Multiple sequence alignment - TraesCS6D01G396500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G396500 chr6D 100.000 6449 0 0 1 6449 468838739 468845187 0.000000e+00 11910.0
1 TraesCS6D01G396500 chr6D 90.667 75 4 2 82 156 341149875 341149804 5.320000e-16 97.1
2 TraesCS6D01G396500 chr6D 87.013 77 8 2 82 157 447094482 447094407 1.150000e-12 86.1
3 TraesCS6D01G396500 chr6B 94.822 1989 68 14 4494 6449 714636091 714638077 0.000000e+00 3070.0
4 TraesCS6D01G396500 chr6B 93.429 1750 93 7 2647 4378 714634159 714635904 0.000000e+00 2575.0
5 TraesCS6D01G396500 chr6B 82.340 906 106 16 16 888 714631304 714632188 0.000000e+00 737.0
6 TraesCS6D01G396500 chr6B 96.164 391 13 1 2030 2420 714633768 714634156 7.050000e-179 638.0
7 TraesCS6D01G396500 chr6B 90.491 326 18 6 1440 1760 714632959 714633276 1.000000e-112 418.0
8 TraesCS6D01G396500 chr6B 83.784 444 37 20 974 1404 714632536 714632957 7.840000e-104 388.0
9 TraesCS6D01G396500 chr6B 89.815 216 13 2 1787 2002 714633566 714633772 1.070000e-67 268.0
10 TraesCS6D01G396500 chr6B 89.209 139 9 2 6264 6402 714960657 714960789 1.110000e-37 169.0
11 TraesCS6D01G396500 chr6B 95.385 65 3 0 6385 6449 714960804 714960868 3.180000e-18 104.0
12 TraesCS6D01G396500 chr6B 97.059 34 0 1 4463 4495 714635903 714635936 1.000000e-03 56.5
13 TraesCS6D01G396500 chrUn 84.997 1753 196 40 2018 3739 75181630 75179914 0.000000e+00 1718.0
14 TraesCS6D01G396500 chrUn 96.539 809 27 1 4494 5302 75178892 75178085 0.000000e+00 1338.0
15 TraesCS6D01G396500 chrUn 90.608 905 35 18 5117 5998 75178027 75177150 0.000000e+00 1155.0
16 TraesCS6D01G396500 chrUn 87.967 482 26 18 561 1039 75183172 75182720 2.050000e-149 540.0
17 TraesCS6D01G396500 chrUn 88.274 307 36 0 6141 6447 75176827 75176521 1.020000e-97 368.0
18 TraesCS6D01G396500 chrUn 80.139 433 68 15 3741 4166 75179590 75179169 2.260000e-79 307.0
19 TraesCS6D01G396500 chr7B 76.793 237 38 10 74 297 97636791 97636559 4.090000e-22 117.0
20 TraesCS6D01G396500 chr7B 90.769 65 3 3 1140 1202 652133261 652133198 4.140000e-12 84.2
21 TraesCS6D01G396500 chr3B 88.506 87 10 0 79 165 648896855 648896941 8.840000e-19 106.0
22 TraesCS6D01G396500 chr3B 85.366 82 10 2 1124 1203 561542813 561542894 4.140000e-12 84.2
23 TraesCS6D01G396500 chr3D 91.176 68 6 0 85 152 517155160 517155227 6.880000e-15 93.5
24 TraesCS6D01G396500 chr2A 87.654 81 9 1 1124 1203 608647353 608647273 6.880000e-15 93.5
25 TraesCS6D01G396500 chr3A 79.592 147 15 8 16 156 629627851 629627988 2.480000e-14 91.6
26 TraesCS6D01G396500 chr5D 90.000 70 6 1 1134 1202 115410354 115410285 8.910000e-14 89.8
27 TraesCS6D01G396500 chr2B 86.747 83 8 3 79 160 410998571 410998651 8.910000e-14 89.8
28 TraesCS6D01G396500 chr2B 86.420 81 10 1 1124 1203 546987566 546987486 3.200000e-13 87.9
29 TraesCS6D01G396500 chr5B 86.420 81 9 1 77 157 515182406 515182484 3.200000e-13 87.9
30 TraesCS6D01G396500 chr5A 87.324 71 8 1 1134 1203 564602370 564602300 5.360000e-11 80.5
31 TraesCS6D01G396500 chr1A 85.000 80 11 1 1124 1202 304031967 304031888 5.360000e-11 80.5
32 TraesCS6D01G396500 chr2D 83.951 81 11 2 1124 1203 467971421 467971342 6.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G396500 chr6D 468838739 468845187 6448 False 11910.000000 11910 100.000000 1 6449 1 chr6D.!!$F1 6448
1 TraesCS6D01G396500 chr6B 714631304 714638077 6773 False 1018.812500 3070 90.988000 16 6449 8 chr6B.!!$F1 6433
2 TraesCS6D01G396500 chrUn 75176521 75183172 6651 True 904.333333 1718 88.087333 561 6447 6 chrUn.!!$R1 5886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 395 0.178975 ACCCGAATGTTTGAGGCCAA 60.179 50.000 5.01 0.00 0.00 4.52 F
862 896 0.249120 TCTACCGACTGCAACCCATG 59.751 55.000 0.00 0.00 0.00 3.66 F
1258 1559 0.321298 GTTTCTCTGCCTTGGCGGTA 60.321 55.000 18.73 7.18 34.25 4.02 F
2640 3640 0.038892 GTTCAATGTGTGCTGCCAGG 60.039 55.000 0.00 0.00 0.00 4.45 F
2981 3988 0.107410 TTACCATTGGCACGCTAGGG 60.107 55.000 5.05 5.05 0.00 3.53 F
3629 4636 0.239347 CGGCCAAGAGCAAGTTTCAG 59.761 55.000 2.24 0.00 46.50 3.02 F
4525 6103 1.878775 GCTGCCAAGTGCCAACTAG 59.121 57.895 0.00 0.00 40.16 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1684 0.035630 CTGCCAAGTGAGAAGAGGGG 60.036 60.0 0.00 0.00 0.00 4.79 R
2432 3426 0.271927 AGGCCCTATCATCTCCCCAA 59.728 55.0 0.00 0.00 0.00 4.12 R
2981 3988 0.028902 GGACATTAATGGCGGCGAAC 59.971 55.0 19.37 2.36 36.40 3.95 R
