Multiple sequence alignment - TraesCS6D01G397300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G397300 chr6D 100.000 5018 0 0 1 5018 469298121 469303138 0.000000e+00 9267.0
1 TraesCS6D01G397300 chr6D 97.784 1715 33 5 1152 2864 140168497 140170208 0.000000e+00 2952.0
2 TraesCS6D01G397300 chr6D 97.836 1710 35 2 1157 2864 141305711 141307420 0.000000e+00 2952.0
3 TraesCS6D01G397300 chr6D 97.510 241 6 0 4778 5018 52469794 52469554 3.610000e-111 412.0
4 TraesCS6D01G397300 chr6D 97.510 241 6 0 4778 5018 100837538 100837778 3.610000e-111 412.0
5 TraesCS6D01G397300 chr6D 100.000 34 0 0 4734 4767 469302887 469302854 4.190000e-06 63.9
6 TraesCS6D01G397300 chr5D 98.014 1712 33 1 1156 2866 491694783 491693072 0.000000e+00 2972.0
7 TraesCS6D01G397300 chr5D 97.725 1714 37 2 1156 2867 426439941 426438228 0.000000e+00 2948.0
8 TraesCS6D01G397300 chr5D 91.533 1689 94 16 2865 4507 350368269 350366584 0.000000e+00 2281.0
9 TraesCS6D01G397300 chr5D 93.601 1172 49 12 1 1157 238121536 238122696 0.000000e+00 1725.0
10 TraesCS6D01G397300 chr7D 97.953 1710 33 2 1156 2864 299282754 299281046 0.000000e+00 2963.0
11 TraesCS6D01G397300 chr7D 94.310 1160 45 7 1 1156 615955098 615953956 0.000000e+00 1757.0
12 TraesCS6D01G397300 chr3D 97.895 1710 35 1 1156 2864 226819292 226817583 0.000000e+00 2957.0
13 TraesCS6D01G397300 chr3D 97.725 1714 38 1 1156 2868 468165554 468163841 0.000000e+00 2948.0
14 TraesCS6D01G397300 chr3D 93.983 1662 68 11 2865 4507 543499887 543501535 0.000000e+00 2486.0
15 TraesCS6D01G397300 chr3D 92.635 1670 86 16 2865 4507 126288702 126290361 0.000000e+00 2368.0
16 TraesCS6D01G397300 chr3D 94.308 1177 45 7 1 1156 543498716 543499891 0.000000e+00 1783.0
17 TraesCS6D01G397300 chr3D 97.925 241 5 0 4778 5018 149576170 149575930 7.770000e-113 418.0
18 TraesCS6D01G397300 chr3D 97.925 241 5 0 4778 5018 181392732 181392972 7.770000e-113 418.0
19 TraesCS6D01G397300 chr1D 97.836 1710 35 2 1156 2864 28191211 28192919 0.000000e+00 2952.0
20 TraesCS6D01G397300 chr1D 97.838 1711 33 4 1156 2864 283067946 283069654 0.000000e+00 2952.0
21 TraesCS6D01G397300 chr1D 94.426 1489 64 14 2865 4343 362587414 362585935 0.000000e+00 2272.0
22 TraesCS6D01G397300 chr1D 90.614 1662 91 26 2865 4507 481932783 481934398 0.000000e+00 2145.0
23 TraesCS6D01G397300 chr1D 97.925 241 5 0 4778 5018 321496253 321496493 7.770000e-113 418.0
24 TraesCS6D01G397300 chr1D 97.917 240 5 0 4778 5017 231822895 231822656 2.790000e-112 416.0
25 TraesCS6D01G397300 chr2B 94.482 1649 76 6 2865 4511 72760335 72761970 0.000000e+00 2527.0
26 TraesCS6D01G397300 chr2B 94.417 1648 79 6 2865 4510 72271201 72272837 0.000000e+00 2521.0
27 TraesCS6D01G397300 chr2B 92.451 1126 74 7 36 1156 629077295 629076176 0.000000e+00 1598.0
28 TraesCS6D01G397300 chr4D 91.816 1674 101 19 2865 4510 65097819 65096154 0.000000e+00 2300.0
29 TraesCS6D01G397300 chr4D 93.447 1175 57 7 1 1156 303072513 303073686 0.000000e+00 1725.0
30 TraesCS6D01G397300 chr4D 97.925 241 5 0 4778 5018 366747007 366747247 7.770000e-113 418.0
31 TraesCS6D01G397300 chr6A 91.657 1654 111 19 2865 4507 381114167 381112530 0.000000e+00 2265.0
32 TraesCS6D01G397300 chr4B 90.962 1549 97 15 2884 4398 183507410 183505871 0.000000e+00 2045.0
33 TraesCS6D01G397300 chr4B 92.631 1167 74 5 1 1156 41787131 41785966 0.000000e+00 1668.0
34 TraesCS6D01G397300 chr6B 90.318 1415 90 24 2865 4250 641038065 641036669 0.000000e+00 1810.0
35 TraesCS6D01G397300 chr2D 93.937 1171 49 9 1 1156 417190869 417192032 0.000000e+00 1749.0
36 TraesCS6D01G397300 chr2D 97.925 241 5 0 4778 5018 265802294 265802054 7.770000e-113 418.0
37 TraesCS6D01G397300 chr7B 92.955 1164 67 6 1 1156 721423822 721424978 0.000000e+00 1681.0
38 TraesCS6D01G397300 chr1B 92.784 1164 66 5 1 1156 641639981 641638828 0.000000e+00 1668.0
39 TraesCS6D01G397300 chr5B 91.667 1164 78 6 1 1156 345850400 345851552 0.000000e+00 1594.0
40 TraesCS6D01G397300 chrUn 94.488 889 39 5 3622 4507 24700679 24699798 0.000000e+00 1362.0
41 TraesCS6D01G397300 chr3B 93.833 908 42 4 3601 4507 476390911 476391805 0.000000e+00 1354.0
42 TraesCS6D01G397300 chr3B 93.278 729 38 5 433 1156 75525339 75526061 0.000000e+00 1064.0
43 TraesCS6D01G397300 chr5A 97.925 241 5 0 4778 5018 657785948 657786188 7.770000e-113 418.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G397300 chr6D 469298121 469303138 5017 False 9267.0 9267 100.0000 1 5018 1 chr6D.!!$F4 5017
1 TraesCS6D01G397300 chr6D 140168497 140170208 1711 False 2952.0 2952 97.7840 1152 2864 1 chr6D.!!$F2 1712
2 TraesCS6D01G397300 chr6D 141305711 141307420 1709 False 2952.0 2952 97.8360 1157 2864 1 chr6D.!!$F3 1707
3 TraesCS6D01G397300 chr5D 491693072 491694783 1711 True 2972.0 2972 98.0140 1156 2866 1 chr5D.!!$R3 1710
4 TraesCS6D01G397300 chr5D 426438228 426439941 1713 True 2948.0 2948 97.7250 1156 2867 1 chr5D.!!$R2 1711
5 TraesCS6D01G397300 chr5D 350366584 350368269 1685 True 2281.0 2281 91.5330 2865 4507 1 chr5D.!!$R1 1642
6 TraesCS6D01G397300 chr5D 238121536 238122696 1160 False 1725.0 1725 93.6010 1 1157 1 chr5D.!!$F1 1156
7 TraesCS6D01G397300 chr7D 299281046 299282754 1708 True 2963.0 2963 97.9530 1156 2864 1 chr7D.!!$R1 1708
8 TraesCS6D01G397300 chr7D 615953956 615955098 1142 True 1757.0 1757 94.3100 1 1156 1 chr7D.!!$R2 1155
9 TraesCS6D01G397300 chr3D 226817583 226819292 1709 True 2957.0 2957 97.8950 1156 2864 1 chr3D.!!$R2 1708
10 TraesCS6D01G397300 chr3D 468163841 468165554 1713 True 2948.0 2948 97.7250 1156 2868 1 chr3D.!!$R3 1712
11 TraesCS6D01G397300 chr3D 126288702 126290361 1659 False 2368.0 2368 92.6350 2865 4507 1 chr3D.!!$F1 1642
12 TraesCS6D01G397300 chr3D 543498716 543501535 2819 False 2134.5 2486 94.1455 1 4507 2 chr3D.!!$F3 4506
13 TraesCS6D01G397300 chr1D 28191211 28192919 1708 False 2952.0 2952 97.8360 1156 2864 1 chr1D.!!$F1 1708
14 TraesCS6D01G397300 chr1D 283067946 283069654 1708 False 2952.0 2952 97.8380 1156 2864 1 chr1D.!!$F2 1708
15 TraesCS6D01G397300 chr1D 362585935 362587414 1479 True 2272.0 2272 94.4260 2865 4343 1 chr1D.!!$R2 1478
16 TraesCS6D01G397300 chr1D 481932783 481934398 1615 False 2145.0 2145 90.6140 2865 4507 1 chr1D.!!$F4 1642
17 TraesCS6D01G397300 chr2B 72760335 72761970 1635 False 2527.0 2527 94.4820 2865 4511 1 chr2B.!!$F2 1646
18 TraesCS6D01G397300 chr2B 72271201 72272837 1636 False 2521.0 2521 94.4170 2865 4510 1 chr2B.!!$F1 1645
19 TraesCS6D01G397300 chr2B 629076176 629077295 1119 True 1598.0 1598 92.4510 36 1156 1 chr2B.!!$R1 1120
20 TraesCS6D01G397300 chr4D 65096154 65097819 1665 True 2300.0 2300 91.8160 2865 4510 1 chr4D.!!$R1 1645
21 TraesCS6D01G397300 chr4D 303072513 303073686 1173 False 1725.0 1725 93.4470 1 1156 1 chr4D.!!$F1 1155
22 TraesCS6D01G397300 chr6A 381112530 381114167 1637 True 2265.0 2265 91.6570 2865 4507 1 chr6A.!!$R1 1642
23 TraesCS6D01G397300 chr4B 183505871 183507410 1539 True 2045.0 2045 90.9620 2884 4398 1 chr4B.!!$R2 1514
24 TraesCS6D01G397300 chr4B 41785966 41787131 1165 True 1668.0 1668 92.6310 1 1156 1 chr4B.!!$R1 1155
25 TraesCS6D01G397300 chr6B 641036669 641038065 1396 True 1810.0 1810 90.3180 2865 4250 1 chr6B.!!$R1 1385
26 TraesCS6D01G397300 chr2D 417190869 417192032 1163 False 1749.0 1749 93.9370 1 1156 1 chr2D.!!$F1 1155
27 TraesCS6D01G397300 chr7B 721423822 721424978 1156 False 1681.0 1681 92.9550 1 1156 1 chr7B.!!$F1 1155
28 TraesCS6D01G397300 chr1B 641638828 641639981 1153 True 1668.0 1668 92.7840 1 1156 1 chr1B.!!$R1 1155
29 TraesCS6D01G397300 chr5B 345850400 345851552 1152 False 1594.0 1594 91.6670 1 1156 1 chr5B.!!$F1 1155
30 TraesCS6D01G397300 chrUn 24699798 24700679 881 True 1362.0 1362 94.4880 3622 4507 1 chrUn.!!$R1 885
31 TraesCS6D01G397300 chr3B 476390911 476391805 894 False 1354.0 1354 93.8330 3601 4507 1 chr3B.!!$F2 906
