367 68.421 6.32 0.00 40.38 4.46
251 252 1.880819 TTCTAGGCACGAACCGGGAC 61.881 60.000 6.32 0.00 39.41 4.46
252 253 1.607178 TTCTAGGCACGAACCGGGA 60.607 57.895 6.32 0.00 28.17 5.14
253 254 1.447314 GTTCTAGGCACGAACCGGG 60.447 63.158 6.32 0.00 35.81 5.73
254 255 4.180496 GTTCTAGGCACGAACCGG 57.820 61.111 0.00 0.00 35.81 5.28
257 258 1.447314 CCCGGTTCTAGGCACGAAC 60.447 63.158 0.00 9.57 39.92 3.95
258 259 1.607178 TCCCGGTTCTAGGCACGAA 60.607 57.895 0.00 0.00 0.00 3.85
259 260 2.036098 TCCCGGTTCTAGGCACGA 59.964 61.111 0.00 0.00 0.00 4.35
260 261 2.162338 TTGTCCCGGTTCTAGGCACG 62.162 60.000 0.00 0.00 0.00 5.34
261 262 0.035739 TTTGTCCCGGTTCTAGGCAC 59.964 55.000 0.00 0.00 0.00 5.01
262 263 0.988832 ATTTGTCCCGGTTCTAGGCA 59.011 50.000 0.00 0.00 0.00 4.75
263 264 1.379527 CATTTGTCCCGGTTCTAGGC 58.620 55.000 0.00 0.00 0.00 3.93
264 265 1.408266 CCCATTTGTCCCGGTTCTAGG 60.408 57.143 0.00 0.00 0.00 3.02
265 266 1.280998 ACCCATTTGTCCCGGTTCTAG 59.719 52.381 0.00 0.00 0.00 2.43
266 267 1.364269 ACCCATTTGTCCCGGTTCTA 58.636 50.000 0.00 0.00 0.00 2.10
267 268 0.481128 AACCCATTTGTCCCGGTTCT 59.519 50.000 0.00 0.00 33.22 3.01
268 269 0.601057 CAACCCATTTGTCCCGGTTC 59.399 55.000 0.00 0.00 36.45 3.62
269 270 0.186386 TCAACCCATTTGTCCCGGTT 59.814 50.000 0.00 0.00 39.18 4.44
270 271 0.186386 TTCAACCCATTTGTCCCGGT 59.814 50.000 0.00 0.00 36.49 5.28
271 272 1.333177 TTTCAACCCATTTGTCCCGG 58.667 50.000 0.00 0.00 36.49 5.73
272 273 2.560542 TCATTTCAACCCATTTGTCCCG 59.439 45.455 0.00 0.00 36.49 5.14
273 274 4.314961 GTTCATTTCAACCCATTTGTCCC 58.685 43.478 0.00 0.00 36.49 4.46
274 275 4.314961 GGTTCATTTCAACCCATTTGTCC 58.685 43.478 0.00 0.00 40.18 4.02
275 276 3.987220 CGGTTCATTTCAACCCATTTGTC 59.013 43.478 0.00 0.00 42.75 3.18
276 277 3.639094 TCGGTTCATTTCAACCCATTTGT 59.361 39.130 0.00 0.00 42.75 2.83
277 278 4.022416 TCTCGGTTCATTTCAACCCATTTG 60.022 41.667 0.00 0.00 42.75 2.32
278 279 4.022329 GTCTCGGTTCATTTCAACCCATTT 60.022 41.667 0.00 0.00 42.75 2.32
279 280 3.506067 GTCTCGGTTCATTTCAACCCATT 59.494 43.478 0.00 0.00 42.75 3.16
280 281 3.081804 GTCTCGGTTCATTTCAACCCAT 58.918 45.455 0.00 0.00 42.75 4.00
281 282 2.500229 GTCTCGGTTCATTTCAACCCA 58.500 47.619 0.00 0.00 42.75 4.51
282 283 1.810755 GGTCTCGGTTCATTTCAACCC 59.189 52.381 0.00 0.00 42.75 4.11
283 284 2.500229 TGGTCTCGGTTCATTTCAACC 58.500 47.619 0.00 0.00 42.34 3.77
284 285 4.475944 CATTGGTCTCGGTTCATTTCAAC 58.524 43.478 0.00 0.00 0.00 3.18
285 286 3.057596 GCATTGGTCTCGGTTCATTTCAA 60.058 43.478 0.00 0.00 0.00 2.69