4492 5913 0.098728 GCAGCCGTACGCATTGATTT 59.901 50.0 10.49 0.00 41.38 2.17 R
4735 6313 5.639506 CGCTTCTTCCTTTGAATGAACTCTA 59.360 40.0 0.00 0.00 0.00 2.43 R
4995 6573 1.605058 GCCGTTGAGCTCCTCACCTA 61.605 60.0 12.15 0.00 40.46 3.08 R
5954 7791 0.446222 ATCAATCGGAAAACACGGCG 59.554 50.0 4.80 4.80 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.429141 CTTGTGGAGCTGCGCCAG 61.429 66.667 25.66 10.96 33.24 4.85
62 63 1.457831 ACGGGAGCAGGGTAGATCC 60.458 63.158 0.00 0.00 43.27 3.36
64 65 1.152525 GGGAGCAGGGTAGATCCGA 60.153 63.158 0.00 0.00 44.91 4.55
69 70 0.249657 GCAGGGTAGATCCGAAGCTG 60.250 60.000 0.00 0.00 37.00 4.24
72 73 1.069935 GGTAGATCCGAAGCTGCCC 59.930 63.158 0.00 0.00 37.68 5.36
129 130 3.991924 ATGCGGAGGGTCAGCTCCT 62.992 63.158 0.00 0.00 38.41 3.69
133 134 2.888863 GAGGGTCAGCTCCTCGTG 59.111 66.667 4.31 0.00 41.01 4.35
145 146 2.611518 CTCCTCGTGGATGTTGAGTTC 58.388 52.381 6.68 0.00 42.29 3.01
153 154 1.079127 ATGTTGAGTTCGGAGCCGG 60.079 57.895 9.29 0.00 40.25 6.13
168 181 1.227089 CCGGAGCTCGACATCCTTG 60.227 63.158 7.83 0.00 42.43 3.61
171 184 1.880340 GAGCTCGACATCCTTGCCG 60.880 63.158 0.00 0.00 0.00 5.69
173 186 2.202932 CTCGACATCCTTGCCGGG 60.203 66.667 2.18 0.00 28.80 5.73
208 221 1.651737 TCAAATCGGAGAGGGGACAA 58.348 50.000 0.00 0.00 43.63 3.18
235 248 5.335269 CGAAAGAGAAGAGTGAACTGAGCTA 60.335 44.000 0.00 0.00 0.00 3.32
242 255 2.829120 GAGTGAACTGAGCTAGGGTTCT 59.171 50.000 19.53 7.17 39.73 3.01
245 258 1.903183 GAACTGAGCTAGGGTTCTGGT 59.097 52.381 14.67 0.00 37.11 4.00
248 261 3.517612 ACTGAGCTAGGGTTCTGGTTTA 58.482 45.455 0.00 0.00 0.00 2.01
273 287 3.449746 TTTTGTGGGAATGGAGTAGGG 57.550 47.619 0.00 0.00 0.00 3.53
284 298 1.442148 GAGTAGGGTCGGTGATGGC 59.558 63.158 0.00 0.00 0.00 4.40
286 300 2.039787 TAGGGTCGGTGATGGCCA 59.960 61.111 8.56 8.56 0.00 5.36
287 301 1.383943 TAGGGTCGGTGATGGCCAT 60.384 57.895 20.96 20.96 0.00 4.40
289 303 3.211963 GGTCGGTGATGGCCATGC 61.212 66.667 26.56 15.62 0.00 4.06
291 305 2.124612 TCGGTGATGGCCATGCTG 60.125 61.111 26.56 19.97 0.00 4.41
292 306 2.124612 CGGTGATGGCCATGCTGA 60.125 61.111 26.56 0.43 0.00 4.26
293 307 2.475466 CGGTGATGGCCATGCTGAC 61.475 63.158 26.56 13.65 0.00 3.51
294 308 2.475466 GGTGATGGCCATGCTGACG 61.475 63.158 26.56 0.00 0.00 4.35
295 309 1.746615 GTGATGGCCATGCTGACGT 60.747 57.895 26.56 0.00 0.00 4.34
296 310 1.746239 TGATGGCCATGCTGACGTG 60.746 57.895 26.56 0.00 0.00 4.49
301 315 2.347114 CCATGCTGACGTGGTGGA 59.653 61.111 0.00 0.00 46.39 4.02
302 316 1.078214 CCATGCTGACGTGGTGGAT 60.078 57.895 0.00 0.00 46.39 3.41
303 317 1.371337 CCATGCTGACGTGGTGGATG 61.371 60.000 0.00 0.00 46.39 3.51
305 319 1.552799 ATGCTGACGTGGTGGATGGA 61.553 55.000 0.00 0.00 0.00 3.41
306 320 1.741770 GCTGACGTGGTGGATGGAC 60.742 63.158 0.00 0.00 0.00 4.02
309 323 3.659089 GACGTGGTGGATGGACCCG 62.659 68.421 0.00 0.00 38.00 5.28
310 324 4.467084 CGTGGTGGATGGACCCGG 62.467 72.222 0.00 0.00 38.00 5.73
329 344 2.460853 CCGGCCCATATCCACCCTT 61.461 63.158 0.00 0.00 0.00 3.95
336 351 3.233507 CCCATATCCACCCTTCATTTGG 58.766 50.000 0.00 0.00 0.00 3.28
347 362 2.895404 CCTTCATTTGGGCTGGATATGG 59.105 50.000 0.00 0.00 0.00 2.74
348 363 3.569491 CTTCATTTGGGCTGGATATGGT 58.431 45.455 0.00 0.00 0.00 3.55
349 364 2.948115 TCATTTGGGCTGGATATGGTG 58.052 47.619 0.00 0.00 0.00 4.17
353 368 1.071471 GGGCTGGATATGGTGGACG 59.929 63.158 0.00 0.00 0.00 4.79
354 369 1.598130 GGCTGGATATGGTGGACGC 60.598 63.158 0.00 0.00 0.00 5.19
357 372 2.030562 GGATATGGTGGACGCCGG 59.969 66.667 0.00 0.00 0.00 6.13
359 374 1.300697 GATATGGTGGACGCCGGAC 60.301 63.158 5.05 0.00 0.00 4.79
361 376 1.618876 ATATGGTGGACGCCGGACAA 61.619 55.000 5.05 0.00 0.00 3.18
376 391 1.539827 GGACAACCCGAATGTTTGAGG 59.460 52.381 0.00 0.00 0.00 3.86
380 395 0.178975 ACCCGAATGTTTGAGGCCAA 60.179 50.000 5.01 0.00 0.00 4.52
389 404 6.418057 AATGTTTGAGGCCAATTTAAGACA 57.582 33.333 5.01 0.00 31.46 3.41
392 407 4.846779 TTGAGGCCAATTTAAGACACAC 57.153 40.909 5.01 0.00 0.00 3.82
401 416 6.258160 CCAATTTAAGACACACGATTGGATC 58.742 40.000 7.02 0.00 43.80 3.36
427 445 4.444838 TGACCGGTCATTCGCCCG 62.445 66.667 33.23 0.00 43.82 6.13
453 471 1.186200 TGAGGCGCTTGACTGTAGAT 58.814 50.000 7.64 0.00 0.00 1.98
454 472 1.134995 TGAGGCGCTTGACTGTAGATG 60.135 52.381 7.64 0.00 0.00 2.90
457 475 1.661112 GGCGCTTGACTGTAGATGTTC 59.339 52.381 7.64 0.00 0.00 3.18
458 476 2.611518 GCGCTTGACTGTAGATGTTCT 58.388 47.619 0.00 0.00 0.00 3.01
