Multiple sequence alignment - TraesCS6D01G398200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G398200 chr6D 100.000 2543 0 0 1 2543 469551760 469554302 0.000000e+00 4697.0
1 TraesCS6D01G398200 chr6D 98.625 509 4 1 1 506 27189195 27188687 0.000000e+00 898.0
2 TraesCS6D01G398200 chr6D 98.051 513 6 1 1 509 463967990 463967478 0.000000e+00 889.0
3 TraesCS6D01G398200 chr6D 87.500 144 10 6 2204 2339 469539247 469539390 2.620000e-35 159.0
4 TraesCS6D01G398200 chr6D 98.684 76 1 0 2468 2543 469539510 469539585 4.410000e-28 135.0
5 TraesCS6D01G398200 chr6B 90.480 1145 64 19 506 1626 715687210 715688333 0.000000e+00 1469.0
6 TraesCS6D01G398200 chr6B 86.545 275 28 6 2266 2540 715682232 715682497 6.880000e-76 294.0
7 TraesCS6D01G398200 chr6B 82.061 262 29 11 2261 2511 715688558 715688812 9.220000e-50 207.0
8 TraesCS6D01G398200 chr6B 94.595 74 2 2 2468 2540 715699193 715699265 2.070000e-21 113.0
9 TraesCS6D01G398200 chr6B 86.000 100 10 3 2441 2540 715703362 715703457 1.240000e-18 104.0
10 TraesCS6D01G398200 chr6A 89.623 1166 57 29 506 1620 614597678 614598830 0.000000e+00 1424.0
11 TraesCS6D01G398200 chr6A 87.002 477 34 10 2069 2540 614599032 614599485 1.740000e-141 512.0
12 TraesCS6D01G398200 chr6A 78.674 347 32 18 2204 2540 614590473 614590787 2.580000e-45 193.0
13 TraesCS6D01G398200 chr6A 87.000 100 9 3 2441 2540 614613163 614613258 2.670000e-20 110.0
14 TraesCS6D01G398200 chr6A 92.208 77 4 2 2465 2540 614610203 614610278 9.620000e-20 108.0
15 TraesCS6D01G398200 chr7D 98.819 508 4 1 1 506 61772388 61772895 0.000000e+00 904.0
16 TraesCS6D01G398200 chr7D 98.619 507 6 1 1 506 619378068 619378574 0.000000e+00 896.0
17 TraesCS6D01G398200 chr7D 98.428 509 5 1 1 506 614740001 614740509 0.000000e+00 893.0
18 TraesCS6D01G398200 chr1D 98.819 508 4 1 1 506 485961679 485962186 0.000000e+00 904.0
19 TraesCS6D01G398200 chr1D 98.619 507 6 1 1 506 30955351 30954845 0.000000e+00 896.0
20 TraesCS6D01G398200 chr3D 98.617 506 7 0 1 506 586416881 586417386 0.000000e+00 896.0
21 TraesCS6D01G398200 chr3D 81.215 181 11 10 1909 2066 545965308 545965128 9.550000e-25 124.0
22 TraesCS6D01G398200 chr2D 98.431 510 5 1 1 507 617485923 617486432 0.000000e+00 894.0
23 TraesCS6D01G398200 chr5D 89.325 459 44 4 1087 1544 350980808 350980354 2.840000e-159 571.0
24 TraesCS6D01G398200 chr5D 86.938 467 56 4 1079 1544 350731393 350730931 1.040000e-143 520.0
25 TraesCS6D01G398200 chr5B 88.865 467 47 4 1079 1544 411786181 411785719 1.020000e-158 569.0
26 TraesCS6D01G398200 chr5B 93.636 110 6 1 1635 1743 245963780 245963889 2.020000e-36 163.0
27 TraesCS6D01G398200 chr5A 88.865 467 47 4 1079 1544 451393021 451392559 1.020000e-158 569.0
28 TraesCS6D01G398200 chr5A 87.912 91 11 0 1901 1991 355871336 355871246 9.620000e-20 108.0
29 TraesCS6D01G398200 chr1B 96.226 106 4 0 1635 1740 72876178 72876073 9.350000e-40 174.0
30 TraesCS6D01G398200 chr1B 94.340 106 6 0 1635 1740 72705855 72705750 2.020000e-36 163.0
31 TraesCS6D01G398200 chr1B 94.340 106 6 0 1635 1740 72765909 72765804 2.020000e-36 163.0
32 TraesCS6D01G398200 chr3B 95.238 105 5 0 1635 1739 457968697 457968801 1.560000e-37 167.0
33 TraesCS6D01G398200 chr3B 95.146 103 5 0 1635 1737 239252125 239252023 2.020000e-36 163.0
34 TraesCS6D01G398200 chr4B 92.373 118 6 3 1635 1751 612251108 612251223 5.630000e-37 165.0
35 TraesCS6D01G398200 chr4A 95.146 103 5 0 1635 1737 668587923 668587821 2.020000e-36 163.0
36 TraesCS6D01G398200 chr4A 95.146 103 5 0 1635 1737 668597146 668597044 2.020000e-36 163.0
37 TraesCS6D01G398200 chr3A 85.897 78 11 0 1908 1985 682356983 682356906 1.620000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G398200 chr6D 469551760 469554302 2542 False 4697 4697 100.0000 1 2543 1 chr6D.!!$F1 2542
1 TraesCS6D01G398200 chr6D 27188687 27189195 508 True 898 898 98.6250 1 506 1 chr6D.!!$R1 505
2 TraesCS6D01G398200 chr6D 463967478 463967990 512 True 889 889 98.0510 1 509 1 chr6D.!!$R2 508
3 TraesCS6D01G398200 chr6B 715687210 715688812 1602 False 838 1469 86.2705 506 2511 2 chr6B.!!$F4 2005
4 TraesCS6D01G398200 chr6A 614597678 614599485 1807 False 968 1424 88.3125 506 2540 2 chr6A.!!$F2 2034
5 TraesCS6D01G398200 chr7D 61772388 61772895 507 False 904 904 98.8190 1 506 1 chr7D.!!$F1 505
6 TraesCS6D01G398200 chr7D 619378068 619378574 506 False 896 896 98.6190 1 506 1 chr7D.!!$F3 505
7 TraesCS6D01G398200 chr7D 614740001 614740509 508 False 893 893 98.4280 1 506 1 chr7D.!!$F2 505
8 TraesCS6D01G398200 chr1D 485961679 485962186 507 False 904 904 98.8190 1 506 1 chr1D.!!$F1 505
9 TraesCS6D01G398200 chr1D 30954845 30955351 506 True 896 896 98.6190 1 506 1 chr1D.!!$R1 505
10 TraesCS6D01G398200 chr3D 586416881 586417386 505 False 896 896 98.6170 1 506 1 chr3D.!!$F1 505
11 TraesCS6D01G398200 chr2D 617485923 617486432 509 False 894 894 98.4310 1 507 1 chr2D.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 972 0.038892 ACGAACACACGCGTCCTATT 60.039 50.0 9.86 0.67 35.59 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2028 0.034896 CCACCTAAGCACAGTCCGTT 59.965 55.0 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 9.965748 ACTTCATCAAAATTAAAACAAAACACG 57.034 25.926 0.00 0.00 0.00 4.49
312 313 2.884179 TAAAGGTCCTCCGCCCCGAT 62.884 60.000 0.00 0.00 39.05 4.18
450 455 2.884639 GCATATTTAGTCCCGGTTGCAT 59.115 45.455 0.00 0.00 0.00 3.96
527 532 6.194796 TGCTAAGGCAAATCTTTATCACAC 57.805 37.500 0.00 0.00 46.36 3.82
528 533 5.709631 TGCTAAGGCAAATCTTTATCACACA 59.290 36.000 0.00 0.00 46.36 3.72
529 534 6.030228 GCTAAGGCAAATCTTTATCACACAC 58.970 40.000 0.00 0.00 38.54 3.82
570 575 2.161410 GCGAGTGATGTGGCATAACAAA 59.839 45.455 0.00 0.00 32.81 2.83
572 577 4.406069 CGAGTGATGTGGCATAACAAAAG 58.594 43.478 0.00 0.00 32.81 2.27
573 578 4.154015 CGAGTGATGTGGCATAACAAAAGA 59.846 41.667 0.00 0.00 32.81 2.52
574 579 5.376854 AGTGATGTGGCATAACAAAAGAC 57.623 39.130 0.00 0.00 32.81 3.01
582 594 8.586570 TGTGGCATAACAAAAGACAAATAAAG 57.413 30.769 0.00 0.00 0.00 1.85
715 727 6.923508 TCGCTCTTGACGAATCAAACATATAT 59.076 34.615 0.00 0.00 44.28 0.86
750 762 9.503399 TTCATGTAGTAGTATCTCATATGTCGT 57.497 33.333 1.90 0.00 0.00 4.34
751 763 9.152595 TCATGTAGTAGTATCTCATATGTCGTC 57.847 37.037 1.90 0.00 0.00 4.20
752 764 7.578169 TGTAGTAGTATCTCATATGTCGTCG 57.422 40.000 1.90 0.00 0.00 5.12
753 765 5.533533 AGTAGTATCTCATATGTCGTCGC 57.466 43.478 1.90 0.00 0.00 5.19
756 768 5.378292 AGTATCTCATATGTCGTCGCATT 57.622 39.130 1.90 0.00 0.00 3.56