286 287 2.487762 GCATTGGTCTCGGTTCATTTCA 59.512 45.455 0.00 0.00 0.00 2.69
287 288 2.159379 GGCATTGGTCTCGGTTCATTTC 60.159 50.000 0.00 0.00 0.00 2.17
288 289 1.818674 GGCATTGGTCTCGGTTCATTT 59.181 47.619 0.00 0.00 0.00 2.32
289 290 1.463674 GGCATTGGTCTCGGTTCATT 58.536 50.000 0.00 0.00 0.00 2.57
290 291 0.394352 GGGCATTGGTCTCGGTTCAT 60.394 55.000 0.00 0.00 0.00 2.57
291 292 1.002624 GGGCATTGGTCTCGGTTCA 60.003 57.895 0.00 0.00 0.00 3.18
292 293 1.002624 TGGGCATTGGTCTCGGTTC 60.003 57.895 0.00 0.00 0.00 3.62
293 294 1.303317 GTGGGCATTGGTCTCGGTT 60.303 57.895 0.00 0.00 0.00 4.44
294 295 2.351276 GTGGGCATTGGTCTCGGT 59.649 61.111 0.00 0.00 0.00 4.69
295 296 2.819595 CGTGGGCATTGGTCTCGG 60.820 66.667 0.00 0.00 0.00 4.63
296 297 1.811266 CTCGTGGGCATTGGTCTCG 60.811 63.158 0.00 0.00 0.00 4.04
297 298 1.450312 CCTCGTGGGCATTGGTCTC 60.450 63.158 0.00 0.00 0.00 3.36
298 299 2.671070 CCTCGTGGGCATTGGTCT 59.329 61.111 0.00 0.00 0.00 3.85
325 326 2.732619 GGTTCGTGAGCCTAGGGGG 61.733 68.421 11.72 0.00 38.36 5.40
326 327 2.901042 GGTTCGTGAGCCTAGGGG 59.099 66.667 11.72 0.00 0.00 4.79
327 328 2.494918 CGGTTCGTGAGCCTAGGG 59.505 66.667 11.72 0.00 0.00 3.53
328 329 2.494918 CCGGTTCGTGAGCCTAGG 59.505 66.667 3.67 3.67 0.00 3.02
329 330 2.050350 TCCCGGTTCGTGAGCCTAG 61.050 63.158 0.00 0.00 0.00 3.02
330 331 2.036098 TCCCGGTTCGTGAGCCTA 59.964 61.111 0.00 0.00 0.00 3.93
331 332 3.692406 GTCCCGGTTCGTGAGCCT 61.692 66.667 0.00 0.00 0.00 4.58
333 334 2.830704 ATTCGTCCCGGTTCGTGAGC 62.831 60.000 13.60 0.00 0.00 4.26
334 335 0.389426 AATTCGTCCCGGTTCGTGAG 60.389 55.000 13.60 0.00 0.00 3.51
335 336 0.388907 GAATTCGTCCCGGTTCGTGA 60.389 55.000 13.60 6.24 0.00 4.35
336 337 1.356527 GGAATTCGTCCCGGTTCGTG 61.357 60.000 13.60 0.00 41.10 4.35
337 338 1.079612 GGAATTCGTCCCGGTTCGT 60.080 57.895 13.60 0.00 41.10 3.85
338 339 3.790177 GGAATTCGTCCCGGTTCG 58.210 61.111 0.00 4.79 41.10 3.95
355 356 4.483243 CGAACCGGGACCCATGGG 62.483 72.222 30.23 30.23 42.03 4.00
356 357 3.712907 ACGAACCGGGACCCATGG 61.713 66.667 12.15 4.14 0.00 3.66
357 358 2.435938 CACGAACCGGGACCCATG 60.436 66.667 12.15 3.12 28.17 3.66
358 359 2.605295 TCACGAACCGGGACCCAT 60.605 61.111 12.15 0.00 32.99 4.00
363 364 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
364 365 3.946907 GTTCAGTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
368 369 0.942884 GTCCCGGTTCAGTCACGAAC 60.943 60.000 0.00 4.51 43.75 3.95
369 370 1.111116 AGTCCCGGTTCAGTCACGAA 61.111 55.000 0.00 0.00 0.00 3.85