465 483 7.116376 CGCTTGACTGTAGATGTTCTAAGAAAA 59.884 37.037 0.00 0.00 29.58 2.29
483 501 5.449553 AGAAAAACAGAACTTCACCTGGAT 58.550 37.500 0.00 0.00 34.85 3.41
498 516 5.014123 TCACCTGGATTTAACCATTCTGTCT 59.986 40.000 0.00 0.00 39.34 3.41
527 545 2.318578 CCACGTCGCGACTTTACTTTA 58.681 47.619 33.94 0.00 0.00 1.85
531 549 4.028428 CACGTCGCGACTTTACTTTAGTAC 59.972 45.833 33.94 6.22 0.00 2.73
532 550 4.083802 ACGTCGCGACTTTACTTTAGTACT 60.084 41.667 33.94 0.00 0.00 2.73
533 551 4.490191 CGTCGCGACTTTACTTTAGTACTC 59.510 45.833 33.94 4.54 0.00 2.59
567 595 7.092533 CCTGGATGGATGGATGGATATATATCC 60.093 44.444 28.33 28.33 44.60 2.59
599 627 0.586319 CAAAAGCACCACACGATCGT 59.414 50.000 16.60 16.60 0.00 3.73
645 679 1.742831 GTGAGAGCGAGATCACTGACT 59.257 52.381 0.00 0.00 42.06 3.41
682 716 2.027073 GCACGTTGCGGTGAGATGA 61.027 57.895 6.55 0.00 40.38 2.92
683 717 1.959899 GCACGTTGCGGTGAGATGAG 61.960 60.000 6.55 0.00 40.38 2.90
684 718 0.388520 CACGTTGCGGTGAGATGAGA 60.389 55.000 0.00 0.00 40.38 3.27
685 719 0.532573 ACGTTGCGGTGAGATGAGAT 59.467 50.000 0.00 0.00 0.00 2.75
686 720 0.926155 CGTTGCGGTGAGATGAGATG 59.074 55.000 0.00 0.00 0.00 2.90
687 721 0.654683 GTTGCGGTGAGATGAGATGC 59.345 55.000 0.00 0.00 0.00 3.91
862 896 0.249120 TCTACCGACTGCAACCCATG 59.751 55.000 0.00 0.00 0.00 3.66
907 941 0.543749 ATCTGCAGTGCCTACCTTCC 59.456 55.000 14.67 0.00 0.00 3.46
908 942 1.078143 CTGCAGTGCCTACCTTCCC 60.078 63.158 13.72 0.00 0.00 3.97
909 943 1.538876 TGCAGTGCCTACCTTCCCT 60.539 57.895 13.72 0.00 0.00 4.20
910 944 1.222113 GCAGTGCCTACCTTCCCTC 59.778 63.158 2.85 0.00 0.00 4.30
911 945 1.268283 GCAGTGCCTACCTTCCCTCT 61.268 60.000 2.85 0.00 0.00 3.69
912 946 0.827368 CAGTGCCTACCTTCCCTCTC 59.173 60.000 0.00 0.00 0.00 3.20
913 947 0.713579 AGTGCCTACCTTCCCTCTCT 59.286 55.000 0.00 0.00 0.00 3.10
914 948 1.116308 GTGCCTACCTTCCCTCTCTC 58.884 60.000 0.00 0.00 0.00 3.20
915 949 0.710588 TGCCTACCTTCCCTCTCTCA 59.289 55.000 0.00 0.00 0.00 3.27
916 950 1.116308 GCCTACCTTCCCTCTCTCAC 58.884 60.000 0.00 0.00 0.00 3.51
917 951 1.619977 GCCTACCTTCCCTCTCTCACA 60.620 57.143 0.00 0.00 0.00 3.58
920 954 1.872773 ACCTTCCCTCTCTCACATCC 58.127 55.000 0.00 0.00 0.00 3.51
929 963 4.280819 CCTCTCTCACATCCTCTTCTTCT 58.719 47.826 0.00 0.00 0.00 2.85
944 978 9.230477 TCCTCTTCTTCTTCCTCCATTATTAAT 57.770 33.333 0.00 0.00 0.00 1.40
953 987 4.289672 TCCTCCATTATTAATGCCCTCCTC 59.710 45.833 10.38 0.00 37.57 3.71
954 988 4.043310 CCTCCATTATTAATGCCCTCCTCA 59.957 45.833 10.38 0.00 37.57 3.86
955 989 5.281401 CCTCCATTATTAATGCCCTCCTCAT 60.281 44.000 10.38 0.00 37.57 2.90
960 994 0.772124 TAATGCCCTCCTCATCCCCC 60.772 60.000 0.00 0.00 0.00 5.40
1056 1352 1.067985 GCTTGCTTGCTTCCTTCCTTC 60.068 52.381 0.00 0.00 0.00 3.46
1057 1353 1.543358 CTTGCTTGCTTCCTTCCTTCC 59.457 52.381 0.00 0.00 0.00 3.46
1058 1354 0.773644 TGCTTGCTTCCTTCCTTCCT 59.226 50.000 0.00 0.00 0.00 3.36
1059 1355 1.271597 TGCTTGCTTCCTTCCTTCCTC 60.272 52.381 0.00 0.00 0.00 3.71
1060 1356 1.731720 CTTGCTTCCTTCCTTCCTCG 58.268 55.000 0.00 0.00 0.00 4.63
1061 1357 0.321653 TTGCTTCCTTCCTTCCTCGC 60.322 55.000 0.00 0.00 0.00 5.03
1062 1358 1.194781 TGCTTCCTTCCTTCCTCGCT 61.195 55.000 0.00 0.00 0.00 4.93
1063 1359 0.461163 GCTTCCTTCCTTCCTCGCTC 60.461 60.000 0.00 0.00 0.00 5.03
1064 1360 0.898320 CTTCCTTCCTTCCTCGCTCA 59.102 55.000 0.00 0.00 0.00 4.26
1065 1361 1.484240 CTTCCTTCCTTCCTCGCTCAT 59.516 52.381 0.00 0.00 0.00 2.90
1066 1362 1.573108 TCCTTCCTTCCTCGCTCATT 58.427 50.000 0.00 0.00 0.00 2.57
1067 1363 1.482593 TCCTTCCTTCCTCGCTCATTC 59.517 52.381 0.00 0.00 0.00 2.67
1068 1364 1.474143 CCTTCCTTCCTCGCTCATTCC 60.474 57.143 0.00 0.00 0.00 3.01
1073 1369 1.415659 CTTCCTCGCTCATTCCCTCAT 59.584 52.381 0.00 0.00 0.00 2.90
1081 1377 3.931468 CGCTCATTCCCTCATGATCATAC 59.069 47.826 8.15 0.00 32.59 2.39
1083 1379 4.019501 GCTCATTCCCTCATGATCATACCT 60.020 45.833 8.15 0.00 32.59 3.08
1091 1387 6.045577 TCCCTCATGATCATACCTCTACTACA 59.954 42.308 8.15 0.00 0.00 2.74
1197 1497 7.613551 ACGTCTTATATTTAGGAATGGAGGT 57.386 36.000 0.00 0.00 0.00 3.85
1211 1512 2.089980 TGGAGGTAGTACGTCTCTTGC 58.910 52.381 19.46 6.21 33.80 4.01
1221 1522 1.072159 GTCTCTTGCAGCCACTGGT 59.928 57.895 0.00 0.00 31.21 4.00
1233 1534 4.682050 GCAGCCACTGGTTTTTCCTTTTAA 60.682 41.667 0.00 0.00 37.07 1.52
1249 1550 5.011635 TCCTTTTAATTTGGGTTTCTCTGCC 59.988 40.000 0.00 0.00 0.00 4.85
1251 1552 6.464322 CCTTTTAATTTGGGTTTCTCTGCCTT 60.464 38.462 0.00 0.00 0.00 4.35