770 807 2.610374 GTCGCATTGAATTAGCCCGTAA 59.390 45.455 0.00 0.00 0.00 3.18
772 809 2.612212 CGCATTGAATTAGCCCGTAACT 59.388 45.455 0.00 0.00 0.00 2.24
792 829 5.415415 ACTTAACGACACGCCTAGTATAG 57.585 43.478 0.00 0.00 38.80 1.31
793 830 4.878397 ACTTAACGACACGCCTAGTATAGT 59.122 41.667 0.00 0.00 36.82 2.12
794 831 6.049149 ACTTAACGACACGCCTAGTATAGTA 58.951 40.000 0.00 0.00 36.82 1.82
795 832 4.802876 AACGACACGCCTAGTATAGTAC 57.197 45.455 0.00 0.00 36.82 2.73
796 833 3.797039 ACGACACGCCTAGTATAGTACA 58.203 45.455 0.00 0.00 36.82 2.90
817 854 6.790285 ACAGTACGTACTAATTTTTGGGTG 57.210 37.500 26.95 13.61 34.13 4.61
914 951 1.341080 CCACCCCAAACAAGCAAGAT 58.659 50.000 0.00 0.00 0.00 2.40
928 965 0.179275 CAAGATCACGAACACACGCG 60.179 55.000 3.53 3.53 36.70 6.01
935 972 0.038892 ACGAACACACGCGTCCTATT 60.039 50.000 9.86 0.67 35.59 1.73
974 1012 2.486982 CCAGTGGTGCAATCTTTCTCTG 59.513 50.000 0.00 0.00 0.00 3.35
1230 1284 1.168407 TCAACGACTTCGACGAGGGT 61.168 55.000 11.93 8.43 43.02 4.34
1233 1287 2.623915 CGACTTCGACGAGGGTGGT 61.624 63.158 11.93 1.20 43.02 4.16
1402 1456 3.429141 TCGACGAGTGCGACTCCC 61.429 66.667 0.00 3.38 42.12 4.30
1593 1668 7.755591 TCTCTTGCTTATTTGAAGCTTATGTG 58.244 34.615 0.00 0.00 43.38 3.21
1596 1671 8.450964 TCTTGCTTATTTGAAGCTTATGTGTAC 58.549 33.333 0.00 0.00 43.38 2.90
1605 1686 1.730064 GCTTATGTGTACGTGTGGTGG 59.270 52.381 0.00 0.00 0.00 4.61
1606 1687 2.868839 GCTTATGTGTACGTGTGGTGGT 60.869 50.000 0.00 0.00 0.00 4.16
1620 1701 4.097286 GTGTGGTGGTTTTGATGTAGTGTT 59.903 41.667 0.00 0.00 0.00 3.32
1621 1702 4.097135 TGTGGTGGTTTTGATGTAGTGTTG 59.903 41.667 0.00 0.00 0.00 3.33
1622 1703 4.336993 GTGGTGGTTTTGATGTAGTGTTGA 59.663 41.667 0.00 0.00 0.00 3.18
1623 1704 4.950475 TGGTGGTTTTGATGTAGTGTTGAA 59.050 37.500 0.00 0.00 0.00 2.69
1624 1705 5.419155 TGGTGGTTTTGATGTAGTGTTGAAA 59.581 36.000 0.00 0.00 0.00 2.69
1626 1707 7.285629 TGGTGGTTTTGATGTAGTGTTGAAATA 59.714 33.333 0.00 0.00 0.00 1.40
1627 1708 7.593644 GGTGGTTTTGATGTAGTGTTGAAATAC 59.406 37.037 0.00 0.00 0.00 1.89
1628 1709 8.349983 GTGGTTTTGATGTAGTGTTGAAATACT 58.650 33.333 0.00 0.00 34.59 2.12
1629 1710 8.564574 TGGTTTTGATGTAGTGTTGAAATACTC 58.435 33.333 0.00 0.00 32.39 2.59
1631 1712 7.681939 TTTGATGTAGTGTTGAAATACTCCC 57.318 36.000 0.00 0.00 32.39 4.30
1632 1713 6.620877 TGATGTAGTGTTGAAATACTCCCT 57.379 37.500 0.00 0.00 32.39 4.20
1633 1714 6.640518 TGATGTAGTGTTGAAATACTCCCTC 58.359 40.000 0.00 0.00 32.39 4.30
1634 1715 5.068234 TGTAGTGTTGAAATACTCCCTCG 57.932 43.478 0.00 0.00 32.39 4.63
1635 1716 4.768448 TGTAGTGTTGAAATACTCCCTCGA 59.232 41.667 0.00 0.00 32.39 4.04
1636 1717 4.884668 AGTGTTGAAATACTCCCTCGAA 57.115 40.909 0.00 0.00 0.00 3.71
1639 1720 6.942976 AGTGTTGAAATACTCCCTCGAATTA 58.057 36.000 0.00 0.00 0.00 1.40
1640 1721 6.817140 AGTGTTGAAATACTCCCTCGAATTAC 59.183 38.462 0.00 0.00 0.00 1.89
1642 1723 7.333672 GTGTTGAAATACTCCCTCGAATTACTT 59.666 37.037 0.00 0.00 0.00 2.24
1643 1724 7.333423 TGTTGAAATACTCCCTCGAATTACTTG 59.667 37.037 0.00 0.00 0.00 3.16
1644 1725 6.942976 TGAAATACTCCCTCGAATTACTTGT 58.057 36.000 0.00 0.00 0.00 3.16
1645 1726 7.039882 TGAAATACTCCCTCGAATTACTTGTC 58.960 38.462 0.00 0.00 0.00 3.18
1646 1727 6.540438 AATACTCCCTCGAATTACTTGTCA 57.460 37.500 0.00 0.00 0.00 3.58
1647 1728 4.189639 ACTCCCTCGAATTACTTGTCAC 57.810 45.455 0.00 0.00 0.00 3.67
1648 1729 3.576982 ACTCCCTCGAATTACTTGTCACA 59.423 43.478 0.00 0.00 0.00 3.58
1649 1730 4.039973 ACTCCCTCGAATTACTTGTCACAA 59.960 41.667 0.00 0.00 0.00 3.33
1650 1731 4.963373 TCCCTCGAATTACTTGTCACAAA 58.037 39.130 0.00 0.00 0.00 2.83
1651 1732 5.369833 TCCCTCGAATTACTTGTCACAAAA 58.630 37.500 0.00 0.00 0.00 2.44
1652 1733 5.823570 TCCCTCGAATTACTTGTCACAAAAA 59.176 36.000 0.00 0.00 0.00 1.94
1653 1734 6.488683 TCCCTCGAATTACTTGTCACAAAAAT 59.511 34.615 0.00 0.00 0.00 1.82
1654 1735 6.582295 CCCTCGAATTACTTGTCACAAAAATG 59.418 38.462 0.00 0.00 0.00 2.32
1655 1736 7.359595 CCTCGAATTACTTGTCACAAAAATGA 58.640 34.615 0.00 0.00 0.00 2.57
1656 1737 7.860373 CCTCGAATTACTTGTCACAAAAATGAA 59.140 33.333 0.00 0.00 0.00 2.57
1657 1738 9.398170 CTCGAATTACTTGTCACAAAAATGAAT 57.602 29.630 0.00 0.00 0.00 2.57
1712 1793 5.663795 CAGATACATTCATTTCTGGGACG 57.336 43.478 0.00 0.00 33.54 4.79
1713 1794 5.359756 CAGATACATTCATTTCTGGGACGA 58.640 41.667 0.00 0.00 33.54 4.20
1714 1795 5.464722 CAGATACATTCATTTCTGGGACGAG 59.535 44.000 0.00 0.00 33.54 4.18
1715 1796 3.703001 ACATTCATTTCTGGGACGAGT 57.297 42.857 0.00 0.00 0.00 4.18
1716 1797 4.819105 ACATTCATTTCTGGGACGAGTA 57.181 40.909 0.00 0.00 0.00 2.59
1717 1798 5.160607 ACATTCATTTCTGGGACGAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
1718 1799 5.745227 ACATTCATTTCTGGGACGAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
1719 1800 6.180472 ACATTCATTTCTGGGACGAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
1720 1801 7.335627 ACATTCATTTCTGGGACGAGTAATTA 58.664 34.615 0.00 0.00 0.00 1.40
1721 1802 7.280205 ACATTCATTTCTGGGACGAGTAATTAC 59.720 37.037 7.57 7.57 0.00 1.89
1722 1803 5.345702 TCATTTCTGGGACGAGTAATTACG 58.654 41.667 9.91 2.10 0.00 3.18
1723 1804 5.125900 TCATTTCTGGGACGAGTAATTACGA 59.874 40.000 9.91 0.00 0.00 3.43
1724 1805 5.389859 TTTCTGGGACGAGTAATTACGAA 57.610 39.130 9.91 2.67 0.00 3.85
1725 1806 4.361451 TCTGGGACGAGTAATTACGAAC 57.639 45.455 9.91 5.43 0.00 3.95
1726 1807 3.103738 CTGGGACGAGTAATTACGAACG 58.896 50.000 21.47 21.47 0.00 3.95
1727 1808 2.159393 TGGGACGAGTAATTACGAACGG 60.159 50.000 24.36 12.23 0.00 4.44
1728 1809 2.097466 GGGACGAGTAATTACGAACGGA 59.903 50.000 24.36 0.00 0.00 4.69
1729 1810 3.357897 GGACGAGTAATTACGAACGGAG 58.642 50.000 24.36 11.33 0.00 4.63
1730 1811 3.357897 GACGAGTAATTACGAACGGAGG 58.642 50.000 24.36 9.26 0.00 4.30
1731 1812 2.098117 ACGAGTAATTACGAACGGAGGG 59.902 50.000 24.36 8.17 0.00 4.30
1732 1813 2.355756 CGAGTAATTACGAACGGAGGGA 59.644 50.000 17.99 0.00 0.00 4.20
1733 1814 3.547613 CGAGTAATTACGAACGGAGGGAG 60.548 52.174 17.99 0.00 0.00 4.30
1736 1817 5.136105 AGTAATTACGAACGGAGGGAGTAT 58.864 41.667 9.91 0.00 0.00 2.12
1745 1826 5.334724 CGAACGGAGGGAGTATAATGTAGTC 60.335 48.000 0.00 0.00 0.00 2.59
1751 1832 5.894653 AGGGAGTATAATGTAGTCTCCTCC 58.105 45.833 8.97 0.00 42.76 4.30
1774 1855 8.635765 TCCATGAATAAGTAAACTGCTCTTTT 57.364 30.769 0.00 0.00 0.00 2.27
1797 1878 6.431198 TTTTCGTAACAGCAAAAGACTTCT 57.569 33.333 0.00 0.00 0.00 2.85
1799 1880 4.689071 TCGTAACAGCAAAAGACTTCTCA 58.311 39.130 0.00 0.00 0.00 3.27
1801 1882 5.405571 TCGTAACAGCAAAAGACTTCTCATC 59.594 40.000 0.00 0.00 0.00 2.92