32 TraesCS6D01G397300 chr3B 75525339 75526061 722 False 1064.0 1064 93.2780 433 1156 1 chr3B.!!$F1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 840 0.320374 CCTGTCCGACAGCCAGTTTA 59.680 55.0 21.26 0.0 44.63 2.01 F
872 892 0.977627 TCCGAGATGGCACCTGATGT 60.978 55.0 0.00 0.0 37.80 3.06 F
2572 2603 1.234615 CCCTGCGTCGGTGAAACATT 61.235 55.0 0.00 0.0 39.98 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2773 2805 0.399949 AGGGGAGAGTGTTGTCCACA 60.400 55.0 0.0 0.0 42.6 4.17 R
3313 3347 5.135191 TCCTCTCTTCCTCTTCCTATCATGA 59.865 44.0 0.0 0.0 0.0 3.07 R
4837 4977 0.039165 GGCGCCAGAAAAAGGTCTTG 60.039 55.0 24.8 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 2.674754 GGTGGGAGGATTTCGGCA 59.325 61.111 0.00 0.00 0.00 5.69
117 119 4.101448 GGCACACCTCCTGCCGAT 62.101 66.667 0.00 0.00 44.78 4.18
145 147 1.344763 CTATTTAGCCCCTCCCTCACG 59.655 57.143 0.00 0.00 0.00 4.35
191 193 1.374758 CTGTTCGAGCTTTCCCGCT 60.375 57.895 0.00 0.00 44.33 5.52
446 454 3.004106 GTGAGCTGATATGGTTGATTGCC 59.996 47.826 0.00 0.00 0.00 4.52
514 522 7.986704 TGTGGTAGGCTAGATTAGTAGTAGAT 58.013 38.462 0.00 0.00 0.00 1.98
541 549 3.616219 AGTTGAACCTTGTGCTTGTGTA 58.384 40.909 0.00 0.00 0.00 2.90
614 622 7.530010 AGCATGTTGTTTGTTGTAGATGTATC 58.470 34.615 0.00 0.00 0.00 2.24
712 732 3.376234 AGATGTGCTTTCATGGATTGTCG 59.624 43.478 0.00 0.00 0.00 4.35
791 811 1.849219 GCAGACGCAAGATCTTAGTCG 59.151 52.381 25.03 21.29 43.62 4.18
820 840 0.320374 CCTGTCCGACAGCCAGTTTA 59.680 55.000 21.26 0.00 44.63 2.01
872 892 0.977627 TCCGAGATGGCACCTGATGT 60.978 55.000 0.00 0.00 37.80 3.06
940 963 2.039405 CCAACTCCTGCTGCTGCTC 61.039 63.158 17.00 0.00 40.48 4.26
1330 1356 6.707599 ACTTGACTAGCTCGTTAATCAAAC 57.292 37.500 0.00 0.00 34.52 2.93
1583 1609 6.763715 TGGGTGATTATAAAGGTGCTCTAT 57.236 37.500 0.00 0.00 0.00 1.98
1683 1709 1.819632 GGCCCACTCGGTAATGCAG 60.820 63.158 0.00 0.00 0.00 4.41
1960 1986 5.249780 AGAGGTATCTCGGTCATGTCTAT 57.750 43.478 0.00 0.00 44.47 1.98
2444 2474 3.510360 GCTCCTTTATATACGGAGGCAGA 59.490 47.826 20.80 0.36 43.56 4.26
2566 2597 4.373116 GAAGCCCTGCGTCGGTGA 62.373 66.667 0.00 0.00 0.00 4.02
2572 2603 1.234615 CCCTGCGTCGGTGAAACATT 61.235 55.000 0.00 0.00 39.98 2.71
2615 2646 1.403514 GCTGACGAAACTCTCCCTCAG 60.404 57.143 0.00 0.00 32.10 3.35
3151 3185 4.292186 ACAGAACTACAACCAGATGCAT 57.708 40.909 0.00 0.00 0.00 3.96
3276 3310 1.341383 CCTTGATGGCCCTAACAAGCT 60.341 52.381 17.11 0.00 38.52 3.74
3313 3347 0.469144 ACAAGCCATTTGACCCCGTT 60.469 50.000 0.00 0.00 39.21 4.44
3338 3372 5.678142 TGATAGGAAGAGGAAGAGAGGAT 57.322 43.478 0.00 0.00 0.00 3.24
3486 3520 3.303135 TGGCTTCAGCGACGAGGT 61.303 61.111 0.00 0.00 43.26 3.85
3632 3666 2.974148 CTGCCTGTGAGCGTGCAA 60.974 61.111 0.00 0.00 32.58 4.08
3680 3729 0.025898 GACGACGACGATGACGATGA 59.974 55.000 15.32 0.00 42.66 2.92
3681 3730 0.656259 ACGACGACGATGACGATGAT 59.344 50.000 15.32 0.00 42.66 2.45
3682 3731 1.037998 CGACGACGATGACGATGATG 58.962 55.000 0.00 0.00 42.66 3.07
3683 3732 1.332904 CGACGACGATGACGATGATGA 60.333 52.381 0.00 0.00 42.66 2.92
3684 3733 2.037649 GACGACGATGACGATGATGAC 58.962 52.381 0.00 0.00 42.66 3.06
3685 3734 1.037998 CGACGATGACGATGATGACG 58.962 55.000 0.00 0.00 42.66 4.35
4015 4118 5.400189 CCAGGGGTTTATAGTTCATGGGAAT 60.400 44.000 0.00 0.00 35.05 3.01
4135 4248 2.641559 GGCAGCAGTGTTGACAGC 59.358 61.111 11.60 0.00 34.88 4.40
4169 4298 0.037326 TGTCAAGGTGGATCGTCAGC 60.037 55.000 0.00 0.00 35.58 4.26
4511 4651 2.791868 AACCAAACACGCCCCAAGC 61.792 57.895 0.00 0.00 38.52 4.01
4520 4660 2.892425 GCCCCAAGCGATCTCGTG 60.892 66.667 1.14 0.00 42.22 4.35
4521 4661 2.579201 CCCCAAGCGATCTCGTGT 59.421 61.111 1.14 0.00 42.22 4.49
4522 4662 1.519455 CCCCAAGCGATCTCGTGTC 60.519 63.158 1.14 0.00 42.22 3.67
4523 4663 1.513158 CCCAAGCGATCTCGTGTCT 59.487 57.895 1.14 0.00 42.22 3.41
4524 4664 0.108615 CCCAAGCGATCTCGTGTCTT 60.109 55.000 1.14 0.00 42.22 3.01
4525 4665 1.673033 CCCAAGCGATCTCGTGTCTTT 60.673 52.381 1.14 0.00 42.22 2.52
4526 4666 2.069273 CCAAGCGATCTCGTGTCTTTT 58.931 47.619 1.14 0.00 42.22 2.27
4527 4667 2.092838 CCAAGCGATCTCGTGTCTTTTC 59.907 50.000 1.14 0.00 42.22 2.29
4528 4668 2.724977 AGCGATCTCGTGTCTTTTCA 57.275 45.000 1.14 0.00 42.22 2.69
4529 4669 2.329379 AGCGATCTCGTGTCTTTTCAC 58.671 47.619 1.14 0.00 42.22 3.18
4530 4670 2.058798 GCGATCTCGTGTCTTTTCACA 58.941 47.619 1.14 0.00 42.22 3.58
4531 4671 2.159960 GCGATCTCGTGTCTTTTCACAC 60.160 50.000 1.14 0.00 42.90 3.82
4532 4672 3.049912 CGATCTCGTGTCTTTTCACACA 58.950 45.455 4.71 0.00 46.09 3.72
4533 4673 3.675225 CGATCTCGTGTCTTTTCACACAT 59.325 43.478 4.71 0.00 46.09 3.21
4534 4674 4.857037 CGATCTCGTGTCTTTTCACACATA 59.143 41.667 4.71 0.00 46.09 2.29
4535 4675 5.220043 CGATCTCGTGTCTTTTCACACATAC 60.220 44.000 4.71 0.00 46.09 2.39
4536 4676 4.939271 TCTCGTGTCTTTTCACACATACA 58.061 39.130 4.71 0.00 46.09 2.29
4537 4677 5.353111 TCTCGTGTCTTTTCACACATACAA 58.647 37.500 4.71 0.00 46.09 2.41
4538 4678 5.233476 TCTCGTGTCTTTTCACACATACAAC 59.767 40.000 4.71 0.00 46.09 3.32
4539 4679 4.271533 TCGTGTCTTTTCACACATACAACC 59.728 41.667 4.71 0.00 46.09 3.77
4540 4680 4.272504 CGTGTCTTTTCACACATACAACCT 59.727 41.667 4.71 0.00 46.09 3.50
4541 4681 5.558273 CGTGTCTTTTCACACATACAACCTC 60.558 44.000 4.71 0.00 46.09 3.85
4542 4682 4.819630 TGTCTTTTCACACATACAACCTCC 59.180 41.667 0.00 0.00 0.00 4.30
4543 4683 4.819630 GTCTTTTCACACATACAACCTCCA 59.180 41.667 0.00 0.00 0.00 3.86
4544 4684 4.819630 TCTTTTCACACATACAACCTCCAC 59.180 41.667 0.00 0.00 0.00 4.02
4545 4685 2.851263 TCACACATACAACCTCCACC 57.149 50.000 0.00 0.00 0.00 4.61
4546 4686 1.001520 TCACACATACAACCTCCACCG 59.998 52.381 0.00 0.00 0.00 4.94
4547 4687 0.323629 ACACATACAACCTCCACCGG 59.676 55.000 0.00 0.00 0.00 5.28
4548 4688 0.392461 CACATACAACCTCCACCGGG 60.392 60.000 6.32 0.00 0.00 5.73
4549 4689 0.838987 ACATACAACCTCCACCGGGT 60.839 55.000 6.32 0.00 38.94 5.28
4550 4690 0.326927 CATACAACCTCCACCGGGTT 59.673 55.000 6.32 0.00 46.64 4.11
4553 4693 3.663419 AACCTCCACCGGGTTGAA 58.337 55.556 6.32 0.00 44.34 2.69
4554 4694 2.160646 AACCTCCACCGGGTTGAAT 58.839 52.632 6.32 0.00 44.34 2.57
4555 4695 0.037734 AACCTCCACCGGGTTGAATC 59.962 55.000 6.32 0.00 44.34 2.52
4556 4696 1.077716 CCTCCACCGGGTTGAATCC 60.078 63.158 6.32 0.00 34.93 3.01
4557 4697 1.449601 CTCCACCGGGTTGAATCCG 60.450 63.158 10.49 10.49 46.43 4.18
4566 4706 3.113260 GGGTTGAATCCGACCTCATAG 57.887 52.381 0.00 0.00 44.71 2.23
4567 4707 2.484889 GGTTGAATCCGACCTCATAGC 58.515 52.381 0.00 0.00 42.50 2.97
4568 4708 2.103263 GGTTGAATCCGACCTCATAGCT 59.897 50.000 0.00 0.00 42.50 3.32
4569 4709 3.385577 GTTGAATCCGACCTCATAGCTC 58.614 50.000 0.00 0.00 0.00 4.09
4570 4710 1.964223 TGAATCCGACCTCATAGCTCC 59.036 52.381 0.00 0.00 0.00 4.70
4571 4711 2.243810 GAATCCGACCTCATAGCTCCT 58.756 52.381 0.00 0.00 0.00 3.69
4572 4712 3.181433 TGAATCCGACCTCATAGCTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
4573 4713 2.570415 TCCGACCTCATAGCTCCTAG 57.430 55.000 0.00 0.00 0.00 3.02
4574 4714 1.775459 TCCGACCTCATAGCTCCTAGT 59.225 52.381 0.00 0.00 0.00 2.57
4575 4715 2.977580 TCCGACCTCATAGCTCCTAGTA 59.022 50.000 0.00 0.00 0.00 1.82
4576 4716 3.587951 TCCGACCTCATAGCTCCTAGTAT 59.412 47.826 0.00 0.00 0.00 2.12
4577 4717 3.942748 CCGACCTCATAGCTCCTAGTATC 59.057 52.174 0.00 0.00 0.00 2.24
4578 4718 4.323945 CCGACCTCATAGCTCCTAGTATCT 60.324 50.000 0.00 0.00 0.00 1.98
4579 4719 4.634004 CGACCTCATAGCTCCTAGTATCTG 59.366 50.000 0.00 0.00 0.00 2.90
4580 4720 5.566469 GACCTCATAGCTCCTAGTATCTGT 58.434 45.833 0.00 0.00 0.00 3.41
4581 4721 6.574662 CGACCTCATAGCTCCTAGTATCTGTA 60.575 46.154 0.00 0.00 0.00 2.74
4582 4722 7.092748 ACCTCATAGCTCCTAGTATCTGTAA 57.907 40.000 0.00 0.00 0.00 2.41
4583 4723 7.172342 ACCTCATAGCTCCTAGTATCTGTAAG 58.828 42.308 0.00 0.00 0.00 2.34
4584 4724 7.172342 CCTCATAGCTCCTAGTATCTGTAAGT 58.828 42.308 0.00 0.00 33.76 2.24
4585 4725 8.322828 CCTCATAGCTCCTAGTATCTGTAAGTA 58.677 40.741 0.00 0.00 33.76 2.24
