Multiple sequence alignment - TraesCS6D01G397400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G397400 chr6D 100.000 3735 0 0 1 3735 469309279 469313013 0.000000e+00 6898.0
1 TraesCS6D01G397400 chr6D 98.130 2086 17 7 734 2818 400784512 400786576 0.000000e+00 3616.0
2 TraesCS6D01G397400 chr6D 97.517 1208 19 4 733 1932 81150543 81149339 0.000000e+00 2054.0
3 TraesCS6D01G397400 chr6D 92.226 283 17 1 448 725 455279757 455280039 2.700000e-106 396.0
4 TraesCS6D01G397400 chr6D 95.067 223 9 1 208 428 455271938 455272160 2.130000e-92 350.0
5 TraesCS6D01G397400 chr6D 89.759 166 14 1 286 448 429744905 429744740 3.780000e-50 209.0
6 TraesCS6D01G397400 chr6D 95.652 69 2 1 291 358 435549187 435549119 3.940000e-20 110.0
7 TraesCS6D01G397400 chr6D 100.000 42 0 0 1965 2006 81149277 81149236 1.110000e-10 78.7
8 TraesCS6D01G397400 chr3D 98.086 3030 28 12 734 3735 406153653 406150626 0.000000e+00 5247.0
9 TraesCS6D01G397400 chr3D 97.678 1292 11 7 1741 3031 66253710 66254983 0.000000e+00 2202.0
10 TraesCS6D01G397400 chr3D 97.844 1206 17 4 734 1932 595953694 595952491 0.000000e+00 2074.0
11 TraesCS6D01G397400 chr3D 97.837 1202 21 4 734 1932 114397630 114396431 0.000000e+00 2071.0
12 TraesCS6D01G397400 chr3D 96.098 692 15 2 3055 3735 595951075 595950385 0.000000e+00 1118.0
13 TraesCS6D01G397400 chr3D 94.483 725 15 8 3036 3735 66255400 66256124 0.000000e+00 1094.0
14 TraesCS6D01G397400 chr3D 95.296 659 6 8 3102 3735 406150512 406149854 0.000000e+00 1022.0
15 TraesCS6D01G397400 chr3D 100.000 44 0 0 1965 2008 406152317 406152274 8.600000e-12 82.4
16 TraesCS6D01G397400 chr5D 97.715 3020 38 9 727 3735 58672904 58669905 0.000000e+00 5166.0
17 TraesCS6D01G397400 chr5D 94.366 284 10 1 448 725 396434022 396433739 7.410000e-117 431.0
18 TraesCS6D01G397400 chr5D 94.306 281 10 1 448 722 409725021 409725301 3.450000e-115 425.0
19 TraesCS6D01G397400 chr5D 93.966 232 12 1 199 428 409721508 409721739 2.130000e-92 350.0
20 TraesCS6D01G397400 chr5D 93.886 229 12 1 202 428 396437576 396437348 9.930000e-91 344.0
21 TraesCS6D01G397400 chr5D 100.000 35 0 0 688 722 409725332 409725366 8.660000e-07 65.8
22 TraesCS6D01G397400 chr2D 99.067 2359 20 1 734 3092 114802129 114804485 0.000000e+00 4233.0
23 TraesCS6D01G397400 chr2D 97.958 1420 14 3 1741 3159 97605108 97606513 0.000000e+00 2447.0
24 TraesCS6D01G397400 chr2D 98.153 1191 16 3 734 1922 459830858 459832044 0.000000e+00 2073.0
25 TraesCS6D01G397400 chr2D 95.886 875 19 12 2008 2869 632023833 632022963 0.000000e+00 1400.0
26 TraesCS6D01G397400 chr2D 97.589 705 5 2 3043 3735 114804587 114805291 0.000000e+00 1197.0
27 TraesCS6D01G397400 chr2D 94.184 705 7 3 3043 3735 97606249 97606931 0.000000e+00 1044.0
28 TraesCS6D01G397400 chr2D 95.249 442 21 0 3033 3474 459832973 459833414 0.000000e+00 701.0
29 TraesCS6D01G397400 chr2D 95.597 318 3 1 3429 3735 459833421 459833738 2.000000e-137 499.0
30 TraesCS6D01G397400 chr2D 97.101 69 1 1 2895 2963 97606446 97606513 8.480000e-22 115.0
31 TraesCS6D01G397400 chr2D 95.652 69 2 1 2895 2963 114804784 114804851 3.940000e-20 110.0
32 TraesCS6D01G397400 chr2D 92.754 69 4 1 2895 2963 459833179 459833246 8.540000e-17 99.0
33 TraesCS6D01G397400 chr2D 98.039 51 0 1 2895 2945 114804436 114804485 1.850000e-13 87.9
34 TraesCS6D01G397400 chr7D 95.100 1694 43 24 1628 3306 510434262 510432594 0.000000e+00 2632.0
35 TraesCS6D01G397400 chr7D 97.167 1200 26 6 734 1932 370966230 370965038 0.000000e+00 2021.0
36 TraesCS6D01G397400 chr7D 94.854 991 22 10 2751 3735 510433083 510432116 0.000000e+00 1520.0
37 TraesCS6D01G397400 chr7D 94.268 471 16 1 3051 3510 370962053 370961583 0.000000e+00 710.0
38 TraesCS6D01G397400 chr7D 98.485 198 2 1 3538 3735 370961470 370961274 7.680000e-92 348.0
39 TraesCS6D01G397400 chr7D 83.784 222 22 7 518 729 161469297 161469080 8.180000e-47 198.0
40 TraesCS6D01G397400 chr4D 98.680 1061 11 2 734 1793 469101972 469103030 0.000000e+00 1879.0
41 TraesCS6D01G397400 chr4D 91.552 1089 63 20 2008 3073 414634907 414633825 0.000000e+00 1474.0
42 TraesCS6D01G397400 chr7A 94.020 1204 55 7 734 1932 732102922 732101731 0.000000e+00 1808.0
43 TraesCS6D01G397400 chr7A 85.116 215 21 7 518 725 471569582 471569792 3.780000e-50 209.0
44 TraesCS6D01G397400 chrUn 93.645 598 5 2 3149 3735 439908888 439909463 0.000000e+00 863.0
45 TraesCS6D01G397400 chrUn 96.703 182 6 0 247 428 137775484 137775665 1.690000e-78 303.0
46 TraesCS6D01G397400 chr4B 92.606 284 15 2 448 725 582355612 582355895 1.620000e-108 403.0
47 TraesCS6D01G397400 chr5B 82.898 421 30 17 3130 3517 74641065 74641476 1.280000e-89 340.0
48 TraesCS6D01G397400 chr7B 80.679 471 38 21 3071 3517 598614499 598614058 2.170000e-82 316.0
49 TraesCS6D01G397400 chr1A 85.397 315 25 4 98 391 12995661 12995975 1.300000e-79 307.0
50 TraesCS6D01G397400 chr5A 96.703 182 6 0 247 428 472477046 472477227 1.690000e-78 303.0
51 TraesCS6D01G397400 chr5A 96.970 66 1 1 291 355 324963693 324963758 3.940000e-20 110.0
52 TraesCS6D01G397400 chr4A 85.000 220 21 6 518 729 395040180 395039965 2.920000e-51 213.0
53 TraesCS6D01G397400 chr4A 84.091 220 23 7 518 729 625645807 625645592 6.330000e-48 202.0
54 TraesCS6D01G397400 chr4A 88.793 116 4 3 3396 3510 692367253 692367360 2.340000e-27 134.0
55 TraesCS6D01G397400 chr2A 90.667 75 6 1 2895 2969 624982843 624982916 8.540000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G397400 chr6D 469309279 469313013 3734 False 6898.000000 6898 100.000000 1 3735 1 chr6D.!!$F4 3734
1 TraesCS6D01G397400 chr6D 400784512 400786576 2064 False 3616.000000 3616 98.130000 734 2818 1 chr6D.!!$F1 2084
2 TraesCS6D01G397400 chr6D 81149236 81150543 1307 True 1066.350000 2054 98.758500 733 2006 2 chr6D.!!$R3 1273
3 TraesCS6D01G397400 chr3D 406149854 406153653 3799 True 2117.133333 5247 97.794000 734 3735 3 chr3D.!!$R2 3001
4 TraesCS6D01G397400 chr3D 114396431 114397630 1199 True 2071.000000 2071 97.837000 734 1932 1 chr3D.!!$R1 1198
5 TraesCS6D01G397400 chr3D 66253710 66256124 2414 False 1648.000000 2202 96.080500 1741 3735 2 chr3D.!!$F1 1994
6 TraesCS6D01G397400 chr3D 595950385 595953694 3309 True 1596.000000 2074 96.971000 734 3735 2 chr3D.!!$R3 3001
7 TraesCS6D01G397400 chr5D 58669905 58672904 2999 True 5166.000000 5166 97.715000 727 3735 1 chr5D.!!$R1 3008
8 TraesCS6D01G397400 chr5D 396433739 396437576 3837 True 387.500000 431 94.126000 202 725 2 chr5D.!!$R2 523
9 TraesCS6D01G397400 chr5D 409721508 409725366 3858 False 280.266667 425 96.090667 199 722 3 chr5D.!!$F1 523
10 TraesCS6D01G397400 chr2D 114802129 114805291 3162 False 1406.975000 4233 97.586750 734 3735 4 chr2D.!!$F2 3001
11 TraesCS6D01G397400 chr2D 632022963 632023833 870 True 1400.000000 1400 95.886000 2008 2869 1 chr2D.!!$R1 861
12 TraesCS6D01G397400 chr2D 97605108 97606931 1823 False 1202.000000 2447 96.414333 1741 3735 3 chr2D.!!$F1 1994
13 TraesCS6D01G397400 chr2D 459830858 459833738 2880 False 843.000000 2073 95.438250 734 3735 4 chr2D.!!$F3 3001