370 371 0.250858 TAGTCCCGGTTCAGTCACGA 60.251 55.000 0.00 0.00 0.00 4.35
371 372 0.599558 TTAGTCCCGGTTCAGTCACG 59.400 55.000 0.00 0.00 0.00 4.35
372 373 2.618053 CATTAGTCCCGGTTCAGTCAC 58.382 52.381 0.00 0.00 0.00 3.67
373 374 1.553248 CCATTAGTCCCGGTTCAGTCA 59.447 52.381 0.00 0.00 0.00 3.41
374 375 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
375 376 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
376 377 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
377 378 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
378 379 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
379 380 1.607612 CAGCCCATTAGTCCCGGTT 59.392 57.895 0.00 0.00 0.00 4.44
380 381 2.375345 CCAGCCCATTAGTCCCGGT 61.375 63.158 0.00 0.00 0.00 5.28
381 382 2.510906 CCAGCCCATTAGTCCCGG 59.489 66.667 0.00 0.00 0.00 5.73
382 383 2.203209 GCCAGCCCATTAGTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
383 384 2.195956 GGCCAGCCCATTAGTCCC 59.804 66.667 0.00 0.00 0.00 4.46
384 385 1.152881 CTGGCCAGCCCATTAGTCC 60.153 63.158 22.33 0.00 44.33 3.85
385 386 1.152881 CCTGGCCAGCCCATTAGTC 60.153 63.158 28.39 0.00 44.33 2.59
386 387 3.010144 CCTGGCCAGCCCATTAGT 58.990 61.111 28.39 0.00 44.33 2.24
387 388 2.520260 GCCTGGCCAGCCCATTAG 60.520 66.667 28.39 12.86 44.33 1.73
398 399 3.068729 GCTTTCATTCGGGCCTGGC 62.069 63.158 12.87 11.05 0.00 4.85
399 400 2.418083 GGCTTTCATTCGGGCCTGG 61.418 63.158 12.87 0.00 41.20 4.45
400 401 2.418083 GGGCTTTCATTCGGGCCTG 61.418 63.158 4.71 4.71 43.62 4.85
401 402 2.043953 GGGCTTTCATTCGGGCCT 60.044 61.111 0.84 0.00 43.62 5.19
402 403 2.043953 AGGGCTTTCATTCGGGCC 60.044 61.111 0.00 0.00 44.57 5.80
403 404 1.250840 AACAGGGCTTTCATTCGGGC 61.251 55.000 0.00 0.00 0.00 6.13
404 405 1.256812 AAACAGGGCTTTCATTCGGG 58.743 50.000 0.00 0.00 0.00 5.14
405 406 2.558359 AGAAAACAGGGCTTTCATTCGG 59.442 45.455 0.64 0.00 35.62 4.30
406 407 3.923017 AGAAAACAGGGCTTTCATTCG 57.077 42.857 0.64 0.00 35.62 3.34
407 408 5.966742 AGTAGAAAACAGGGCTTTCATTC 57.033 39.130 0.64 0.00 35.62 2.67
408 409 6.431234 CACTAGTAGAAAACAGGGCTTTCATT 59.569 38.462 3.59 0.00 35.62 2.57
409 410 5.940470 CACTAGTAGAAAACAGGGCTTTCAT 59.060 40.000 3.59 0.00 35.62 2.57
410 411 5.305585 CACTAGTAGAAAACAGGGCTTTCA 58.694 41.667 3.59 0.00 35.62 2.69
411 412 4.695928 CCACTAGTAGAAAACAGGGCTTTC 59.304 45.833 3.59 0.00 33.75 2.62
412 413 4.349930 TCCACTAGTAGAAAACAGGGCTTT 59.650 41.667 3.59 0.00 0.00 3.51
413 414 3.908103 TCCACTAGTAGAAAACAGGGCTT 59.092 43.478 3.59 0.00 0.00 4.35