1820 1901 6.266786 TCTCATCGCTAATTACCAATCACCTA 59.733 38.462 0.00 0.00 0.00 3.08
1857 1938 4.851558 GCTAAAATTGCAAACGGAGTAGTG 59.148 41.667 1.71 0.00 45.00 2.74
1885 1968 1.252904 CCATCACACCAAGGGCCTTG 61.253 60.000 34.54 34.54 40.75 3.61
1904 1987 1.926561 GCTGGAATCGGCAATTTTCC 58.073 50.000 0.00 0.00 44.43 3.13
1907 1990 1.824230 TGGAATCGGCAATTTTCCCTG 59.176 47.619 3.89 0.00 38.51 4.45
1908 1991 2.099405 GGAATCGGCAATTTTCCCTGA 58.901 47.619 0.00 0.00 34.15 3.86
1909 1992 2.099756 GGAATCGGCAATTTTCCCTGAG 59.900 50.000 0.00 0.00 34.15 3.35
1912 1995 3.426787 TCGGCAATTTTCCCTGAGTAA 57.573 42.857 0.00 0.00 0.00 2.24
1916 1999 3.448660 GGCAATTTTCCCTGAGTAATGCT 59.551 43.478 0.00 0.00 0.00 3.79
1917 2000 4.644685 GGCAATTTTCCCTGAGTAATGCTA 59.355 41.667 0.00 0.00 0.00 3.49
1918 2001 5.450550 GGCAATTTTCCCTGAGTAATGCTAC 60.451 44.000 0.00 0.00 0.00 3.58
1919 2002 5.125417 GCAATTTTCCCTGAGTAATGCTACA 59.875 40.000 0.00 0.00 0.00 2.74
1920 2003 6.555315 CAATTTTCCCTGAGTAATGCTACAC 58.445 40.000 0.00 0.00 0.00 2.90
1921 2004 3.520290 TTCCCTGAGTAATGCTACACG 57.480 47.619 0.00 0.00 0.00 4.49
1922 2005 1.136305 TCCCTGAGTAATGCTACACGC 59.864 52.381 0.00 0.00 39.77 5.34
1930 2013 4.476361 TGCTACACGCACGAGATG 57.524 55.556 0.00 0.00 45.47 2.90
1931 2014 1.153842 TGCTACACGCACGAGATGG 60.154 57.895 0.00 0.00 45.47 3.51
1932 2015 1.153823 GCTACACGCACGAGATGGT 60.154 57.895 0.00 0.00 38.92 3.55
1933 2016 0.736325 GCTACACGCACGAGATGGTT 60.736 55.000 0.00 0.00 38.92 3.67
1934 2017 1.468565 GCTACACGCACGAGATGGTTA 60.469 52.381 0.00 0.00 38.92 2.85
1935 2018 2.798499 GCTACACGCACGAGATGGTTAT 60.798 50.000 0.00 0.00 38.92 1.89
1936 2019 2.380084 ACACGCACGAGATGGTTATT 57.620 45.000 0.00 0.00 0.00 1.40
1937 2020 3.513680 ACACGCACGAGATGGTTATTA 57.486 42.857 0.00 0.00 0.00 0.98
1938 2021 4.054780 ACACGCACGAGATGGTTATTAT 57.945 40.909 0.00 0.00 0.00 1.28
1939 2022 3.802139 ACACGCACGAGATGGTTATTATG 59.198 43.478 0.00 0.00 0.00 1.90
1940 2023 3.184379 CACGCACGAGATGGTTATTATGG 59.816 47.826 0.00 0.00 0.00 2.74
1941 2024 3.069016 ACGCACGAGATGGTTATTATGGA 59.931 43.478 0.00 0.00 0.00 3.41
1942 2025 4.245660 CGCACGAGATGGTTATTATGGAT 58.754 43.478 0.00 0.00 0.00 3.41
1943 2026 4.690748 CGCACGAGATGGTTATTATGGATT 59.309 41.667 0.00 0.00 0.00 3.01
1944 2027 5.163953 CGCACGAGATGGTTATTATGGATTC 60.164 44.000 0.00 0.00 0.00 2.52
1945 2028 5.700832 GCACGAGATGGTTATTATGGATTCA 59.299 40.000 0.00 0.00 0.00 2.57
1946 2029 6.204688 GCACGAGATGGTTATTATGGATTCAA 59.795 38.462 0.00 0.00 0.00 2.69
1947 2030 7.576236 CACGAGATGGTTATTATGGATTCAAC 58.424 38.462 0.00 0.00 0.00 3.18
1948 2031 6.423905 ACGAGATGGTTATTATGGATTCAACG 59.576 38.462 0.00 0.00 0.00 4.10
1949 2032 6.128553 CGAGATGGTTATTATGGATTCAACGG 60.129 42.308 0.00 0.00 0.00 4.44
1950 2033 6.837312 AGATGGTTATTATGGATTCAACGGA 58.163 36.000 0.00 0.00 0.00 4.69
1951 2034 6.710744 AGATGGTTATTATGGATTCAACGGAC 59.289 38.462 0.00 0.00 0.00 4.79
1952 2035 5.996644 TGGTTATTATGGATTCAACGGACT 58.003 37.500 0.00 0.00 0.00 3.85
1953 2036 5.820423 TGGTTATTATGGATTCAACGGACTG 59.180 40.000 0.00 0.00 0.00 3.51
1954 2037 5.820947 GGTTATTATGGATTCAACGGACTGT 59.179 40.000 0.00 0.00 0.00 3.55
1955 2038 6.238374 GGTTATTATGGATTCAACGGACTGTG 60.238 42.308 0.00 0.00 0.00 3.66
1956 2039 1.453155 ATGGATTCAACGGACTGTGC 58.547 50.000 0.00 0.00 0.00 4.57
1957 2040 0.396435 TGGATTCAACGGACTGTGCT 59.604 50.000 0.00 0.00 0.00 4.40
1958 2041 1.202758 TGGATTCAACGGACTGTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
1959 2042 2.037902 TGGATTCAACGGACTGTGCTTA 59.962 45.455 0.00 0.00 0.00 3.09
1960 2043 2.673368 GGATTCAACGGACTGTGCTTAG 59.327 50.000 0.00 0.00 0.00 2.18
1961 2044 2.163818 TTCAACGGACTGTGCTTAGG 57.836 50.000 0.00 0.00 0.00 2.69
1962 2045 1.045407 TCAACGGACTGTGCTTAGGT 58.955 50.000 0.00 0.00 0.00 3.08
1963 2046 1.148310 CAACGGACTGTGCTTAGGTG 58.852 55.000 0.00 0.00 0.00 4.00
1964 2047 0.034896 AACGGACTGTGCTTAGGTGG 59.965 55.000 0.00 0.00 0.00 4.61
1965 2048 0.830444 ACGGACTGTGCTTAGGTGGA 60.830 55.000 0.00 0.00 0.00 4.02
1966 2049 0.108615 CGGACTGTGCTTAGGTGGAG 60.109 60.000 0.00 0.00 0.00 3.86
1967 2050 0.250513 GGACTGTGCTTAGGTGGAGG 59.749 60.000 0.00 0.00 0.00 4.30
1968 2051 0.977395 GACTGTGCTTAGGTGGAGGT 59.023 55.000 0.00 0.00 0.00 3.85
1969 2052 1.348036 GACTGTGCTTAGGTGGAGGTT 59.652 52.381 0.00 0.00 0.00 3.50
1970 2053 1.774856 ACTGTGCTTAGGTGGAGGTTT 59.225 47.619 0.00 0.00 0.00 3.27
1971 2054 2.174854 ACTGTGCTTAGGTGGAGGTTTT 59.825 45.455 0.00 0.00 0.00 2.43
1972 2055 3.222603 CTGTGCTTAGGTGGAGGTTTTT 58.777 45.455 0.00 0.00 0.00 1.94
1973 2056 2.955660 TGTGCTTAGGTGGAGGTTTTTG 59.044 45.455 0.00 0.00 0.00 2.44
1974 2057 3.219281 GTGCTTAGGTGGAGGTTTTTGA 58.781 45.455 0.00 0.00 0.00 2.69
1975 2058 3.826729 GTGCTTAGGTGGAGGTTTTTGAT 59.173 43.478 0.00 0.00 0.00 2.57
1976 2059 4.280929 GTGCTTAGGTGGAGGTTTTTGATT 59.719 41.667 0.00 0.00 0.00 2.57
1977 2060 4.280677 TGCTTAGGTGGAGGTTTTTGATTG 59.719 41.667 0.00 0.00 0.00 2.67
1978 2061 4.321974 GCTTAGGTGGAGGTTTTTGATTGG 60.322 45.833 0.00 0.00 0.00 3.16
1979 2062 3.611025 AGGTGGAGGTTTTTGATTGGA 57.389 42.857 0.00 0.00 0.00 3.53
1980 2063 3.500343 AGGTGGAGGTTTTTGATTGGAG 58.500 45.455 0.00 0.00 0.00 3.86
1981 2064 3.140144 AGGTGGAGGTTTTTGATTGGAGA 59.860 43.478 0.00 0.00 0.00 3.71
1982 2065 4.089361 GGTGGAGGTTTTTGATTGGAGAT 58.911 43.478 0.00 0.00 0.00 2.75
1983 2066 4.528206 GGTGGAGGTTTTTGATTGGAGATT 59.472 41.667 0.00 0.00 0.00 2.40
1984 2067 5.714806 GGTGGAGGTTTTTGATTGGAGATTA 59.285 40.000 0.00 0.00 0.00 1.75
1985 2068 6.127619 GGTGGAGGTTTTTGATTGGAGATTAG 60.128 42.308 0.00 0.00 0.00 1.73
1986 2069 5.951747 TGGAGGTTTTTGATTGGAGATTAGG 59.048 40.000 0.00 0.00 0.00 2.69
1987 2070 6.187682 GGAGGTTTTTGATTGGAGATTAGGA 58.812 40.000 0.00 0.00 0.00 2.94
1988 2071 6.319911 GGAGGTTTTTGATTGGAGATTAGGAG 59.680 42.308 0.00 0.00 0.00 3.69
1989 2072 6.190587 AGGTTTTTGATTGGAGATTAGGAGG 58.809 40.000 0.00 0.00 0.00 4.30
1990 2073 5.360999 GGTTTTTGATTGGAGATTAGGAGGG 59.639 44.000 0.00 0.00 0.00 4.30
1991 2074 3.864789 TTGATTGGAGATTAGGAGGGC 57.135 47.619 0.00 0.00 0.00 5.19
1992 2075 1.694150 TGATTGGAGATTAGGAGGGCG 59.306 52.381 0.00 0.00 0.00 6.13
1993 2076 1.971357 GATTGGAGATTAGGAGGGCGA 59.029 52.381 0.00 0.00 0.00 5.54
1994 2077 1.414158 TTGGAGATTAGGAGGGCGAG 58.586 55.000 0.00 0.00 0.00 5.03
1995 2078 0.556258 TGGAGATTAGGAGGGCGAGA 59.444 55.000 0.00 0.00 0.00 4.04
1996 2079 1.063190 TGGAGATTAGGAGGGCGAGAA 60.063 52.381 0.00 0.00 0.00 2.87