4586 4726 9.727859 CTCATAGCTCCTAGTATCTGTAAGTAA 57.272 37.037 0.00 0.00 33.76 2.24
4589 4729 7.826918 AGCTCCTAGTATCTGTAAGTAAAGG 57.173 40.000 0.00 0.00 33.76 3.11
4590 4730 6.778559 AGCTCCTAGTATCTGTAAGTAAAGGG 59.221 42.308 0.00 0.00 33.76 3.95
4591 4731 6.015265 GCTCCTAGTATCTGTAAGTAAAGGGG 60.015 46.154 0.00 0.00 33.76 4.79
4592 4732 7.229951 TCCTAGTATCTGTAAGTAAAGGGGA 57.770 40.000 0.00 0.00 33.76 4.81
4593 4733 7.296098 TCCTAGTATCTGTAAGTAAAGGGGAG 58.704 42.308 0.00 0.00 33.76 4.30
4594 4734 7.129972 TCCTAGTATCTGTAAGTAAAGGGGAGA 59.870 40.741 0.00 0.00 33.76 3.71
4595 4735 7.783596 CCTAGTATCTGTAAGTAAAGGGGAGAA 59.216 40.741 0.00 0.00 33.76 2.87
4596 4736 9.198475 CTAGTATCTGTAAGTAAAGGGGAGAAA 57.802 37.037 0.00 0.00 33.76 2.52
4597 4737 8.445361 AGTATCTGTAAGTAAAGGGGAGAAAA 57.555 34.615 0.00 0.00 33.76 2.29
4598 4738 8.887393 AGTATCTGTAAGTAAAGGGGAGAAAAA 58.113 33.333 0.00 0.00 33.76 1.94
4599 4739 9.682465 GTATCTGTAAGTAAAGGGGAGAAAAAT 57.318 33.333 0.00 0.00 33.76 1.82
4602 4742 9.734984 TCTGTAAGTAAAGGGGAGAAAAATTAG 57.265 33.333 0.00 0.00 33.76 1.73
4603 4743 8.873186 TGTAAGTAAAGGGGAGAAAAATTAGG 57.127 34.615 0.00 0.00 0.00 2.69
4604 4744 6.852420 AAGTAAAGGGGAGAAAAATTAGGC 57.148 37.500 0.00 0.00 0.00 3.93
4605 4745 5.899278 AGTAAAGGGGAGAAAAATTAGGCA 58.101 37.500 0.00 0.00 0.00 4.75
4606 4746 5.952347 AGTAAAGGGGAGAAAAATTAGGCAG 59.048 40.000 0.00 0.00 0.00 4.85
4607 4747 3.388552 AGGGGAGAAAAATTAGGCAGG 57.611 47.619 0.00 0.00 0.00 4.85
4608 4748 2.926329 AGGGGAGAAAAATTAGGCAGGA 59.074 45.455 0.00 0.00 0.00 3.86
4609 4749 3.533487 AGGGGAGAAAAATTAGGCAGGAT 59.467 43.478 0.00 0.00 0.00 3.24
4610 4750 3.638627 GGGGAGAAAAATTAGGCAGGATG 59.361 47.826 0.00 0.00 40.87 3.51
4624 4764 2.613691 CAGGATGCATTGGTTCTTTGC 58.386 47.619 0.00 0.00 36.91 3.68
4625 4765 2.232941 CAGGATGCATTGGTTCTTTGCT 59.767 45.455 0.00 0.00 37.28 3.91
4626 4766 3.444742 CAGGATGCATTGGTTCTTTGCTA 59.555 43.478 0.00 0.00 37.28 3.49
4627 4767 4.082081 CAGGATGCATTGGTTCTTTGCTAA 60.082 41.667 0.00 0.00 37.28 3.09
4628 4768 4.713321 AGGATGCATTGGTTCTTTGCTAAT 59.287 37.500 0.00 0.00 37.28 1.73
4629 4769 5.188359 AGGATGCATTGGTTCTTTGCTAATT 59.812 36.000 0.00 0.00 37.28 1.40
4630 4770 5.292589 GGATGCATTGGTTCTTTGCTAATTG 59.707 40.000 0.00 0.00 37.28 2.32
4631 4771 5.212532 TGCATTGGTTCTTTGCTAATTGT 57.787 34.783 0.00 0.00 37.28 2.71
4632 4772 4.989797 TGCATTGGTTCTTTGCTAATTGTG 59.010 37.500 0.00 0.00 37.28 3.33
4633 4773 4.389687 GCATTGGTTCTTTGCTAATTGTGG 59.610 41.667 0.00 0.00 33.61 4.17
4634 4774 5.540911 CATTGGTTCTTTGCTAATTGTGGT 58.459 37.500 0.00 0.00 0.00 4.16
4635 4775 4.846779 TGGTTCTTTGCTAATTGTGGTC 57.153 40.909 0.00 0.00 0.00 4.02
4636 4776 4.469657 TGGTTCTTTGCTAATTGTGGTCT 58.530 39.130 0.00 0.00 0.00 3.85
4637 4777 5.626142 TGGTTCTTTGCTAATTGTGGTCTA 58.374 37.500 0.00 0.00 0.00 2.59
4638 4778 6.245408 TGGTTCTTTGCTAATTGTGGTCTAT 58.755 36.000 0.00 0.00 0.00 1.98
4639 4779 6.374333 TGGTTCTTTGCTAATTGTGGTCTATC 59.626 38.462 0.00 0.00 0.00 2.08
4640 4780 6.599638 GGTTCTTTGCTAATTGTGGTCTATCT 59.400 38.462 0.00 0.00 0.00 1.98
4641 4781 7.769044 GGTTCTTTGCTAATTGTGGTCTATCTA 59.231 37.037 0.00 0.00 0.00 1.98
4642 4782 8.821894 GTTCTTTGCTAATTGTGGTCTATCTAG 58.178 37.037 0.00 0.00 0.00 2.43
4643 4783 8.079211 TCTTTGCTAATTGTGGTCTATCTAGT 57.921 34.615 0.00 0.00 0.00 2.57
4644 4784 8.540388 TCTTTGCTAATTGTGGTCTATCTAGTT 58.460 33.333 0.00 0.00 0.00 2.24
4645 4785 8.492673 TTTGCTAATTGTGGTCTATCTAGTTG 57.507 34.615 0.00 0.00 0.00 3.16
4646 4786 6.582636 TGCTAATTGTGGTCTATCTAGTTGG 58.417 40.000 0.00 0.00 0.00 3.77
4647 4787 6.382859 TGCTAATTGTGGTCTATCTAGTTGGA 59.617 38.462 0.00 0.00 0.00 3.53
4648 4788 6.702282 GCTAATTGTGGTCTATCTAGTTGGAC 59.298 42.308 8.42 8.42 0.00 4.02
4649 4789 6.620877 AATTGTGGTCTATCTAGTTGGACA 57.379 37.500 16.40 3.54 0.00 4.02
4650 4790 5.401531 TTGTGGTCTATCTAGTTGGACAC 57.598 43.478 16.40 12.96 0.00 3.67
4651 4791 4.412843 TGTGGTCTATCTAGTTGGACACA 58.587 43.478 16.40 14.71 0.00 3.72
4652 4792 4.219944 TGTGGTCTATCTAGTTGGACACAC 59.780 45.833 20.01 20.01 34.13 3.82
4653 4793 4.219944 GTGGTCTATCTAGTTGGACACACA 59.780 45.833 20.93 10.15 33.93 3.72
4654 4794 4.836175 TGGTCTATCTAGTTGGACACACAA 59.164 41.667 16.40 0.00 0.00 3.33
4655 4795 5.483937 TGGTCTATCTAGTTGGACACACAAT 59.516 40.000 16.40 0.00 32.24 2.71
4656 4796 6.043411 GGTCTATCTAGTTGGACACACAATC 58.957 44.000 16.40 0.00 32.24 2.67
4657 4797 6.127310 GGTCTATCTAGTTGGACACACAATCT 60.127 42.308 16.40 0.00 32.24 2.40
4658 4798 6.975772 GTCTATCTAGTTGGACACACAATCTC 59.024 42.308 11.31 0.00 32.24 2.75
4659 4799 5.745312 ATCTAGTTGGACACACAATCTCA 57.255 39.130 0.00 0.00 32.24 3.27
4660 4800 4.883083 TCTAGTTGGACACACAATCTCAC 58.117 43.478 0.00 0.00 32.24 3.51
4661 4801 2.483876 AGTTGGACACACAATCTCACG 58.516 47.619 0.00 0.00 32.24 4.35
4662 4802 1.069906 GTTGGACACACAATCTCACGC 60.070 52.381 0.00 0.00 32.24 5.34
4663 4803 0.105778 TGGACACACAATCTCACGCA 59.894 50.000 0.00 0.00 0.00 5.24
4664 4804 0.512952 GGACACACAATCTCACGCAC 59.487 55.000 0.00 0.00 0.00 5.34
4665 4805 1.217001 GACACACAATCTCACGCACA 58.783 50.000 0.00 0.00 0.00 4.57
4666 4806 1.800586 GACACACAATCTCACGCACAT 59.199 47.619 0.00 0.00 0.00 3.21
4667 4807 1.532437 ACACACAATCTCACGCACATG 59.468 47.619 0.00 0.00 0.00 3.21
4668 4808 1.799994 CACACAATCTCACGCACATGA 59.200 47.619 0.00 0.00 0.00 3.07
4669 4809 2.223845 CACACAATCTCACGCACATGAA 59.776 45.455 0.00 0.00 0.00 2.57
4670 4810 2.481568 ACACAATCTCACGCACATGAAG 59.518 45.455 0.00 0.00 0.00 3.02
4671 4811 2.481568 CACAATCTCACGCACATGAAGT 59.518 45.455 0.00 0.00 0.00 3.01
4672 4812 2.738846 ACAATCTCACGCACATGAAGTC 59.261 45.455 0.00 0.00 0.00 3.01
4673 4813 2.738314 CAATCTCACGCACATGAAGTCA 59.262 45.455 0.00 0.00 0.00 3.41
4674 4814 2.749280 TCTCACGCACATGAAGTCAT 57.251 45.000 0.00 0.00 36.96 3.06
4675 4815 2.610433 TCTCACGCACATGAAGTCATC 58.390 47.619 0.00 0.00 33.61 2.92
4676 4816 2.232208 TCTCACGCACATGAAGTCATCT 59.768 45.455 0.00 0.00 33.61 2.90
4677 4817 2.340337 TCACGCACATGAAGTCATCTG 58.660 47.619 0.00 0.00 33.61 2.90
4678 4818 2.071540 CACGCACATGAAGTCATCTGT 58.928 47.619 0.00 0.00 33.61 3.41
4679 4819 2.481568 CACGCACATGAAGTCATCTGTT 59.518 45.455 0.00 0.00 33.61 3.16
4680 4820 3.058708 CACGCACATGAAGTCATCTGTTT 60.059 43.478 0.00 0.00 33.61 2.83
4681 4821 3.187227 ACGCACATGAAGTCATCTGTTTC 59.813 43.478 0.00 0.00 33.61 2.78
4682 4822 3.722957 CGCACATGAAGTCATCTGTTTCG 60.723 47.826 0.00 0.00 33.61 3.46
4683 4823 3.433274 GCACATGAAGTCATCTGTTTCGA 59.567 43.478 0.00 0.00 33.61 3.71
4684 4824 4.083855 GCACATGAAGTCATCTGTTTCGAA 60.084 41.667 0.00 0.00 33.61 3.71
4685 4825 5.377358 CACATGAAGTCATCTGTTTCGAAC 58.623 41.667 0.00 0.00 33.61 3.95
4686 4826 5.178252 CACATGAAGTCATCTGTTTCGAACT 59.822 40.000 0.00 0.00 33.61 3.01
4687 4827 5.178252 ACATGAAGTCATCTGTTTCGAACTG 59.822 40.000 0.00 0.00 33.61 3.16
4688 4828 4.944048 TGAAGTCATCTGTTTCGAACTGA 58.056 39.130 0.00 3.71 42.37 3.41
4689 4829 5.356426 TGAAGTCATCTGTTTCGAACTGAA 58.644 37.500 0.00 0.00 41.66 3.02
4690 4830 5.815222 TGAAGTCATCTGTTTCGAACTGAAA 59.185 36.000 0.00 0.00 44.19 2.69
4691 4831 7.012327 ATGAAGTCATCTGTTTCGAACTGAAAA 59.988 33.333 0.00 0.00 39.13 2.29
4712 4852 8.200689 GAAAAGTACAATTTTCGCACTCTTAC 57.799 34.615 5.00 0.00 38.86 2.34
4713 4853 7.492352 AAAGTACAATTTTCGCACTCTTACT 57.508 32.000 0.00 0.00 0.00 2.24
4714 4854 7.492352 AAGTACAATTTTCGCACTCTTACTT 57.508 32.000 0.00 0.00 0.00 2.24
4715 4855 8.597662 AAGTACAATTTTCGCACTCTTACTTA 57.402 30.769 0.00 0.00 0.00 2.24
4716 4856 8.773404 AGTACAATTTTCGCACTCTTACTTAT 57.227 30.769 0.00 0.00 0.00 1.73
4717 4857 8.870879 AGTACAATTTTCGCACTCTTACTTATC 58.129 33.333 0.00 0.00 0.00 1.75
4718 4858 7.667043 ACAATTTTCGCACTCTTACTTATCA 57.333 32.000 0.00 0.00 0.00 2.15
4719 4859 7.743104 ACAATTTTCGCACTCTTACTTATCAG 58.257 34.615 0.00 0.00 0.00 2.90
4720 4860 7.387948 ACAATTTTCGCACTCTTACTTATCAGT 59.612 33.333 0.00 0.00 36.99 3.41