14 TraesCS6D01G397400 chr7D 510432116 510434262 2146 True 2076.000000 2632 94.977000 1628 3735 2 chr7D.!!$R3 2107
15 TraesCS6D01G397400 chr7D 370961274 370966230 4956 True 1026.333333 2021 96.640000 734 3735 3 chr7D.!!$R2 3001
16 TraesCS6D01G397400 chr4D 469101972 469103030 1058 False 1879.000000 1879 98.680000 734 1793 1 chr4D.!!$F1 1059
17 TraesCS6D01G397400 chr4D 414633825 414634907 1082 True 1474.000000 1474 91.552000 2008 3073 1 chr4D.!!$R1 1065
18 TraesCS6D01G397400 chr7A 732101731 732102922 1191 True 1808.000000 1808 94.020000 734 1932 1 chr7A.!!$R1 1198
19 TraesCS6D01G397400 chrUn 439908888 439909463 575 False 863.000000 863 93.645000 3149 3735 1 chrUn.!!$F2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.029567 CGGCTCACGTATCTGGACTC 59.970 60.0 0.00 0.00 37.93 3.36 F
517 520 0.033011 ATCAGGTCGAGGCCTACTGT 60.033 55.0 4.42 0.85 37.04 3.55 F
575 578 0.107459 GACCTCCTTCCCATCACAGC 60.107 60.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 1307 2.557056 CTCGATTGTAGCCGGGATCTAA 59.443 50.000 2.18 0.0 0.00 2.10 R
2485 5227 7.506938 TCAACTTTTCCTTCTCCTTCAAATGAT 59.493 33.333 0.00 0.0 0.00 2.45 R
3092 6523 7.147408 GGCATCCAGGATAACCTAATATGATCT 60.147 40.741 0.00 0.0 45.94 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.735478 CACTCGTACCCGCGCAAA 60.735 61.111 8.75 0.00 0.00 3.68
26 27 2.431942 ACTCGTACCCGCGCAAAG 60.432 61.111 8.75 0.00 0.00 2.77
27 28 3.849953 CTCGTACCCGCGCAAAGC 61.850 66.667 8.75 0.00 43.95 3.51
38 39 2.551270 GCAAAGCGGACGACAGTG 59.449 61.111 0.00 0.00 0.00 3.66
39 40 2.551270 CAAAGCGGACGACAGTGC 59.449 61.111 0.00 0.00 35.18 4.40
45 46 4.664677 GGACGACAGTGCGGCACT 62.665 66.667 28.90 28.90 46.51 4.40
57 58 2.436115 GGCACTGGCGGTAGGAAC 60.436 66.667 0.00 0.00 42.47 3.62
58 59 2.813908 GCACTGGCGGTAGGAACG 60.814 66.667 0.00 0.00 0.00 3.95
59 60 2.654877 CACTGGCGGTAGGAACGT 59.345 61.111 0.00 0.00 0.00 3.99
60 61 1.445582 CACTGGCGGTAGGAACGTC 60.446 63.158 0.00 0.00 36.31 4.34
61 62 2.183555 CTGGCGGTAGGAACGTCC 59.816 66.667 0.00 0.00 34.56 4.79
62 63 2.601067 TGGCGGTAGGAACGTCCA 60.601 61.111 6.78 0.00 39.61 4.02
63 64 2.183555 GGCGGTAGGAACGTCCAG 59.816 66.667 6.78 0.00 39.61 3.86
64 65 2.508663 GCGGTAGGAACGTCCAGC 60.509 66.667 6.78 0.45 39.61 4.85
66 67 2.183555 GGTAGGAACGTCCAGCGG 59.816 66.667 6.78 0.00 46.52 5.52
67 68 2.508663 GTAGGAACGTCCAGCGGC 60.509 66.667 6.78 0.00 46.52 6.53
68 69 2.678934 TAGGAACGTCCAGCGGCT 60.679 61.111 0.00 0.00 46.52 5.52
69 70 2.707849 TAGGAACGTCCAGCGGCTC 61.708 63.158 0.00 0.00 46.52 4.70
70 71 4.373116 GGAACGTCCAGCGGCTCA 62.373 66.667 0.00 0.00 46.52 4.26
71 72 3.112709 GAACGTCCAGCGGCTCAC 61.113 66.667 0.00 0.00 46.52 3.51
74 75 4.111016 CGTCCAGCGGCTCACGTA 62.111 66.667 18.44 0.00 46.52 3.57
75 76 2.494918 GTCCAGCGGCTCACGTAT 59.505 61.111 0.00 0.00 46.52 3.06
76 77 1.589196 GTCCAGCGGCTCACGTATC 60.589 63.158 0.00 0.00 46.52 2.24
77 78 1.753078 TCCAGCGGCTCACGTATCT 60.753 57.895 0.00 0.00 46.52 1.98
78 79 1.589993 CCAGCGGCTCACGTATCTG 60.590 63.158 0.00 0.00 46.52 2.90
79 80 1.589993 CAGCGGCTCACGTATCTGG 60.590 63.158 0.00 0.00 46.52 3.86
80 81 1.753078 AGCGGCTCACGTATCTGGA 60.753 57.895 0.00 0.00 46.52 3.86
81 82 1.589196 GCGGCTCACGTATCTGGAC 60.589 63.158 0.00 0.00 46.52 4.02
82 83 2.005960 GCGGCTCACGTATCTGGACT 62.006 60.000 0.00 0.00 46.52 3.85
83 84 0.029567 CGGCTCACGTATCTGGACTC 59.970 60.000 0.00 0.00 37.93 3.36
84 85 1.394618 GGCTCACGTATCTGGACTCT 58.605 55.000 0.00 0.00 0.00 3.24
85 86 1.066303 GGCTCACGTATCTGGACTCTG 59.934 57.143 0.00 0.00 0.00 3.35
86 87 1.066303 GCTCACGTATCTGGACTCTGG 59.934 57.143 0.00 0.00 0.00 3.86
87 88 2.644676 CTCACGTATCTGGACTCTGGA 58.355 52.381 0.00 0.00 0.00 3.86
88 89 2.616376 CTCACGTATCTGGACTCTGGAG 59.384 54.545 0.00 0.00 0.00 3.86
89 90 2.238898 TCACGTATCTGGACTCTGGAGA 59.761 50.000 4.49 0.00 0.00 3.71
91 92 2.226330 CGTATCTGGACTCTGGAGAGG 58.774 57.143 8.52 0.00 46.13 3.69
103 104 2.493973 GAGAGGCCTCTCGTGCAG 59.506 66.667 39.93 0.00 45.49 4.41
104 105 2.036414 AGAGGCCTCTCGTGCAGA 59.964 61.111 30.40 0.00 44.47 4.26
105 106 1.381056 AGAGGCCTCTCGTGCAGAT 60.381 57.895 30.40 4.26 44.47 2.90
106 107 1.227205 GAGGCCTCTCGTGCAGATG 60.227 63.158 26.25 0.00 0.00 2.90
107 108 2.202987 GGCCTCTCGTGCAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
108 109 2.202987 GCCTCTCGTGCAGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
109 110 2.202987 CCTCTCGTGCAGATGGGC 60.203 66.667 0.00 0.00 0.00 5.36
110 111 2.584418 CTCTCGTGCAGATGGGCG 60.584 66.667 0.00 0.00 36.28 6.13
111 112 3.068064 TCTCGTGCAGATGGGCGA 61.068 61.111 0.00 0.00 36.28 5.54
112 113 2.584418 CTCGTGCAGATGGGCGAG 60.584 66.667 7.62 7.62 43.42 5.03
113 114 4.819761 TCGTGCAGATGGGCGAGC 62.820 66.667 0.00 0.00 36.28 5.03
115 116 3.200593 GTGCAGATGGGCGAGCAG 61.201 66.667 0.00 0.00 37.72 4.24
116 117 4.478371 TGCAGATGGGCGAGCAGG 62.478 66.667 0.00 0.00 36.28 4.85
117 118 4.166888 GCAGATGGGCGAGCAGGA 62.167 66.667 0.00 0.00 0.00 3.86
118 119 2.108566 CAGATGGGCGAGCAGGAG 59.891 66.667 0.00 0.00 0.00 3.69
119 120 3.160047 AGATGGGCGAGCAGGAGG 61.160 66.667 0.00 0.00 0.00 4.30
120 121 3.157252 GATGGGCGAGCAGGAGGA 61.157 66.667 0.00 0.00 0.00 3.71
121 122 2.688666 ATGGGCGAGCAGGAGGAA 60.689 61.111 0.00 0.00 0.00 3.36
122 123 2.657102 GATGGGCGAGCAGGAGGAAG 62.657 65.000 0.00 0.00 0.00 3.46
123 124 4.168291 GGGCGAGCAGGAGGAAGG 62.168 72.222 0.00 0.00 0.00 3.46
124 125 4.168291 GGCGAGCAGGAGGAAGGG 62.168 72.222 0.00 0.00 0.00 3.95
125 126 3.394836 GCGAGCAGGAGGAAGGGT 61.395 66.667 0.00 0.00 0.00 4.34
126 127 2.896443 CGAGCAGGAGGAAGGGTC 59.104 66.667 0.00 0.00 0.00 4.46
127 128 2.896443 GAGCAGGAGGAAGGGTCG 59.104 66.667 0.00 0.00 0.00 4.79
128 129 3.378399 GAGCAGGAGGAAGGGTCGC 62.378 68.421 0.00 0.00 0.00 5.19
129 130 4.475135 GCAGGAGGAAGGGTCGCC 62.475 72.222 0.00 0.00 0.00 5.54
130 131 3.003173 CAGGAGGAAGGGTCGCCA 61.003 66.667 0.00 0.00 0.00 5.69
131 132 2.203938 AGGAGGAAGGGTCGCCAA 60.204 61.111 0.00 0.00 0.00 4.52
132 133 2.046217 GGAGGAAGGGTCGCCAAC 60.046 66.667 0.00 0.00 0.00 3.77
133 134 2.434359 GAGGAAGGGTCGCCAACG 60.434 66.667 0.00 0.00 42.01 4.10
134 135 3.236003 GAGGAAGGGTCGCCAACGT 62.236 63.158 0.00 0.00 41.18 3.99
135 136 2.741211 GGAAGGGTCGCCAACGTC 60.741 66.667 0.00 0.00 41.18 4.34
136 137 2.029964 GAAGGGTCGCCAACGTCA 59.970 61.111 0.00 0.00 41.18 4.35
137 138 2.027625 GAAGGGTCGCCAACGTCAG 61.028 63.158 0.00 0.00 41.18 3.51
138 139 2.710724 GAAGGGTCGCCAACGTCAGT 62.711 60.000 0.00 0.00 41.18 3.41
139 140 1.466025 AAGGGTCGCCAACGTCAGTA 61.466 55.000 0.00 0.00 41.18 2.74
140 141 1.445582 GGGTCGCCAACGTCAGTAG 60.446 63.158 0.00 0.00 41.18 2.57
141 142 1.288127 GGTCGCCAACGTCAGTAGT 59.712 57.895 0.00 0.00 41.18 2.73
142 143 1.007336 GGTCGCCAACGTCAGTAGTG 61.007 60.000 0.00 0.00 41.18 2.74
143 144 0.039798 GTCGCCAACGTCAGTAGTGA 60.040 55.000 0.00 0.00 41.18 3.41
150 151 4.454554 GTCAGTAGTGACCGCGTC 57.545 61.111 18.41 3.35 46.58 5.19