1997 2080 2.040178 GGAGATTAGGAGGGCGAGAAA 58.960 52.381 0.00 0.00 0.00 2.52
1998 2081 2.434702 GGAGATTAGGAGGGCGAGAAAA 59.565 50.000 0.00 0.00 0.00 2.29
1999 2082 3.071747 GGAGATTAGGAGGGCGAGAAAAT 59.928 47.826 0.00 0.00 0.00 1.82
2000 2083 4.311606 GAGATTAGGAGGGCGAGAAAATC 58.688 47.826 0.00 0.00 0.00 2.17
2001 2084 3.711704 AGATTAGGAGGGCGAGAAAATCA 59.288 43.478 0.00 0.00 0.00 2.57
2002 2085 4.349342 AGATTAGGAGGGCGAGAAAATCAT 59.651 41.667 0.00 0.00 0.00 2.45
2003 2086 2.338577 AGGAGGGCGAGAAAATCATG 57.661 50.000 0.00 0.00 0.00 3.07
2004 2087 1.133976 AGGAGGGCGAGAAAATCATGG 60.134 52.381 0.00 0.00 0.00 3.66
2005 2088 1.312815 GAGGGCGAGAAAATCATGGG 58.687 55.000 0.00 0.00 0.00 4.00
2006 2089 0.106519 AGGGCGAGAAAATCATGGGG 60.107 55.000 0.00 0.00 0.00 4.96
2007 2090 0.106719 GGGCGAGAAAATCATGGGGA 60.107 55.000 0.00 0.00 0.00 4.81
2008 2091 1.312815 GGCGAGAAAATCATGGGGAG 58.687 55.000 0.00 0.00 0.00 4.30
2009 2092 1.134098 GGCGAGAAAATCATGGGGAGA 60.134 52.381 0.00 0.00 0.00 3.71
2010 2093 2.216898 GCGAGAAAATCATGGGGAGAG 58.783 52.381 0.00 0.00 0.00 3.20
2011 2094 2.158900 GCGAGAAAATCATGGGGAGAGA 60.159 50.000 0.00 0.00 0.00 3.10
2012 2095 3.495806 GCGAGAAAATCATGGGGAGAGAT 60.496 47.826 0.00 0.00 0.00 2.75
2013 2096 4.262635 GCGAGAAAATCATGGGGAGAGATA 60.263 45.833 0.00 0.00 0.00 1.98
2014 2097 5.570439 GCGAGAAAATCATGGGGAGAGATAT 60.570 44.000 0.00 0.00 0.00 1.63
2015 2098 6.471146 CGAGAAAATCATGGGGAGAGATATT 58.529 40.000 0.00 0.00 0.00 1.28
2016 2099 6.939163 CGAGAAAATCATGGGGAGAGATATTT 59.061 38.462 0.00 0.00 0.00 1.40
2017 2100 7.094890 CGAGAAAATCATGGGGAGAGATATTTG 60.095 40.741 0.00 0.00 0.00 2.32
2018 2101 7.589993 AGAAAATCATGGGGAGAGATATTTGT 58.410 34.615 0.00 0.00 0.00 2.83
2019 2102 8.063770 AGAAAATCATGGGGAGAGATATTTGTT 58.936 33.333 0.00 0.00 0.00 2.83
2020 2103 7.592885 AAATCATGGGGAGAGATATTTGTTG 57.407 36.000 0.00 0.00 0.00 3.33
2021 2104 5.974156 TCATGGGGAGAGATATTTGTTGA 57.026 39.130 0.00 0.00 0.00 3.18
2022 2105 6.520021 TCATGGGGAGAGATATTTGTTGAT 57.480 37.500 0.00 0.00 0.00 2.57
2023 2106 6.914665 TCATGGGGAGAGATATTTGTTGATT 58.085 36.000 0.00 0.00 0.00 2.57
2024 2107 7.000472 TCATGGGGAGAGATATTTGTTGATTC 59.000 38.462 0.00 0.00 0.00 2.52
2025 2108 5.694995 TGGGGAGAGATATTTGTTGATTCC 58.305 41.667 0.00 0.00 0.00 3.01
2026 2109 4.757149 GGGGAGAGATATTTGTTGATTCCG 59.243 45.833 0.00 0.00 0.00 4.30
2027 2110 5.368989 GGGAGAGATATTTGTTGATTCCGT 58.631 41.667 0.00 0.00 0.00 4.69
2028 2111 5.237344 GGGAGAGATATTTGTTGATTCCGTG 59.763 44.000 0.00 0.00 0.00 4.94
2029 2112 6.049149 GGAGAGATATTTGTTGATTCCGTGA 58.951 40.000 0.00 0.00 0.00 4.35
2030 2113 6.201806 GGAGAGATATTTGTTGATTCCGTGAG 59.798 42.308 0.00 0.00 0.00 3.51
2031 2114 6.878317 AGAGATATTTGTTGATTCCGTGAGA 58.122 36.000 0.00 0.00 0.00 3.27
2032 2115 7.504403 AGAGATATTTGTTGATTCCGTGAGAT 58.496 34.615 0.00 0.00 0.00 2.75
2033 2116 7.440556 AGAGATATTTGTTGATTCCGTGAGATG 59.559 37.037 0.00 0.00 0.00 2.90
2034 2117 3.829886 TTTGTTGATTCCGTGAGATGC 57.170 42.857 0.00 0.00 0.00 3.91
2035 2118 1.737838 TGTTGATTCCGTGAGATGCC 58.262 50.000 0.00 0.00 0.00 4.40
2036 2119 1.278985 TGTTGATTCCGTGAGATGCCT 59.721 47.619 0.00 0.00 0.00 4.75
2037 2120 1.667724 GTTGATTCCGTGAGATGCCTG 59.332 52.381 0.00 0.00 0.00 4.85
2038 2121 0.904649 TGATTCCGTGAGATGCCTGT 59.095 50.000 0.00 0.00 0.00 4.00
2039 2122 2.107366 TGATTCCGTGAGATGCCTGTA 58.893 47.619 0.00 0.00 0.00 2.74
2040 2123 2.499693 TGATTCCGTGAGATGCCTGTAA 59.500 45.455 0.00 0.00 0.00 2.41
2041 2124 2.380084 TTCCGTGAGATGCCTGTAAC 57.620 50.000 0.00 0.00 0.00 2.50
2042 2125 1.557099 TCCGTGAGATGCCTGTAACT 58.443 50.000 0.00 0.00 0.00 2.24
2043 2126 2.730382 TCCGTGAGATGCCTGTAACTA 58.270 47.619 0.00 0.00 0.00 2.24
2044 2127 3.296854 TCCGTGAGATGCCTGTAACTAT 58.703 45.455 0.00 0.00 0.00 2.12
2045 2128 3.318275 TCCGTGAGATGCCTGTAACTATC 59.682 47.826 0.00 0.00 0.00 2.08
2046 2129 3.553096 CCGTGAGATGCCTGTAACTATCC 60.553 52.174 0.00 0.00 0.00 2.59
2047 2130 3.643763 GTGAGATGCCTGTAACTATCCG 58.356 50.000 0.00 0.00 0.00 4.18
2048 2131 3.068307 GTGAGATGCCTGTAACTATCCGT 59.932 47.826 0.00 0.00 0.00 4.69
2049 2132 3.068165 TGAGATGCCTGTAACTATCCGTG 59.932 47.826 0.00 0.00 0.00 4.94
2050 2133 2.135933 GATGCCTGTAACTATCCGTGC 58.864 52.381 0.00 0.00 0.00 5.34
2051 2134 0.179121 TGCCTGTAACTATCCGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
2052 2135 0.179119 GCCTGTAACTATCCGTGCGT 60.179 55.000 0.00 0.00 0.00 5.24
2053 2136 1.836383 CCTGTAACTATCCGTGCGTC 58.164 55.000 0.00 0.00 0.00 5.19
2054 2137 1.404391 CCTGTAACTATCCGTGCGTCT 59.596 52.381 0.00 0.00 0.00 4.18
2055 2138 2.615447 CCTGTAACTATCCGTGCGTCTA 59.385 50.000 0.00 0.00 0.00 2.59
2056 2139 3.303857 CCTGTAACTATCCGTGCGTCTAG 60.304 52.174 0.00 0.00 0.00 2.43
2057 2140 2.615447 TGTAACTATCCGTGCGTCTAGG 59.385 50.000 0.00 0.00 0.00 3.02
2058 2141 2.048444 AACTATCCGTGCGTCTAGGA 57.952 50.000 0.00 0.00 38.56 2.94
2059 2142 2.273538 ACTATCCGTGCGTCTAGGAT 57.726 50.000 1.68 1.68 45.75 3.24
2060 2143 2.584236 ACTATCCGTGCGTCTAGGATT 58.416 47.619 1.32 0.00 41.63 3.01
2061 2144 2.957006 ACTATCCGTGCGTCTAGGATTT 59.043 45.455 1.32 0.00 41.63 2.17
2062 2145 2.981859 ATCCGTGCGTCTAGGATTTT 57.018 45.000 0.00 0.00 41.63 1.82
2063 2146 2.288961 TCCGTGCGTCTAGGATTTTC 57.711 50.000 0.00 0.00 0.00 2.29
2064 2147 0.921347 CCGTGCGTCTAGGATTTTCG 59.079 55.000 0.00 0.00 0.00 3.46
2065 2148 1.468565 CCGTGCGTCTAGGATTTTCGA 60.469 52.381 0.00 0.00 0.00 3.71
2066 2149 2.460918 CGTGCGTCTAGGATTTTCGAT 58.539 47.619 0.00 0.00 0.00 3.59
2067 2150 2.858344 CGTGCGTCTAGGATTTTCGATT 59.142 45.455 0.00 0.00 0.00 3.34
2068 2151 3.306166 CGTGCGTCTAGGATTTTCGATTT 59.694 43.478 0.00 0.00 0.00 2.17
2069 2152 4.201685 CGTGCGTCTAGGATTTTCGATTTT 60.202 41.667 0.00 0.00 0.00 1.82
2070 2153 5.256352 GTGCGTCTAGGATTTTCGATTTTC 58.744 41.667 0.00 0.00 0.00 2.29
2071 2154 4.331717 TGCGTCTAGGATTTTCGATTTTCC 59.668 41.667 0.00 0.00 0.00 3.13
2072 2155 4.260661 GCGTCTAGGATTTTCGATTTTCCC 60.261 45.833 4.84 0.00 0.00 3.97
2073 2156 4.873827 CGTCTAGGATTTTCGATTTTCCCA 59.126 41.667 4.84 0.00 0.00 4.37
2074 2157 5.353123 CGTCTAGGATTTTCGATTTTCCCAA 59.647 40.000 4.84 0.00 0.00 4.12
2075 2158 6.456988 CGTCTAGGATTTTCGATTTTCCCAAG 60.457 42.308 4.84 4.07 0.00 3.61
2076 2159 6.598064 GTCTAGGATTTTCGATTTTCCCAAGA 59.402 38.462 4.84 5.84 0.00 3.02
2077 2160 5.904362 AGGATTTTCGATTTTCCCAAGAG 57.096 39.130 4.84 0.00 0.00 2.85
2078 2161 4.158579 AGGATTTTCGATTTTCCCAAGAGC 59.841 41.667 4.84 0.00 0.00 4.09
2079 2162 3.934457 TTTTCGATTTTCCCAAGAGCC 57.066 42.857 0.00 0.00 0.00 4.70