1254 1555 0.827507 TTGGGTTTCTCTGCCTTGGC 60.828 55.000 4.43 4.43 0.00 4.52
1255 1556 2.335712 GGGTTTCTCTGCCTTGGCG 61.336 63.158 7.18 2.49 0.00 5.69
1257 1558 1.600916 GTTTCTCTGCCTTGGCGGT 60.601 57.895 18.73 0.00 34.25 5.68
1258 1559 0.321298 GTTTCTCTGCCTTGGCGGTA 60.321 55.000 18.73 7.18 34.25 4.02
1259 1560 0.321298 TTTCTCTGCCTTGGCGGTAC 60.321 55.000 18.73 0.00 34.25 3.34
1260 1561 2.125106 CTCTGCCTTGGCGGTACC 60.125 66.667 18.73 0.16 39.84 3.34
1261 1562 4.077184 TCTGCCTTGGCGGTACCG 62.077 66.667 30.06 30.06 43.94 4.02
1275 1577 0.643820 GTACCGGCTTGATCGTTTCG 59.356 55.000 0.00 0.00 0.00 3.46
1279 1581 2.641663 GCTTGATCGTTTCGCGCG 60.642 61.111 26.76 26.76 41.07 6.86
1292 1594 4.451652 GCGCGCTTTCACTGCTCC 62.452 66.667 26.67 0.00 0.00 4.70
1305 1607 0.681175 CTGCTCCCCTTTTGTTTGGG 59.319 55.000 0.00 0.00 42.98 4.12
1337 1643 2.978010 CTGCCTCGGCCGTTTTGT 60.978 61.111 27.15 0.00 41.09 2.83
1360 1666 2.796651 GAGCATTGCAGGGCGAAG 59.203 61.111 11.91 0.00 34.54 3.79
1378 1684 2.571216 GGCCATGCAGGGATCATGC 61.571 63.158 24.18 13.65 44.11 4.06
1389 1695 1.135094 GGATCATGCCCCTCTTCTCA 58.865 55.000 0.00 0.00 0.00 3.27
1393 1699 1.280133 TCATGCCCCTCTTCTCACTTG 59.720 52.381 0.00 0.00 0.00 3.16
1396 1702 2.069776 CCCCTCTTCTCACTTGGCA 58.930 57.895 0.00 0.00 0.00 4.92
1404 1710 4.526970 TCTTCTCACTTGGCAGTTTTCTT 58.473 39.130 0.00 0.00 0.00 2.52
1405 1711 4.949856 TCTTCTCACTTGGCAGTTTTCTTT 59.050 37.500 0.00 0.00 0.00 2.52
1406 1712 6.119536 TCTTCTCACTTGGCAGTTTTCTTTA 58.880 36.000 0.00 0.00 0.00 1.85
1407 1713 5.751243 TCTCACTTGGCAGTTTTCTTTAC 57.249 39.130 0.00 0.00 0.00 2.01
1408 1714 5.437060 TCTCACTTGGCAGTTTTCTTTACT 58.563 37.500 0.00 0.00 0.00 2.24
1409 1715 5.296780 TCTCACTTGGCAGTTTTCTTTACTG 59.703 40.000 0.00 0.00 44.55 2.74
1410 1716 4.947388 TCACTTGGCAGTTTTCTTTACTGT 59.053 37.500 0.00 0.00 43.81 3.55
1411 1717 5.417580 TCACTTGGCAGTTTTCTTTACTGTT 59.582 36.000 0.00 0.00 43.81 3.16
1412 1718 6.071616 TCACTTGGCAGTTTTCTTTACTGTTT 60.072 34.615 0.00 0.00 43.81 2.83
1413 1719 6.589907 CACTTGGCAGTTTTCTTTACTGTTTT 59.410 34.615 0.00 0.00 43.81 2.43
1414 1720 6.589907 ACTTGGCAGTTTTCTTTACTGTTTTG 59.410 34.615 0.00 0.00 43.81 2.44
1415 1721 6.031751 TGGCAGTTTTCTTTACTGTTTTGT 57.968 33.333 0.00 0.00 43.81 2.83
1416 1722 6.459923 TGGCAGTTTTCTTTACTGTTTTGTT 58.540 32.000 0.00 0.00 43.81 2.83
1417 1723 6.931840 TGGCAGTTTTCTTTACTGTTTTGTTT 59.068 30.769 0.00 0.00 43.81 2.83
1418 1724 7.095439 TGGCAGTTTTCTTTACTGTTTTGTTTG 60.095 33.333 0.00 0.00 43.81 2.93
1419 1725 6.736405 GCAGTTTTCTTTACTGTTTTGTTTGC 59.264 34.615 0.00 0.00 43.81 3.68
1420 1726 7.233689 CAGTTTTCTTTACTGTTTTGTTTGCC 58.766 34.615 0.00 0.00 38.51 4.52
1421 1727 6.370442 AGTTTTCTTTACTGTTTTGTTTGCCC 59.630 34.615 0.00 0.00 0.00 5.36
1422 1728 5.407407 TTCTTTACTGTTTTGTTTGCCCA 57.593 34.783 0.00 0.00 0.00 5.36
1423 1729 5.606348 TCTTTACTGTTTTGTTTGCCCAT 57.394 34.783 0.00 0.00 0.00 4.00
1424 1730 6.716934 TCTTTACTGTTTTGTTTGCCCATA 57.283 33.333 0.00 0.00 0.00 2.74
1425 1731 7.113658 TCTTTACTGTTTTGTTTGCCCATAA 57.886 32.000 0.00 0.00 0.00 1.90
1426 1732 7.731054 TCTTTACTGTTTTGTTTGCCCATAAT 58.269 30.769 0.00 0.00 0.00 1.28
1427 1733 7.655328 TCTTTACTGTTTTGTTTGCCCATAATG 59.345 33.333 0.00 0.00 0.00 1.90
1428 1734 5.289083 ACTGTTTTGTTTGCCCATAATGT 57.711 34.783 0.00 0.00 0.00 2.71
1429 1735 5.055812 ACTGTTTTGTTTGCCCATAATGTG 58.944 37.500 0.00 0.00 0.00 3.21
1442 1748 5.285798 CCATAATGTGGCAAAAAGCTTTG 57.714 39.130 13.54 2.71 42.12 2.77
1460 1766 1.850377 TGTTGCTTTGTGATTTGCGG 58.150 45.000 0.00 0.00 0.00 5.69
1464 1770 1.001487 TGCTTTGTGATTTGCGGTCTG 60.001 47.619 0.00 0.00 0.00 3.51
1473 1779 5.163764 TGTGATTTGCGGTCTGATTAATCAC 60.164 40.000 14.23 17.99 45.91 3.06
1486 1792 7.474640 GTCTGATTAATCACGAGAAAACGTTTC 59.525 37.037 15.01 8.08 44.76 2.78
1500 1806 2.362375 TTTCCATCAAGGCCCGGC 60.362 61.111 0.00 0.00 37.29 6.13
1501 1807 2.917897 TTTCCATCAAGGCCCGGCT 61.918 57.895 9.86 0.00 37.29 5.52
1502 1808 2.837031 TTTCCATCAAGGCCCGGCTC 62.837 60.000 9.86 0.00 37.29 4.70
1519 1825 1.923864 GCTCGCTCTCTTCAGTTTAGC 59.076 52.381 0.00 0.00 0.00 3.09
1561 1871 5.603813 TCATCCATCAGTTCATCACCATCTA 59.396 40.000 0.00 0.00 0.00 1.98
1562 1872 6.271624 TCATCCATCAGTTCATCACCATCTAT 59.728 38.462 0.00 0.00 0.00 1.98
1563 1873 6.106648 TCCATCAGTTCATCACCATCTATC 57.893 41.667 0.00 0.00 0.00 2.08