151 152 1.511464 GTCAGTAGTGACCGCGTCG 60.511 63.158 18.41 0.00 46.58 5.12
152 153 2.874780 CAGTAGTGACCGCGTCGC 60.875 66.667 7.29 7.29 42.60 5.19
153 154 4.112341 AGTAGTGACCGCGTCGCC 62.112 66.667 12.44 0.00 43.20 5.54
169 170 3.382832 CCGGTCGAGGCCTGAACT 61.383 66.667 12.00 0.00 0.00 3.01
170 171 2.182030 CGGTCGAGGCCTGAACTC 59.818 66.667 12.00 0.00 0.00 3.01
175 176 2.202676 GAGGCCTGAACTCGAGCG 60.203 66.667 12.00 0.00 0.00 5.03
176 177 2.676822 AGGCCTGAACTCGAGCGA 60.677 61.111 13.61 0.00 0.00 4.93
177 178 2.507324 GGCCTGAACTCGAGCGAC 60.507 66.667 13.61 4.73 0.00 5.19
178 179 2.258591 GCCTGAACTCGAGCGACA 59.741 61.111 13.61 9.33 0.00 4.35
179 180 1.803519 GCCTGAACTCGAGCGACAG 60.804 63.158 13.61 17.76 0.00 3.51
180 181 1.803519 CCTGAACTCGAGCGACAGC 60.804 63.158 13.61 0.00 45.58 4.40
225 226 0.460311 GCTTCCTCTACGGCTTGCTA 59.540 55.000 0.00 0.00 0.00 3.49
272 273 2.202676 CCTCTCGCCGCTCTGAAC 60.203 66.667 0.00 0.00 0.00 3.18
281 282 1.005748 CGCTCTGAACTGCAGGACA 60.006 57.895 19.93 15.83 44.98 4.02
291 292 2.265739 GCAGGACACGCTGGATGA 59.734 61.111 0.00 0.00 0.00 2.92
295 296 0.615331 AGGACACGCTGGATGAATGT 59.385 50.000 0.00 0.00 0.00 2.71
298 299 2.076100 GACACGCTGGATGAATGTGAA 58.924 47.619 0.00 0.00 34.72 3.18
429 432 7.969536 TCTCTTATGTCTGGACTTTCTTTTG 57.030 36.000 2.38 0.00 0.00 2.44
430 433 7.509546 TCTCTTATGTCTGGACTTTCTTTTGT 58.490 34.615 2.38 0.00 0.00 2.83
431 434 7.993183 TCTCTTATGTCTGGACTTTCTTTTGTT 59.007 33.333 2.38 0.00 0.00 2.83
432 435 9.273016 CTCTTATGTCTGGACTTTCTTTTGTTA 57.727 33.333 2.38 0.00 0.00 2.41
433 436 9.273016 TCTTATGTCTGGACTTTCTTTTGTTAG 57.727 33.333 2.38 0.00 0.00 2.34
434 437 6.884280 ATGTCTGGACTTTCTTTTGTTAGG 57.116 37.500 2.38 0.00 0.00 2.69
435 438 5.751586 TGTCTGGACTTTCTTTTGTTAGGT 58.248 37.500 2.38 0.00 0.00 3.08
436 439 6.891388 TGTCTGGACTTTCTTTTGTTAGGTA 58.109 36.000 2.38 0.00 0.00 3.08
437 440 6.990349 TGTCTGGACTTTCTTTTGTTAGGTAG 59.010 38.462 2.38 0.00 0.00 3.18
438 441 6.990939 GTCTGGACTTTCTTTTGTTAGGTAGT 59.009 38.462 0.00 0.00 0.00 2.73
439 442 7.171167 GTCTGGACTTTCTTTTGTTAGGTAGTC 59.829 40.741 0.00 0.00 0.00 2.59
440 443 6.891388 TGGACTTTCTTTTGTTAGGTAGTCA 58.109 36.000 0.00 0.00 0.00 3.41
441 444 7.340256 TGGACTTTCTTTTGTTAGGTAGTCAA 58.660 34.615 0.00 0.00 0.00 3.18
442 445 7.996644 TGGACTTTCTTTTGTTAGGTAGTCAAT 59.003 33.333 0.00 0.00 0.00 2.57
443 446 8.504815 GGACTTTCTTTTGTTAGGTAGTCAATC 58.495 37.037 0.00 0.00 0.00 2.67
444 447 8.084590 ACTTTCTTTTGTTAGGTAGTCAATCG 57.915 34.615 0.00 0.00 0.00 3.34
445 448 7.929785 ACTTTCTTTTGTTAGGTAGTCAATCGA 59.070 33.333 0.00 0.00 0.00 3.59
446 449 7.884816 TTCTTTTGTTAGGTAGTCAATCGAG 57.115 36.000 0.00 0.00 0.00 4.04
447 450 6.395629 TCTTTTGTTAGGTAGTCAATCGAGG 58.604 40.000 0.00 0.00 0.00 4.63
448 451 4.730949 TTGTTAGGTAGTCAATCGAGGG 57.269 45.455 0.00 0.00 0.00 4.30
449 452 3.028850 TGTTAGGTAGTCAATCGAGGGG 58.971 50.000 0.00 0.00 0.00 4.79
450 453 3.029570 GTTAGGTAGTCAATCGAGGGGT 58.970 50.000 0.00 0.00 0.00 4.95
451 454 2.249309 AGGTAGTCAATCGAGGGGTT 57.751 50.000 0.00 0.00 0.00 4.11
452 455 1.831736 AGGTAGTCAATCGAGGGGTTG 59.168 52.381 0.00 0.00 0.00 3.77
453 456 1.134491 GGTAGTCAATCGAGGGGTTGG 60.134 57.143 0.00 0.00 0.00 3.77
454 457 1.553704 GTAGTCAATCGAGGGGTTGGT 59.446 52.381 0.00 0.00 0.00 3.67
455 458 0.613777 AGTCAATCGAGGGGTTGGTC 59.386 55.000 0.00 0.00 0.00 4.02
456 459 0.613777 GTCAATCGAGGGGTTGGTCT 59.386 55.000 0.00 0.00 0.00 3.85
457 460 0.613260 TCAATCGAGGGGTTGGTCTG 59.387 55.000 0.00 0.00 0.00 3.51
458 461 0.324943 CAATCGAGGGGTTGGTCTGT 59.675 55.000 0.00 0.00 0.00 3.41
459 462 0.324943 AATCGAGGGGTTGGTCTGTG 59.675 55.000 0.00 0.00 0.00 3.66
460 463 0.836400 ATCGAGGGGTTGGTCTGTGT 60.836 55.000 0.00 0.00 0.00 3.72
461 464 1.301716 CGAGGGGTTGGTCTGTGTG 60.302 63.158 0.00 0.00 0.00 3.82
462 465 1.073199 GAGGGGTTGGTCTGTGTGG 59.927 63.158 0.00 0.00 0.00 4.17
463 466 2.597510 GGGGTTGGTCTGTGTGGC 60.598 66.667 0.00 0.00 0.00 5.01
464 467 2.194597 GGGTTGGTCTGTGTGGCA 59.805 61.111 0.00 0.00 0.00 4.92
465 468 2.193536 GGGTTGGTCTGTGTGGCAC 61.194 63.158 11.55 11.55 34.56 5.01
466 469 1.453015 GGTTGGTCTGTGTGGCACA 60.453 57.895 17.96 17.96 42.45 4.57
479 482 0.814457 TGGCACACAAAACACAGTCC 59.186 50.000 0.00 0.00 0.00 3.85
480 483 0.814457 GGCACACAAAACACAGTCCA 59.186 50.000 0.00 0.00 0.00 4.02
481 484 1.203523 GGCACACAAAACACAGTCCAA 59.796 47.619 0.00 0.00 0.00 3.53
482 485 2.258755 GCACACAAAACACAGTCCAAC 58.741 47.619 0.00 0.00 0.00 3.77
483 486 2.514902 CACACAAAACACAGTCCAACG 58.485 47.619 0.00 0.00 0.00 4.10
484 487 2.160615 CACACAAAACACAGTCCAACGA 59.839 45.455 0.00 0.00 0.00 3.85
485 488 2.418628 ACACAAAACACAGTCCAACGAG 59.581 45.455 0.00 0.00 0.00 4.18
486 489 2.014128 ACAAAACACAGTCCAACGAGG 58.986 47.619 0.00 0.00 39.47 4.63
487 490 1.333619 CAAAACACAGTCCAACGAGGG 59.666 52.381 0.00 0.00 38.24 4.30
488 491 0.179029 AAACACAGTCCAACGAGGGG 60.179 55.000 0.00 0.00 38.24 4.79
489 492 2.358737 CACAGTCCAACGAGGGGC 60.359 66.667 0.00 0.00 38.24 5.80
490 493 2.526873 ACAGTCCAACGAGGGGCT 60.527 61.111 0.00 0.00 45.88 5.19
492 495 4.021925 AGTCCAACGAGGGGCTGC 62.022 66.667 3.51 0.00 42.54 5.25
493 496 4.329545 GTCCAACGAGGGGCTGCA 62.330 66.667 0.50 0.00 38.24 4.41
494 497 3.329889 TCCAACGAGGGGCTGCAT 61.330 61.111 0.50 0.00 38.24 3.96
495 498 1.992834 TCCAACGAGGGGCTGCATA 60.993 57.895 0.50 0.00 38.24 3.14
496 499 1.149174 CCAACGAGGGGCTGCATAT 59.851 57.895 0.50 0.00 0.00 1.78
497 500 0.886490 CCAACGAGGGGCTGCATATC 60.886 60.000 0.50 0.00 0.00 1.63
498 501 0.179048 CAACGAGGGGCTGCATATCA 60.179 55.000 0.50 0.00 0.00 2.15
499 502 0.767375 AACGAGGGGCTGCATATCAT 59.233 50.000 0.50 0.00 0.00 2.45
500 503 0.322975 ACGAGGGGCTGCATATCATC 59.677 55.000 0.50 0.00 0.00 2.92
501 504 0.322648 CGAGGGGCTGCATATCATCA 59.677 55.000 0.50 0.00 0.00 3.07
502 505 1.675116 CGAGGGGCTGCATATCATCAG 60.675 57.143 0.50 0.00 0.00 2.90
503 506 0.697079 AGGGGCTGCATATCATCAGG 59.303 55.000 0.50 0.00 0.00 3.86
504 507 0.403271 GGGGCTGCATATCATCAGGT 59.597 55.000 0.50 0.00 0.00 4.00
505 508 1.612726 GGGGCTGCATATCATCAGGTC 60.613 57.143 0.50 0.00 0.00 3.85
506 509 1.436600 GGCTGCATATCATCAGGTCG 58.563 55.000 0.50 0.00 0.00 4.79
507 510 1.001293 GGCTGCATATCATCAGGTCGA 59.999 52.381 0.50 0.00 0.00 4.20
508 511 2.335752 GCTGCATATCATCAGGTCGAG 58.664 52.381 0.00 0.00 0.00 4.04
509 512 2.930023 GCTGCATATCATCAGGTCGAGG 60.930 54.545 0.00 0.00 0.00 4.63
510 513 1.001293 TGCATATCATCAGGTCGAGGC 59.999 52.381 0.00 0.00 0.00 4.70
511 514 1.674221 GCATATCATCAGGTCGAGGCC 60.674 57.143 0.00 0.00 0.00 5.19
512 515 1.898472 CATATCATCAGGTCGAGGCCT 59.102 52.381 3.86 3.86 39.99 5.19
513 516 2.971901 TATCATCAGGTCGAGGCCTA 57.028 50.000 4.42 0.00 37.04 3.93
514 517 1.333177 ATCATCAGGTCGAGGCCTAC 58.667 55.000 4.42 0.00 37.04 3.18
515 518 0.259065 TCATCAGGTCGAGGCCTACT 59.741 55.000 4.42 0.00 37.04 2.57
516 519 0.387202 CATCAGGTCGAGGCCTACTG 59.613 60.000 4.42 12.53 37.04 2.74