4721 4861 7.907214 ATTTTCGCACTCTTACTTATCAGTT 57.093 32.000 0.00 0.00 34.06 3.16
4722 4862 6.706055 TTTCGCACTCTTACTTATCAGTTG 57.294 37.500 0.00 0.00 34.06 3.16
4723 4863 5.638596 TCGCACTCTTACTTATCAGTTGA 57.361 39.130 0.00 0.00 34.06 3.18
4724 4864 5.641709 TCGCACTCTTACTTATCAGTTGAG 58.358 41.667 7.69 7.69 37.91 3.02
4725 4865 4.800993 CGCACTCTTACTTATCAGTTGAGG 59.199 45.833 11.74 5.21 37.02 3.86
4726 4866 5.112686 GCACTCTTACTTATCAGTTGAGGG 58.887 45.833 11.74 9.62 38.15 4.30
4727 4867 5.105310 GCACTCTTACTTATCAGTTGAGGGA 60.105 44.000 13.05 0.00 37.71 4.20
4728 4868 6.334202 CACTCTTACTTATCAGTTGAGGGAC 58.666 44.000 11.74 0.00 37.71 4.46
4729 4869 6.153680 CACTCTTACTTATCAGTTGAGGGACT 59.846 42.308 11.74 0.00 37.71 3.85
4730 4870 7.339721 CACTCTTACTTATCAGTTGAGGGACTA 59.660 40.741 11.74 0.00 37.71 2.59
4731 4871 7.894364 ACTCTTACTTATCAGTTGAGGGACTAA 59.106 37.037 11.74 0.00 37.02 2.24
4732 4872 8.294954 TCTTACTTATCAGTTGAGGGACTAAG 57.705 38.462 0.00 0.00 34.08 2.18
4733 4873 7.894364 TCTTACTTATCAGTTGAGGGACTAAGT 59.106 37.037 9.01 9.01 34.08 2.24
4734 4874 6.936968 ACTTATCAGTTGAGGGACTAAGTT 57.063 37.500 1.26 0.00 41.55 2.66
4735 4875 7.317722 ACTTATCAGTTGAGGGACTAAGTTT 57.682 36.000 1.26 0.00 41.55 2.66
4736 4876 7.746703 ACTTATCAGTTGAGGGACTAAGTTTT 58.253 34.615 1.26 0.00 41.55 2.43
4737 4877 8.218488 ACTTATCAGTTGAGGGACTAAGTTTTT 58.782 33.333 1.26 0.00 41.55 1.94
4784 4924 5.864628 AAAAATCTAGCAGAAGGTTCGAC 57.135 39.130 0.00 0.00 0.00 4.20
4785 4925 4.537135 AAATCTAGCAGAAGGTTCGACA 57.463 40.909 0.00 0.00 0.00 4.35
4786 4926 3.512033 ATCTAGCAGAAGGTTCGACAC 57.488 47.619 0.00 0.00 0.00 3.67
4787 4927 2.515854 TCTAGCAGAAGGTTCGACACT 58.484 47.619 0.00 0.00 0.00 3.55
4788 4928 2.488545 TCTAGCAGAAGGTTCGACACTC 59.511 50.000 0.00 0.00 0.00 3.51
4789 4929 1.333177 AGCAGAAGGTTCGACACTCT 58.667 50.000 0.00 0.00 0.00 3.24
4790 4930 1.689273 AGCAGAAGGTTCGACACTCTT 59.311 47.619 0.00 0.00 0.00 2.85
4791 4931 2.891580 AGCAGAAGGTTCGACACTCTTA 59.108 45.455 0.00 0.00 0.00 2.10
4792 4932 2.987821 GCAGAAGGTTCGACACTCTTAC 59.012 50.000 0.00 0.00 0.00 2.34
4793 4933 3.305471 GCAGAAGGTTCGACACTCTTACT 60.305 47.826 0.00 0.00 0.00 2.24
4794 4934 4.796618 GCAGAAGGTTCGACACTCTTACTT 60.797 45.833 0.00 0.00 0.00 2.24
4795 4935 5.564259 GCAGAAGGTTCGACACTCTTACTTA 60.564 44.000 0.00 0.00 0.00 2.24
4796 4936 6.622549 CAGAAGGTTCGACACTCTTACTTAT 58.377 40.000 0.00 0.00 0.00 1.73
4797 4937 6.748198 CAGAAGGTTCGACACTCTTACTTATC 59.252 42.308 0.00 0.00 0.00 1.75
4798 4938 5.232610 AGGTTCGACACTCTTACTTATCG 57.767 43.478 0.00 0.00 0.00 2.92
4799 4939 4.940046 AGGTTCGACACTCTTACTTATCGA 59.060 41.667 0.00 0.00 36.85 3.59
4800 4940 5.413833 AGGTTCGACACTCTTACTTATCGAA 59.586 40.000 2.99 2.99 43.90 3.71
4801 4941 6.072286 AGGTTCGACACTCTTACTTATCGAAA 60.072 38.462 8.30 0.00 46.48 3.46
4802 4942 6.250951 GGTTCGACACTCTTACTTATCGAAAG 59.749 42.308 8.30 0.00 46.48 2.62
4803 4943 7.020010 GTTCGACACTCTTACTTATCGAAAGA 58.980 38.462 8.30 5.57 46.48 2.52
4804 4944 7.216693 GTTCGACACTCTTACTTATCGAAAGAG 59.783 40.741 18.06 18.06 46.48 2.85
4805 4945 5.966503 CGACACTCTTACTTATCGAAAGAGG 59.033 44.000 21.76 15.05 46.82 3.69
4806 4946 5.652518 ACACTCTTACTTATCGAAAGAGGC 58.347 41.667 21.76 0.00 46.82 4.70
4807 4947 5.419471 ACACTCTTACTTATCGAAAGAGGCT 59.581 40.000 21.76 8.45 46.82 4.58
4808 4948 6.602406 ACACTCTTACTTATCGAAAGAGGCTA 59.398 38.462 21.76 0.00 46.82 3.93
4809 4949 6.913673 CACTCTTACTTATCGAAAGAGGCTAC 59.086 42.308 21.76 0.00 46.82 3.58
4810 4950 6.602406 ACTCTTACTTATCGAAAGAGGCTACA 59.398 38.462 21.76 0.00 46.82 2.74
4811 4951 7.122353 ACTCTTACTTATCGAAAGAGGCTACAA 59.878 37.037 21.76 3.83 46.82 2.41
4818 4958 4.442706 TCGAAAGAGGCTACAATTGATCC 58.557 43.478 13.59 9.59 34.84 3.36
4819 4959 3.561725 CGAAAGAGGCTACAATTGATCCC 59.438 47.826 13.59 8.53 0.00 3.85
4820 4960 3.584733 AAGAGGCTACAATTGATCCCC 57.415 47.619 13.59 6.75 0.00 4.81
4821 4961 2.781667 AGAGGCTACAATTGATCCCCT 58.218 47.619 13.59 11.39 0.00 4.79
4822 4962 3.941629 AGAGGCTACAATTGATCCCCTA 58.058 45.455 13.59 0.00 0.00 3.53
4823 4963 4.507342 AGAGGCTACAATTGATCCCCTAT 58.493 43.478 13.59 6.49 0.00 2.57
4824 4964 5.665701 AGAGGCTACAATTGATCCCCTATA 58.334 41.667 13.59 0.00 0.00 1.31
4825 4965 5.485708 AGAGGCTACAATTGATCCCCTATAC 59.514 44.000 13.59 1.38 0.00 1.47
4826 4966 5.415961 AGGCTACAATTGATCCCCTATACT 58.584 41.667 13.59 0.00 0.00 2.12
4827 4967 5.852250 AGGCTACAATTGATCCCCTATACTT 59.148 40.000 13.59 0.00 0.00 2.24
4828 4968 5.940470 GGCTACAATTGATCCCCTATACTTG 59.060 44.000 13.59 0.00 0.00 3.16
4829 4969 6.465894 GGCTACAATTGATCCCCTATACTTGT 60.466 42.308 13.59 0.00 0.00 3.16
4830 4970 6.428159 GCTACAATTGATCCCCTATACTTGTG 59.572 42.308 13.59 0.00 0.00 3.33
4831 4971 5.694995 ACAATTGATCCCCTATACTTGTGG 58.305 41.667 13.59 0.00 0.00 4.17
4832 4972 5.072741 CAATTGATCCCCTATACTTGTGGG 58.927 45.833 0.00 0.00 40.59 4.61
4833 4973 3.431411 TGATCCCCTATACTTGTGGGT 57.569 47.619 0.00 0.00 39.31 4.51
4834 4974 3.743132 TGATCCCCTATACTTGTGGGTT 58.257 45.455 0.00 0.00 39.31 4.11
4835 4975 4.898268 TGATCCCCTATACTTGTGGGTTA 58.102 43.478 0.00 0.00 39.31 2.85
4836 4976 5.482580 TGATCCCCTATACTTGTGGGTTAT 58.517 41.667 0.00 0.00 39.31 1.89
4837 4977 5.546499 TGATCCCCTATACTTGTGGGTTATC 59.454 44.000 0.00 0.00 39.31 1.75
4838 4978 4.898268 TCCCCTATACTTGTGGGTTATCA 58.102 43.478 0.00 0.00 39.31 2.15
4839 4979 5.290335 TCCCCTATACTTGTGGGTTATCAA 58.710 41.667 0.00 0.00 39.31 2.57
4840 4980 5.368523 TCCCCTATACTTGTGGGTTATCAAG 59.631 44.000 0.00 0.00 44.29 3.02
4841 4981 5.368523 CCCCTATACTTGTGGGTTATCAAGA 59.631 44.000 11.07 0.00 42.22 3.02
4842 4982 6.289064 CCCTATACTTGTGGGTTATCAAGAC 58.711 44.000 11.07 0.00 42.22 3.01
4843 4983 6.289064 CCTATACTTGTGGGTTATCAAGACC 58.711 44.000 11.07 0.00 42.22 3.85
4844 4984 6.099845 CCTATACTTGTGGGTTATCAAGACCT 59.900 42.308 11.07 0.10 42.22 3.85
4845 4985 4.724279 ACTTGTGGGTTATCAAGACCTT 57.276 40.909 11.07 0.00 42.22 3.50
4846 4986 5.061721 ACTTGTGGGTTATCAAGACCTTT 57.938 39.130 11.07 0.00 42.22 3.11
4847 4987 5.454966 ACTTGTGGGTTATCAAGACCTTTT 58.545 37.500 11.07 0.00 42.22 2.27
4848 4988 5.897250 ACTTGTGGGTTATCAAGACCTTTTT 59.103 36.000 11.07 0.00 42.22 1.94
4849 4989 6.040504 ACTTGTGGGTTATCAAGACCTTTTTC 59.959 38.462 11.07 0.00 42.22 2.29
4850 4990 5.701224 TGTGGGTTATCAAGACCTTTTTCT 58.299 37.500 0.00 0.00 37.34 2.52
4851 4991 5.534654 TGTGGGTTATCAAGACCTTTTTCTG 59.465 40.000 0.00 0.00 37.34 3.02
4852 4992 5.048013 GTGGGTTATCAAGACCTTTTTCTGG 60.048 44.000 0.00 0.00 37.34 3.86
4853 4993 4.082190 GGGTTATCAAGACCTTTTTCTGGC 60.082 45.833 0.00 0.00 37.34 4.85
4854 4994 4.379499 GGTTATCAAGACCTTTTTCTGGCG 60.379 45.833 0.00 0.00 34.27 5.69
4855 4995 0.951558 TCAAGACCTTTTTCTGGCGC 59.048 50.000 0.00 0.00 0.00 6.53
4856 4996 0.039165 CAAGACCTTTTTCTGGCGCC 60.039 55.000 22.73 22.73 0.00 6.53
4857 4997 1.515521 AAGACCTTTTTCTGGCGCCG 61.516 55.000 23.90 16.91 0.00 6.46
4858 4998 2.203294 ACCTTTTTCTGGCGCCGT 60.203 55.556 23.90 7.85 0.00 5.68
4859 4999 1.792118 GACCTTTTTCTGGCGCCGTT 61.792 55.000 23.90 0.00 0.00 4.44
4860 5000 1.371635 CCTTTTTCTGGCGCCGTTG 60.372 57.895 23.90 14.75 0.00 4.10
4861 5001 2.016165 CTTTTTCTGGCGCCGTTGC 61.016 57.895 23.90 0.00 0.00 4.17
4874 5014 3.284197 CGTTGCCGGGGAGTTATAG 57.716 57.895 2.18 0.00 0.00 1.31
4875 5015 0.878961 CGTTGCCGGGGAGTTATAGC 60.879 60.000 2.18 0.00 0.00 2.97
4876 5016 0.179468 GTTGCCGGGGAGTTATAGCA 59.821 55.000 2.18 0.00 0.00 3.49
4877 5017 1.136828 TTGCCGGGGAGTTATAGCAT 58.863 50.000 2.18 0.00 0.00 3.79
4878 5018 0.396435 TGCCGGGGAGTTATAGCATG 59.604 55.000 2.18 0.00 0.00 4.06
4879 5019 0.396811 GCCGGGGAGTTATAGCATGT 59.603 55.000 2.18 0.00 0.00 3.21
4880 5020 1.878102 GCCGGGGAGTTATAGCATGTG 60.878 57.143 2.18 0.00 0.00 3.21
4881 5021 1.270839 CCGGGGAGTTATAGCATGTGG 60.271 57.143 0.00 0.00 0.00 4.17
4882 5022 1.416401 CGGGGAGTTATAGCATGTGGT 59.584 52.381 0.00 0.00 0.00 4.16