2080 2163 2.879103 TTCGATTTTCCCAAGAGCCT 57.121 45.000 0.00 0.00 0.00 4.58
2110 2193 3.335579 ACCGAGTGCTTTTTATCAGGAC 58.664 45.455 0.00 0.00 32.96 3.85
2135 2218 2.096762 GGCAAACAAAAAGAATGCGAGC 60.097 45.455 0.00 0.00 37.88 5.03
2136 2219 2.539274 GCAAACAAAAAGAATGCGAGCA 59.461 40.909 0.00 0.00 0.00 4.26
2143 2226 0.107312 AAGAATGCGAGCATCAGCCT 60.107 50.000 11.26 4.14 43.56 4.58
2151 2234 2.774007 CGAGCATCAGCCTTAAAAACG 58.226 47.619 0.00 0.00 43.56 3.60
2162 2245 3.542485 GCCTTAAAAACGTGGCAAAAACG 60.542 43.478 7.41 0.00 44.34 3.60
2187 2271 1.078143 AACTCGGCAATGGAGAGGC 60.078 57.895 0.00 0.00 36.40 4.70
2191 2275 0.038166 TCGGCAATGGAGAGGCTTTT 59.962 50.000 0.00 0.00 0.00 2.27
2193 2277 1.549203 GGCAATGGAGAGGCTTTTCA 58.451 50.000 0.00 0.00 0.00 2.69
2196 2280 3.022406 GCAATGGAGAGGCTTTTCAGAT 58.978 45.455 0.00 0.00 0.00 2.90
2197 2281 3.181489 GCAATGGAGAGGCTTTTCAGATG 60.181 47.826 0.00 0.00 0.00 2.90
2198 2282 2.119801 TGGAGAGGCTTTTCAGATGC 57.880 50.000 0.00 0.00 0.00 3.91
2199 2283 1.012841 GGAGAGGCTTTTCAGATGCG 58.987 55.000 0.00 0.00 0.00 4.73
2200 2284 0.376502 GAGAGGCTTTTCAGATGCGC 59.623 55.000 0.00 0.00 0.00 6.09
2201 2285 0.321919 AGAGGCTTTTCAGATGCGCA 60.322 50.000 14.96 14.96 0.00 6.09
2202 2286 0.179179 GAGGCTTTTCAGATGCGCAC 60.179 55.000 14.90 7.11 0.00 5.34
2243 2330 0.615331 ACATTCGAGCCCAGTGACAT 59.385 50.000 0.00 0.00 0.00 3.06
2282 2369 3.454812 AGCCCAGTTACAGATTATTCCGT 59.545 43.478 0.00 0.00 0.00 4.69
2283 2370 3.808174 GCCCAGTTACAGATTATTCCGTC 59.192 47.826 0.00 0.00 0.00 4.79
2315 2402 1.299976 CACCTCCCAGCCCAGTTAC 59.700 63.158 0.00 0.00 0.00 2.50
2353 2440 3.624777 CCATAGAAGGGCTGAACAATGT 58.375 45.455 0.00 0.00 0.00 2.71
2354 2441 3.379372 CCATAGAAGGGCTGAACAATGTG 59.621 47.826 0.00 0.00 0.00 3.21
2355 2442 1.251251 AGAAGGGCTGAACAATGTGC 58.749 50.000 0.00 0.00 0.00 4.57
2356 2443 1.202976 AGAAGGGCTGAACAATGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
2357 2444 1.615392 GAAGGGCTGAACAATGTGCTT 59.385 47.619 0.00 0.00 0.00 3.91
2366 2453 2.869233 ACAATGTGCTTTGCTTTCGT 57.131 40.000 0.00 0.00 0.00 3.85
2460 2556 7.142680 TCGCCAAAATAAAAGTAGGTGAAAAG 58.857 34.615 0.00 0.00 33.19 2.27
2461 2557 7.013464 TCGCCAAAATAAAAGTAGGTGAAAAGA 59.987 33.333 0.00 0.00 33.19 2.52
2462 2558 7.326063 CGCCAAAATAAAAGTAGGTGAAAAGAG 59.674 37.037 0.00 0.00 0.00 2.85
2463 2559 7.598869 GCCAAAATAAAAGTAGGTGAAAAGAGG 59.401 37.037 0.00 0.00 0.00 3.69
2507 2604 2.091885 TCCCCCTGCCTTTTAATAGCTG 60.092 50.000 0.00 0.00 0.00 4.24
2508 2605 2.091885 CCCCCTGCCTTTTAATAGCTGA 60.092 50.000 0.00 0.00 0.00 4.26
2540 2637 2.208872 ACCATTTGAGCTACATCCCCT 58.791 47.619 0.00 0.00 0.00 4.79
2541 2638 2.582636 ACCATTTGAGCTACATCCCCTT 59.417 45.455 0.00 0.00 0.00 3.95
2542 2639 3.011708 ACCATTTGAGCTACATCCCCTTT 59.988 43.478 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
450 455 1.861982 AAGGCCTTTAGTCTCGGCTA 58.138 50.000 13.78 0.00 43.29 3.93
456 461 2.152016 GTTCGCAAAGGCCTTTAGTCT 58.848 47.619 29.94 5.49 36.38 3.24
509 514 5.882557 CCTAGTGTGTGATAAAGATTTGCCT 59.117 40.000 0.00 0.00 0.00 4.75
527 532 9.776158 CTCGCTAATTATGTAATACTCCTAGTG 57.224 37.037 0.00 0.00 0.00 2.74
528 533 9.517868 ACTCGCTAATTATGTAATACTCCTAGT 57.482 33.333 0.00 0.00 0.00 2.57
529 534 9.776158 CACTCGCTAATTATGTAATACTCCTAG 57.224 37.037 0.00 0.00 0.00 3.02
582 594 9.538508 TTCCTTTGTACTAGTTGACTTCTAAAC 57.461 33.333 0.00 0.00 0.00 2.01
670 682 6.546395 AGCGAACAAATATGAACTTGCTTAG 58.454 36.000 0.00 0.00 0.00 2.18
671 683 6.371548 AGAGCGAACAAATATGAACTTGCTTA 59.628 34.615 0.00 0.00 29.85 3.09
728 740 6.090493 GCGACGACATATGAGATACTACTACA 59.910 42.308 10.38 0.00 0.00 2.74
729 741 6.090493 TGCGACGACATATGAGATACTACTAC 59.910 42.308 10.38 0.00 0.00 2.73
730 742 6.161381 TGCGACGACATATGAGATACTACTA 58.839 40.000 10.38 0.00 0.00 1.82
735 747 5.154222 TCAATGCGACGACATATGAGATAC 58.846 41.667 10.38 0.00 0.00 2.24
736 748 5.371115 TCAATGCGACGACATATGAGATA 57.629 39.130 10.38 0.00 0.00 1.98
737 749 4.243007 TCAATGCGACGACATATGAGAT 57.757 40.909 10.38 0.00 0.00 2.75
738 750 3.708563 TCAATGCGACGACATATGAGA 57.291 42.857 10.38 0.00 0.00 3.27
739 751 4.979564 ATTCAATGCGACGACATATGAG 57.020 40.909 10.38 5.58 0.00 2.90
740 752 5.107491 GCTAATTCAATGCGACGACATATGA 60.107 40.000 10.38 6.15 0.00 2.15
741 753 5.075448 GCTAATTCAATGCGACGACATATG 58.925 41.667 0.00 0.00 0.00 1.78
744 756 2.287915 GGCTAATTCAATGCGACGACAT 59.712 45.455 0.00 0.00 0.00 3.06
746 758 1.003866 GGGCTAATTCAATGCGACGAC 60.004 52.381 0.00 0.00 0.00 4.34
747 759 1.295792 GGGCTAATTCAATGCGACGA 58.704 50.000 0.00 0.00 0.00 4.20
748 760 0.042188 CGGGCTAATTCAATGCGACG 60.042 55.000 0.00 0.00 0.00 5.12
749 761 1.014352 ACGGGCTAATTCAATGCGAC 58.986 50.000 0.00 0.00 0.00 5.19
750 762 2.605837 TACGGGCTAATTCAATGCGA 57.394 45.000 0.00 0.00 0.00 5.10
751 763 2.612212 AGTTACGGGCTAATTCAATGCG 59.388 45.455 0.00 0.00 0.00 4.73
752 764 4.632538 AAGTTACGGGCTAATTCAATGC 57.367 40.909 0.00 0.00 0.00 3.56
753 765 6.036300 TCGTTAAGTTACGGGCTAATTCAATG 59.964 38.462 0.00 0.00 41.67 2.82
756 768 4.864247 GTCGTTAAGTTACGGGCTAATTCA 59.136 41.667 0.00 0.00 41.67 2.57
770 807 4.878397 ACTATACTAGGCGTGTCGTTAAGT 59.122 41.667 0.00 0.00 0.00 2.24
772 809 5.815222 TGTACTATACTAGGCGTGTCGTTAA 59.185 40.000 0.00 0.00 0.00 2.01
793 830 6.368516 GCACCCAAAAATTAGTACGTACTGTA 59.631 38.462 33.23 22.49 37.10 2.74
794 831 5.179929 GCACCCAAAAATTAGTACGTACTGT 59.820 40.000 33.23 20.77 37.10 3.55
795 832 5.410439 AGCACCCAAAAATTAGTACGTACTG 59.590 40.000 33.23 17.82 37.10 2.74
796 833 5.554070 AGCACCCAAAAATTAGTACGTACT 58.446 37.500 29.62 29.62 40.24 2.73
914 951 1.784036 TAGGACGCGTGTGTTCGTGA 61.784 55.000 20.70 0.00 42.80 4.35
956 994 2.158449 CGTCAGAGAAAGATTGCACCAC 59.842 50.000 0.00 0.00 0.00 4.16
974 1012 0.802607 GTGTTGGCTCCTCGATCGTC 60.803 60.000 15.94 0.69 0.00 4.20
1263 1317 1.006102 CGAGTTGCGGTGGAAGACT 60.006 57.895 0.00 0.00 36.03 3.24
1593 1668 2.614983 ACATCAAAACCACCACACGTAC 59.385 45.455 0.00 0.00 0.00 3.67
1596 1671 2.875933 ACTACATCAAAACCACCACACG 59.124 45.455 0.00 0.00 0.00 4.49
1605 1686 8.021396 GGGAGTATTTCAACACTACATCAAAAC 58.979 37.037 0.00 0.00 0.00 2.43
1606 1687 7.942341 AGGGAGTATTTCAACACTACATCAAAA 59.058 33.333 0.00 0.00 0.00 2.44
1620 1701 6.942976 ACAAGTAATTCGAGGGAGTATTTCA 58.057 36.000 0.00 0.00 0.00 2.69
1621 1702 7.010275 GTGACAAGTAATTCGAGGGAGTATTTC 59.990 40.741 0.00 0.00 0.00 2.17
1622 1703 6.817140 GTGACAAGTAATTCGAGGGAGTATTT 59.183 38.462 0.00 0.00 0.00 1.40