517 520 0.033011 ATCAGGTCGAGGCCTACTGT 60.033 55.000 4.42 0.85 37.04 3.55
518 521 0.680280 TCAGGTCGAGGCCTACTGTC 60.680 60.000 4.42 0.00 37.04 3.51
519 522 1.749638 AGGTCGAGGCCTACTGTCG 60.750 63.158 4.42 4.80 37.04 4.35
520 523 2.772691 GGTCGAGGCCTACTGTCGG 61.773 68.421 4.42 0.00 34.43 4.79
521 524 3.138798 TCGAGGCCTACTGTCGGC 61.139 66.667 14.48 14.48 46.83 5.54
526 529 2.900273 GCCTACTGTCGGCATGGA 59.100 61.111 17.51 0.00 46.77 3.41
527 530 1.447643 GCCTACTGTCGGCATGGAT 59.552 57.895 17.51 0.00 46.77 3.41
528 531 0.679505 GCCTACTGTCGGCATGGATA 59.320 55.000 17.51 0.00 46.77 2.59
529 532 1.337260 GCCTACTGTCGGCATGGATAG 60.337 57.143 17.51 0.00 46.77 2.08
530 533 1.273606 CCTACTGTCGGCATGGATAGG 59.726 57.143 0.00 0.00 30.27 2.57
531 534 1.273606 CTACTGTCGGCATGGATAGGG 59.726 57.143 0.00 0.00 30.27 3.53
532 535 1.302033 CTGTCGGCATGGATAGGGC 60.302 63.158 0.00 0.00 0.00 5.19
533 536 1.762522 CTGTCGGCATGGATAGGGCT 61.763 60.000 0.00 0.00 0.00 5.19
534 537 1.004440 GTCGGCATGGATAGGGCTC 60.004 63.158 0.00 0.00 0.00 4.70
535 538 2.047844 CGGCATGGATAGGGCTCG 60.048 66.667 0.00 0.00 0.00 5.03
536 539 2.872388 CGGCATGGATAGGGCTCGT 61.872 63.158 0.00 0.00 0.00 4.18
537 540 1.004440 GGCATGGATAGGGCTCGTC 60.004 63.158 0.00 0.00 0.00 4.20
538 541 1.748403 GCATGGATAGGGCTCGTCA 59.252 57.895 0.00 0.00 0.00 4.35
539 542 0.322975 GCATGGATAGGGCTCGTCAT 59.677 55.000 0.00 0.00 0.00 3.06
540 543 1.943046 GCATGGATAGGGCTCGTCATG 60.943 57.143 0.00 6.99 36.17 3.07
541 544 0.322975 ATGGATAGGGCTCGTCATGC 59.677 55.000 0.00 0.00 0.00 4.06
542 545 1.373497 GGATAGGGCTCGTCATGCG 60.373 63.158 3.55 3.55 43.01 4.73
543 546 1.373497 GATAGGGCTCGTCATGCGG 60.373 63.158 9.16 2.86 41.72 5.69
544 547 3.521529 ATAGGGCTCGTCATGCGGC 62.522 63.158 9.16 10.48 41.72 6.53
551 554 4.505217 CGTCATGCGGCGCTGTTC 62.505 66.667 33.26 20.58 36.85 3.18
552 555 3.121030 GTCATGCGGCGCTGTTCT 61.121 61.111 33.26 9.45 0.00 3.01
553 556 2.815211 TCATGCGGCGCTGTTCTC 60.815 61.111 33.26 1.94 0.00 2.87
554 557 3.869272 CATGCGGCGCTGTTCTCC 61.869 66.667 33.26 1.10 0.00 3.71
560 563 4.070552 GCGCTGTTCTCCCGACCT 62.071 66.667 0.00 0.00 0.00 3.85
561 564 2.182030 CGCTGTTCTCCCGACCTC 59.818 66.667 0.00 0.00 0.00 3.85
562 565 2.579738 GCTGTTCTCCCGACCTCC 59.420 66.667 0.00 0.00 0.00 4.30
563 566 1.985116 GCTGTTCTCCCGACCTCCT 60.985 63.158 0.00 0.00 0.00 3.69
564 567 1.545706 GCTGTTCTCCCGACCTCCTT 61.546 60.000 0.00 0.00 0.00 3.36
565 568 0.533032 CTGTTCTCCCGACCTCCTTC 59.467 60.000 0.00 0.00 0.00 3.46
566 569 0.903454 TGTTCTCCCGACCTCCTTCC 60.903 60.000 0.00 0.00 0.00 3.46
567 570 1.305887 TTCTCCCGACCTCCTTCCC 60.306 63.158 0.00 0.00 0.00 3.97
568 571 2.038975 CTCCCGACCTCCTTCCCA 59.961 66.667 0.00 0.00 0.00 4.37
569 572 1.383248 CTCCCGACCTCCTTCCCAT 60.383 63.158 0.00 0.00 0.00 4.00
570 573 1.382695 TCCCGACCTCCTTCCCATC 60.383 63.158 0.00 0.00 0.00 3.51
571 574 1.689233 CCCGACCTCCTTCCCATCA 60.689 63.158 0.00 0.00 0.00 3.07
572 575 1.522569 CCGACCTCCTTCCCATCAC 59.477 63.158 0.00 0.00 0.00 3.06
573 576 1.264749 CCGACCTCCTTCCCATCACA 61.265 60.000 0.00 0.00 0.00 3.58
574 577 0.176680 CGACCTCCTTCCCATCACAG 59.823 60.000 0.00 0.00 0.00 3.66
575 578 0.107459 GACCTCCTTCCCATCACAGC 60.107 60.000 0.00 0.00 0.00 4.40
576 579 1.153289 CCTCCTTCCCATCACAGCG 60.153 63.158 0.00 0.00 0.00 5.18
577 580 1.599047 CTCCTTCCCATCACAGCGT 59.401 57.895 0.00 0.00 0.00 5.07
578 581 0.742281 CTCCTTCCCATCACAGCGTG 60.742 60.000 2.79 2.79 34.45 5.34
579 582 1.191489 TCCTTCCCATCACAGCGTGA 61.191 55.000 12.53 12.53 46.90 4.35
587 590 3.458872 TCACAGCGTGATGGGAATC 57.541 52.632 7.20 0.00 37.67 2.52
588 591 0.612744 TCACAGCGTGATGGGAATCA 59.387 50.000 7.20 0.00 37.67 2.57
589 592 0.729116 CACAGCGTGATGGGAATCAC 59.271 55.000 8.48 8.48 45.48 3.06
590 593 0.615331 ACAGCGTGATGGGAATCACT 59.385 50.000 14.89 0.00 46.44 3.41
591 594 1.012086 CAGCGTGATGGGAATCACTG 58.988 55.000 14.89 10.30 46.44 3.66
592 595 0.745845 AGCGTGATGGGAATCACTGC 60.746 55.000 18.91 18.91 46.44 4.40
593 596 1.718757 GCGTGATGGGAATCACTGCC 61.719 60.000 14.89 0.00 46.44 4.85
594 597 0.107508 CGTGATGGGAATCACTGCCT 60.108 55.000 14.89 0.00 46.44 4.75
595 598 1.679944 CGTGATGGGAATCACTGCCTT 60.680 52.381 14.89 0.00 46.44 4.35
596 599 2.419990 CGTGATGGGAATCACTGCCTTA 60.420 50.000 14.89 0.00 46.44 2.69
597 600 2.945668 GTGATGGGAATCACTGCCTTAC 59.054 50.000 10.81 0.00 45.48 2.34
598 601 2.575735 TGATGGGAATCACTGCCTTACA 59.424 45.455 0.00 0.00 36.22 2.41
599 602 3.010027 TGATGGGAATCACTGCCTTACAA 59.990 43.478 0.00 0.00 36.22 2.41
600 603 3.071874 TGGGAATCACTGCCTTACAAG 57.928 47.619 0.00 0.00 36.22 3.16
606 609 4.702131 GAATCACTGCCTTACAAGGTGATT 59.298 41.667 18.26 18.26 44.99 2.57
607 610 5.163713 GAATCACTGCCTTACAAGGTGATTC 60.164 44.000 23.34 23.34 46.84 2.52
642 645 9.479549 AATTTATATCCTTTCCAACAGATGTGT 57.520 29.630 0.00 0.00 39.19 3.72
644 647 8.877864 TTATATCCTTTCCAACAGATGTGTTT 57.122 30.769 5.32 0.00 45.00 2.83
645 648 4.916983 TCCTTTCCAACAGATGTGTTTG 57.083 40.909 5.32 2.80 45.00 2.93
646 649 4.277476 TCCTTTCCAACAGATGTGTTTGT 58.723 39.130 5.32 0.00 45.00 2.83
647 650 4.709397 TCCTTTCCAACAGATGTGTTTGTT 59.291 37.500 5.32 0.00 45.00 2.83
648 651 5.043248 CCTTTCCAACAGATGTGTTTGTTC 58.957 41.667 5.32 0.00 45.00 3.18
649 652 5.394005 CCTTTCCAACAGATGTGTTTGTTCA 60.394 40.000 5.32 0.00 45.00 3.18
650 653 5.850557 TTCCAACAGATGTGTTTGTTCAT 57.149 34.783 5.32 0.00 45.00 2.57
651 654 5.850557 TCCAACAGATGTGTTTGTTCATT 57.149 34.783 5.32 0.00 45.00 2.57
652 655 5.830912 TCCAACAGATGTGTTTGTTCATTC 58.169 37.500 5.32 0.00 45.00 2.67
653 656 5.359292 TCCAACAGATGTGTTTGTTCATTCA 59.641 36.000 5.32 0.00 45.00 2.57
654 657 6.040729 TCCAACAGATGTGTTTGTTCATTCAT 59.959 34.615 5.32 0.00 45.00 2.57
655 658 6.144886 CCAACAGATGTGTTTGTTCATTCATG 59.855 38.462 5.32 0.00 45.00 3.07
656 659 6.395426 ACAGATGTGTTTGTTCATTCATGT 57.605 33.333 0.00 0.00 30.30 3.21
657 660 6.808829 ACAGATGTGTTTGTTCATTCATGTT 58.191 32.000 0.00 0.00 30.30 2.71
658 661 7.267128 ACAGATGTGTTTGTTCATTCATGTTT 58.733 30.769 0.00 0.00 30.30 2.83
659 662 7.765360 ACAGATGTGTTTGTTCATTCATGTTTT 59.235 29.630 0.00 0.00 30.30 2.43
660 663 9.247126 CAGATGTGTTTGTTCATTCATGTTTTA 57.753 29.630 0.00 0.00 0.00 1.52
661 664 9.985730 AGATGTGTTTGTTCATTCATGTTTTAT 57.014 25.926 0.00 0.00 0.00 1.40
663 666 9.985730 ATGTGTTTGTTCATTCATGTTTTATCT 57.014 25.926 0.00 0.00 0.00 1.98
664 667 9.814899 TGTGTTTGTTCATTCATGTTTTATCTT 57.185 25.926 0.00 0.00 0.00 2.40
666 669 9.474920 TGTTTGTTCATTCATGTTTTATCTTCC 57.525 29.630 0.00 0.00 0.00 3.46
667 670 8.925700 GTTTGTTCATTCATGTTTTATCTTCCC 58.074 33.333 0.00 0.00 0.00 3.97
668 671 8.421249 TTGTTCATTCATGTTTTATCTTCCCT 57.579 30.769 0.00 0.00 0.00 4.20
669 672 8.421249 TGTTCATTCATGTTTTATCTTCCCTT 57.579 30.769 0.00 0.00 0.00 3.95
670 673 8.306038 TGTTCATTCATGTTTTATCTTCCCTTG 58.694 33.333 0.00 0.00 0.00 3.61
671 674 7.408756 TCATTCATGTTTTATCTTCCCTTGG 57.591 36.000 0.00 0.00 0.00 3.61
672 675 6.953520 TCATTCATGTTTTATCTTCCCTTGGT 59.046 34.615 0.00 0.00 0.00 3.67