4883 5023 2.806745 CGGGGAGTTATAGCATGTGGTG 60.807 54.545 0.00 0.00 0.00 4.17
4884 5024 2.438021 GGGGAGTTATAGCATGTGGTGA 59.562 50.000 0.00 0.00 0.00 4.02
4885 5025 3.118038 GGGGAGTTATAGCATGTGGTGAA 60.118 47.826 0.00 0.00 0.00 3.18
4886 5026 4.446311 GGGGAGTTATAGCATGTGGTGAAT 60.446 45.833 0.00 0.00 0.00 2.57
4887 5027 5.221843 GGGGAGTTATAGCATGTGGTGAATA 60.222 44.000 0.00 0.00 0.00 1.75
4888 5028 6.476378 GGGAGTTATAGCATGTGGTGAATAT 58.524 40.000 0.00 0.00 0.00 1.28
4889 5029 6.942576 GGGAGTTATAGCATGTGGTGAATATT 59.057 38.462 0.00 0.00 0.00 1.28
4890 5030 7.119846 GGGAGTTATAGCATGTGGTGAATATTC 59.880 40.741 8.60 8.60 0.00 1.75
4891 5031 7.880195 GGAGTTATAGCATGTGGTGAATATTCT 59.120 37.037 16.24 0.00 0.00 2.40
4892 5032 8.839310 AGTTATAGCATGTGGTGAATATTCTC 57.161 34.615 16.24 12.36 0.00 2.87
4893 5033 7.600375 AGTTATAGCATGTGGTGAATATTCTCG 59.400 37.037 16.24 1.82 0.00 4.04
4894 5034 4.142609 AGCATGTGGTGAATATTCTCGT 57.857 40.909 16.24 3.89 0.00 4.18
4895 5035 3.873361 AGCATGTGGTGAATATTCTCGTG 59.127 43.478 16.24 14.33 0.00 4.35
4896 5036 3.623060 GCATGTGGTGAATATTCTCGTGT 59.377 43.478 16.24 0.00 0.00 4.49
4897 5037 4.494690 GCATGTGGTGAATATTCTCGTGTG 60.495 45.833 16.24 10.34 0.00 3.82
4898 5038 4.265904 TGTGGTGAATATTCTCGTGTGT 57.734 40.909 16.24 0.00 0.00 3.72
4899 5039 3.993736 TGTGGTGAATATTCTCGTGTGTG 59.006 43.478 16.24 0.00 0.00 3.82
4900 5040 3.000041 TGGTGAATATTCTCGTGTGTGC 59.000 45.455 16.24 0.03 0.00 4.57
4901 5041 3.262420 GGTGAATATTCTCGTGTGTGCT 58.738 45.455 16.24 0.00 0.00 4.40
4902 5042 3.684788 GGTGAATATTCTCGTGTGTGCTT 59.315 43.478 16.24 0.00 0.00 3.91
4903 5043 4.436050 GGTGAATATTCTCGTGTGTGCTTG 60.436 45.833 16.24 0.00 0.00 4.01
4904 5044 4.152402 GTGAATATTCTCGTGTGTGCTTGT 59.848 41.667 16.24 0.00 0.00 3.16
4905 5045 4.754618 TGAATATTCTCGTGTGTGCTTGTT 59.245 37.500 16.24 0.00 0.00 2.83
4906 5046 5.238432 TGAATATTCTCGTGTGTGCTTGTTT 59.762 36.000 16.24 0.00 0.00 2.83
4907 5047 2.823196 TTCTCGTGTGTGCTTGTTTG 57.177 45.000 0.00 0.00 0.00 2.93
4908 5048 0.376852 TCTCGTGTGTGCTTGTTTGC 59.623 50.000 0.00 0.00 0.00 3.68
4909 5049 0.378257 CTCGTGTGTGCTTGTTTGCT 59.622 50.000 0.00 0.00 0.00 3.91
4910 5050 0.808125 TCGTGTGTGCTTGTTTGCTT 59.192 45.000 0.00 0.00 0.00 3.91
4911 5051 1.201181 TCGTGTGTGCTTGTTTGCTTT 59.799 42.857 0.00 0.00 0.00 3.51
4912 5052 2.420372 TCGTGTGTGCTTGTTTGCTTTA 59.580 40.909 0.00 0.00 0.00 1.85
4913 5053 3.066064 TCGTGTGTGCTTGTTTGCTTTAT 59.934 39.130 0.00 0.00 0.00 1.40
4914 5054 3.421888 CGTGTGTGCTTGTTTGCTTTATC 59.578 43.478 0.00 0.00 0.00 1.75
4915 5055 4.358851 GTGTGTGCTTGTTTGCTTTATCA 58.641 39.130 0.00 0.00 0.00 2.15
4916 5056 4.207019 GTGTGTGCTTGTTTGCTTTATCAC 59.793 41.667 0.00 0.00 0.00 3.06
4917 5057 4.097741 TGTGTGCTTGTTTGCTTTATCACT 59.902 37.500 0.00 0.00 0.00 3.41
4918 5058 5.298026 TGTGTGCTTGTTTGCTTTATCACTA 59.702 36.000 0.00 0.00 0.00 2.74
4919 5059 6.183360 TGTGTGCTTGTTTGCTTTATCACTAA 60.183 34.615 0.00 0.00 0.00 2.24
4920 5060 6.360681 GTGTGCTTGTTTGCTTTATCACTAAG 59.639 38.462 0.00 0.00 0.00 2.18
4921 5061 6.039270 TGTGCTTGTTTGCTTTATCACTAAGT 59.961 34.615 0.00 0.00 0.00 2.24
4922 5062 7.227711 TGTGCTTGTTTGCTTTATCACTAAGTA 59.772 33.333 0.00 0.00 0.00 2.24
4923 5063 8.073768 GTGCTTGTTTGCTTTATCACTAAGTAA 58.926 33.333 0.00 0.00 0.00 2.24
4924 5064 8.792633 TGCTTGTTTGCTTTATCACTAAGTAAT 58.207 29.630 0.00 0.00 29.44 1.89
4925 5065 9.626045 GCTTGTTTGCTTTATCACTAAGTAATT 57.374 29.630 0.00 0.00 29.44 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 1.918293 TGGAATCGGCAGGAGGTGT 60.918 57.895 0.00 0.00 0.00 4.16
117 119 1.228190 GGGGCTAAATAGGGGTGGAA 58.772 55.000 0.00 0.00 0.00 3.53
270 275 1.736645 CGTGGAAGATCAACGCCGT 60.737 57.895 0.00 0.00 0.00 5.68
318 324 2.479566 TTGAACTCACAGAGGCCATC 57.520 50.000 5.01 0.00 33.35 3.51
456 464 1.549203 AGCCCTACCACAAATTGCAG 58.451 50.000 0.00 0.00 0.00 4.41
514 522 4.799564 AGCACAAGGTTCAACTTCAAAA 57.200 36.364 0.00 0.00 0.00 2.44
541 549 9.570468 ACAAATCACATATCTAAGCATGATTCT 57.430 29.630 0.00 0.00 0.00 2.40
614 622 3.388308 CGGACAATCTATGAGCAGGAAG 58.612 50.000 0.00 0.00 0.00 3.46
712 732 2.643551 AGCATAGCACACAACATACCC 58.356 47.619 0.00 0.00 0.00 3.69
791 811 4.410400 CGGACAGGACAAGGGCCC 62.410 72.222 16.46 16.46 0.00 5.80
839 859 0.387202 CTCGGACATAGGCTGTGAGG 59.613 60.000 18.69 6.45 38.54 3.86
872 892 1.460504 ATCAGACGCGAACACCTCTA 58.539 50.000 15.93 0.00 0.00 2.43
1330 1356 6.428159 GTCTATGGCTAGGAAACATAACCATG 59.572 42.308 8.09 0.00 37.06 3.66
1583 1609 4.228824 ACAAGTACCTTTGGAGACACCTA 58.771 43.478 0.55 0.00 42.67 3.08
1683 1709 3.879295 TGCTTGCAAGGCTTATAGTGATC 59.121 43.478 27.10 6.74 0.00 2.92
1750 1776 2.921754 CGTTACCGGCAAGTCTCTTTAG 59.078 50.000 0.00 0.00 0.00 1.85
1944 1970 7.279090 CGAGAACTATATAGACATGACCGAGAT 59.721 40.741 16.79 0.00 0.00 2.75
1960 1986 2.954318 CCCTTCGGGTTCGAGAACTATA 59.046 50.000 14.62 0.00 46.75 1.31
2409 2437 3.661648 GGAGCAAGGGGGAGGCAA 61.662 66.667 0.00 0.00 0.00 4.52
2454 2484 5.375773 TCAAGGATCAATTGTTGTGTCTCA 58.624 37.500 5.13 0.00 0.00 3.27
2500 2530 2.414612 GTGTAATATGGTGGAGGGGGA 58.585 52.381 0.00 0.00 0.00 4.81
2615 2646 3.781770 CTCCGATCCAGCCGAGTGC 62.782 68.421 0.00 0.00 41.71 4.40
2773 2805 0.399949 AGGGGAGAGTGTTGTCCACA 60.400 55.000 0.00 0.00 42.60 4.17
3313 3347 5.135191 TCCTCTCTTCCTCTTCCTATCATGA 59.865 44.000 0.00 0.00 0.00 3.07
3338 3372 0.267054 ATCTCCTCCTCCATCAGGCA 59.733 55.000 0.00 0.00 43.08 4.75
3486 3520 0.107800 GCTGAGAGCTGCCATGAGAA 60.108 55.000 0.00 0.00 38.45 2.87
3660 3694 0.247537 CATCGTCATCGTCGTCGTCA 60.248 55.000 1.33 0.00 38.33 4.35
3680 3729 6.592607 CCCTAACTACACAAAATGTACGTCAT 59.407 38.462 0.00 0.00 43.19 3.06
3681 3730 5.927689 CCCTAACTACACAAAATGTACGTCA 59.072 40.000 0.00 0.00 43.19 4.35
3682 3731 5.163923 GCCCTAACTACACAAAATGTACGTC 60.164 44.000 0.00 0.00 43.19 4.34
3683 3732 4.692155 GCCCTAACTACACAAAATGTACGT 59.308 41.667 0.00 0.00 43.19 3.57
3684 3733 4.933400 AGCCCTAACTACACAAAATGTACG 59.067 41.667 0.00 0.00 43.19 3.67
3685 3734 5.935789 TGAGCCCTAACTACACAAAATGTAC 59.064 40.000 0.00 0.00 43.19 2.90
4015 4118 1.172180 GCCACTTGTGCACTGGCTTA 61.172 55.000 31.06 4.84 46.05 3.09
4098 4208 3.744559 GCTTTTGCACCCACTCGA 58.255 55.556 0.00 0.00 46.58 4.04
4135 4248 1.966451 GACACCTCCAACCTTGCGG 60.966 63.158 0.00 0.00 0.00 5.69
4169 4298 1.538950 GTTCTTCAGCTTCAGCCCAAG 59.461 52.381 0.00 0.00 43.38 3.61
4511 4651 3.689897 GTGTGAAAAGACACGAGATCG 57.310 47.619 0.00 0.00 42.86 3.69
4518 4658 5.277828 GGAGGTTGTATGTGTGAAAAGACAC 60.278 44.000 0.00 0.00 45.52 3.67
4519 4659 4.819630 GGAGGTTGTATGTGTGAAAAGACA 59.180 41.667 0.00 0.00 0.00 3.41
4520 4660 4.819630 TGGAGGTTGTATGTGTGAAAAGAC 59.180 41.667 0.00 0.00 0.00 3.01
4521 4661 4.819630 GTGGAGGTTGTATGTGTGAAAAGA 59.180 41.667 0.00 0.00 0.00 2.52
4522 4662 4.023193 GGTGGAGGTTGTATGTGTGAAAAG 60.023 45.833 0.00 0.00 0.00 2.27
4523 4663 3.886505 GGTGGAGGTTGTATGTGTGAAAA 59.113 43.478 0.00 0.00 0.00 2.29
4524 4664 3.482436 GGTGGAGGTTGTATGTGTGAAA 58.518 45.455 0.00 0.00 0.00 2.69
4525 4665 2.549134 CGGTGGAGGTTGTATGTGTGAA 60.549 50.000 0.00 0.00 0.00 3.18
4526 4666 1.001520 CGGTGGAGGTTGTATGTGTGA 59.998 52.381 0.00 0.00 0.00 3.58
4527 4667 1.438651 CGGTGGAGGTTGTATGTGTG 58.561 55.000 0.00 0.00 0.00 3.82
4528 4668 0.323629 CCGGTGGAGGTTGTATGTGT 59.676 55.000 0.00 0.00 0.00 3.72
4529 4669 0.392461 CCCGGTGGAGGTTGTATGTG 60.392 60.000 0.00 0.00 0.00 3.21
4530 4670 0.838987 ACCCGGTGGAGGTTGTATGT 60.839 55.000 0.00 0.00 32.05 2.29
4531 4671 0.326927 AACCCGGTGGAGGTTGTATG 59.673 55.000 0.00 0.00 45.93 2.39
4532 4672 2.781631 AACCCGGTGGAGGTTGTAT 58.218 52.632 0.00 0.00 45.93 2.29
4533 4673 4.317178 AACCCGGTGGAGGTTGTA 57.683 55.556 0.00 0.00 45.93 2.41
4537 4677 1.683441 GATTCAACCCGGTGGAGGT 59.317 57.895 0.00 0.00 40.14 3.85
4538 4678 1.077716 GGATTCAACCCGGTGGAGG 60.078 63.158 0.00 0.00 34.81 4.30
4539 4679 1.449601 CGGATTCAACCCGGTGGAG 60.450 63.158 0.00 0.00 43.05 3.86