1564 1874 5.842874 TCCATCAGTTCATCACCATCTATCT 59.157 40.000 0.00 0.00 0.00 1.98
1684 1995 5.593502 AGGTATATACGCTGGCTTACTATCC 59.406 44.000 6.79 0.00 0.00 2.59
1704 2036 2.734606 CCGTCGATGCACTCACTTTTTA 59.265 45.455 0.00 0.00 0.00 1.52
1711 2043 8.480853 GTCGATGCACTCACTTTTTATATACTC 58.519 37.037 0.00 0.00 0.00 2.59
1813 2434 1.937546 CTGGTCTTTTGGCCCGCATC 61.938 60.000 0.00 0.00 45.51 3.91
1827 2785 1.081242 GCATCCAAAGGTGCACGTG 60.081 57.895 13.63 12.28 40.94 4.49
1837 2795 1.071699 AGGTGCACGTGACCATTTACT 59.928 47.619 27.63 11.81 35.76 2.24
1868 2826 7.068839 ACCAAGAATATACGGCTAGATATGAGG 59.931 40.741 0.00 0.00 0.00 3.86
1873 2831 1.198713 CGGCTAGATATGAGGCCCAT 58.801 55.000 0.00 5.44 41.35 4.00
1876 2834 1.280133 GCTAGATATGAGGCCCATGCA 59.720 52.381 14.84 0.00 40.13 3.96
1917 2875 3.375610 TGCTTTGTGATACGTGTGTGTTT 59.624 39.130 0.00 0.00 0.00 2.83
2082 3067 5.336451 CCGTGGGATCTCGAATCATGTATAA 60.336 44.000 8.98 0.00 32.30 0.98
2121 3106 4.963318 ACATACGTGAAGGATGGATCAT 57.037 40.909 0.00 0.00 45.63 2.45
2122 3107 5.296151 ACATACGTGAAGGATGGATCATT 57.704 39.130 0.00 0.00 45.63 2.57
2146 3131 7.479897 TTTTTCGTTAGTGTACAGTTGCATA 57.520 32.000 8.85 0.00 0.00 3.14
2280 3267 2.573462 ACTCCTTTCCAGCTTGAGCATA 59.427 45.455 5.70 0.00 45.16 3.14
2306 3293 1.145945 TCCAACTGTGGCACCCAAATA 59.854 47.619 16.26 0.00 45.54 1.40
2426 3420 1.899437 TTCCTGGATCACGAGGGCAC 61.899 60.000 0.00 0.00 41.40 5.01
2431 3425 0.815615 GGATCACGAGGGCACATTCC 60.816 60.000 0.00 0.00 0.00 3.01
2432 3426 0.179000 GATCACGAGGGCACATTCCT 59.821 55.000 0.00 0.00 37.33 3.36
2433 3427 0.620556 ATCACGAGGGCACATTCCTT 59.379 50.000 0.00 0.00 34.21 3.36
2434 3428 0.321564 TCACGAGGGCACATTCCTTG 60.322 55.000 0.00 0.00 40.73 3.61
2435 3429 1.002134 ACGAGGGCACATTCCTTGG 60.002 57.895 0.00 0.00 39.55 3.61
2436 3430 1.750399 CGAGGGCACATTCCTTGGG 60.750 63.158 0.00 0.00 34.21 4.12
2445 3439 3.181440 GCACATTCCTTGGGGAGATGATA 60.181 47.826 11.28 0.00 43.29 2.15
2448 3442 2.422939 TCCTTGGGGAGATGATAGGG 57.577 55.000 0.00 0.00 36.57 3.53
2459 3453 1.816863 ATGATAGGGCCTACGCACGG 61.817 60.000 17.19 0.00 46.01 4.94
2472 3469 3.027170 GCACGGCATTGTCGACCAG 62.027 63.158 18.82 3.79 33.65 4.00
2474 3471 1.374252 ACGGCATTGTCGACCAGTC 60.374 57.895 18.82 3.23 33.65 3.51
2476 3473 1.354337 CGGCATTGTCGACCAGTCTG 61.354 60.000 14.12 4.48 29.41 3.51
2482 3479 0.464036 TGTCGACCAGTCTGCAACTT 59.536 50.000 14.12 0.00 35.45 2.66
2501 3498 0.988145 TGGGATTGGTGGCCTAGGAG 60.988 60.000 14.75 0.00 0.00 3.69
2533 3530 2.560504 TCACTGTTAGCAACCAGTGTG 58.439 47.619 21.46 13.02 39.43 3.82
2534 3531 2.093181 TCACTGTTAGCAACCAGTGTGT 60.093 45.455 21.46 0.00 39.43 3.72
2557 3554 3.503363 TGCTTTGTCTCATAGTTTGGCTG 59.497 43.478 0.00 0.00 0.00 4.85
2562 3559 1.565759 TCTCATAGTTTGGCTGGCCAT 59.434 47.619 15.41 3.33 46.64 4.40
2592 3589 9.859427 TTCTTCTAAGTTCCATAAATTGCATTG 57.141 29.630 0.00 0.00 0.00 2.82
2635 3635 6.884096 TTAAAACAAGTTCAATGTGTGCTG 57.116 33.333 0.00 0.00 0.00 4.41
2636 3636 2.497107 ACAAGTTCAATGTGTGCTGC 57.503 45.000 0.00 0.00 0.00 5.25
2637 3637 1.067516 ACAAGTTCAATGTGTGCTGCC 59.932 47.619 0.00 0.00 0.00 4.85
2638 3638 1.067364 CAAGTTCAATGTGTGCTGCCA 59.933 47.619 0.00 0.00 0.00 4.92
2639 3639 0.956633 AGTTCAATGTGTGCTGCCAG 59.043 50.000 0.00 0.00 0.00 4.85
2640 3640 0.038892 GTTCAATGTGTGCTGCCAGG 60.039 55.000 0.00 0.00 0.00 4.45
2641 3641 0.178995 TTCAATGTGTGCTGCCAGGA 60.179 50.000 0.00 0.00 0.00 3.86
2642 3642 0.890542 TCAATGTGTGCTGCCAGGAC 60.891 55.000 9.69 9.69 37.06 3.85
2643 3643 1.151221 AATGTGTGCTGCCAGGACA 59.849 52.632 15.58 15.58 44.42 4.02
2741 3745 7.525688 ACGCGGATTTATGAATATCACATAG 57.474 36.000 12.47 0.00 32.88 2.23
2743 3747 7.275779 ACGCGGATTTATGAATATCACATAGTC 59.724 37.037 12.47 0.00 32.88 2.59
2828 3835 8.220755 TGGTTCTTAATATGTTCAATGTAGGC 57.779 34.615 0.00 0.00 0.00 3.93
2870 3877 2.286127 GACTAGCCTCGCAGGACCAC 62.286 65.000 6.40 0.00 37.67 4.16
2981 3988 0.107410 TTACCATTGGCACGCTAGGG 60.107 55.000 5.05 5.05 0.00 3.53
3032 4039 1.689273 GAGGGCCACGAAGACTATGAT 59.311 52.381 6.18 0.00 0.00 2.45
3035 4042 2.420129 GGGCCACGAAGACTATGATGTT 60.420 50.000 4.39 0.00 0.00 2.71
3044 4051 6.699204 ACGAAGACTATGATGTTGATGATGAC 59.301 38.462 0.00 0.00 0.00 3.06
3423 4430 4.057428 GTGCCTCGCTCGGTGAGT 62.057 66.667 11.75 0.00 38.37 3.41
3494 4501 2.060980 GGAGAGCGAGGATGGTGGT 61.061 63.158 0.00 0.00 0.00 4.16
3530 4537 0.903236 AAGTAGGGAAAGGCGGAGAC 59.097 55.000 0.00 0.00 0.00 3.36