673 676 6.588719 TTCATGTTTTATCTTCCCTTGGTG 57.411 37.500 0.00 0.00 0.00 4.17
674 677 5.016173 TCATGTTTTATCTTCCCTTGGTGG 58.984 41.667 0.00 0.00 0.00 4.61
687 690 4.718940 CCTTGGTGGGTGTGATTTTATC 57.281 45.455 0.00 0.00 0.00 1.75
688 691 3.447229 CCTTGGTGGGTGTGATTTTATCC 59.553 47.826 0.00 0.00 0.00 2.59
689 692 3.094484 TGGTGGGTGTGATTTTATCCC 57.906 47.619 0.00 0.00 38.68 3.85
690 693 2.291930 TGGTGGGTGTGATTTTATCCCC 60.292 50.000 0.00 0.00 37.52 4.81
691 694 2.384828 GTGGGTGTGATTTTATCCCCC 58.615 52.381 0.00 0.00 37.52 5.40
692 695 2.003830 TGGGTGTGATTTTATCCCCCA 58.996 47.619 0.00 0.00 38.31 4.96
693 696 2.589664 TGGGTGTGATTTTATCCCCCAT 59.410 45.455 0.00 0.00 35.77 4.00
694 697 3.013417 TGGGTGTGATTTTATCCCCCATT 59.987 43.478 0.00 0.00 35.77 3.16
695 698 4.037222 GGGTGTGATTTTATCCCCCATTT 58.963 43.478 0.00 0.00 32.66 2.32
696 699 4.473196 GGGTGTGATTTTATCCCCCATTTT 59.527 41.667 0.00 0.00 32.66 1.82
697 700 5.396324 GGGTGTGATTTTATCCCCCATTTTC 60.396 44.000 0.00 0.00 32.66 2.29
698 701 5.425217 GGTGTGATTTTATCCCCCATTTTCT 59.575 40.000 0.00 0.00 0.00 2.52
699 702 6.070251 GGTGTGATTTTATCCCCCATTTTCTT 60.070 38.462 0.00 0.00 0.00 2.52
700 703 7.394016 GTGTGATTTTATCCCCCATTTTCTTT 58.606 34.615 0.00 0.00 0.00 2.52
701 704 7.549134 GTGTGATTTTATCCCCCATTTTCTTTC 59.451 37.037 0.00 0.00 0.00 2.62
702 705 7.457535 TGTGATTTTATCCCCCATTTTCTTTCT 59.542 33.333 0.00 0.00 0.00 2.52
703 706 7.981789 GTGATTTTATCCCCCATTTTCTTTCTC 59.018 37.037 0.00 0.00 0.00 2.87
704 707 7.900784 TGATTTTATCCCCCATTTTCTTTCTCT 59.099 33.333 0.00 0.00 0.00 3.10
705 708 7.480760 TTTTATCCCCCATTTTCTTTCTCTG 57.519 36.000 0.00 0.00 0.00 3.35
706 709 4.682021 ATCCCCCATTTTCTTTCTCTGT 57.318 40.909 0.00 0.00 0.00 3.41
707 710 3.766545 TCCCCCATTTTCTTTCTCTGTG 58.233 45.455 0.00 0.00 0.00 3.66
708 711 3.140144 TCCCCCATTTTCTTTCTCTGTGT 59.860 43.478 0.00 0.00 0.00 3.72
709 712 3.897505 CCCCCATTTTCTTTCTCTGTGTT 59.102 43.478 0.00 0.00 0.00 3.32
710 713 4.021981 CCCCCATTTTCTTTCTCTGTGTTC 60.022 45.833 0.00 0.00 0.00 3.18
711 714 4.829492 CCCCATTTTCTTTCTCTGTGTTCT 59.171 41.667 0.00 0.00 0.00 3.01
712 715 5.278660 CCCCATTTTCTTTCTCTGTGTTCTG 60.279 44.000 0.00 0.00 0.00 3.02
713 716 5.532406 CCCATTTTCTTTCTCTGTGTTCTGA 59.468 40.000 0.00 0.00 0.00 3.27
714 717 6.208204 CCCATTTTCTTTCTCTGTGTTCTGAT 59.792 38.462 0.00 0.00 0.00 2.90
715 718 7.255730 CCCATTTTCTTTCTCTGTGTTCTGATT 60.256 37.037 0.00 0.00 0.00 2.57
716 719 8.139989 CCATTTTCTTTCTCTGTGTTCTGATTT 58.860 33.333 0.00 0.00 0.00 2.17
717 720 9.178427 CATTTTCTTTCTCTGTGTTCTGATTTC 57.822 33.333 0.00 0.00 0.00 2.17
718 721 8.511604 TTTTCTTTCTCTGTGTTCTGATTTCT 57.488 30.769 0.00 0.00 0.00 2.52
719 722 9.613428 TTTTCTTTCTCTGTGTTCTGATTTCTA 57.387 29.630 0.00 0.00 0.00 2.10
720 723 9.613428 TTTCTTTCTCTGTGTTCTGATTTCTAA 57.387 29.630 0.00 0.00 0.00 2.10
721 724 8.824159 TCTTTCTCTGTGTTCTGATTTCTAAG 57.176 34.615 0.00 0.00 0.00 2.18
722 725 7.386299 TCTTTCTCTGTGTTCTGATTTCTAAGC 59.614 37.037 0.00 0.00 0.00 3.09
723 726 6.101650 TCTCTGTGTTCTGATTTCTAAGCA 57.898 37.500 0.00 0.00 0.00 3.91
724 727 6.524734 TCTCTGTGTTCTGATTTCTAAGCAA 58.475 36.000 0.00 0.00 0.00 3.91
725 728 6.992123 TCTCTGTGTTCTGATTTCTAAGCAAA 59.008 34.615 0.00 0.00 0.00 3.68
726 729 7.663081 TCTCTGTGTTCTGATTTCTAAGCAAAT 59.337 33.333 0.00 0.00 0.00 2.32
727 730 8.846943 TCTGTGTTCTGATTTCTAAGCAAATA 57.153 30.769 0.00 0.00 0.00 1.40
728 731 9.283768 TCTGTGTTCTGATTTCTAAGCAAATAA 57.716 29.630 0.00 0.00 0.00 1.40
778 781 0.184933 TTGTGGCTAGGTTTGCAGGT 59.815 50.000 0.00 0.00 0.00 4.00
991 999 3.611674 TCGGTGCTCGCCAGACAA 61.612 61.111 0.07 0.00 39.05 3.18
1278 1307 6.473397 TTTTGTGCGTTTCTTTTGTTGATT 57.527 29.167 0.00 0.00 0.00 2.57
1435 1850 1.802960 GTGGACTTGATGTGAGTGCTG 59.197 52.381 0.00 0.00 36.55 4.41
2006 4748 1.204146 GGTAGATGAGGAGTGGCCAA 58.796 55.000 7.24 0.00 40.02 4.52
2485 5227 8.868522 AATGTGATTAGGAATCTGAAGTTTGA 57.131 30.769 1.24 0.00 38.72 2.69
3092 6523 3.458163 CGCCGAGGCACCCTAGAA 61.458 66.667 15.03 0.00 42.06 2.10
3110 8953 9.495382 ACCCTAGAAGATCATATTAGGTTATCC 57.505 37.037 0.00 0.00 31.06 2.59
3139 8982 4.509737 GACGCCGAGGCACCCTAC 62.510 72.222 15.03 0.00 42.06 3.18
3215 9107 8.134202 TGATCATATTAGGTTATCGTGGATGT 57.866 34.615 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.726691 CTTTGCGCGGGTACGAGTG 61.727 63.158 8.83 0.00 44.60 3.51
9 10 2.431942 CTTTGCGCGGGTACGAGT 60.432 61.111 8.83 0.00 44.60 4.18
10 11 3.849953 GCTTTGCGCGGGTACGAG 61.850 66.667 8.83 0.00 44.60 4.18
21 22 2.551270 CACTGTCGTCCGCTTTGC 59.449 61.111 0.00 0.00 0.00 3.68
22 23 2.551270 GCACTGTCGTCCGCTTTG 59.449 61.111 0.00 0.00 0.00 2.77
23 24 3.036084 CGCACTGTCGTCCGCTTT 61.036 61.111 0.00 0.00 0.00 3.51
28 29 4.664677 AGTGCCGCACTGTCGTCC 62.665 66.667 25.18 0.00 43.63 4.79
39 40 4.077184 TTCCTACCGCCAGTGCCG 62.077 66.667 0.00 0.00 0.00 5.69
40 41 2.436115 GTTCCTACCGCCAGTGCC 60.436 66.667 0.00 0.00 0.00 5.01
41 42 2.813908 CGTTCCTACCGCCAGTGC 60.814 66.667 0.00 0.00 0.00 4.40
42 43 1.445582 GACGTTCCTACCGCCAGTG 60.446 63.158 0.00 0.00 0.00 3.66
43 44 2.643232 GGACGTTCCTACCGCCAGT 61.643 63.158 0.00 0.00 32.53 4.00
44 45 2.183555 GGACGTTCCTACCGCCAG 59.816 66.667 0.00 0.00 32.53 4.85
45 46 2.601067 TGGACGTTCCTACCGCCA 60.601 61.111 0.00 0.00 37.46 5.69
46 47 2.183555 CTGGACGTTCCTACCGCC 59.816 66.667 0.00 0.00 37.46 6.13
47 48 2.508663 GCTGGACGTTCCTACCGC 60.509 66.667 0.00 0.00 37.46 5.68
48 49 2.202570 CGCTGGACGTTCCTACCG 60.203 66.667 0.00 0.00 37.46 4.02
49 50 2.183555 CCGCTGGACGTTCCTACC 59.816 66.667 0.00 0.00 41.42 3.18
50 51 2.508663 GCCGCTGGACGTTCCTAC 60.509 66.667 0.00 0.00 41.42 3.18
51 52 2.678934 AGCCGCTGGACGTTCCTA 60.679 61.111 0.00 0.00 41.42 2.94
52 53 4.070552 GAGCCGCTGGACGTTCCT 62.071 66.667 0.00 0.00 41.42 3.36
53 54 4.373116 TGAGCCGCTGGACGTTCC 62.373 66.667 0.00 0.00 41.42 3.62
54 55 3.112709 GTGAGCCGCTGGACGTTC 61.113 66.667 0.00 0.00 41.42 3.95
57 58 3.411418 ATACGTGAGCCGCTGGACG 62.411 63.158 16.44 16.44 41.42 4.79
58 59 1.589196 GATACGTGAGCCGCTGGAC 60.589 63.158 0.00 0.00 41.42 4.02
59 60 1.753078 AGATACGTGAGCCGCTGGA 60.753 57.895 0.00 0.00 41.42 3.86
60 61 1.589993 CAGATACGTGAGCCGCTGG 60.590 63.158 0.00 0.00 41.42 4.85
61 62 1.589993 CCAGATACGTGAGCCGCTG 60.590 63.158 0.00 0.00 41.42 5.18
62 63 1.753078 TCCAGATACGTGAGCCGCT 60.753 57.895 0.00 0.00 41.42 5.52
63 64 1.589196 GTCCAGATACGTGAGCCGC 60.589 63.158 0.00 0.00 41.42 6.53
64 65 0.029567 GAGTCCAGATACGTGAGCCG 59.970 60.000 0.00 0.00 44.03 5.52
65 66 1.066303 CAGAGTCCAGATACGTGAGCC 59.934 57.143 0.00 0.00 0.00 4.70
66 67 1.066303 CCAGAGTCCAGATACGTGAGC 59.934 57.143 0.00 0.00 0.00 4.26
67 68 2.616376 CTCCAGAGTCCAGATACGTGAG 59.384 54.545 0.00 0.00 0.00 3.51
68 69 2.238898 TCTCCAGAGTCCAGATACGTGA 59.761 50.000 0.00 0.00 0.00 4.35
69 70 2.616376 CTCTCCAGAGTCCAGATACGTG 59.384 54.545 0.00 0.00 37.40 4.49
70 71 2.422235 CCTCTCCAGAGTCCAGATACGT 60.422 54.545 2.92 0.00 40.48 3.57