414 415 3.261137 GTCCACTAGTAGAAAACAGGGCT 59.739 47.826 3.59 0.00 0.00 5.19
415 416 3.597255 GTCCACTAGTAGAAAACAGGGC 58.403 50.000 3.59 0.00 0.00 5.19
416 417 3.055312 GGGTCCACTAGTAGAAAACAGGG 60.055 52.174 3.59 0.00 0.00 4.45
417 418 3.581332 TGGGTCCACTAGTAGAAAACAGG 59.419 47.826 3.59 0.00 0.00 4.00
418 419 4.527038 TCTGGGTCCACTAGTAGAAAACAG 59.473 45.833 3.59 3.67 0.00 3.16
419 420 4.282703 GTCTGGGTCCACTAGTAGAAAACA 59.717 45.833 3.59 0.00 0.00 2.83
420 421 4.322574 GGTCTGGGTCCACTAGTAGAAAAC 60.323 50.000 3.59 0.00 0.00 2.43
421 422 3.836562 GGTCTGGGTCCACTAGTAGAAAA 59.163 47.826 3.59 0.00 0.00 2.29
422 423 3.077088 AGGTCTGGGTCCACTAGTAGAAA 59.923 47.826 3.59 0.00 0.00 2.52
423 424 2.653366 AGGTCTGGGTCCACTAGTAGAA 59.347 50.000 3.59 0.00 0.00 2.10
424 425 2.241685 GAGGTCTGGGTCCACTAGTAGA 59.758 54.545 3.59 0.00 0.00 2.59
425 426 2.242708 AGAGGTCTGGGTCCACTAGTAG 59.757 54.545 0.00 0.00 0.00 2.57
426 427 2.285707 AGAGGTCTGGGTCCACTAGTA 58.714 52.381 0.00 0.00 0.00 1.82
427 428 1.085715 AGAGGTCTGGGTCCACTAGT 58.914 55.000 0.00 0.00 0.00 2.57
428 429 2.104170 GAAGAGGTCTGGGTCCACTAG 58.896 57.143 0.00 0.00 0.00 2.57
429 430 1.717077 AGAAGAGGTCTGGGTCCACTA 59.283 52.381 0.00 0.00 34.29 2.74
430 431 0.489567 AGAAGAGGTCTGGGTCCACT 59.510 55.000 0.00 0.00 34.29 4.00
431 432 1.826096 GTAGAAGAGGTCTGGGTCCAC 59.174 57.143 0.00 0.00 37.12 4.02
432 433 1.273098 GGTAGAAGAGGTCTGGGTCCA 60.273 57.143 0.00 0.00 37.12 4.02
433 434 1.487300 GGTAGAAGAGGTCTGGGTCC 58.513 60.000 0.00 0.00 37.12 4.46
437 438 2.239681 AGTGGGTAGAAGAGGTCTGG 57.760 55.000 0.00 0.00 37.12 3.86
447 448 4.057063 AGTTAGTGCCTTAGTGGGTAGA 57.943 45.455 0.00 0.00 36.00 2.59
449 450 6.879367 AATTAGTTAGTGCCTTAGTGGGTA 57.121 37.500 0.00 0.00 36.00 3.69
450 451 5.774102 AATTAGTTAGTGCCTTAGTGGGT 57.226 39.130 0.00 0.00 36.00 4.51
452 453 8.732746 AATGTAATTAGTTAGTGCCTTAGTGG 57.267 34.615 0.00 0.00 32.46 4.00
475 476 5.522641 AGTGAGAAGGCAATGGGATTTAAT 58.477 37.500 0.00 0.00 0.00 1.40
477 478 4.526970 GAGTGAGAAGGCAATGGGATTTA 58.473 43.478 0.00 0.00 0.00 1.40
478 479 3.359950 GAGTGAGAAGGCAATGGGATTT 58.640 45.455 0.00 0.00 0.00 2.17
480 481 1.213926 GGAGTGAGAAGGCAATGGGAT 59.786 52.381 0.00 0.00 0.00 3.85
504 509 4.079730 TCTGATCTAAGCAGAGTAGTGGGA 60.080 45.833 0.00 0.00 37.46 4.37
531 536 2.327940 GTGCGGTGTGTGCAACTC 59.672 61.111 0.00 0.00 45.23 3.01
548 553 2.881352 GAAGGAAGCTCGGACGCG 60.881 66.667 3.53 3.53 34.40 6.01