4540 4680 1.914263 TCGGATTCAACCCGGTGGA 60.914 57.895 0.00 0.00 46.47 4.02
4541 4681 1.743995 GTCGGATTCAACCCGGTGG 60.744 63.158 0.00 0.00 46.47 4.61
4542 4682 1.743995 GGTCGGATTCAACCCGGTG 60.744 63.158 0.00 0.00 46.47 4.94
4543 4683 1.896122 GAGGTCGGATTCAACCCGGT 61.896 60.000 0.00 0.00 46.47 5.28
4544 4684 1.153429 GAGGTCGGATTCAACCCGG 60.153 63.158 0.00 0.00 46.47 5.73
4546 4686 2.807108 GCTATGAGGTCGGATTCAACCC 60.807 54.545 4.35 0.00 36.11 4.11
4547 4687 2.103263 AGCTATGAGGTCGGATTCAACC 59.897 50.000 0.00 0.37 35.69 3.77
4548 4688 3.385577 GAGCTATGAGGTCGGATTCAAC 58.614 50.000 0.00 0.00 32.69 3.18
4549 4689 2.365617 GGAGCTATGAGGTCGGATTCAA 59.634 50.000 0.00 0.00 43.29 2.69
4550 4690 1.964223 GGAGCTATGAGGTCGGATTCA 59.036 52.381 0.00 0.00 43.29 2.57
4551 4691 2.243810 AGGAGCTATGAGGTCGGATTC 58.756 52.381 0.00 0.00 43.29 2.52
4552 4692 2.390225 AGGAGCTATGAGGTCGGATT 57.610 50.000 0.00 0.00 43.29 3.01
4553 4693 2.377193 ACTAGGAGCTATGAGGTCGGAT 59.623 50.000 0.00 0.00 43.29 4.18
4554 4694 1.775459 ACTAGGAGCTATGAGGTCGGA 59.225 52.381 0.00 0.00 43.29 4.55
4555 4695 2.279935 ACTAGGAGCTATGAGGTCGG 57.720 55.000 0.00 0.00 43.29 4.79
4556 4696 4.634004 CAGATACTAGGAGCTATGAGGTCG 59.366 50.000 0.00 0.00 43.29 4.79
4557 4697 5.566469 ACAGATACTAGGAGCTATGAGGTC 58.434 45.833 0.00 0.00 41.73 3.85
4558 4698 5.592587 ACAGATACTAGGAGCTATGAGGT 57.407 43.478 0.00 0.00 0.00 3.85
4559 4699 7.172342 ACTTACAGATACTAGGAGCTATGAGG 58.828 42.308 0.00 0.00 0.00 3.86
4560 4700 9.727859 TTACTTACAGATACTAGGAGCTATGAG 57.272 37.037 0.00 0.00 0.00 2.90
4563 4703 9.523168 CCTTTACTTACAGATACTAGGAGCTAT 57.477 37.037 0.00 0.00 0.00 2.97
4564 4704 7.943447 CCCTTTACTTACAGATACTAGGAGCTA 59.057 40.741 0.00 0.00 0.00 3.32
4565 4705 6.778559 CCCTTTACTTACAGATACTAGGAGCT 59.221 42.308 0.00 0.00 0.00 4.09
4566 4706 6.015265 CCCCTTTACTTACAGATACTAGGAGC 60.015 46.154 0.00 0.00 0.00 4.70
4567 4707 7.296098 TCCCCTTTACTTACAGATACTAGGAG 58.704 42.308 0.00 0.00 0.00 3.69
4568 4708 7.129972 TCTCCCCTTTACTTACAGATACTAGGA 59.870 40.741 0.00 0.00 0.00 2.94
4569 4709 7.296098 TCTCCCCTTTACTTACAGATACTAGG 58.704 42.308 0.00 0.00 0.00 3.02
4570 4710 8.763984 TTCTCCCCTTTACTTACAGATACTAG 57.236 38.462 0.00 0.00 0.00 2.57
4571 4711 9.551339 TTTTCTCCCCTTTACTTACAGATACTA 57.449 33.333 0.00 0.00 0.00 1.82
4572 4712 8.445361 TTTTCTCCCCTTTACTTACAGATACT 57.555 34.615 0.00 0.00 0.00 2.12
4573 4713 9.682465 ATTTTTCTCCCCTTTACTTACAGATAC 57.318 33.333 0.00 0.00 0.00 2.24
4576 4716 9.734984 CTAATTTTTCTCCCCTTTACTTACAGA 57.265 33.333 0.00 0.00 0.00 3.41
4577 4717 8.957466 CCTAATTTTTCTCCCCTTTACTTACAG 58.043 37.037 0.00 0.00 0.00 2.74
4578 4718 7.395206 GCCTAATTTTTCTCCCCTTTACTTACA 59.605 37.037 0.00 0.00 0.00 2.41
4579 4719 7.395206 TGCCTAATTTTTCTCCCCTTTACTTAC 59.605 37.037 0.00 0.00 0.00 2.34
4580 4720 7.471890 TGCCTAATTTTTCTCCCCTTTACTTA 58.528 34.615 0.00 0.00 0.00 2.24
4581 4721 6.319715 TGCCTAATTTTTCTCCCCTTTACTT 58.680 36.000 0.00 0.00 0.00 2.24
4582 4722 5.899278 TGCCTAATTTTTCTCCCCTTTACT 58.101 37.500 0.00 0.00 0.00 2.24
4583 4723 5.127194 CCTGCCTAATTTTTCTCCCCTTTAC 59.873 44.000 0.00 0.00 0.00 2.01
4584 4724 5.015817 TCCTGCCTAATTTTTCTCCCCTTTA 59.984 40.000 0.00 0.00 0.00 1.85
4585 4725 4.096681 CCTGCCTAATTTTTCTCCCCTTT 58.903 43.478 0.00 0.00 0.00 3.11
4586 4726 3.336694 TCCTGCCTAATTTTTCTCCCCTT 59.663 43.478 0.00 0.00 0.00 3.95
4587 4727 2.926329 TCCTGCCTAATTTTTCTCCCCT 59.074 45.455 0.00 0.00 0.00 4.79
4588 4728 3.382083 TCCTGCCTAATTTTTCTCCCC 57.618 47.619 0.00 0.00 0.00 4.81
4589 4729 3.068732 GCATCCTGCCTAATTTTTCTCCC 59.931 47.826 0.00 0.00 37.42 4.30
4590 4730 3.701040 TGCATCCTGCCTAATTTTTCTCC 59.299 43.478 0.00 0.00 44.23 3.71
4591 4731 4.989279 TGCATCCTGCCTAATTTTTCTC 57.011 40.909 0.00 0.00 44.23 2.87
4592 4732 5.395990 CCAATGCATCCTGCCTAATTTTTCT 60.396 40.000 0.00 0.00 44.23 2.52
4593 4733 4.812626 CCAATGCATCCTGCCTAATTTTTC 59.187 41.667 0.00 0.00 44.23 2.29
4594 4734 4.225717 ACCAATGCATCCTGCCTAATTTTT 59.774 37.500 0.00 0.00 44.23 1.94
4595 4735 3.776417 ACCAATGCATCCTGCCTAATTTT 59.224 39.130 0.00 0.00 44.23 1.82
4596 4736 3.377573 ACCAATGCATCCTGCCTAATTT 58.622 40.909 0.00 0.00 44.23 1.82
4597 4737 3.036452 ACCAATGCATCCTGCCTAATT 57.964 42.857 0.00 0.00 44.23 1.40
4598 4738 2.761786 ACCAATGCATCCTGCCTAAT 57.238 45.000 0.00 0.00 44.23 1.73
4599 4739 2.025037 AGAACCAATGCATCCTGCCTAA 60.025 45.455 0.00 0.00 44.23 2.69
4600 4740 1.565759 AGAACCAATGCATCCTGCCTA 59.434 47.619 0.00 0.00 44.23 3.93
4601 4741 0.333993 AGAACCAATGCATCCTGCCT 59.666 50.000 0.00 0.00 44.23 4.75
4602 4742 1.188863 AAGAACCAATGCATCCTGCC 58.811 50.000 0.00 0.00 44.23 4.85
4603 4743 2.613691 CAAAGAACCAATGCATCCTGC 58.386 47.619 0.00 0.00 45.29 4.85
4604 4744 2.232941 AGCAAAGAACCAATGCATCCTG 59.767 45.455 0.00 0.00 42.45 3.86
4605 4745 2.532843 AGCAAAGAACCAATGCATCCT 58.467 42.857 0.00 0.00 42.45 3.24
4606 4746 4.454728 TTAGCAAAGAACCAATGCATCC 57.545 40.909 0.00 0.00 42.45 3.51
4607 4747 5.870978 ACAATTAGCAAAGAACCAATGCATC 59.129 36.000 0.00 0.00 42.45 3.91
4608 4748 5.640357 CACAATTAGCAAAGAACCAATGCAT 59.360 36.000 0.00 0.00 42.45 3.96
4609 4749 4.989797 CACAATTAGCAAAGAACCAATGCA 59.010 37.500 0.00 0.00 42.45 3.96
4610 4750 4.389687 CCACAATTAGCAAAGAACCAATGC 59.610 41.667 0.00 0.00 40.34 3.56
4611 4751 5.540911 ACCACAATTAGCAAAGAACCAATG 58.459 37.500 0.00 0.00 0.00 2.82
4612 4752 5.539955 AGACCACAATTAGCAAAGAACCAAT 59.460 36.000 0.00 0.00 0.00 3.16
4613 4753 4.892934 AGACCACAATTAGCAAAGAACCAA 59.107 37.500 0.00 0.00 0.00 3.67
4614 4754 4.469657 AGACCACAATTAGCAAAGAACCA 58.530 39.130 0.00 0.00 0.00 3.67
4615 4755 6.599638 AGATAGACCACAATTAGCAAAGAACC 59.400 38.462 0.00 0.00 0.00 3.62
4616 4756 7.617041 AGATAGACCACAATTAGCAAAGAAC 57.383 36.000 0.00 0.00 0.00 3.01
4617 4757 8.540388 ACTAGATAGACCACAATTAGCAAAGAA 58.460 33.333 0.00 0.00 0.00 2.52
4618 4758 8.079211 ACTAGATAGACCACAATTAGCAAAGA 57.921 34.615 0.00 0.00 0.00 2.52
4619 4759 8.607459 CAACTAGATAGACCACAATTAGCAAAG 58.393 37.037 0.00 0.00 0.00 2.77
4620 4760 7.552687 CCAACTAGATAGACCACAATTAGCAAA 59.447 37.037 0.00 0.00 0.00 3.68
4621 4761 7.047891 CCAACTAGATAGACCACAATTAGCAA 58.952 38.462 0.00 0.00 0.00 3.91
4622 4762 6.382859 TCCAACTAGATAGACCACAATTAGCA 59.617 38.462 0.00 0.00 0.00 3.49
4623 4763 6.702282 GTCCAACTAGATAGACCACAATTAGC 59.298 42.308 0.00 0.00 0.00 3.09
4624 4764 7.707035 GTGTCCAACTAGATAGACCACAATTAG 59.293 40.741 0.00 0.00 0.00 1.73
4625 4765 7.179516 TGTGTCCAACTAGATAGACCACAATTA 59.820 37.037 0.00 0.00 0.00 1.40
4626 4766 6.013725 TGTGTCCAACTAGATAGACCACAATT 60.014 38.462 0.00 0.00 0.00 2.32
4627 4767 5.483937 TGTGTCCAACTAGATAGACCACAAT 59.516 40.000 0.00 0.00 0.00 2.71
4628 4768 4.836175 TGTGTCCAACTAGATAGACCACAA 59.164 41.667 0.00 0.00 0.00 3.33
4629 4769 4.219944 GTGTGTCCAACTAGATAGACCACA 59.780 45.833 0.00 0.00 33.93 4.17
4630 4770 4.219944 TGTGTGTCCAACTAGATAGACCAC 59.780 45.833 0.00 5.20 34.14 4.16
4631 4771 4.412843 TGTGTGTCCAACTAGATAGACCA 58.587 43.478 0.00 0.00 0.00 4.02
4632 4772 5.401531 TTGTGTGTCCAACTAGATAGACC 57.598 43.478 0.00 0.00 0.00 3.85
4633 4773 6.868622 AGATTGTGTGTCCAACTAGATAGAC 58.131 40.000 0.00 0.00 0.00 2.59
4634 4774 6.663523 TGAGATTGTGTGTCCAACTAGATAGA 59.336 38.462 0.00 0.00 0.00 1.98
4635 4775 6.754209 GTGAGATTGTGTGTCCAACTAGATAG 59.246 42.308 0.00 0.00 0.00 2.08
4636 4776 6.625081 CGTGAGATTGTGTGTCCAACTAGATA 60.625 42.308 0.00 0.00 0.00 1.98
4637 4777 5.482908 GTGAGATTGTGTGTCCAACTAGAT 58.517 41.667 0.00 0.00 0.00 1.98
4638 4778 4.558697 CGTGAGATTGTGTGTCCAACTAGA 60.559 45.833 0.00 0.00 0.00 2.43
4639 4779 3.675225 CGTGAGATTGTGTGTCCAACTAG 59.325 47.826 0.00 0.00 0.00 2.57
4640 4780 3.649073 CGTGAGATTGTGTGTCCAACTA 58.351 45.455 0.00 0.00 0.00 2.24
4641 4781 2.483876 CGTGAGATTGTGTGTCCAACT 58.516 47.619 0.00 0.00 0.00 3.16
4642 4782 1.069906 GCGTGAGATTGTGTGTCCAAC 60.070 52.381 0.00 0.00 0.00 3.77