71 72 2.226330 CCTCTCCAGAGTCCAGATACG 58.774 57.143 2.92 0.00 40.48 3.06
72 73 1.960689 GCCTCTCCAGAGTCCAGATAC 59.039 57.143 2.92 0.00 40.48 2.24
73 74 1.133325 GGCCTCTCCAGAGTCCAGATA 60.133 57.143 0.00 0.00 39.82 1.98
74 75 0.398381 GGCCTCTCCAGAGTCCAGAT 60.398 60.000 0.00 0.00 39.82 2.90
75 76 1.000993 GGCCTCTCCAGAGTCCAGA 59.999 63.158 0.00 0.00 39.82 3.86
76 77 1.001503 AGGCCTCTCCAGAGTCCAG 59.998 63.158 0.00 0.00 42.36 3.86
77 78 1.000993 GAGGCCTCTCCAGAGTCCA 59.999 63.158 26.25 0.00 42.36 4.02
78 79 1.309688 AGAGGCCTCTCCAGAGTCC 59.690 63.158 30.40 0.26 40.33 3.85
87 88 1.381056 ATCTGCACGAGAGGCCTCT 60.381 57.895 35.74 35.74 43.78 3.69
88 89 1.227205 CATCTGCACGAGAGGCCTC 60.227 63.158 26.22 26.22 32.80 4.70
89 90 2.729479 CCATCTGCACGAGAGGCCT 61.729 63.158 3.86 3.86 32.80 5.19
90 91 2.202987 CCATCTGCACGAGAGGCC 60.203 66.667 0.00 0.00 32.80 5.19
91 92 2.202987 CCCATCTGCACGAGAGGC 60.203 66.667 0.00 0.00 32.80 4.70
92 93 2.202987 GCCCATCTGCACGAGAGG 60.203 66.667 0.00 0.00 32.80 3.69
93 94 2.584418 CGCCCATCTGCACGAGAG 60.584 66.667 0.00 0.00 32.80 3.20
94 95 3.068064 TCGCCCATCTGCACGAGA 61.068 61.111 0.00 0.00 34.25 4.04
95 96 2.584418 CTCGCCCATCTGCACGAG 60.584 66.667 7.62 7.62 45.02 4.18
96 97 4.819761 GCTCGCCCATCTGCACGA 62.820 66.667 0.00 0.00 0.00 4.35
98 99 3.200593 CTGCTCGCCCATCTGCAC 61.201 66.667 0.00 0.00 0.00 4.57
99 100 4.478371 CCTGCTCGCCCATCTGCA 62.478 66.667 0.00 0.00 0.00 4.41
100 101 4.166888 TCCTGCTCGCCCATCTGC 62.167 66.667 0.00 0.00 0.00 4.26
101 102 2.108566 CTCCTGCTCGCCCATCTG 59.891 66.667 0.00 0.00 0.00 2.90
102 103 3.160047 CCTCCTGCTCGCCCATCT 61.160 66.667 0.00 0.00 0.00 2.90
103 104 2.657102 CTTCCTCCTGCTCGCCCATC 62.657 65.000 0.00 0.00 0.00 3.51
104 105 2.688666 TTCCTCCTGCTCGCCCAT 60.689 61.111 0.00 0.00 0.00 4.00
105 106 3.393970 CTTCCTCCTGCTCGCCCA 61.394 66.667 0.00 0.00 0.00 5.36
106 107 4.168291 CCTTCCTCCTGCTCGCCC 62.168 72.222 0.00 0.00 0.00 6.13
107 108 4.168291 CCCTTCCTCCTGCTCGCC 62.168 72.222 0.00 0.00 0.00 5.54
108 109 3.378399 GACCCTTCCTCCTGCTCGC 62.378 68.421 0.00 0.00 0.00 5.03
109 110 2.896443 GACCCTTCCTCCTGCTCG 59.104 66.667 0.00 0.00 0.00 5.03
110 111 2.896443 CGACCCTTCCTCCTGCTC 59.104 66.667 0.00 0.00 0.00 4.26
111 112 3.394836 GCGACCCTTCCTCCTGCT 61.395 66.667 0.00 0.00 0.00 4.24
112 113 4.475135 GGCGACCCTTCCTCCTGC 62.475 72.222 0.00 0.00 0.00 4.85
113 114 2.592993 TTGGCGACCCTTCCTCCTG 61.593 63.158 0.00 0.00 0.00 3.86
114 115 2.203938 TTGGCGACCCTTCCTCCT 60.204 61.111 0.00 0.00 0.00 3.69
115 116 2.046217 GTTGGCGACCCTTCCTCC 60.046 66.667 0.00 0.00 0.00 4.30
116 117 2.434359 CGTTGGCGACCCTTCCTC 60.434 66.667 0.00 0.00 41.33 3.71
117 118 3.236003 GACGTTGGCGACCCTTCCT 62.236 63.158 0.00 0.00 42.00 3.36
118 119 2.741211 GACGTTGGCGACCCTTCC 60.741 66.667 0.00 0.00 42.00 3.46
119 120 2.027625 CTGACGTTGGCGACCCTTC 61.028 63.158 0.00 0.00 42.00 3.46
120 121 1.466025 TACTGACGTTGGCGACCCTT 61.466 55.000 0.00 0.00 42.00 3.95
121 122 1.874345 CTACTGACGTTGGCGACCCT 61.874 60.000 0.00 0.00 42.00 4.34
122 123 1.445582 CTACTGACGTTGGCGACCC 60.446 63.158 0.00 0.00 42.00 4.46
123 124 1.007336 CACTACTGACGTTGGCGACC 61.007 60.000 0.00 0.00 42.00 4.79
124 125 0.039798 TCACTACTGACGTTGGCGAC 60.040 55.000 0.00 0.00 42.00 5.19
125 126 0.039798 GTCACTACTGACGTTGGCGA 60.040 55.000 0.00 0.00 37.67 5.54
126 127 2.431539 GTCACTACTGACGTTGGCG 58.568 57.895 0.00 0.00 37.67 5.69
133 134 1.511464 CGACGCGGTCACTACTGAC 60.511 63.158 12.47 0.00 45.54 3.51
134 135 2.865308 CGACGCGGTCACTACTGA 59.135 61.111 12.47 0.00 33.42 3.41
135 136 2.874780 GCGACGCGGTCACTACTG 60.875 66.667 12.47 0.00 32.09 2.74
136 137 4.112341 GGCGACGCGGTCACTACT 62.112 66.667 14.61 0.00 32.09 2.57
152 153 3.358076 GAGTTCAGGCCTCGACCGG 62.358 68.421 0.00 0.00 33.69 5.28
153 154 2.182030 GAGTTCAGGCCTCGACCG 59.818 66.667 0.00 0.00 33.69 4.79
158 159 2.202676 CGCTCGAGTTCAGGCCTC 60.203 66.667 15.13 0.00 0.00 4.70
159 160 2.676822 TCGCTCGAGTTCAGGCCT 60.677 61.111 15.13 0.00 0.00 5.19
160 161 2.507324 GTCGCTCGAGTTCAGGCC 60.507 66.667 15.13 0.00 0.00 5.19
161 162 1.803519 CTGTCGCTCGAGTTCAGGC 60.804 63.158 15.13 5.70 0.00 4.85
162 163 1.803519 GCTGTCGCTCGAGTTCAGG 60.804 63.158 23.70 11.74 0.00 3.86
163 164 1.069924 CTGCTGTCGCTCGAGTTCAG 61.070 60.000 15.13 18.68 36.97 3.02
164 165 1.081175 CTGCTGTCGCTCGAGTTCA 60.081 57.895 15.13 9.81 36.97 3.18
165 166 1.803519 CCTGCTGTCGCTCGAGTTC 60.804 63.158 15.13 5.56 36.97 3.01
166 167 2.259818 CCTGCTGTCGCTCGAGTT 59.740 61.111 15.13 0.00 36.97 3.01
167 168 2.983930 GACCTGCTGTCGCTCGAGT 61.984 63.158 15.13 0.00 36.97 4.18
168 169 2.202544 GACCTGCTGTCGCTCGAG 60.203 66.667 8.45 8.45 36.97 4.04
198 199 3.470888 TAGAGGAAGCAGGCGGCC 61.471 66.667 12.11 12.11 46.50 6.13
199 200 2.202946 GTAGAGGAAGCAGGCGGC 60.203 66.667 0.00 0.00 45.30 6.53
200 201 2.105128 CGTAGAGGAAGCAGGCGG 59.895 66.667 0.00 0.00 0.00 6.13
205 206 1.079127 GCAAGCCGTAGAGGAAGCA 60.079 57.895 0.00 0.00 45.00 3.91
225 226 1.821061 CTCTGTCCACCAACGAGGCT 61.821 60.000 0.00 0.00 43.14 4.58
257 258 2.568612 CAGTTCAGAGCGGCGAGA 59.431 61.111 12.98 0.00 0.00 4.04
263 264 1.005748 TGTCCTGCAGTTCAGAGCG 60.006 57.895 13.81 0.00 45.72 5.03
272 273 2.104859 CATCCAGCGTGTCCTGCAG 61.105 63.158 6.78 6.78 33.85 4.41
281 282 2.421073 CACATTCACATTCATCCAGCGT 59.579 45.455 0.00 0.00 0.00 5.07
291 292 3.553508 GCTTGGTTGCTCACATTCACATT 60.554 43.478 0.00 0.00 0.00 2.71
295 296 1.985473 AGCTTGGTTGCTCACATTCA 58.015 45.000 0.00 0.00 39.34 2.57
298 299 3.276857 CTGATAGCTTGGTTGCTCACAT 58.723 45.455 0.00 0.00 42.97 3.21
409 412 7.996644 ACCTAACAAAAGAAAGTCCAGACATAA 59.003 33.333 0.00 0.00 0.00 1.90
417 420 7.797038 TTGACTACCTAACAAAAGAAAGTCC 57.203 36.000 0.00 0.00 31.92 3.85
422 425 6.872020 CCTCGATTGACTACCTAACAAAAGAA 59.128 38.462 0.00 0.00 0.00 2.52
423 426 6.395629 CCTCGATTGACTACCTAACAAAAGA 58.604 40.000 0.00 0.00 0.00 2.52
424 427 5.581085 CCCTCGATTGACTACCTAACAAAAG 59.419 44.000 0.00 0.00 0.00 2.27
425 428 5.484715 CCCTCGATTGACTACCTAACAAAA 58.515 41.667 0.00 0.00 0.00 2.44
426 429 4.081309 CCCCTCGATTGACTACCTAACAAA 60.081 45.833 0.00 0.00 0.00 2.83
427 430 3.449737 CCCCTCGATTGACTACCTAACAA 59.550 47.826 0.00 0.00 0.00 2.83
428 431 3.028850 CCCCTCGATTGACTACCTAACA 58.971 50.000 0.00 0.00 0.00 2.41
429 432 3.029570 ACCCCTCGATTGACTACCTAAC 58.970 50.000 0.00 0.00 0.00 2.34
430 433 3.393426 ACCCCTCGATTGACTACCTAA 57.607 47.619 0.00 0.00 0.00 2.69
431 434 3.028850 CAACCCCTCGATTGACTACCTA 58.971 50.000 0.00 0.00 0.00 3.08
432 435 1.831736 CAACCCCTCGATTGACTACCT 59.168 52.381 0.00 0.00 0.00 3.08
433 436 1.134491 CCAACCCCTCGATTGACTACC 60.134 57.143 0.00 0.00 0.00 3.18
434 437 1.553704 ACCAACCCCTCGATTGACTAC 59.446 52.381 0.00 0.00 0.00 2.73
435 438 1.829222 GACCAACCCCTCGATTGACTA 59.171 52.381 0.00 0.00 0.00 2.59
436 439 0.613777 GACCAACCCCTCGATTGACT 59.386 55.000 0.00 0.00 0.00 3.41
437 440 0.613777 AGACCAACCCCTCGATTGAC 59.386 55.000 0.00 0.00 0.00 3.18
438 441 0.613260 CAGACCAACCCCTCGATTGA 59.387 55.000 0.00 0.00 0.00 2.57