602 607 1.203149 GGGAGACGGGGTATACCTCAT 60.203 57.143 21.86 6.27 35.80 2.90
603 608 0.186873 GGGAGACGGGGTATACCTCA 59.813 60.000 21.86 0.00 35.80 3.86
617 622 0.749091 CGAAGCATGGCAATGGGAGA 60.749 55.000 2.54 0.00 34.09 3.71
636 641 0.448593 GATCGATCGACCCGGAGATC 59.551 60.000 22.06 18.47 39.72 2.75
685 690 6.058183 AGAATGGATTAAAACGGAGATGAGG 58.942 40.000 0.00 0.00 0.00 3.86
690 695 6.113411 GGAAGAGAATGGATTAAAACGGAGA 58.887 40.000 0.00 0.00 0.00 3.71
695 700 6.072119 ACCGTTGGAAGAGAATGGATTAAAAC 60.072 38.462 0.00 0.00 34.13 2.43
718 724 4.386867 TCTCATCGTGGATCTTAACACC 57.613 45.455 0.00 0.00 34.18 4.16
719 725 5.651530 TCTTCTCATCGTGGATCTTAACAC 58.348 41.667 0.00 0.00 0.00 3.32
720 726 5.914898 TCTTCTCATCGTGGATCTTAACA 57.085 39.130 0.00 0.00 0.00 2.41
722 728 6.183360 CCTCTTCTTCTCATCGTGGATCTTAA 60.183 42.308 0.00 0.00 0.00 1.85
724 730 4.099266 CCTCTTCTTCTCATCGTGGATCTT 59.901 45.833 0.00 0.00 0.00 2.40
730 736 7.708322 TGATTATTTCCTCTTCTTCTCATCGTG 59.292 37.037 0.00 0.00 0.00 4.35
732 738 8.547069 GTTGATTATTTCCTCTTCTTCTCATCG 58.453 37.037 0.00 0.00 0.00 3.84
734 740 9.393512 CAGTTGATTATTTCCTCTTCTTCTCAT 57.606 33.333 0.00 0.00 0.00 2.90
735 741 8.378565 ACAGTTGATTATTTCCTCTTCTTCTCA 58.621 33.333 0.00 0.00 0.00 3.27
771 777 3.128764 GGATTTTTCTTCGGTGATGGTCC 59.871 47.826 0.00 0.00 0.00 4.46
772 778 3.756434 TGGATTTTTCTTCGGTGATGGTC 59.244 43.478 0.00 0.00 0.00 4.02
776 782 2.755103 GCCTGGATTTTTCTTCGGTGAT 59.245 45.455 0.00 0.00 0.00 3.06
790 796 2.362369 CCTGTCGTGGAGCCTGGAT 61.362 63.158 0.00 0.00 0.00 3.41
866 872 3.207474 ACAAGCTAGCAAAAATCGCTG 57.793 42.857 18.83 2.36 40.73 5.18
875 881 6.885952 TTATAACACCAAACAAGCTAGCAA 57.114 33.333 18.83 0.00 0.00 3.91
888 895 3.093057 TGCCCAAGCATTATAACACCA 57.907 42.857 0.00 0.00 46.52 4.17
914 921 9.177608 CTACCAAAATCATTGATGGAAGTAAGA 57.822 33.333 10.97 0.00 36.75 2.10
931 938 6.313519 TCTCAATCTACAGCCTACCAAAAT 57.686 37.500 0.00 0.00 0.00 1.82
938 952 6.017026 CGATAGTGTTCTCAATCTACAGCCTA 60.017 42.308 0.00 0.00 0.00 3.93
960 974 3.144506 CTCCCTCAATTAATGCAGCGAT 58.855 45.455 0.00 0.00 0.00 4.58
1035 1051 2.127651 TCCCCAGGACAGGTTTTAGT 57.872 50.000 0.00 0.00 0.00 2.24
1038 1054 0.178961 GCTTCCCCAGGACAGGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
1077 1093 0.861837 CTTTGAAACGCTCGCACTCT 59.138 50.000 0.00 0.00 0.00 3.24
1082 1098 0.657368 CACACCTTTGAAACGCTCGC 60.657 55.000 0.00 0.00 0.00 5.03
1084 1100 0.657368 CGCACACCTTTGAAACGCTC 60.657 55.000 0.00 0.00 0.00 5.03