3531 4538 0.252103 AGTAGGGAAAGGCGGAGACA 60.252 55.000 0.00 0.00 39.87 3.41
3629 4636 0.239347 CGGCCAAGAGCAAGTTTCAG 59.761 55.000 2.24 0.00 46.50 3.02
3637 4644 3.654414 AGAGCAAGTTTCAGAAGGTACG 58.346 45.455 0.00 0.00 0.00 3.67
3821 5156 9.378551 TCTGTATGACTGGTCAATATGTTTTAC 57.621 33.333 7.53 4.26 43.58 2.01
3829 5164 8.311109 ACTGGTCAATATGTTTTACCCATTTTC 58.689 33.333 0.00 0.00 0.00 2.29
3831 5166 6.254804 GGTCAATATGTTTTACCCATTTTCGC 59.745 38.462 0.00 0.00 0.00 4.70
3872 5207 9.996554 TTGAAATATTTCTGTGTCTCAACTAGA 57.003 29.630 24.77 0.65 38.02 2.43
3903 5239 8.673711 TGGAAATACAATTCGGTTTAATGAGAG 58.326 33.333 0.00 0.00 0.00 3.20
3981 5318 7.346208 TGAGTTGAGTAACACAATTATCACG 57.654 36.000 0.00 0.00 39.30 4.35
4004 5341 8.520351 CACGTCACAATAATATCATCCCTACTA 58.480 37.037 0.00 0.00 0.00 1.82
4172 5592 6.773976 TGTCAATCCATAAAAATCAGGGAC 57.226 37.500 0.00 0.00 0.00 4.46
4221 5642 9.277783 AGACCTAATTATTTGATGGATCTTTCG 57.722 33.333 0.00 0.00 0.00 3.46
4232 5653 9.627123 TTTGATGGATCTTTCGGTAGAATTATT 57.373 29.630 0.00 0.00 36.09 1.40
4288 5709 3.745975 CCTCTGAGCACGTTACAATTTCA 59.254 43.478 0.00 0.00 0.00 2.69
4376 5797 5.942961 TGGAAATTGGTCCAACAGTACTTA 58.057 37.500 6.41 0.00 44.91 2.24
4379 5800 6.263617 GGAAATTGGTCCAACAGTACTTAACA 59.736 38.462 6.41 0.00 37.65 2.41
4380 5801 7.201839 GGAAATTGGTCCAACAGTACTTAACAA 60.202 37.037 6.41 0.00 37.65 2.83
4381 5802 7.833285 AATTGGTCCAACAGTACTTAACAAT 57.167 32.000 6.41 0.00 0.00 2.71
4382 5803 7.833285 ATTGGTCCAACAGTACTTAACAATT 57.167 32.000 6.41 0.00 0.00 2.32
4383 5804 6.870971 TGGTCCAACAGTACTTAACAATTC 57.129 37.500 0.00 0.00 0.00 2.17
4384 5805 6.358178 TGGTCCAACAGTACTTAACAATTCA 58.642 36.000 0.00 0.00 0.00 2.57
4385 5806 6.261381 TGGTCCAACAGTACTTAACAATTCAC 59.739 38.462 0.00 0.00 0.00 3.18
4386 5807 6.485648 GGTCCAACAGTACTTAACAATTCACT 59.514 38.462 0.00 0.00 0.00 3.41
4387 5808 7.012989 GGTCCAACAGTACTTAACAATTCACTT 59.987 37.037 0.00 0.00 0.00 3.16
4388 5809 9.048446 GTCCAACAGTACTTAACAATTCACTTA 57.952 33.333 0.00 0.00 0.00 2.24
4389 5810 9.787435 TCCAACAGTACTTAACAATTCACTTAT 57.213 29.630 0.00 0.00 0.00 1.73
4492 5913 3.822735 AGCAAAAGATCAAAGCAGCACTA 59.177 39.130 0.00 0.00 0.00 2.74
4525 6103 1.878775 GCTGCCAAGTGCCAACTAG 59.121 57.895 0.00 0.00 40.16 2.57
4606 6184 5.425217 TGGAAACTCCTGTCTAATGCTATCA 59.575 40.000 0.00 0.00 37.46 2.15
4995 6573 2.571216 CCTCCCCTGTTGACGACGT 61.571 63.158 0.00 0.00 0.00 4.34
4996 6574 1.246056 CCTCCCCTGTTGACGACGTA 61.246 60.000 0.00 0.00 0.00 3.57
5074 6652 9.884465 GACTGTGAGTGCAATTAATTAATATCC 57.116 33.333 11.07 3.97 0.00 2.59
5305 7121 3.963129 TCCCATCACTAAAATGGACACC 58.037 45.455 3.72 0.00 45.51 4.16
5456 7275 6.711277 TGGTACTGGAATTATAGATGGATGC 58.289 40.000 0.00 0.00 0.00 3.91
5458 7277 7.168219 GGTACTGGAATTATAGATGGATGCAA 58.832 38.462 0.00 0.00 0.00 4.08
5476 7306 3.243501 TGCAAGGAAGAATCAACAACTGC 60.244 43.478 0.00 0.00 0.00 4.40
5501 7331 3.242543 GCCTGAATGTGATGATGAACGAC 60.243 47.826 0.00 0.00 0.00 4.34
5506 7336 3.893326 TGTGATGATGAACGACTGGAT 57.107 42.857 0.00 0.00 0.00 3.41
5950 7787 2.416547 CCAAACGATAGGAGCACACTTG 59.583 50.000 0.00 0.00 43.77 3.16
5951 7788 3.325870 CAAACGATAGGAGCACACTTGA 58.674 45.455 0.00 0.00 43.77 3.02
5954 7791 3.786635 ACGATAGGAGCACACTTGATTC 58.213 45.455 0.00 0.00 43.77 2.52
5966 7803 1.265905 ACTTGATTCGCCGTGTTTTCC 59.734 47.619 0.00 0.00 0.00 3.13
5991 7832 0.169230 ATCTCGTGAGACGTGTGCTC 59.831 55.000 0.86 0.00 43.14 4.26
6084 7981 5.703130 GTGATCAATTATTAGTGGGGAGAGC 59.297 44.000 0.00 0.00 0.00 4.09
6086 7983 5.708736 TCAATTATTAGTGGGGAGAGCAA 57.291 39.130 0.00 0.00 0.00 3.91
6099 8003 4.447290 GGGAGAGCAAAGAGGATTAGAAC 58.553 47.826 0.00 0.00 0.00 3.01
6120 8024 2.490903 CCCAAGTCAAAATCAGCCTCAG 59.509 50.000 0.00 0.00 0.00 3.35
6135 8156 2.162408 GCCTCAGTTCCCTCAATTTTCG 59.838 50.000 0.00 0.00 0.00 3.46
6137 8158 3.437049 CCTCAGTTCCCTCAATTTTCGTC 59.563 47.826 0.00 0.00 0.00 4.20
6138 8159 4.065088 CTCAGTTCCCTCAATTTTCGTCA 58.935 43.478 0.00 0.00 0.00 4.35
6226 8247 3.525800 ACCTTTTATCCAACCTGCACT 57.474 42.857 0.00 0.00 0.00 4.40
6229 8250 3.057315 CCTTTTATCCAACCTGCACTGTG 60.057 47.826 2.76 2.76 0.00 3.66
6265 8286 4.259970 GCTCTGTCTATGCACGTATGTTTG 60.260 45.833 0.00 0.00 0.00 2.93
6325 8346 1.353103 GGCAGTGTGCGATACATGC 59.647 57.895 13.70 13.70 46.21 4.06
6327 8348 0.027194 GCAGTGTGCGATACATGCAG 59.973 55.000 15.54 0.00 44.21 4.41