439 442 0.324943 ACAGACCAACCCCTCGATTG 59.675 55.000 0.00 0.00 0.00 2.67
440 443 0.324943 CACAGACCAACCCCTCGATT 59.675 55.000 0.00 0.00 0.00 3.34
441 444 0.836400 ACACAGACCAACCCCTCGAT 60.836 55.000 0.00 0.00 0.00 3.59
442 445 1.458777 ACACAGACCAACCCCTCGA 60.459 57.895 0.00 0.00 0.00 4.04
443 446 1.301716 CACACAGACCAACCCCTCG 60.302 63.158 0.00 0.00 0.00 4.63
444 447 1.073199 CCACACAGACCAACCCCTC 59.927 63.158 0.00 0.00 0.00 4.30
445 448 3.133365 GCCACACAGACCAACCCCT 62.133 63.158 0.00 0.00 0.00 4.79
446 449 2.597510 GCCACACAGACCAACCCC 60.598 66.667 0.00 0.00 0.00 4.95
447 450 2.193536 GTGCCACACAGACCAACCC 61.194 63.158 0.00 0.00 34.08 4.11
448 451 1.453015 TGTGCCACACAGACCAACC 60.453 57.895 0.00 0.00 39.62 3.77
449 452 4.234019 TGTGCCACACAGACCAAC 57.766 55.556 0.00 0.00 39.62 3.77
458 461 1.201181 GACTGTGTTTTGTGTGCCACA 59.799 47.619 0.00 0.00 43.02 4.17
459 462 1.469079 GGACTGTGTTTTGTGTGCCAC 60.469 52.381 0.00 0.00 34.56 5.01
460 463 0.814457 GGACTGTGTTTTGTGTGCCA 59.186 50.000 0.00 0.00 0.00 4.92
461 464 0.814457 TGGACTGTGTTTTGTGTGCC 59.186 50.000 0.00 0.00 0.00 5.01
462 465 2.258755 GTTGGACTGTGTTTTGTGTGC 58.741 47.619 0.00 0.00 0.00 4.57
463 466 2.160615 TCGTTGGACTGTGTTTTGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
464 467 2.418628 CTCGTTGGACTGTGTTTTGTGT 59.581 45.455 0.00 0.00 0.00 3.72
465 468 2.223249 CCTCGTTGGACTGTGTTTTGTG 60.223 50.000 0.00 0.00 38.35 3.33
466 469 2.014128 CCTCGTTGGACTGTGTTTTGT 58.986 47.619 0.00 0.00 38.35 2.83
467 470 1.333619 CCCTCGTTGGACTGTGTTTTG 59.666 52.381 0.00 0.00 38.35 2.44
468 471 1.675552 CCCTCGTTGGACTGTGTTTT 58.324 50.000 0.00 0.00 38.35 2.43
469 472 0.179029 CCCCTCGTTGGACTGTGTTT 60.179 55.000 0.00 0.00 38.35 2.83
470 473 1.450211 CCCCTCGTTGGACTGTGTT 59.550 57.895 0.00 0.00 38.35 3.32
471 474 3.148084 CCCCTCGTTGGACTGTGT 58.852 61.111 0.00 0.00 38.35 3.72
472 475 2.358737 GCCCCTCGTTGGACTGTG 60.359 66.667 0.00 0.00 38.35 3.66
473 476 2.526873 AGCCCCTCGTTGGACTGT 60.527 61.111 0.00 0.00 38.35 3.55
474 477 2.046892 CAGCCCCTCGTTGGACTG 60.047 66.667 0.00 0.00 38.35 3.51
475 478 4.021925 GCAGCCCCTCGTTGGACT 62.022 66.667 0.00 0.00 38.35 3.85
476 479 2.252072 TATGCAGCCCCTCGTTGGAC 62.252 60.000 0.00 0.00 38.35 4.02
477 480 1.344953 ATATGCAGCCCCTCGTTGGA 61.345 55.000 0.00 0.00 38.35 3.53
478 481 0.886490 GATATGCAGCCCCTCGTTGG 60.886 60.000 0.00 0.00 0.00 3.77
479 482 0.179048 TGATATGCAGCCCCTCGTTG 60.179 55.000 0.00 0.00 0.00 4.10
480 483 0.767375 ATGATATGCAGCCCCTCGTT 59.233 50.000 0.00 0.00 0.00 3.85
481 484 0.322975 GATGATATGCAGCCCCTCGT 59.677 55.000 0.00 0.00 0.00 4.18
482 485 0.322648 TGATGATATGCAGCCCCTCG 59.677 55.000 0.00 0.00 29.98 4.63
483 486 1.339824 CCTGATGATATGCAGCCCCTC 60.340 57.143 0.00 0.00 29.98 4.30
484 487 0.697079 CCTGATGATATGCAGCCCCT 59.303 55.000 0.00 0.00 29.98 4.79
485 488 0.403271 ACCTGATGATATGCAGCCCC 59.597 55.000 0.00 0.00 29.98 5.80
486 489 1.818642 GACCTGATGATATGCAGCCC 58.181 55.000 0.00 0.00 29.98 5.19
487 490 1.001293 TCGACCTGATGATATGCAGCC 59.999 52.381 0.00 0.00 29.98 4.85
488 491 2.335752 CTCGACCTGATGATATGCAGC 58.664 52.381 0.00 0.00 0.00 5.25
489 492 2.930023 GCCTCGACCTGATGATATGCAG 60.930 54.545 0.00 0.00 0.00 4.41
490 493 1.001293 GCCTCGACCTGATGATATGCA 59.999 52.381 0.00 0.00 0.00 3.96
491 494 1.674221 GGCCTCGACCTGATGATATGC 60.674 57.143 0.00 0.00 0.00 3.14
492 495 1.898472 AGGCCTCGACCTGATGATATG 59.102 52.381 0.00 0.00 39.13 1.78
493 496 2.317371 AGGCCTCGACCTGATGATAT 57.683 50.000 0.00 0.00 39.13 1.63
494 497 2.108425 AGTAGGCCTCGACCTGATGATA 59.892 50.000 9.68 0.00 41.34 2.15
495 498 1.133325 AGTAGGCCTCGACCTGATGAT 60.133 52.381 9.68 0.00 41.34 2.45
496 499 0.259065 AGTAGGCCTCGACCTGATGA 59.741 55.000 9.68 0.00 41.34 2.92
497 500 0.387202 CAGTAGGCCTCGACCTGATG 59.613 60.000 9.68 0.00 41.34 3.07
498 501 0.033011 ACAGTAGGCCTCGACCTGAT 60.033 55.000 21.71 8.74 41.34 2.90
499 502 0.680280 GACAGTAGGCCTCGACCTGA 60.680 60.000 21.71 0.00 41.34 3.86
500 503 1.810532 GACAGTAGGCCTCGACCTG 59.189 63.158 9.68 14.12 41.34 4.00
501 504 1.749638 CGACAGTAGGCCTCGACCT 60.750 63.158 9.68 0.00 44.31 3.85
502 505 2.772691 CCGACAGTAGGCCTCGACC 61.773 68.421 9.68 0.00 0.00 4.79
503 506 2.799371 CCGACAGTAGGCCTCGAC 59.201 66.667 9.68 1.91 0.00 4.20
510 513 1.273606 CCTATCCATGCCGACAGTAGG 59.726 57.143 0.00 0.00 0.00 3.18
511 514 1.273606 CCCTATCCATGCCGACAGTAG 59.726 57.143 0.00 0.00 0.00 2.57
512 515 1.338107 CCCTATCCATGCCGACAGTA 58.662 55.000 0.00 0.00 0.00 2.74
513 516 2.044806 GCCCTATCCATGCCGACAGT 62.045 60.000 0.00 0.00 0.00 3.55
514 517 1.302033 GCCCTATCCATGCCGACAG 60.302 63.158 0.00 0.00 0.00 3.51
515 518 1.758440 GAGCCCTATCCATGCCGACA 61.758 60.000 0.00 0.00 0.00 4.35
516 519 1.004440 GAGCCCTATCCATGCCGAC 60.004 63.158 0.00 0.00 0.00 4.79
517 520 2.574018 CGAGCCCTATCCATGCCGA 61.574 63.158 0.00 0.00 0.00 5.54
518 521 2.047844 CGAGCCCTATCCATGCCG 60.048 66.667 0.00 0.00 0.00 5.69
519 522 1.004440 GACGAGCCCTATCCATGCC 60.004 63.158 0.00 0.00 0.00 4.40
520 523 0.322975 ATGACGAGCCCTATCCATGC 59.677 55.000 0.00 0.00 0.00 4.06
521 524 1.943046 GCATGACGAGCCCTATCCATG 60.943 57.143 0.00 0.00 35.72 3.66
522 525 0.322975 GCATGACGAGCCCTATCCAT 59.677 55.000 0.00 0.00 0.00 3.41
523 526 1.748403 GCATGACGAGCCCTATCCA 59.252 57.895 0.00 0.00 0.00 3.41
524 527 4.683432 GCATGACGAGCCCTATCC 57.317 61.111 0.00 0.00 0.00 2.59
534 537 4.505217 GAACAGCGCCGCATGACG 62.505 66.667 13.36 0.00 43.15 4.35
535 538 3.088500 GAGAACAGCGCCGCATGAC 62.089 63.158 13.36 7.04 0.00 3.06
536 539 2.815211 GAGAACAGCGCCGCATGA 60.815 61.111 13.36 0.00 0.00 3.07
537 540 3.869272 GGAGAACAGCGCCGCATG 61.869 66.667 13.36 9.47 0.00 4.06
549 552 1.305887 GGGAAGGAGGTCGGGAGAA 60.306 63.158 0.00 0.00 42.89 2.87
550 553 1.886730 ATGGGAAGGAGGTCGGGAGA 61.887 60.000 0.00 0.00 0.00 3.71
551 554 1.383248 ATGGGAAGGAGGTCGGGAG 60.383 63.158 0.00 0.00 0.00 4.30
552 555 1.382695 GATGGGAAGGAGGTCGGGA 60.383 63.158 0.00 0.00 0.00 5.14
553 556 1.689233 TGATGGGAAGGAGGTCGGG 60.689 63.158 0.00 0.00 0.00 5.14
554 557 1.264749 TGTGATGGGAAGGAGGTCGG 61.265 60.000 0.00 0.00 0.00 4.79
555 558 0.176680 CTGTGATGGGAAGGAGGTCG 59.823 60.000 0.00 0.00 0.00 4.79
556 559 0.107459 GCTGTGATGGGAAGGAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
557 560 1.903877 CGCTGTGATGGGAAGGAGGT 61.904 60.000 0.00 0.00 0.00 3.85
558 561 1.153289 CGCTGTGATGGGAAGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
559 562 0.742281 CACGCTGTGATGGGAAGGAG 60.742 60.000 3.04 0.00 35.23 3.69
560 563 1.191489 TCACGCTGTGATGGGAAGGA 61.191 55.000 7.20 0.00 37.67 3.36
561 564 1.296392 TCACGCTGTGATGGGAAGG 59.704 57.895 7.20 0.00 37.67 3.46
569 572 0.612744 TGATTCCCATCACGCTGTGA 59.387 50.000 12.53 12.53 46.90 3.58
570 573 3.157727 TGATTCCCATCACGCTGTG 57.842 52.632 2.79 2.79 34.22 3.66
577 580 2.575735 TGTAAGGCAGTGATTCCCATCA 59.424 45.455 0.00 0.00 37.05 3.07
578 581 3.281727 TGTAAGGCAGTGATTCCCATC 57.718 47.619 0.00 0.00 0.00 3.51