1114 1130 1.164411 AGCTCGTGAGTGAGAGACTG 58.836 55.000 0.00 0.00 38.28 3.51
1227 1246 1.423584 TGGCATCCTCCATGTCGTAT 58.576 50.000 0.00 0.00 40.38 3.06
1265 1284 4.384846 GCTTTGCATCTTTGTCATCAACAG 59.615 41.667 0.00 0.00 39.58 3.16
1351 1895 6.602009 TCTTGTATCTCTCTACCAATTCGACA 59.398 38.462 0.00 0.00 0.00 4.35
1390 2019 1.140852 CCTATCGCCCACCTCAATGAA 59.859 52.381 0.00 0.00 0.00 2.57
1457 2093 3.921104 AGAGCTCTAGGATCAATGGTGA 58.079 45.455 16.50 0.00 38.41 4.02
1659 2387 0.878416 CGAAGGCCCGACATTCAAAA 59.122 50.000 0.00 0.00 0.00 2.44
1722 2450 8.258708 GGTAGACCACTAACTTGACTATGAATT 58.741 37.037 0.00 0.00 33.87 2.17
1753 2481 2.106511 TGCTCCCTGCTTTAGTGTCTTT 59.893 45.455 0.00 0.00 43.37 2.52
1755 2483 1.352083 TGCTCCCTGCTTTAGTGTCT 58.648 50.000 0.00 0.00 43.37 3.41
1838 2570 6.861065 TTCAAGAAGTGTAAGTAGGCAAAG 57.139 37.500 0.00 0.00 0.00 2.77
1880 2907 4.718961 ACTCTCACATGCAAGTACCTTTT 58.281 39.130 0.00 0.00 0.00 2.27
1882 2909 4.283467 TGTACTCTCACATGCAAGTACCTT 59.717 41.667 17.32 0.00 42.09 3.50
1939 3054 9.005318 TGGTGGTAGGAAAATTTGTCCTATATA 57.995 33.333 16.73 5.74 46.84 0.86
1940 3055 7.878495 TGGTGGTAGGAAAATTTGTCCTATAT 58.122 34.615 16.73 0.00 46.84 0.86
1942 3057 6.147437 TGGTGGTAGGAAAATTTGTCCTAT 57.853 37.500 16.73 0.00 46.84 2.57
1943 3058 5.586155 TGGTGGTAGGAAAATTTGTCCTA 57.414 39.130 10.80 10.80 43.99 2.94
1945 3060 4.142469 CGATGGTGGTAGGAAAATTTGTCC 60.142 45.833 0.00 0.00 35.17 4.02
1946 3061 4.142469 CCGATGGTGGTAGGAAAATTTGTC 60.142 45.833 0.00 0.00 0.00 3.18
1947 3062 3.761752 CCGATGGTGGTAGGAAAATTTGT 59.238 43.478 0.00 0.00 0.00 2.83
1948 3063 3.761752 ACCGATGGTGGTAGGAAAATTTG 59.238 43.478 0.00 0.00 41.55 2.32
1949 3064 4.042271 ACCGATGGTGGTAGGAAAATTT 57.958 40.909 0.00 0.00 41.55 1.82
1950 3065 3.732048 ACCGATGGTGGTAGGAAAATT 57.268 42.857 0.00 0.00 41.55 1.82
1982 3387 9.642327 ACGTACATACAACATATAAAACTCACA 57.358 29.630 0.00 0.00 0.00 3.58
1992 3397 7.993101 ACAGTGACTACGTACATACAACATAT 58.007 34.615 0.00 0.00 0.00 1.78
2003 3408 3.423206 CGGTTTTGACAGTGACTACGTAC 59.577 47.826 0.00 0.00 0.00 3.67
2006 3411 2.724690 CTCGGTTTTGACAGTGACTACG 59.275 50.000 0.00 0.00 0.00 3.51
2007 3412 3.973657 TCTCGGTTTTGACAGTGACTAC 58.026 45.455 0.00 0.00 0.00 2.73
2008 3413 3.635373 ACTCTCGGTTTTGACAGTGACTA 59.365 43.478 0.00 0.00 0.00 2.59
2009 3414 2.431057 ACTCTCGGTTTTGACAGTGACT 59.569 45.455 0.00 0.00 0.00 3.41
2010 3415 2.822764 ACTCTCGGTTTTGACAGTGAC 58.177 47.619 0.00 0.00 0.00 3.67
2012 3417 4.307432 ACATACTCTCGGTTTTGACAGTG 58.693 43.478 0.00 0.00 0.00 3.66