4643 4783 1.225855 GCGTGAGATTGTGTGTCCAA 58.774 50.000 0.00 0.00 0.00 3.53
4644 4784 0.105778 TGCGTGAGATTGTGTGTCCA 59.894 50.000 0.00 0.00 0.00 4.02
4645 4785 0.512952 GTGCGTGAGATTGTGTGTCC 59.487 55.000 0.00 0.00 0.00 4.02
4646 4786 1.217001 TGTGCGTGAGATTGTGTGTC 58.783 50.000 0.00 0.00 0.00 3.67
4647 4787 1.532437 CATGTGCGTGAGATTGTGTGT 59.468 47.619 0.00 0.00 0.00 3.72
4648 4788 1.799994 TCATGTGCGTGAGATTGTGTG 59.200 47.619 0.00 0.00 0.00 3.82
4649 4789 2.168326 TCATGTGCGTGAGATTGTGT 57.832 45.000 0.00 0.00 0.00 3.72
4650 4790 2.481568 ACTTCATGTGCGTGAGATTGTG 59.518 45.455 0.00 0.00 0.00 3.33
4651 4791 2.738846 GACTTCATGTGCGTGAGATTGT 59.261 45.455 0.00 0.00 0.00 2.71
4652 4792 2.738314 TGACTTCATGTGCGTGAGATTG 59.262 45.455 0.00 0.00 0.00 2.67
4653 4793 3.044235 TGACTTCATGTGCGTGAGATT 57.956 42.857 0.00 0.00 0.00 2.40
4654 4794 2.749280 TGACTTCATGTGCGTGAGAT 57.251 45.000 0.00 0.00 0.00 2.75
4655 4795 2.232208 AGATGACTTCATGTGCGTGAGA 59.768 45.455 0.00 0.00 36.57 3.27
4656 4796 2.347755 CAGATGACTTCATGTGCGTGAG 59.652 50.000 3.63 0.00 40.08 3.51
4657 4797 2.340337 CAGATGACTTCATGTGCGTGA 58.660 47.619 3.63 0.00 40.08 4.35
4658 4798 2.800694 CAGATGACTTCATGTGCGTG 57.199 50.000 3.63 0.00 40.08 5.34
4663 4803 5.178252 CAGTTCGAAACAGATGACTTCATGT 59.822 40.000 0.00 0.00 36.57 3.21
4664 4804 5.406477 TCAGTTCGAAACAGATGACTTCATG 59.594 40.000 0.00 0.00 36.57 3.07
4665 4805 5.541845 TCAGTTCGAAACAGATGACTTCAT 58.458 37.500 0.00 0.00 39.70 2.57
4666 4806 4.944048 TCAGTTCGAAACAGATGACTTCA 58.056 39.130 0.00 0.00 0.00 3.02
4667 4807 5.907197 TTCAGTTCGAAACAGATGACTTC 57.093 39.130 0.00 0.00 0.00 3.01
4668 4808 6.316390 ACTTTTCAGTTCGAAACAGATGACTT 59.684 34.615 0.00 0.00 43.35 3.01
4669 4809 5.817816 ACTTTTCAGTTCGAAACAGATGACT 59.182 36.000 0.00 0.00 43.35 3.41
4670 4810 6.049263 ACTTTTCAGTTCGAAACAGATGAC 57.951 37.500 0.00 0.00 43.35 3.06
4671 4811 6.759356 TGTACTTTTCAGTTCGAAACAGATGA 59.241 34.615 0.00 0.00 43.35 2.92
4672 4812 6.943981 TGTACTTTTCAGTTCGAAACAGATG 58.056 36.000 0.00 0.00 43.35 2.90
4673 4813 7.548196 TTGTACTTTTCAGTTCGAAACAGAT 57.452 32.000 0.00 0.00 43.35 2.90
4674 4814 6.971527 TTGTACTTTTCAGTTCGAAACAGA 57.028 33.333 0.00 0.00 43.35 3.41
4675 4815 8.614994 AAATTGTACTTTTCAGTTCGAAACAG 57.385 30.769 0.00 0.00 43.35 3.16
4676 4816 8.973835 AAAATTGTACTTTTCAGTTCGAAACA 57.026 26.923 0.00 0.00 43.35 2.83
4677 4817 8.250445 CGAAAATTGTACTTTTCAGTTCGAAAC 58.750 33.333 16.24 0.00 43.35 2.78
4678 4818 7.044576 GCGAAAATTGTACTTTTCAGTTCGAAA 60.045 33.333 16.24 0.00 42.59 3.46
4679 4819 6.412653 GCGAAAATTGTACTTTTCAGTTCGAA 59.587 34.615 16.24 0.00 42.59 3.71
4680 4820 5.905181 GCGAAAATTGTACTTTTCAGTTCGA 59.095 36.000 16.24 0.00 42.59 3.71
4681 4821 5.679355 TGCGAAAATTGTACTTTTCAGTTCG 59.321 36.000 16.24 12.20 42.59 3.95
4682 4822 6.691388 AGTGCGAAAATTGTACTTTTCAGTTC 59.309 34.615 16.24 7.11 42.59 3.01
4683 4823 6.560711 AGTGCGAAAATTGTACTTTTCAGTT 58.439 32.000 16.24 1.82 42.59 3.16
4684 4824 6.038271 AGAGTGCGAAAATTGTACTTTTCAGT 59.962 34.615 16.24 5.58 42.59 3.41
4685 4825 6.430451 AGAGTGCGAAAATTGTACTTTTCAG 58.570 36.000 16.24 11.46 42.59 3.02
4686 4826 6.371809 AGAGTGCGAAAATTGTACTTTTCA 57.628 33.333 16.24 1.35 42.59 2.69
4687 4827 8.068380 AGTAAGAGTGCGAAAATTGTACTTTTC 58.932 33.333 9.28 9.28 40.26 2.29
4688 4828 7.927048 AGTAAGAGTGCGAAAATTGTACTTTT 58.073 30.769 0.00 0.00 32.19 2.27
4689 4829 7.492352 AGTAAGAGTGCGAAAATTGTACTTT 57.508 32.000 0.00 0.00 32.19 2.66
4690 4830 7.492352 AAGTAAGAGTGCGAAAATTGTACTT 57.508 32.000 0.00 0.00 32.19 2.24
4691 4831 8.773404 ATAAGTAAGAGTGCGAAAATTGTACT 57.227 30.769 0.00 0.00 34.86 2.73
4692 4832 8.653338 TGATAAGTAAGAGTGCGAAAATTGTAC 58.347 33.333 0.00 0.00 0.00 2.90
4693 4833 8.766000 TGATAAGTAAGAGTGCGAAAATTGTA 57.234 30.769 0.00 0.00 0.00 2.41
4694 4834 7.387948 ACTGATAAGTAAGAGTGCGAAAATTGT 59.612 33.333 0.00 0.00 0.00 2.71
4695 4835 7.743104 ACTGATAAGTAAGAGTGCGAAAATTG 58.257 34.615 0.00 0.00 0.00 2.32
4696 4836 7.907214 ACTGATAAGTAAGAGTGCGAAAATT 57.093 32.000 0.00 0.00 0.00 1.82
4697 4837 7.602644 TCAACTGATAAGTAAGAGTGCGAAAAT 59.397 33.333 0.00 0.00 0.00 1.82
4698 4838 6.926826 TCAACTGATAAGTAAGAGTGCGAAAA 59.073 34.615 0.00 0.00 0.00 2.29
4699 4839 6.452242 TCAACTGATAAGTAAGAGTGCGAAA 58.548 36.000 0.00 0.00 0.00 3.46
4700 4840 6.020971 TCAACTGATAAGTAAGAGTGCGAA 57.979 37.500 0.00 0.00 0.00 4.70
4701 4841 5.393135 CCTCAACTGATAAGTAAGAGTGCGA 60.393 44.000 10.29 0.00 0.00 5.10
4702 4842 4.800993 CCTCAACTGATAAGTAAGAGTGCG 59.199 45.833 10.29 0.00 0.00 5.34
4703 4843 5.105310 TCCCTCAACTGATAAGTAAGAGTGC 60.105 44.000 10.29 0.00 0.00 4.40
4704 4844 6.153680 AGTCCCTCAACTGATAAGTAAGAGTG 59.846 42.308 10.29 1.84 0.00 3.51
4705 4845 6.257586 AGTCCCTCAACTGATAAGTAAGAGT 58.742 40.000 10.29 0.00 0.00 3.24
4706 4846 6.783708 AGTCCCTCAACTGATAAGTAAGAG 57.216 41.667 5.86 5.86 0.00 2.85
4707 4847 7.894364 ACTTAGTCCCTCAACTGATAAGTAAGA 59.106 37.037 12.79 0.00 28.54 2.10
4708 4848 8.068892 ACTTAGTCCCTCAACTGATAAGTAAG 57.931 38.462 2.34 5.59 28.54 2.34
4709 4849 8.431910 AACTTAGTCCCTCAACTGATAAGTAA 57.568 34.615 4.08 0.00 29.64 2.24
4710 4850 8.431910 AAACTTAGTCCCTCAACTGATAAGTA 57.568 34.615 4.08 0.00 29.64 2.24
4711 4851 6.936968 AACTTAGTCCCTCAACTGATAAGT 57.063 37.500 0.00 0.00 30.52 2.24
4712 4852 8.622948 AAAAACTTAGTCCCTCAACTGATAAG 57.377 34.615 0.00 0.00 0.00 1.73
4762 4902 5.179555 GTGTCGAACCTTCTGCTAGATTTTT 59.820 40.000 0.00 0.00 0.00 1.94
4763 4903 4.691216 GTGTCGAACCTTCTGCTAGATTTT 59.309 41.667 0.00 0.00 0.00 1.82
4764 4904 4.021016 AGTGTCGAACCTTCTGCTAGATTT 60.021 41.667 0.00 0.00 0.00 2.17
4765 4905 3.511934 AGTGTCGAACCTTCTGCTAGATT 59.488 43.478 0.00 0.00 0.00 2.40
4766 4906 3.093057 AGTGTCGAACCTTCTGCTAGAT 58.907 45.455 0.00 0.00 0.00 1.98
4767 4907 2.488545 GAGTGTCGAACCTTCTGCTAGA 59.511 50.000 0.00 0.00 0.00 2.43
4768 4908 2.490115 AGAGTGTCGAACCTTCTGCTAG 59.510 50.000 0.00 0.00 0.00 3.42
4769 4909 2.515854 AGAGTGTCGAACCTTCTGCTA 58.484 47.619 0.00 0.00 0.00 3.49
4770 4910 1.333177 AGAGTGTCGAACCTTCTGCT 58.667 50.000 0.00 0.00 0.00 4.24
4771 4911 2.156343 AAGAGTGTCGAACCTTCTGC 57.844 50.000 0.00 0.00 0.00 4.26
4772 4912 4.506886 AGTAAGAGTGTCGAACCTTCTG 57.493 45.455 0.00 0.00 0.00 3.02
4773 4913 6.403418 CGATAAGTAAGAGTGTCGAACCTTCT 60.403 42.308 0.00 0.00 0.00 2.85
4774 4914 5.738225 CGATAAGTAAGAGTGTCGAACCTTC 59.262 44.000 0.00 0.00 0.00 3.46
4775 4915 5.413833 TCGATAAGTAAGAGTGTCGAACCTT 59.586 40.000 0.00 0.00 35.48 3.50
4776 4916 4.940046 TCGATAAGTAAGAGTGTCGAACCT 59.060 41.667 0.00 0.00 35.48 3.50
4777 4917 5.227238 TCGATAAGTAAGAGTGTCGAACC 57.773 43.478 0.00 0.00 35.48 3.62
4778 4918 7.020010 TCTTTCGATAAGTAAGAGTGTCGAAC 58.980 38.462 7.42 0.00 44.53 3.95
4779 4919 7.137490 TCTTTCGATAAGTAAGAGTGTCGAA 57.863 36.000 4.17 4.17 43.60 3.71
4780 4920 6.183360 CCTCTTTCGATAAGTAAGAGTGTCGA 60.183 42.308 18.03 0.00 46.54 4.20
4781 4921 5.966503 CCTCTTTCGATAAGTAAGAGTGTCG 59.033 44.000 18.03 4.16 46.54 4.35
4782 4922 5.744819 GCCTCTTTCGATAAGTAAGAGTGTC 59.255 44.000 18.03 7.30 46.54 3.67
4783 4923 5.419471 AGCCTCTTTCGATAAGTAAGAGTGT 59.581 40.000 18.03 6.31 46.54 3.55
4784 4924 5.897050 AGCCTCTTTCGATAAGTAAGAGTG 58.103 41.667 18.03 12.41 46.54 3.51
4785 4925 6.602406 TGTAGCCTCTTTCGATAAGTAAGAGT 59.398 38.462 18.03 7.32 46.54 3.24
4787 4927 7.400599 TTGTAGCCTCTTTCGATAAGTAAGA 57.599 36.000 0.00 0.00 35.42 2.10
4788 4928 8.543774 CAATTGTAGCCTCTTTCGATAAGTAAG 58.456 37.037 0.00 0.00 0.00 2.34
4789 4929 8.255206 TCAATTGTAGCCTCTTTCGATAAGTAA 58.745 33.333 5.13 0.00 0.00 2.24
4790 4930 7.778083 TCAATTGTAGCCTCTTTCGATAAGTA 58.222 34.615 5.13 0.00 0.00 2.24
4791 4931 6.640518 TCAATTGTAGCCTCTTTCGATAAGT 58.359 36.000 5.13 0.00 0.00 2.24
4792 4932 7.095439 GGATCAATTGTAGCCTCTTTCGATAAG 60.095 40.741 5.13 0.00 0.00 1.73
4793 4933 6.706270 GGATCAATTGTAGCCTCTTTCGATAA 59.294 38.462 5.13 0.00 0.00 1.75
4794 4934 6.223852 GGATCAATTGTAGCCTCTTTCGATA 58.776 40.000 5.13 0.00 0.00 2.92