6336 8357 3.126858 TGCGATACATGCAGAAAAGGAAC 59.873 43.478 0.00 0.00 37.44 3.62
6368 8389 4.316446 CGACTAGCATAACATTGAACGACG 60.316 45.833 0.00 0.00 0.00 5.12
6377 8398 2.873472 ACATTGAACGACGTAAGCCAAA 59.127 40.909 0.00 0.00 45.62 3.28
6384 8405 2.410730 ACGACGTAAGCCAAAATCGAAG 59.589 45.455 0.00 0.00 45.62 3.79
6426 8447 4.148174 GCAACGACAATTTTAACAAGGCTC 59.852 41.667 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.162690 CTACCCTGCTCCCGTGCC 62.163 72.222 0.00 0.00 0.00 5.01
44 45 1.457831 GGATCTACCCTGCTCCCGT 60.458 63.158 0.00 0.00 0.00 5.28
45 46 2.565645 CGGATCTACCCTGCTCCCG 61.566 68.421 0.00 0.00 34.64 5.14
55 56 1.069935 GGGGCAGCTTCGGATCTAC 59.930 63.158 0.00 0.00 0.00 2.59
87 88 3.319198 GGAGCGGTCCAAGGTGGA 61.319 66.667 28.27 0.00 45.98 4.02
129 130 0.963225 TCCGAACTCAACATCCACGA 59.037 50.000 0.00 0.00 0.00 4.35
131 132 1.079503 GCTCCGAACTCAACATCCAC 58.920 55.000 0.00 0.00 0.00 4.02
133 134 1.084370 CGGCTCCGAACTCAACATCC 61.084 60.000 1.35 0.00 42.83 3.51
153 154 4.116878 GGCAAGGATGTCGAGCTC 57.883 61.111 2.73 2.73 0.00 4.09
159 160 2.124695 GACCCCGGCAAGGATGTC 60.125 66.667 0.00 2.43 45.00 3.06
160 161 4.096003 CGACCCCGGCAAGGATGT 62.096 66.667 0.00 0.00 45.00 3.06
171 184 0.880718 GAATCGAATCTGCCGACCCC 60.881 60.000 0.00 0.00 38.97 4.95
173 186 1.651987 TTGAATCGAATCTGCCGACC 58.348 50.000 1.55 0.00 38.97 4.79
186 199 2.170607 TGTCCCCTCTCCGATTTGAATC 59.829 50.000 0.00 0.00 0.00 2.52
197 210 1.002087 TCTTTCGCTTTGTCCCCTCTC 59.998 52.381 0.00 0.00 0.00 3.20
208 221 4.054671 CAGTTCACTCTTCTCTTTCGCTT 58.945 43.478 0.00 0.00 0.00 4.68
255 269 1.913419 GACCCTACTCCATTCCCACAA 59.087 52.381 0.00 0.00 0.00 3.33
263 277 1.414158 CATCACCGACCCTACTCCAT 58.586 55.000 0.00 0.00 0.00 3.41
264 278 0.686441 CCATCACCGACCCTACTCCA 60.686 60.000 0.00 0.00 0.00 3.86
273 287 2.124570 AGCATGGCCATCACCGAC 60.125 61.111 17.61 1.13 0.00 4.79
284 298 1.078214 ATCCACCACGTCAGCATGG 60.078 57.895 0.00 0.00 42.13 3.66
286 300 1.078214 CCATCCACCACGTCAGCAT 60.078 57.895 0.00 0.00 0.00 3.79
287 301 2.213513 TCCATCCACCACGTCAGCA 61.214 57.895 0.00 0.00 0.00 4.41
289 303 1.079127 GGTCCATCCACCACGTCAG 60.079 63.158 0.00 0.00 36.32 3.51
291 305 2.267961 GGGTCCATCCACCACGTC 59.732 66.667 0.00 0.00 38.32 4.34
292 306 3.702048 CGGGTCCATCCACCACGT 61.702 66.667 0.00 0.00 38.32 4.49
293 307 4.467084 CCGGGTCCATCCACCACG 62.467 72.222 0.00 0.00 38.32 4.94
294 308 4.796495 GCCGGGTCCATCCACCAC 62.796 72.222 2.18 0.00 38.32 4.16
309 323 4.660938 GGTGGATATGGGCCGGCC 62.661 72.222 38.57 38.57 0.00 6.13
310 324 4.660938 GGGTGGATATGGGCCGGC 62.661 72.222 21.18 21.18 0.00 6.13
313 327 0.779997 ATGAAGGGTGGATATGGGCC 59.220 55.000 0.00 0.00 0.00 5.80
315 329 3.233507 CCAAATGAAGGGTGGATATGGG 58.766 50.000 0.00 0.00 34.05 4.00
316 330 3.233507 CCCAAATGAAGGGTGGATATGG 58.766 50.000 0.00 0.00 41.61 2.74
329 344 2.424667 CCACCATATCCAGCCCAAATGA 60.425 50.000 0.00 0.00 0.00 2.57
336 351 1.598130 GCGTCCACCATATCCAGCC 60.598 63.158 0.00 0.00 0.00 4.85
337 352 1.598130 GGCGTCCACCATATCCAGC 60.598 63.158 0.00 0.00 0.00 4.85
357 372 1.068541 GCCTCAAACATTCGGGTTGTC 60.069 52.381 0.00 0.00 0.00 3.18
359 374 0.243636 GGCCTCAAACATTCGGGTTG 59.756 55.000 0.00 0.00 0.00 3.77
361 376 0.178975 TTGGCCTCAAACATTCGGGT 60.179 50.000 3.32 0.00 0.00 5.28
363 378 3.317603 AAATTGGCCTCAAACATTCGG 57.682 42.857 3.32 0.00 36.36 4.30
364 379 5.572896 GTCTTAAATTGGCCTCAAACATTCG 59.427 40.000 3.32 0.00 36.36 3.34
366 381 6.183360 TGTGTCTTAAATTGGCCTCAAACATT 60.183 34.615 3.32 0.00 36.36 2.71
376 391 4.083003 TCCAATCGTGTGTCTTAAATTGGC 60.083 41.667 6.98 0.00 41.75 4.52
442 460 9.607988 TGTTTTTCTTAGAACATCTACAGTCAA 57.392 29.630 0.00 0.00 31.30 3.18
443 461 9.261180 CTGTTTTTCTTAGAACATCTACAGTCA 57.739 33.333 0.00 0.00 35.44 3.41
445 463 9.832445 TTCTGTTTTTCTTAGAACATCTACAGT 57.168 29.630 9.72 0.00 35.44 3.55
454 472 7.910683 CAGGTGAAGTTCTGTTTTTCTTAGAAC 59.089 37.037 4.17 7.97 46.57 3.01
457 475 6.542370 TCCAGGTGAAGTTCTGTTTTTCTTAG 59.458 38.462 4.17 0.00 0.00 2.18
458 476 6.419791 TCCAGGTGAAGTTCTGTTTTTCTTA 58.580 36.000 4.17 0.00 0.00 2.10
465 483 5.535030 GGTTAAATCCAGGTGAAGTTCTGTT 59.465 40.000 4.17 0.00 0.00 3.16
467 485 5.070001 TGGTTAAATCCAGGTGAAGTTCTG 58.930 41.667 4.17 0.00 33.19 3.02
474 492 5.014123 AGACAGAATGGTTAAATCCAGGTGA 59.986 40.000 0.00 0.00 43.62 4.02
483 501 4.024387 GTGCGAACAGACAGAATGGTTAAA 60.024 41.667 0.00 0.00 43.62 1.52