579 582 3.624777 CTTGTAAGGCAGTGATTCCCAT 58.375 45.455 0.00 0.00 0.00 4.00
580 583 2.290896 CCTTGTAAGGCAGTGATTCCCA 60.291 50.000 0.00 0.00 39.76 4.37
581 584 2.369394 CCTTGTAAGGCAGTGATTCCC 58.631 52.381 0.00 0.00 39.76 3.97
616 619 9.479549 ACACATCTGTTGGAAAGGATATAAATT 57.520 29.630 0.00 0.00 0.00 1.82
617 620 9.479549 AACACATCTGTTGGAAAGGATATAAAT 57.520 29.630 0.00 0.00 39.28 1.40
618 621 8.877864 AACACATCTGTTGGAAAGGATATAAA 57.122 30.769 0.00 0.00 39.28 1.40
619 622 8.739039 CAAACACATCTGTTGGAAAGGATATAA 58.261 33.333 0.00 0.00 39.88 0.98
620 623 7.888021 ACAAACACATCTGTTGGAAAGGATATA 59.112 33.333 0.00 0.00 39.88 0.86
621 624 6.721208 ACAAACACATCTGTTGGAAAGGATAT 59.279 34.615 0.00 0.00 39.88 1.63
622 625 6.068010 ACAAACACATCTGTTGGAAAGGATA 58.932 36.000 0.00 0.00 39.88 2.59
623 626 4.895297 ACAAACACATCTGTTGGAAAGGAT 59.105 37.500 0.00 0.00 39.88 3.24
624 627 4.277476 ACAAACACATCTGTTGGAAAGGA 58.723 39.130 0.00 0.00 39.88 3.36
625 628 4.654091 ACAAACACATCTGTTGGAAAGG 57.346 40.909 0.00 0.00 39.88 3.11
626 629 5.649557 TGAACAAACACATCTGTTGGAAAG 58.350 37.500 0.00 0.00 39.88 2.62
627 630 5.651387 TGAACAAACACATCTGTTGGAAA 57.349 34.783 0.00 0.00 39.88 3.13
628 631 5.850557 ATGAACAAACACATCTGTTGGAA 57.149 34.783 0.00 0.00 39.88 3.53
629 632 5.359292 TGAATGAACAAACACATCTGTTGGA 59.641 36.000 0.00 0.00 39.88 3.53
630 633 5.590145 TGAATGAACAAACACATCTGTTGG 58.410 37.500 0.00 0.00 39.88 3.77
631 634 6.698329 ACATGAATGAACAAACACATCTGTTG 59.302 34.615 0.00 0.00 39.88 3.33
632 635 6.808829 ACATGAATGAACAAACACATCTGTT 58.191 32.000 0.00 0.00 42.81 3.16
633 636 6.395426 ACATGAATGAACAAACACATCTGT 57.605 33.333 0.00 0.00 0.00 3.41
634 637 7.703298 AAACATGAATGAACAAACACATCTG 57.297 32.000 0.00 0.00 0.00 2.90
635 638 9.985730 ATAAAACATGAATGAACAAACACATCT 57.014 25.926 0.00 0.00 0.00 2.90
637 640 9.985730 AGATAAAACATGAATGAACAAACACAT 57.014 25.926 0.00 0.00 0.00 3.21
638 641 9.814899 AAGATAAAACATGAATGAACAAACACA 57.185 25.926 0.00 0.00 0.00 3.72
640 643 9.474920 GGAAGATAAAACATGAATGAACAAACA 57.525 29.630 0.00 0.00 0.00 2.83
641 644 8.925700 GGGAAGATAAAACATGAATGAACAAAC 58.074 33.333 0.00 0.00 0.00 2.93
642 645 8.869109 AGGGAAGATAAAACATGAATGAACAAA 58.131 29.630 0.00 0.00 0.00 2.83
643 646 8.421249 AGGGAAGATAAAACATGAATGAACAA 57.579 30.769 0.00 0.00 0.00 2.83
644 647 8.306038 CAAGGGAAGATAAAACATGAATGAACA 58.694 33.333 0.00 0.00 0.00 3.18
645 648 7.761249 CCAAGGGAAGATAAAACATGAATGAAC 59.239 37.037 0.00 0.00 0.00 3.18
646 649 7.454380 ACCAAGGGAAGATAAAACATGAATGAA 59.546 33.333 0.00 0.00 0.00 2.57
647 650 6.953520 ACCAAGGGAAGATAAAACATGAATGA 59.046 34.615 0.00 0.00 0.00 2.57
648 651 7.037438 CACCAAGGGAAGATAAAACATGAATG 58.963 38.462 0.00 0.00 0.00 2.67
649 652 6.155049 CCACCAAGGGAAGATAAAACATGAAT 59.845 38.462 0.00 0.00 0.00 2.57
650 653 5.480073 CCACCAAGGGAAGATAAAACATGAA 59.520 40.000 0.00 0.00 0.00 2.57
651 654 5.016173 CCACCAAGGGAAGATAAAACATGA 58.984 41.667 0.00 0.00 0.00 3.07
652 655 5.329035 CCACCAAGGGAAGATAAAACATG 57.671 43.478 0.00 0.00 0.00 3.21
666 669 3.447229 GGATAAAATCACACCCACCAAGG 59.553 47.826 0.00 0.00 37.03 3.61
667 670 3.447229 GGGATAAAATCACACCCACCAAG 59.553 47.826 0.00 0.00 40.20 3.61
668 671 3.436243 GGGATAAAATCACACCCACCAA 58.564 45.455 0.00 0.00 40.20 3.67
669 672 2.291930 GGGGATAAAATCACACCCACCA 60.292 50.000 0.00 0.00 42.03 4.17
670 673 2.384828 GGGGATAAAATCACACCCACC 58.615 52.381 0.00 0.00 42.03 4.61
671 674 2.291930 TGGGGGATAAAATCACACCCAC 60.292 50.000 0.00 0.00 41.35 4.61
672 675 2.003830 TGGGGGATAAAATCACACCCA 58.996 47.619 0.00 0.00 42.86 4.51
673 676 2.838637 TGGGGGATAAAATCACACCC 57.161 50.000 0.00 0.00 34.33 4.61
674 677 5.425217 AGAAAATGGGGGATAAAATCACACC 59.575 40.000 0.00 0.00 34.33 4.16
675 678 6.544928 AGAAAATGGGGGATAAAATCACAC 57.455 37.500 0.00 0.00 36.36 3.82
676 679 7.457535 AGAAAGAAAATGGGGGATAAAATCACA 59.542 33.333 0.00 0.00 33.20 3.58
677 680 7.851228 AGAAAGAAAATGGGGGATAAAATCAC 58.149 34.615 0.00 0.00 0.00 3.06
678 681 7.900784 AGAGAAAGAAAATGGGGGATAAAATCA 59.099 33.333 0.00 0.00 0.00 2.57
679 682 8.200120 CAGAGAAAGAAAATGGGGGATAAAATC 58.800 37.037 0.00 0.00 0.00 2.17
680 683 7.679881 ACAGAGAAAGAAAATGGGGGATAAAAT 59.320 33.333 0.00 0.00 0.00 1.82
681 684 7.016296 ACAGAGAAAGAAAATGGGGGATAAAA 58.984 34.615 0.00 0.00 0.00 1.52
682 685 6.437162 CACAGAGAAAGAAAATGGGGGATAAA 59.563 38.462 0.00 0.00 0.00 1.40
683 686 5.951747 CACAGAGAAAGAAAATGGGGGATAA 59.048 40.000 0.00 0.00 0.00 1.75
684 687 5.015178 ACACAGAGAAAGAAAATGGGGGATA 59.985 40.000 0.00 0.00 0.00 2.59
685 688 4.202716 ACACAGAGAAAGAAAATGGGGGAT 60.203 41.667 0.00 0.00 0.00 3.85
686 689 3.140144 ACACAGAGAAAGAAAATGGGGGA 59.860 43.478 0.00 0.00 0.00 4.81
687 690 3.500343 ACACAGAGAAAGAAAATGGGGG 58.500 45.455 0.00 0.00 0.00 5.40
688 691 4.829492 AGAACACAGAGAAAGAAAATGGGG 59.171 41.667 0.00 0.00 0.00 4.96
689 692 5.532406 TCAGAACACAGAGAAAGAAAATGGG 59.468 40.000 0.00 0.00 0.00 4.00
690 693 6.624352 TCAGAACACAGAGAAAGAAAATGG 57.376 37.500 0.00 0.00 0.00 3.16
691 694 9.178427 GAAATCAGAACACAGAGAAAGAAAATG 57.822 33.333 0.00 0.00 0.00 2.32
692 695 9.129532 AGAAATCAGAACACAGAGAAAGAAAAT 57.870 29.630 0.00 0.00 0.00 1.82
693 696 8.511604 AGAAATCAGAACACAGAGAAAGAAAA 57.488 30.769 0.00 0.00 0.00 2.29
694 697 9.613428 TTAGAAATCAGAACACAGAGAAAGAAA 57.387 29.630 0.00 0.00 0.00 2.52
695 698 9.265901 CTTAGAAATCAGAACACAGAGAAAGAA 57.734 33.333 0.00 0.00 0.00 2.52
696 699 7.386299 GCTTAGAAATCAGAACACAGAGAAAGA 59.614 37.037 0.00 0.00 0.00 2.52
697 700 7.172190 TGCTTAGAAATCAGAACACAGAGAAAG 59.828 37.037 0.00 0.00 0.00 2.62
698 701 6.992123 TGCTTAGAAATCAGAACACAGAGAAA 59.008 34.615 0.00 0.00 0.00 2.52
699 702 6.524734 TGCTTAGAAATCAGAACACAGAGAA 58.475 36.000 0.00 0.00 0.00 2.87
700 703 6.101650 TGCTTAGAAATCAGAACACAGAGA 57.898 37.500 0.00 0.00 0.00 3.10
701 704 6.791887 TTGCTTAGAAATCAGAACACAGAG 57.208 37.500 0.00 0.00 0.00 3.35
702 705 7.750229 ATTTGCTTAGAAATCAGAACACAGA 57.250 32.000 0.00 0.00 0.00 3.41
726 729 9.679661 TGGTTTCTTGCAATTGACTCTATATTA 57.320 29.630 10.34 0.00 0.00 0.98
727 730 8.462016 GTGGTTTCTTGCAATTGACTCTATATT 58.538 33.333 10.34 0.00 0.00 1.28
728 731 7.067494 GGTGGTTTCTTGCAATTGACTCTATAT 59.933 37.037 10.34 0.00 0.00 0.86
729 732 6.374333 GGTGGTTTCTTGCAATTGACTCTATA 59.626 38.462 10.34 0.00 0.00 1.31
730 733 5.183904 GGTGGTTTCTTGCAATTGACTCTAT 59.816 40.000 10.34 0.00 0.00 1.98
731 734 4.518970 GGTGGTTTCTTGCAATTGACTCTA 59.481 41.667 10.34 0.00 0.00 2.43
778 781 6.366877 GCAACAGATTAACGACTTGGTAGTTA 59.633 38.462 0.00 0.62 33.77 2.24
1278 1307 2.557056 CTCGATTGTAGCCGGGATCTAA 59.443 50.000 2.18 0.00 0.00 2.10
2006 4748 9.190317 ACTTCCTTTTTCACTTCACTTCTATTT 57.810 29.630 0.00 0.00 0.00 1.40
2485 5227 7.506938 TCAACTTTTCCTTCTCCTTCAAATGAT 59.493 33.333 0.00 0.00 0.00 2.45
3092 6523 7.147408 GGCATCCAGGATAACCTAATATGATCT 60.147 40.741 0.00 0.00 45.94 2.75
3139 8982 9.038803 CATCCACGATAACCTAATATGATCATG 57.961 37.037 18.72 3.44 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.