2013 3418 4.602340 ACATACTCTCGGTTTTGACAGT 57.398 40.909 0.00 0.00 0.00 3.55
2014 3419 5.466819 TGTACATACTCTCGGTTTTGACAG 58.533 41.667 0.00 0.00 0.00 3.51
2015 3420 5.456548 TGTACATACTCTCGGTTTTGACA 57.543 39.130 0.00 0.00 0.00 3.58
2016 3421 5.867716 ACATGTACATACTCTCGGTTTTGAC 59.132 40.000 8.32 0.00 0.00 3.18
2017 3422 6.032956 ACATGTACATACTCTCGGTTTTGA 57.967 37.500 8.32 0.00 0.00 2.69
2018 3423 7.033791 ACTACATGTACATACTCTCGGTTTTG 58.966 38.462 8.32 0.00 0.00 2.44
2019 3424 7.166691 ACTACATGTACATACTCTCGGTTTT 57.833 36.000 8.32 0.00 0.00 2.43
2020 3425 6.770746 ACTACATGTACATACTCTCGGTTT 57.229 37.500 8.32 0.00 0.00 3.27
2022 3427 6.996879 ACATACTACATGTACATACTCTCGGT 59.003 38.462 8.32 3.06 33.45 4.69
2023 3428 7.436430 ACATACTACATGTACATACTCTCGG 57.564 40.000 8.32 0.00 33.45 4.63
2024 3429 9.205719 ACTACATACTACATGTACATACTCTCG 57.794 37.037 8.32 0.00 33.45 4.04
2136 3542 8.557450 AGGTGAGTTGTATATCCAAAATACCTT 58.443 33.333 5.88 0.00 33.08 3.50
2138 3544 7.255139 GCAGGTGAGTTGTATATCCAAAATACC 60.255 40.741 0.00 0.00 0.00 2.73
2145 3551 4.835284 TTGCAGGTGAGTTGTATATCCA 57.165 40.909 0.00 0.00 0.00 3.41
2146 3552 6.699575 AAATTGCAGGTGAGTTGTATATCC 57.300 37.500 0.00 0.00 0.00 2.59
2176 3582 9.578576 TGCCTAAGATATCTCAAAGCAAATTAT 57.421 29.630 5.51 0.00 0.00 1.28
2235 3641 9.013229 CCATATGCAACCATGTGTTAGTATTAT 57.987 33.333 0.00 0.00 38.48 1.28
2238 3644 5.769662 CCCATATGCAACCATGTGTTAGTAT 59.230 40.000 0.00 0.34 38.48 2.12
2239 3645 5.104318 TCCCATATGCAACCATGTGTTAGTA 60.104 40.000 0.00 0.00 38.48 1.82
2240 3646 3.953612 CCCATATGCAACCATGTGTTAGT 59.046 43.478 0.00 0.00 38.48 2.24
2241 3647 4.206375 TCCCATATGCAACCATGTGTTAG 58.794 43.478 0.00 0.00 38.48 2.34
2244 3650 2.824689 TCCCATATGCAACCATGTGT 57.175 45.000 0.00 0.00 38.48 3.72
2245 3651 3.189080 CGTATCCCATATGCAACCATGTG 59.811 47.826 0.00 0.00 39.47 3.21
2247 3653 3.673902 TCGTATCCCATATGCAACCATG 58.326 45.455 0.00 0.00 32.85 3.66
2248 3654 3.307691 CCTCGTATCCCATATGCAACCAT 60.308 47.826 0.00 0.00 35.44 3.55
2249 3655 2.038426 CCTCGTATCCCATATGCAACCA 59.962 50.000 0.00 0.00 0.00 3.67
2250 3656 2.301870 TCCTCGTATCCCATATGCAACC 59.698 50.000 0.00 0.00 0.00 3.77
2251 3657 3.678056 TCCTCGTATCCCATATGCAAC 57.322 47.619 0.00 0.00 0.00 4.17
2253 3659 6.560003 AATTATCCTCGTATCCCATATGCA 57.440 37.500 0.00 0.00 0.00 3.96
2254 3660 6.929606 GGTAATTATCCTCGTATCCCATATGC 59.070 42.308 0.00 0.00 0.00 3.14
2255 3661 7.442656 GGGTAATTATCCTCGTATCCCATATG 58.557 42.308 7.58 0.00 33.33 1.78