1623 1704 6.070995 TGTGACAAGTAATTCGAGGGAGTATT 60.071 38.462 0.00 0.00 0.00 1.89
1624 1705 5.421056 TGTGACAAGTAATTCGAGGGAGTAT 59.579 40.000 0.00 0.00 0.00 2.12
1626 1707 3.576982 TGTGACAAGTAATTCGAGGGAGT 59.423 43.478 0.00 0.00 0.00 3.85
1627 1708 4.188247 TGTGACAAGTAATTCGAGGGAG 57.812 45.455 0.00 0.00 0.00 4.30
1628 1709 4.610605 TTGTGACAAGTAATTCGAGGGA 57.389 40.909 0.00 0.00 0.00 4.20
1629 1710 5.682943 TTTTGTGACAAGTAATTCGAGGG 57.317 39.130 0.00 0.00 0.00 4.30
1631 1712 8.781067 TTCATTTTTGTGACAAGTAATTCGAG 57.219 30.769 0.00 0.00 0.00 4.04
1690 1771 5.359756 TCGTCCCAGAAATGAATGTATCTG 58.640 41.667 0.00 0.00 39.16 2.90
1691 1772 5.129485 ACTCGTCCCAGAAATGAATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
1692 1773 5.360591 ACTCGTCCCAGAAATGAATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
1693 1774 5.359194 ACTCGTCCCAGAAATGAATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
1694 1775 4.819105 ACTCGTCCCAGAAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
1695 1776 3.703001 ACTCGTCCCAGAAATGAATGT 57.297 42.857 0.00 0.00 0.00 2.71
1696 1777 6.683974 AATTACTCGTCCCAGAAATGAATG 57.316 37.500 0.00 0.00 0.00 2.67
1697 1778 6.479001 CGTAATTACTCGTCCCAGAAATGAAT 59.521 38.462 13.56 0.00 0.00 2.57
1698 1779 5.808540 CGTAATTACTCGTCCCAGAAATGAA 59.191 40.000 13.56 0.00 0.00 2.57
1699 1780 5.125900 TCGTAATTACTCGTCCCAGAAATGA 59.874 40.000 13.56 0.00 0.00 2.57
1700 1781 5.345702 TCGTAATTACTCGTCCCAGAAATG 58.654 41.667 13.56 0.00 0.00 2.32
1701 1782 5.587388 TCGTAATTACTCGTCCCAGAAAT 57.413 39.130 13.56 0.00 0.00 2.17
1702 1783 5.163513 GTTCGTAATTACTCGTCCCAGAAA 58.836 41.667 13.56 0.00 0.00 2.52
1703 1784 4.672542 CGTTCGTAATTACTCGTCCCAGAA 60.673 45.833 13.56 4.50 0.00 3.02
1704 1785 3.181507 CGTTCGTAATTACTCGTCCCAGA 60.182 47.826 13.56 0.00 0.00 3.86
1705 1786 3.103738 CGTTCGTAATTACTCGTCCCAG 58.896 50.000 13.56 0.00 0.00 4.45
1706 1787 2.159393 CCGTTCGTAATTACTCGTCCCA 60.159 50.000 13.56 0.00 0.00 4.37
1707 1788 2.097466 TCCGTTCGTAATTACTCGTCCC 59.903 50.000 13.56 0.00 0.00 4.46
1708 1789 3.357897 CTCCGTTCGTAATTACTCGTCC 58.642 50.000 13.56 0.00 0.00 4.79
1709 1790 3.357897 CCTCCGTTCGTAATTACTCGTC 58.642 50.000 13.56 1.53 0.00 4.20
1710 1791 2.098117 CCCTCCGTTCGTAATTACTCGT 59.902 50.000 13.56 0.00 0.00 4.18
1711 1792 2.355756 TCCCTCCGTTCGTAATTACTCG 59.644 50.000 13.56 13.63 0.00 4.18
1712 1793 3.379688 ACTCCCTCCGTTCGTAATTACTC 59.620 47.826 13.56 3.72 0.00 2.59
1713 1794 3.359950 ACTCCCTCCGTTCGTAATTACT 58.640 45.455 13.56 0.00 0.00 2.24
1714 1795 3.790152 ACTCCCTCCGTTCGTAATTAC 57.210 47.619 5.47 5.47 0.00 1.89
1715 1796 7.231317 ACATTATACTCCCTCCGTTCGTAATTA 59.769 37.037 0.00 0.00 0.00 1.40
1716 1797 6.041296 ACATTATACTCCCTCCGTTCGTAATT 59.959 38.462 0.00 0.00 0.00 1.40
1717 1798 5.537674 ACATTATACTCCCTCCGTTCGTAAT 59.462 40.000 0.00 0.00 0.00 1.89
1718 1799 4.889409 ACATTATACTCCCTCCGTTCGTAA 59.111 41.667 0.00 0.00 0.00 3.18
1719 1800 4.464008 ACATTATACTCCCTCCGTTCGTA 58.536 43.478 0.00 0.00 0.00 3.43
1720 1801 3.294214 ACATTATACTCCCTCCGTTCGT 58.706 45.455 0.00 0.00 0.00 3.85
1721 1802 4.518211 ACTACATTATACTCCCTCCGTTCG 59.482 45.833 0.00 0.00 0.00 3.95
1722 1803 5.769162 AGACTACATTATACTCCCTCCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
1723 1804 5.703310 AGACTACATTATACTCCCTCCGTT 58.297 41.667 0.00 0.00 0.00 4.44
1724 1805 5.315348 GAGACTACATTATACTCCCTCCGT 58.685 45.833 0.00 0.00 0.00 4.69
1725 1806 4.701171 GGAGACTACATTATACTCCCTCCG 59.299 50.000 0.00 0.00 40.58 4.63
1726 1807 5.894653 AGGAGACTACATTATACTCCCTCC 58.105 45.833 0.00 0.00 45.53 4.30
1727 1808 5.947566 GGAGGAGACTACATTATACTCCCTC 59.052 48.000 0.00 0.00 45.53 4.30
1728 1809 5.894653 GGAGGAGACTACATTATACTCCCT 58.105 45.833 0.00 0.00 45.53 4.20
1745 1826 6.352516 AGCAGTTTACTTATTCATGGAGGAG 58.647 40.000 0.00 0.00 0.00 3.69
1774 1855 6.092944 TGAGAAGTCTTTTGCTGTTACGAAAA 59.907 34.615 0.00 0.00 0.00 2.29
1795 1876 5.070446 AGGTGATTGGTAATTAGCGATGAGA 59.930 40.000 19.76 3.66 31.08 3.27
1797 1878 5.290493 AGGTGATTGGTAATTAGCGATGA 57.710 39.130 19.76 10.53 31.08 2.92
1799 1880 8.567948 CAAAATAGGTGATTGGTAATTAGCGAT 58.432 33.333 15.74 15.74 31.08 4.58
1801 1882 7.703328 ACAAAATAGGTGATTGGTAATTAGCG 58.297 34.615 9.94 0.00 31.08 4.26
1820 1901 6.926272 TGCAATTTTAGCGAACCTAACAAAAT 59.074 30.769 0.00 0.00 35.80 1.82
1857 1938 1.317613 TGGTGTGATGGTCTTGCAAC 58.682 50.000 0.00 0.00 0.00 4.17
1885 1968 1.471501 GGGAAAATTGCCGATTCCAGC 60.472 52.381 7.89 0.00 43.56 4.85
1916 1999 3.513680 AATAACCATCTCGTGCGTGTA 57.486 42.857 0.00 0.00 0.00 2.90
1917 2000 2.380084 AATAACCATCTCGTGCGTGT 57.620 45.000 0.00 0.00 0.00 4.49
1918 2001 3.184379 CCATAATAACCATCTCGTGCGTG 59.816 47.826 0.00 0.00 0.00 5.34
1919 2002 3.069016 TCCATAATAACCATCTCGTGCGT 59.931 43.478 0.00 0.00 0.00 5.24
1920 2003 3.649073 TCCATAATAACCATCTCGTGCG 58.351 45.455 0.00 0.00 0.00 5.34
1921 2004 5.700832 TGAATCCATAATAACCATCTCGTGC 59.299 40.000 0.00 0.00 0.00 5.34
1922 2005 7.569408 CGTTGAATCCATAATAACCATCTCGTG 60.569 40.741 0.00 0.00 0.00 4.35
1923 2006 6.423905 CGTTGAATCCATAATAACCATCTCGT 59.576 38.462 0.00 0.00 0.00 4.18
1924 2007 6.128553 CCGTTGAATCCATAATAACCATCTCG 60.129 42.308 0.00 0.00 0.00 4.04
1925 2008 6.934645 TCCGTTGAATCCATAATAACCATCTC 59.065 38.462 0.00 0.00 0.00 2.75
1926 2009 6.710744 GTCCGTTGAATCCATAATAACCATCT 59.289 38.462 0.00 0.00 0.00 2.90
1927 2010 6.710744 AGTCCGTTGAATCCATAATAACCATC 59.289 38.462 0.00 0.00 0.00 3.51
1928 2011 6.486657 CAGTCCGTTGAATCCATAATAACCAT 59.513 38.462 0.00 0.00 0.00 3.55
1929 2012 5.820423 CAGTCCGTTGAATCCATAATAACCA 59.180 40.000 0.00 0.00 0.00 3.67
1930 2013 5.820947 ACAGTCCGTTGAATCCATAATAACC 59.179 40.000 0.00 0.00 0.00 2.85
1931 2014 6.715464 CACAGTCCGTTGAATCCATAATAAC 58.285 40.000 0.00 0.00 0.00 1.89
1932 2015 5.295787 GCACAGTCCGTTGAATCCATAATAA 59.704 40.000 0.00 0.00 0.00 1.40
1933 2016 4.814234 GCACAGTCCGTTGAATCCATAATA 59.186 41.667 0.00 0.00 0.00 0.98
1934 2017 3.627577 GCACAGTCCGTTGAATCCATAAT 59.372 43.478 0.00 0.00 0.00 1.28
1935 2018 3.006940 GCACAGTCCGTTGAATCCATAA 58.993 45.455 0.00 0.00 0.00 1.90
1936 2019 2.236146 AGCACAGTCCGTTGAATCCATA 59.764 45.455 0.00 0.00 0.00 2.74
1937 2020 1.003580 AGCACAGTCCGTTGAATCCAT 59.996 47.619 0.00 0.00 0.00 3.41
1938 2021 0.396435 AGCACAGTCCGTTGAATCCA 59.604 50.000 0.00 0.00 0.00 3.41
1939 2022 1.523758 AAGCACAGTCCGTTGAATCC 58.476 50.000 0.00 0.00 0.00 3.01
1940 2023 2.673368 CCTAAGCACAGTCCGTTGAATC 59.327 50.000 0.00 0.00 0.00 2.52