4795 4935 5.059833 GGATCAATTGTAGCCTCTTTCGAT 58.940 41.667 5.13 0.00 0.00 3.59
4796 4936 4.442706 GGATCAATTGTAGCCTCTTTCGA 58.557 43.478 5.13 0.00 0.00 3.71
4797 4937 3.561725 GGGATCAATTGTAGCCTCTTTCG 59.438 47.826 5.13 0.00 0.00 3.46
4798 4938 3.885901 GGGGATCAATTGTAGCCTCTTTC 59.114 47.826 5.13 0.00 0.00 2.62
4799 4939 3.529319 AGGGGATCAATTGTAGCCTCTTT 59.471 43.478 5.13 0.00 0.00 2.52
4800 4940 3.126453 AGGGGATCAATTGTAGCCTCTT 58.874 45.455 5.13 0.00 0.00 2.85
4801 4941 2.781667 AGGGGATCAATTGTAGCCTCT 58.218 47.619 5.13 7.01 0.00 3.69
4802 4942 4.917906 ATAGGGGATCAATTGTAGCCTC 57.082 45.455 5.13 4.74 0.00 4.70
4803 4943 5.415961 AGTATAGGGGATCAATTGTAGCCT 58.584 41.667 5.13 0.00 0.00 4.58
4804 4944 5.763876 AGTATAGGGGATCAATTGTAGCC 57.236 43.478 5.13 4.61 0.00 3.93
4805 4945 6.428159 CACAAGTATAGGGGATCAATTGTAGC 59.572 42.308 5.13 0.00 0.00 3.58
4806 4946 6.936900 CCACAAGTATAGGGGATCAATTGTAG 59.063 42.308 5.13 0.00 0.00 2.74
4807 4947 6.183361 CCCACAAGTATAGGGGATCAATTGTA 60.183 42.308 5.13 0.00 43.57 2.41
4808 4948 5.399038 CCCACAAGTATAGGGGATCAATTGT 60.399 44.000 5.13 0.00 43.57 2.71
4809 4949 5.072741 CCCACAAGTATAGGGGATCAATTG 58.927 45.833 0.00 0.00 43.57 2.32
4810 4950 5.324832 CCCACAAGTATAGGGGATCAATT 57.675 43.478 0.00 0.00 43.57 2.32
4819 4959 6.099845 AGGTCTTGATAACCCACAAGTATAGG 59.900 42.308 0.00 0.00 42.50 2.57
4820 4960 7.125792 AGGTCTTGATAACCCACAAGTATAG 57.874 40.000 0.00 0.00 42.50 1.31
4821 4961 7.504926 AAGGTCTTGATAACCCACAAGTATA 57.495 36.000 0.00 0.00 42.50 1.47
4822 4962 6.388619 AAGGTCTTGATAACCCACAAGTAT 57.611 37.500 0.00 0.00 42.50 2.12
4823 4963 5.836024 AAGGTCTTGATAACCCACAAGTA 57.164 39.130 0.00 0.00 42.50 2.24
4824 4964 4.724279 AAGGTCTTGATAACCCACAAGT 57.276 40.909 0.00 0.00 42.50 3.16
4825 4965 6.265422 AGAAAAAGGTCTTGATAACCCACAAG 59.735 38.462 0.00 0.00 43.03 3.16
4826 4966 6.040391 CAGAAAAAGGTCTTGATAACCCACAA 59.960 38.462 0.00 0.00 37.52 3.33
4827 4967 5.534654 CAGAAAAAGGTCTTGATAACCCACA 59.465 40.000 0.00 0.00 37.52 4.17
4828 4968 5.048013 CCAGAAAAAGGTCTTGATAACCCAC 60.048 44.000 0.00 0.00 37.52 4.61
4829 4969 5.076873 CCAGAAAAAGGTCTTGATAACCCA 58.923 41.667 0.00 0.00 37.52 4.51
4830 4970 4.082190 GCCAGAAAAAGGTCTTGATAACCC 60.082 45.833 0.00 0.00 37.52 4.11
4831 4971 4.379499 CGCCAGAAAAAGGTCTTGATAACC 60.379 45.833 0.00 0.00 37.03 2.85
4832 4972 4.723248 CGCCAGAAAAAGGTCTTGATAAC 58.277 43.478 0.00 0.00 0.00 1.89
4833 4973 3.190535 GCGCCAGAAAAAGGTCTTGATAA 59.809 43.478 0.00 0.00 0.00 1.75
4834 4974 2.747446 GCGCCAGAAAAAGGTCTTGATA 59.253 45.455 0.00 0.00 0.00 2.15
4835 4975 1.541588 GCGCCAGAAAAAGGTCTTGAT 59.458 47.619 0.00 0.00 0.00 2.57
4836 4976 0.951558 GCGCCAGAAAAAGGTCTTGA 59.048 50.000 0.00 0.00 0.00 3.02
4837 4977 0.039165 GGCGCCAGAAAAAGGTCTTG 60.039 55.000 24.80 0.00 0.00 3.02
4838 4978 1.515521 CGGCGCCAGAAAAAGGTCTT 61.516 55.000 28.98 0.00 0.00 3.01
4839 4979 1.966451 CGGCGCCAGAAAAAGGTCT 60.966 57.895 28.98 0.00 0.00 3.85
4840 4980 1.792118 AACGGCGCCAGAAAAAGGTC 61.792 55.000 28.98 0.00 0.00 3.85
4841 4981 1.826487 AACGGCGCCAGAAAAAGGT 60.826 52.632 28.98 10.68 0.00 3.50
4842 4982 1.371635 CAACGGCGCCAGAAAAAGG 60.372 57.895 28.98 9.93 0.00 3.11
4843 4983 2.016165 GCAACGGCGCCAGAAAAAG 61.016 57.895 28.98 10.77 0.00 2.27
4844 4984 2.026879 GCAACGGCGCCAGAAAAA 59.973 55.556 28.98 0.00 0.00 1.94
4857 4997 0.179468 TGCTATAACTCCCCGGCAAC 59.821 55.000 0.00 0.00 0.00 4.17
4858 4998 1.136828 ATGCTATAACTCCCCGGCAA 58.863 50.000 0.00 0.00 33.44 4.52
4859 4999 0.396435 CATGCTATAACTCCCCGGCA 59.604 55.000 0.00 0.00 0.00 5.69
4860 5000 0.396811 ACATGCTATAACTCCCCGGC 59.603 55.000 0.00 0.00 0.00 6.13
4861 5001 1.270839 CCACATGCTATAACTCCCCGG 60.271 57.143 0.00 0.00 0.00 5.73
4862 5002 1.416401 ACCACATGCTATAACTCCCCG 59.584 52.381 0.00 0.00 0.00 5.73
4863 5003 2.438021 TCACCACATGCTATAACTCCCC 59.562 50.000 0.00 0.00 0.00 4.81
4864 5004 3.838244 TCACCACATGCTATAACTCCC 57.162 47.619 0.00 0.00 0.00 4.30
4865 5005 7.880195 AGAATATTCACCACATGCTATAACTCC 59.120 37.037 17.56 0.00 0.00 3.85
4866 5006 8.839310 AGAATATTCACCACATGCTATAACTC 57.161 34.615 17.56 0.00 0.00 3.01
4867 5007 7.600375 CGAGAATATTCACCACATGCTATAACT 59.400 37.037 17.56 0.00 0.00 2.24
4868 5008 7.385205 ACGAGAATATTCACCACATGCTATAAC 59.615 37.037 17.56 0.00 0.00 1.89
4869 5009 7.384932 CACGAGAATATTCACCACATGCTATAA 59.615 37.037 17.56 0.00 0.00 0.98
4870 5010 6.868339 CACGAGAATATTCACCACATGCTATA 59.132 38.462 17.56 0.00 0.00 1.31
4871 5011 5.698089 CACGAGAATATTCACCACATGCTAT 59.302 40.000 17.56 0.00 0.00 2.97
4872 5012 5.049828 CACGAGAATATTCACCACATGCTA 58.950 41.667 17.56 0.00 0.00 3.49
4873 5013 3.873361 CACGAGAATATTCACCACATGCT 59.127 43.478 17.56 0.00 0.00 3.79
4874 5014 3.623060 ACACGAGAATATTCACCACATGC 59.377 43.478 17.56 0.00 0.00 4.06
4875 5015 4.631377 ACACACGAGAATATTCACCACATG 59.369 41.667 17.56 10.22 0.00 3.21
4876 5016 4.631377 CACACACGAGAATATTCACCACAT 59.369 41.667 17.56 0.00 0.00 3.21
4877 5017 3.993736 CACACACGAGAATATTCACCACA 59.006 43.478 17.56 0.00 0.00 4.17
4878 5018 3.181520 GCACACACGAGAATATTCACCAC 60.182 47.826 17.56 5.33 0.00 4.16
4879 5019 3.000041 GCACACACGAGAATATTCACCA 59.000 45.455 17.56 0.00 0.00 4.17
4880 5020 3.262420 AGCACACACGAGAATATTCACC 58.738 45.455 17.56 7.83 0.00 4.02
4881 5021 4.152402 ACAAGCACACACGAGAATATTCAC 59.848 41.667 17.56 10.30 0.00 3.18
4882 5022 4.314961 ACAAGCACACACGAGAATATTCA 58.685 39.130 17.56 0.00 0.00 2.57
4883 5023 4.928661 ACAAGCACACACGAGAATATTC 57.071 40.909 7.41 7.41 0.00 1.75
4884 5024 5.451908 CAAACAAGCACACACGAGAATATT 58.548 37.500 0.00 0.00 0.00 1.28
4885 5025 4.613622 GCAAACAAGCACACACGAGAATAT 60.614 41.667 0.00 0.00 0.00 1.28
4886 5026 3.303725 GCAAACAAGCACACACGAGAATA 60.304 43.478 0.00 0.00 0.00 1.75
4887 5027 2.541588 GCAAACAAGCACACACGAGAAT 60.542 45.455 0.00 0.00 0.00 2.40
4888 5028 1.202132 GCAAACAAGCACACACGAGAA 60.202 47.619 0.00 0.00 0.00 2.87
4889 5029 0.376852 GCAAACAAGCACACACGAGA 59.623 50.000 0.00 0.00 0.00 4.04
4890 5030 0.378257 AGCAAACAAGCACACACGAG 59.622 50.000 0.00 0.00 36.85 4.18
4891 5031 0.808125 AAGCAAACAAGCACACACGA 59.192 45.000 0.00 0.00 36.85 4.35
4892 5032 1.627879 AAAGCAAACAAGCACACACG 58.372 45.000 0.00 0.00 36.85 4.49
4893 5033 4.207019 GTGATAAAGCAAACAAGCACACAC 59.793 41.667 0.00 0.00 36.85 3.82
4894 5034 4.097741 AGTGATAAAGCAAACAAGCACACA 59.902 37.500 0.00 0.00 36.85 3.72
4895 5035 4.610945 AGTGATAAAGCAAACAAGCACAC 58.389 39.130 0.00 0.00 36.85 3.82
4896 5036 4.916983 AGTGATAAAGCAAACAAGCACA 57.083 36.364 0.00 0.00 36.85 4.57
4897 5037 6.438763 ACTTAGTGATAAAGCAAACAAGCAC 58.561 36.000 0.00 0.00 36.85 4.40
4898 5038 6.633500 ACTTAGTGATAAAGCAAACAAGCA 57.367 33.333 0.00 0.00 36.85 3.91
4899 5039 9.626045 AATTACTTAGTGATAAAGCAAACAAGC 57.374 29.630 0.00 0.00 0.00 4.01
4952 5092 9.923143 CGTGTTCCATATCCATAACTAAAGATA 57.077 33.333 0.00 0.00 0.00 1.98
4953 5093 8.647796 TCGTGTTCCATATCCATAACTAAAGAT 58.352 33.333 0.00 0.00 0.00 2.40
4954 5094 8.014070 TCGTGTTCCATATCCATAACTAAAGA 57.986 34.615 0.00 0.00 0.00 2.52
4955 5095 8.657074 TTCGTGTTCCATATCCATAACTAAAG 57.343 34.615 0.00 0.00 0.00 1.85
4956 5096 9.621629 ATTTCGTGTTCCATATCCATAACTAAA 57.378 29.630 0.00 0.00 0.00 1.85
4958 5098 9.701098 GTATTTCGTGTTCCATATCCATAACTA 57.299 33.333 0.00 0.00 0.00 2.24
4959 5099 7.660208 GGTATTTCGTGTTCCATATCCATAACT 59.340 37.037 0.00 0.00 0.00 2.24
4960 5100 7.442969 TGGTATTTCGTGTTCCATATCCATAAC 59.557 37.037 0.00 0.00 0.00 1.89
4961 5101 7.510407 TGGTATTTCGTGTTCCATATCCATAA 58.490 34.615 0.00 0.00 0.00 1.90
4962 5102 7.068686 TGGTATTTCGTGTTCCATATCCATA 57.931 36.000 0.00 0.00 0.00 2.74
4963 5103 5.935945 TGGTATTTCGTGTTCCATATCCAT 58.064 37.500 0.00 0.00 0.00 3.41
4964 5104 5.360649 TGGTATTTCGTGTTCCATATCCA 57.639 39.130 0.00 0.00 0.00 3.41
4965 5105 6.687081 TTTGGTATTTCGTGTTCCATATCC 57.313 37.500 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.