2261 3670 3.131755 CCGGGGTAATTATCCTCGTATCC 59.868 52.174 14.50 0.00 46.22 2.59
2264 3673 2.158325 ACCCGGGGTAATTATCCTCGTA 60.158 50.000 27.92 0.00 46.22 3.43
2275 3684 0.940452 TATCCTACCACCCGGGGTAA 59.060 55.000 27.92 6.65 42.63 2.85
2282 3691 8.834004 TGAACACTATATATATCCTACCACCC 57.166 38.462 0.00 0.00 0.00 4.61
2311 3720 9.547753 GCTCTTCATAACAGTATAGATGGAAAA 57.452 33.333 0.00 0.00 0.00 2.29
2312 3721 8.704668 TGCTCTTCATAACAGTATAGATGGAAA 58.295 33.333 0.00 0.00 0.00 3.13
2313 3722 8.250143 TGCTCTTCATAACAGTATAGATGGAA 57.750 34.615 0.00 0.00 0.00 3.53
2314 3723 7.839680 TGCTCTTCATAACAGTATAGATGGA 57.160 36.000 0.00 0.00 0.00 3.41
2315 3724 8.768955 GTTTGCTCTTCATAACAGTATAGATGG 58.231 37.037 0.00 0.00 0.00 3.51
2316 3725 9.317936 TGTTTGCTCTTCATAACAGTATAGATG 57.682 33.333 0.00 0.00 0.00 2.90
2317 3726 9.890629 TTGTTTGCTCTTCATAACAGTATAGAT 57.109 29.630 0.00 0.00 31.98 1.98
2318 3727 9.151471 GTTGTTTGCTCTTCATAACAGTATAGA 57.849 33.333 0.00 0.00 31.98 1.98
2319 3728 8.935844 TGTTGTTTGCTCTTCATAACAGTATAG 58.064 33.333 0.00 0.00 31.98 1.31
2320 3729 8.840833 TGTTGTTTGCTCTTCATAACAGTATA 57.159 30.769 0.00 0.00 31.98 1.47
2321 3730 7.744087 TGTTGTTTGCTCTTCATAACAGTAT 57.256 32.000 0.00 0.00 31.98 2.12
2322 3731 7.066404 TGTTGTTGTTTGCTCTTCATAACAGTA 59.934 33.333 0.00 0.00 31.98 2.74
2323 3732 6.127758 TGTTGTTGTTTGCTCTTCATAACAGT 60.128 34.615 0.00 0.00 31.98 3.55
2324 3733 6.264832 TGTTGTTGTTTGCTCTTCATAACAG 58.735 36.000 0.00 0.00 31.98 3.16
2325 3734 6.201226 TGTTGTTGTTTGCTCTTCATAACA 57.799 33.333 0.00 0.00 0.00 2.41
2326 3735 6.529829 TGTTGTTGTTGTTTGCTCTTCATAAC 59.470 34.615 0.00 0.00 0.00 1.89
2327 3736 6.625362 TGTTGTTGTTGTTTGCTCTTCATAA 58.375 32.000 0.00 0.00 0.00 1.90
2328 3737 6.201226 TGTTGTTGTTGTTTGCTCTTCATA 57.799 33.333 0.00 0.00 0.00 2.15
2329 3738 5.070770 TGTTGTTGTTGTTTGCTCTTCAT 57.929 34.783 0.00 0.00 0.00 2.57
2330 3739 4.511617 TGTTGTTGTTGTTTGCTCTTCA 57.488 36.364 0.00 0.00 0.00 3.02
2331 3740 4.683781 TGTTGTTGTTGTTGTTTGCTCTTC 59.316 37.500 0.00 0.00 0.00 2.87
2332 3741 4.626042 TGTTGTTGTTGTTGTTTGCTCTT 58.374 34.783 0.00 0.00 0.00 2.85
2333 3742 4.250116 TGTTGTTGTTGTTGTTTGCTCT 57.750 36.364 0.00 0.00 0.00 4.09
2334 3743 4.981389 TTGTTGTTGTTGTTGTTTGCTC 57.019 36.364 0.00 0.00 0.00 4.26
2335 3744 4.319405 GCTTTGTTGTTGTTGTTGTTTGCT 60.319 37.500 0.00 0.00 0.00 3.91
2336 3745 3.905416 GCTTTGTTGTTGTTGTTGTTTGC 59.095 39.130 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.