1941 2024 2.038557 ACCTAAGCACAGTCCGTTGAAT 59.961 45.455 0.00 0.00 0.00 2.57
1942 2025 1.414919 ACCTAAGCACAGTCCGTTGAA 59.585 47.619 0.00 0.00 0.00 2.69
1943 2026 1.045407 ACCTAAGCACAGTCCGTTGA 58.955 50.000 0.00 0.00 0.00 3.18
1944 2027 1.148310 CACCTAAGCACAGTCCGTTG 58.852 55.000 0.00 0.00 0.00 4.10
1945 2028 0.034896 CCACCTAAGCACAGTCCGTT 59.965 55.000 0.00 0.00 0.00 4.44
1946 2029 0.830444 TCCACCTAAGCACAGTCCGT 60.830 55.000 0.00 0.00 0.00 4.69
1947 2030 0.108615 CTCCACCTAAGCACAGTCCG 60.109 60.000 0.00 0.00 0.00 4.79
1948 2031 0.250513 CCTCCACCTAAGCACAGTCC 59.749 60.000 0.00 0.00 0.00 3.85
1949 2032 0.977395 ACCTCCACCTAAGCACAGTC 59.023 55.000 0.00 0.00 0.00 3.51
1950 2033 1.435256 AACCTCCACCTAAGCACAGT 58.565 50.000 0.00 0.00 0.00 3.55
1951 2034 2.568623 AAACCTCCACCTAAGCACAG 57.431 50.000 0.00 0.00 0.00 3.66
1952 2035 2.955660 CAAAAACCTCCACCTAAGCACA 59.044 45.455 0.00 0.00 0.00 4.57
1953 2036 3.219281 TCAAAAACCTCCACCTAAGCAC 58.781 45.455 0.00 0.00 0.00 4.40
1954 2037 3.586470 TCAAAAACCTCCACCTAAGCA 57.414 42.857 0.00 0.00 0.00 3.91
1955 2038 4.321974 CCAATCAAAAACCTCCACCTAAGC 60.322 45.833 0.00 0.00 0.00 3.09
1956 2039 5.076873 TCCAATCAAAAACCTCCACCTAAG 58.923 41.667 0.00 0.00 0.00 2.18
1957 2040 5.068215 TCCAATCAAAAACCTCCACCTAA 57.932 39.130 0.00 0.00 0.00 2.69
1958 2041 4.352595 TCTCCAATCAAAAACCTCCACCTA 59.647 41.667 0.00 0.00 0.00 3.08
1959 2042 3.140144 TCTCCAATCAAAAACCTCCACCT 59.860 43.478 0.00 0.00 0.00 4.00
1960 2043 3.496331 TCTCCAATCAAAAACCTCCACC 58.504 45.455 0.00 0.00 0.00 4.61
1961 2044 5.728637 AATCTCCAATCAAAAACCTCCAC 57.271 39.130 0.00 0.00 0.00 4.02
1962 2045 5.951747 CCTAATCTCCAATCAAAAACCTCCA 59.048 40.000 0.00 0.00 0.00 3.86
1963 2046 6.187682 TCCTAATCTCCAATCAAAAACCTCC 58.812 40.000 0.00 0.00 0.00 4.30
1964 2047 6.319911 CCTCCTAATCTCCAATCAAAAACCTC 59.680 42.308 0.00 0.00 0.00 3.85
1965 2048 6.190587 CCTCCTAATCTCCAATCAAAAACCT 58.809 40.000 0.00 0.00 0.00 3.50
1966 2049 5.360999 CCCTCCTAATCTCCAATCAAAAACC 59.639 44.000 0.00 0.00 0.00 3.27
1967 2050 5.163509 GCCCTCCTAATCTCCAATCAAAAAC 60.164 44.000 0.00 0.00 0.00 2.43
1968 2051 4.956075 GCCCTCCTAATCTCCAATCAAAAA 59.044 41.667 0.00 0.00 0.00 1.94
1969 2052 4.536765 GCCCTCCTAATCTCCAATCAAAA 58.463 43.478 0.00 0.00 0.00 2.44
1970 2053 3.433598 CGCCCTCCTAATCTCCAATCAAA 60.434 47.826 0.00 0.00 0.00 2.69
1971 2054 2.104792 CGCCCTCCTAATCTCCAATCAA 59.895 50.000 0.00 0.00 0.00 2.57
1972 2055 1.694150 CGCCCTCCTAATCTCCAATCA 59.306 52.381 0.00 0.00 0.00 2.57
1973 2056 1.971357 TCGCCCTCCTAATCTCCAATC 59.029 52.381 0.00 0.00 0.00 2.67
1974 2057 1.974236 CTCGCCCTCCTAATCTCCAAT 59.026 52.381 0.00 0.00 0.00 3.16
1975 2058 1.063190 TCTCGCCCTCCTAATCTCCAA 60.063 52.381 0.00 0.00 0.00 3.53
1976 2059 0.556258 TCTCGCCCTCCTAATCTCCA 59.444 55.000 0.00 0.00 0.00 3.86
1977 2060 1.705873 TTCTCGCCCTCCTAATCTCC 58.294 55.000 0.00 0.00 0.00 3.71
1978 2061 3.821421 TTTTCTCGCCCTCCTAATCTC 57.179 47.619 0.00 0.00 0.00 2.75
1979 2062 3.711704 TGATTTTCTCGCCCTCCTAATCT 59.288 43.478 0.00 0.00 0.00 2.40
1980 2063 4.073293 TGATTTTCTCGCCCTCCTAATC 57.927 45.455 0.00 0.00 0.00 1.75
1981 2064 4.392940 CATGATTTTCTCGCCCTCCTAAT 58.607 43.478 0.00 0.00 0.00 1.73
1982 2065 3.433598 CCATGATTTTCTCGCCCTCCTAA 60.434 47.826 0.00 0.00 0.00 2.69
1983 2066 2.104792 CCATGATTTTCTCGCCCTCCTA 59.895 50.000 0.00 0.00 0.00 2.94
1984 2067 1.133976 CCATGATTTTCTCGCCCTCCT 60.134 52.381 0.00 0.00 0.00 3.69
1985 2068 1.312815 CCATGATTTTCTCGCCCTCC 58.687 55.000 0.00 0.00 0.00 4.30
1986 2069 1.312815 CCCATGATTTTCTCGCCCTC 58.687 55.000 0.00 0.00 0.00 4.30
1987 2070 0.106519 CCCCATGATTTTCTCGCCCT 60.107 55.000 0.00 0.00 0.00 5.19
1988 2071 0.106719 TCCCCATGATTTTCTCGCCC 60.107 55.000 0.00 0.00 0.00 6.13
1989 2072 1.134098 TCTCCCCATGATTTTCTCGCC 60.134 52.381 0.00 0.00 0.00 5.54
1990 2073 2.158900 TCTCTCCCCATGATTTTCTCGC 60.159 50.000 0.00 0.00 0.00 5.03
1991 2074 3.827008 TCTCTCCCCATGATTTTCTCG 57.173 47.619 0.00 0.00 0.00 4.04
1992 2075 7.723172 ACAAATATCTCTCCCCATGATTTTCTC 59.277 37.037 0.00 0.00 0.00 2.87
1993 2076 7.589993 ACAAATATCTCTCCCCATGATTTTCT 58.410 34.615 0.00 0.00 0.00 2.52
1994 2077 7.830099 ACAAATATCTCTCCCCATGATTTTC 57.170 36.000 0.00 0.00 0.00 2.29
1995 2078 7.840716 TCAACAAATATCTCTCCCCATGATTTT 59.159 33.333 0.00 0.00 0.00 1.82
1996 2079 7.356680 TCAACAAATATCTCTCCCCATGATTT 58.643 34.615 0.00 0.00 0.00 2.17
1997 2080 6.914665 TCAACAAATATCTCTCCCCATGATT 58.085 36.000 0.00 0.00 0.00 2.57
1998 2081 6.520021 TCAACAAATATCTCTCCCCATGAT 57.480 37.500 0.00 0.00 0.00 2.45
1999 2082 5.974156 TCAACAAATATCTCTCCCCATGA 57.026 39.130 0.00 0.00 0.00 3.07
2000 2083 6.208204 GGAATCAACAAATATCTCTCCCCATG 59.792 42.308 0.00 0.00 0.00 3.66
2001 2084 6.310149 GGAATCAACAAATATCTCTCCCCAT 58.690 40.000 0.00 0.00 0.00 4.00
2002 2085 5.687441 CGGAATCAACAAATATCTCTCCCCA 60.687 44.000 0.00 0.00 0.00 4.96
2003 2086 4.757149 CGGAATCAACAAATATCTCTCCCC 59.243 45.833 0.00 0.00 0.00 4.81
2004 2087 5.237344 CACGGAATCAACAAATATCTCTCCC 59.763 44.000 0.00 0.00 0.00 4.30
2005 2088 6.049149 TCACGGAATCAACAAATATCTCTCC 58.951 40.000 0.00 0.00 0.00 3.71
2006 2089 6.980978 TCTCACGGAATCAACAAATATCTCTC 59.019 38.462 0.00 0.00 0.00 3.20
2007 2090 6.878317 TCTCACGGAATCAACAAATATCTCT 58.122 36.000 0.00 0.00 0.00 3.10
2008 2091 7.571026 CATCTCACGGAATCAACAAATATCTC 58.429 38.462 0.00 0.00 0.00 2.75
2009 2092 6.017605 GCATCTCACGGAATCAACAAATATCT 60.018 38.462 0.00 0.00 0.00 1.98
2010 2093 6.138761 GCATCTCACGGAATCAACAAATATC 58.861 40.000 0.00 0.00 0.00 1.63
2011 2094 5.009010 GGCATCTCACGGAATCAACAAATAT 59.991 40.000 0.00 0.00 0.00 1.28
2012 2095 4.335315 GGCATCTCACGGAATCAACAAATA 59.665 41.667 0.00 0.00 0.00 1.40
2013 2096 3.129287 GGCATCTCACGGAATCAACAAAT 59.871 43.478 0.00 0.00 0.00 2.32
2014 2097 2.487762 GGCATCTCACGGAATCAACAAA 59.512 45.455 0.00 0.00 0.00 2.83
2015 2098 2.083774 GGCATCTCACGGAATCAACAA 58.916 47.619 0.00 0.00 0.00 2.83
2016 2099 1.278985 AGGCATCTCACGGAATCAACA 59.721 47.619 0.00 0.00 0.00 3.33
2017 2100 1.667724 CAGGCATCTCACGGAATCAAC 59.332 52.381 0.00 0.00 0.00 3.18
2018 2101 1.278985 ACAGGCATCTCACGGAATCAA 59.721 47.619 0.00 0.00 0.00 2.57
2019 2102 0.904649 ACAGGCATCTCACGGAATCA 59.095 50.000 0.00 0.00 0.00 2.57
2020 2103 2.866762 GTTACAGGCATCTCACGGAATC 59.133 50.000 0.00 0.00 0.00 2.52
2021 2104 2.501723 AGTTACAGGCATCTCACGGAAT 59.498 45.455 0.00 0.00 0.00 3.01
2022 2105 1.899814 AGTTACAGGCATCTCACGGAA 59.100 47.619 0.00 0.00 0.00 4.30
2023 2106 1.557099 AGTTACAGGCATCTCACGGA 58.443 50.000 0.00 0.00 0.00 4.69
2024 2107 3.553096 GGATAGTTACAGGCATCTCACGG 60.553 52.174 0.00 0.00 0.00 4.94
2025 2108 3.643763 GGATAGTTACAGGCATCTCACG 58.356 50.000 0.00 0.00 0.00 4.35
2026 2109 3.068307 ACGGATAGTTACAGGCATCTCAC 59.932 47.826 0.00 0.00 0.00 3.51
2027 2110 3.068165 CACGGATAGTTACAGGCATCTCA 59.932 47.826 0.00 0.00 0.00 3.27
2028 2111 3.643763 CACGGATAGTTACAGGCATCTC 58.356 50.000 0.00 0.00 0.00 2.75
2029 2112 2.224066 GCACGGATAGTTACAGGCATCT 60.224 50.000 0.00 0.00 0.00 2.90
2030 2113 2.135933 GCACGGATAGTTACAGGCATC 58.864 52.381 0.00 0.00 0.00 3.91
2031 2114 1.538204 CGCACGGATAGTTACAGGCAT 60.538 52.381 0.00 0.00 0.00 4.40
2032 2115 0.179121 CGCACGGATAGTTACAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
2033 2116 0.179119 ACGCACGGATAGTTACAGGC 60.179 55.000 0.00 0.00 0.00 4.85
2034 2117 1.404391 AGACGCACGGATAGTTACAGG 59.596 52.381 0.00 0.00 0.00 4.00
2035 2118 2.846039 AGACGCACGGATAGTTACAG 57.154 50.000 0.00 0.00 0.00 2.74
2036 2119 2.615447 CCTAGACGCACGGATAGTTACA 59.385 50.000 0.00 0.00 0.00 2.41
2037 2120 2.874701 TCCTAGACGCACGGATAGTTAC 59.125 50.000 0.00 0.00 0.00 2.50
2038 2121 3.198409 TCCTAGACGCACGGATAGTTA 57.802 47.619 0.00 0.00 0.00 2.24
2039 2122 2.048444 TCCTAGACGCACGGATAGTT 57.952 50.000 0.00 0.00 0.00 2.24
2040 2123 2.273538 ATCCTAGACGCACGGATAGT 57.726 50.000 0.00 0.00 35.84 2.12
2041 2124 3.644884 AAATCCTAGACGCACGGATAG 57.355 47.619 0.00 0.00 36.56 2.08
2042 2125 3.549423 CGAAAATCCTAGACGCACGGATA 60.549 47.826 0.00 0.00 36.56 2.59
2043 2126 2.798499 CGAAAATCCTAGACGCACGGAT 60.798 50.000 0.00 0.00 39.15 4.18
2044 2127 1.468565 CGAAAATCCTAGACGCACGGA 60.469 52.381 0.00 0.00 0.00 4.69
2045 2128 0.921347 CGAAAATCCTAGACGCACGG 59.079 55.000 0.00 0.00 0.00 4.94
2046 2129 1.904144 TCGAAAATCCTAGACGCACG 58.096 50.000 0.00 0.00 0.00 5.34
2047 2130 4.859629 AAATCGAAAATCCTAGACGCAC 57.140 40.909 0.00 0.00 0.00 5.34
2048 2131 4.331717 GGAAAATCGAAAATCCTAGACGCA 59.668 41.667 6.51 0.00 0.00 5.24
2049 2132 4.260661 GGGAAAATCGAAAATCCTAGACGC 60.261 45.833 11.92 0.00 32.41 5.19
2050 2133 4.873827 TGGGAAAATCGAAAATCCTAGACG 59.126 41.667 11.92 0.00 32.41 4.18
2051 2134 6.598064 TCTTGGGAAAATCGAAAATCCTAGAC 59.402 38.462 11.92 0.00 32.41 2.59
2052 2135 6.717289 TCTTGGGAAAATCGAAAATCCTAGA 58.283 36.000 11.92 11.60 32.41 2.43
2053 2136 6.458888 GCTCTTGGGAAAATCGAAAATCCTAG 60.459 42.308 11.92 10.06 32.41 3.02
2054 2137 5.357032 GCTCTTGGGAAAATCGAAAATCCTA 59.643 40.000 11.92 5.07 32.41 2.94
2055 2138 4.158579 GCTCTTGGGAAAATCGAAAATCCT 59.841 41.667 11.92 0.00 32.41 3.24
2056 2139 4.424626 GCTCTTGGGAAAATCGAAAATCC 58.575 43.478 0.00 0.00 0.00 3.01
2057 2140 4.158579 AGGCTCTTGGGAAAATCGAAAATC 59.841 41.667 0.00 0.00 0.00 2.17
2058 2141 4.082026 CAGGCTCTTGGGAAAATCGAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
2059 2142 3.255642 CAGGCTCTTGGGAAAATCGAAAA 59.744 43.478 0.00 0.00 0.00 2.29
2060 2143 2.819608 CAGGCTCTTGGGAAAATCGAAA 59.180 45.455 0.00 0.00 0.00 3.46
2061 2144 2.436417 CAGGCTCTTGGGAAAATCGAA 58.564 47.619 0.00 0.00 0.00 3.71
2062 2145 1.340017 CCAGGCTCTTGGGAAAATCGA 60.340 52.381 0.00 0.00 34.46 3.59
2063 2146 1.098050 CCAGGCTCTTGGGAAAATCG 58.902 55.000 0.00 0.00 34.46 3.34
2064 2147 2.291217 ACTCCAGGCTCTTGGGAAAATC 60.291 50.000 0.00 0.00 38.81 2.17
2065 2148 1.713078 ACTCCAGGCTCTTGGGAAAAT 59.287 47.619 0.00 0.00 38.81 1.82
2066 2149 1.149101 ACTCCAGGCTCTTGGGAAAA 58.851 50.000 0.00 0.00 38.81 2.29
2067 2150 1.149101 AACTCCAGGCTCTTGGGAAA 58.851 50.000 0.00 0.00 38.81 3.13
2068 2151 1.149101 AAACTCCAGGCTCTTGGGAA 58.851 50.000 0.00 0.00 38.81 3.97
2069 2152 1.149101 AAAACTCCAGGCTCTTGGGA 58.851 50.000 0.00 0.00 38.81 4.37
2070 2153 2.437413 GTAAAACTCCAGGCTCTTGGG 58.563 52.381 0.00 0.00 38.81 4.12
2071 2154 2.437413 GGTAAAACTCCAGGCTCTTGG 58.563 52.381 0.00 0.00 39.70 3.61
2072 2155 2.076863 CGGTAAAACTCCAGGCTCTTG 58.923 52.381 0.00 0.00 0.00 3.02
2073 2156 1.975680 TCGGTAAAACTCCAGGCTCTT 59.024 47.619 0.00 0.00 0.00 2.85
2074 2157 1.550976 CTCGGTAAAACTCCAGGCTCT 59.449 52.381 0.00 0.00 0.00 4.09
2075 2158 1.275573 ACTCGGTAAAACTCCAGGCTC 59.724 52.381 0.00 0.00 0.00 4.70
2076 2159 1.002087 CACTCGGTAAAACTCCAGGCT 59.998 52.381 0.00 0.00 0.00 4.58
2077 2160 1.439679 CACTCGGTAAAACTCCAGGC 58.560 55.000 0.00 0.00 0.00 4.85
2078 2161 1.002087 AGCACTCGGTAAAACTCCAGG 59.998 52.381 0.00 0.00 0.00 4.45
2079 2162 2.457366 AGCACTCGGTAAAACTCCAG 57.543 50.000 0.00 0.00 0.00 3.86
2080 2163 2.922740 AAGCACTCGGTAAAACTCCA 57.077 45.000 0.00 0.00 0.00 3.86
2110 2193 3.606422 GCATTCTTTTTGTTTGCCAACG 58.394 40.909 0.00 0.00 35.40 4.10
2135 2218 2.595386 GCCACGTTTTTAAGGCTGATG 58.405 47.619 5.15 0.00 43.70 3.07
2151 2234 4.375706 CGAGTTCTACTACGTTTTTGCCAC 60.376 45.833 0.00 0.00 0.00 5.01
2162 2245 3.380637 TCTCCATTGCCGAGTTCTACTAC 59.619 47.826 0.00 0.00 0.00 2.73
2163 2246 3.628008 TCTCCATTGCCGAGTTCTACTA 58.372 45.455 0.00 0.00 0.00 1.82
2164 2247 2.428890 CTCTCCATTGCCGAGTTCTACT 59.571 50.000 0.00 0.00 0.00 2.57
2187 2271 2.314561 TTTCGTGCGCATCTGAAAAG 57.685 45.000 24.01 7.52 0.00 2.27
2212 2299 0.955428 TCGAATGTTGTGGAGGCTGC 60.955 55.000 0.00 0.00 0.00 5.25
2339 2426 1.342174 CAAAGCACATTGTTCAGCCCT 59.658 47.619 0.00 0.00 0.00 5.19
2340 2427 1.787012 CAAAGCACATTGTTCAGCCC 58.213 50.000 0.00 0.00 0.00 5.19
2342 2429 2.144482 AGCAAAGCACATTGTTCAGC 57.856 45.000 0.00 0.00 32.80 4.26
2344 2431 3.114809 CGAAAGCAAAGCACATTGTTCA 58.885 40.909 0.00 0.00 32.80 3.18
2353 2440 2.481104 CCCAAAAGACGAAAGCAAAGCA 60.481 45.455 0.00 0.00 0.00 3.91
2354 2441 2.127251 CCCAAAAGACGAAAGCAAAGC 58.873 47.619 0.00 0.00 0.00 3.51
2355 2442 3.550842 CCTCCCAAAAGACGAAAGCAAAG 60.551 47.826 0.00 0.00 0.00 2.77
2356 2443 2.360801 CCTCCCAAAAGACGAAAGCAAA 59.639 45.455 0.00 0.00 0.00 3.68
2357 2444 1.953686 CCTCCCAAAAGACGAAAGCAA 59.046 47.619 0.00 0.00 0.00 3.91
2366 2453 5.072741 CAGAAAATGAGACCTCCCAAAAGA 58.927 41.667 0.00 0.00 0.00 2.52
2415 2510 4.566004 CGAGATATTATTTTCCCCGCAGA 58.434 43.478 0.00 0.00 0.00 4.26
2450 2546 4.425772 TCTCCACATCCTCTTTTCACCTA 58.574 43.478 0.00 0.00 0.00 3.08
2460 2556 1.055040 CCTCCCATCTCCACATCCTC 58.945 60.000 0.00 0.00 0.00 3.71
2461 2557 0.344790 ACCTCCCATCTCCACATCCT 59.655 55.000 0.00 0.00 0.00 3.24
2462 2558 2.103153 TACCTCCCATCTCCACATCC 57.897 55.000 0.00 0.00 0.00 3.51
2463 2559 2.232452 CGATACCTCCCATCTCCACATC 59.768 54.545 0.00 0.00 0.00 3.06
2465 2561 1.216930 TCGATACCTCCCATCTCCACA 59.783 52.381 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.