527 545 6.088541 TCCATCCAGGTAAAGTAGAGTACT 57.911 41.667 0.00 0.00 38.65 2.73
531 549 4.901849 TCCATCCATCCAGGTAAAGTAGAG 59.098 45.833 0.00 0.00 39.02 2.43
532 550 4.890988 TCCATCCATCCAGGTAAAGTAGA 58.109 43.478 0.00 0.00 39.02 2.59
533 551 5.513788 CCATCCATCCATCCAGGTAAAGTAG 60.514 48.000 0.00 0.00 39.02 2.57
599 627 2.125713 CGGCAGATGGTACGTGCA 60.126 61.111 5.86 0.00 39.05 4.57
645 679 1.444383 GCGCGTGTCAGACTCATCA 60.444 57.895 8.43 0.00 0.00 3.07
682 716 2.027192 ACATGTACTTTGTCCGGCATCT 60.027 45.455 0.00 0.00 0.00 2.90
683 717 2.095853 CACATGTACTTTGTCCGGCATC 59.904 50.000 0.00 0.00 0.00 3.91
684 718 2.083774 CACATGTACTTTGTCCGGCAT 58.916 47.619 0.00 0.00 0.00 4.40
685 719 1.070914 TCACATGTACTTTGTCCGGCA 59.929 47.619 0.00 0.00 0.00 5.69
686 720 1.803334 TCACATGTACTTTGTCCGGC 58.197 50.000 0.00 0.00 0.00 6.13
687 721 3.125146 CACATCACATGTACTTTGTCCGG 59.875 47.826 0.00 0.00 42.70 5.14
807 841 1.388547 GCTACAAATGGAATGGCCGA 58.611 50.000 0.00 0.00 40.66 5.54
862 896 1.075896 AGGAGAGGGTGATCCGGTC 60.076 63.158 0.00 0.00 40.73 4.79
907 941 4.280819 AGAAGAAGAGGATGTGAGAGAGG 58.719 47.826 0.00 0.00 0.00 3.69
908 942 5.163519 GGAAGAAGAAGAGGATGTGAGAGAG 60.164 48.000 0.00 0.00 0.00 3.20
909 943 4.709397 GGAAGAAGAAGAGGATGTGAGAGA 59.291 45.833 0.00 0.00 0.00 3.10
910 944 4.711355 AGGAAGAAGAAGAGGATGTGAGAG 59.289 45.833 0.00 0.00 0.00 3.20
911 945 4.682563 AGGAAGAAGAAGAGGATGTGAGA 58.317 43.478 0.00 0.00 0.00 3.27
912 946 4.141959 GGAGGAAGAAGAAGAGGATGTGAG 60.142 50.000 0.00 0.00 0.00 3.51
913 947 3.772025 GGAGGAAGAAGAAGAGGATGTGA 59.228 47.826 0.00 0.00 0.00 3.58
914 948 3.517100 TGGAGGAAGAAGAAGAGGATGTG 59.483 47.826 0.00 0.00 0.00 3.21
915 949 3.796111 TGGAGGAAGAAGAAGAGGATGT 58.204 45.455 0.00 0.00 0.00 3.06
916 950 5.370875 AATGGAGGAAGAAGAAGAGGATG 57.629 43.478 0.00 0.00 0.00 3.51
917 951 7.704359 AATAATGGAGGAAGAAGAAGAGGAT 57.296 36.000 0.00 0.00 0.00 3.24
920 954 8.782144 GCATTAATAATGGAGGAAGAAGAAGAG 58.218 37.037 14.11 0.00 39.31 2.85
929 963 4.669768 AGGAGGGCATTAATAATGGAGGAA 59.330 41.667 14.11 0.00 39.31 3.36
960 994 2.166829 CTGATCTATCGGAGAGGGTGG 58.833 57.143 0.00 0.00 43.63 4.61
962 996 1.427368 AGCTGATCTATCGGAGAGGGT 59.573 52.381 2.89 0.00 43.63 4.34
963 997 2.214376 AGCTGATCTATCGGAGAGGG 57.786 55.000 2.89 0.00 43.63 4.30
1056 1352 0.755079 TCATGAGGGAATGAGCGAGG 59.245 55.000 0.00 0.00 32.75 4.63
1057 1353 2.036862 TGATCATGAGGGAATGAGCGAG 59.963 50.000 0.09 0.00 44.17 5.03
1058 1354 2.041701 TGATCATGAGGGAATGAGCGA 58.958 47.619 0.09 0.00 44.17 4.93
1059 1355 2.538512 TGATCATGAGGGAATGAGCG 57.461 50.000 0.09 0.00 44.17 5.03
1060 1356 4.019501 AGGTATGATCATGAGGGAATGAGC 60.020 45.833 18.72 4.56 42.12 4.26
1061 1357 5.484644 AGAGGTATGATCATGAGGGAATGAG 59.515 44.000 18.72 0.00 39.84 2.90
1062 1358 5.409712 AGAGGTATGATCATGAGGGAATGA 58.590 41.667 18.72 0.00 40.73 2.57
1063 1359 5.758790 AGAGGTATGATCATGAGGGAATG 57.241 43.478 18.72 0.00 0.00 2.67
1064 1360 6.569737 AGTAGAGGTATGATCATGAGGGAAT 58.430 40.000 18.72 1.29 0.00 3.01
1065 1361 5.970289 AGTAGAGGTATGATCATGAGGGAA 58.030 41.667 18.72 0.00 0.00 3.97
1066 1362 5.607168 AGTAGAGGTATGATCATGAGGGA 57.393 43.478 18.72 0.00 0.00 4.20
1067 1363 6.151985 GTGTAGTAGAGGTATGATCATGAGGG 59.848 46.154 18.72 0.00 0.00 4.30
1068 1364 6.717084 TGTGTAGTAGAGGTATGATCATGAGG 59.283 42.308 18.72 0.00 0.00 3.86
1073 1369 7.785028 AGGAAATGTGTAGTAGAGGTATGATCA 59.215 37.037 0.00 0.00 0.00 2.92
1158 1457 3.915437 AGACGTTTGGGCAGTTTAATG 57.085 42.857 0.00 0.00 0.00 1.90
1162 1461 6.584185 AAATATAAGACGTTTGGGCAGTTT 57.416 33.333 0.00 0.00 0.00 2.66
1197 1497 1.201647 GTGGCTGCAAGAGACGTACTA 59.798 52.381 0.50 0.00 34.07 1.82
1211 1512 3.541996 AAAAGGAAAAACCAGTGGCTG 57.458 42.857 9.78 0.00 42.04 4.85
1221 1522 9.389755 CAGAGAAACCCAAATTAAAAGGAAAAA 57.610 29.630 0.00 0.00 0.00 1.94
1233 1534 2.250924 CCAAGGCAGAGAAACCCAAAT 58.749 47.619 0.00 0.00 0.00 2.32
1249 1550 2.869503 ATCAAGCCGGTACCGCCAAG 62.870 60.000 29.15 16.01 38.24 3.61
1251 1552 3.379865 GATCAAGCCGGTACCGCCA 62.380 63.158 29.15 9.86 38.24 5.69
1254 1555 0.738412 AAACGATCAAGCCGGTACCG 60.738 55.000 27.68 27.68 39.44 4.02
1255 1556 1.004595 GAAACGATCAAGCCGGTACC 58.995 55.000 1.90 0.16 0.00 3.34
1257 1558 1.079875 GCGAAACGATCAAGCCGGTA 61.080 55.000 1.90 0.00 0.00 4.02
1258 1559 2.388232 GCGAAACGATCAAGCCGGT 61.388 57.895 1.90 0.00 0.00 5.28
1259 1560 2.399611 GCGAAACGATCAAGCCGG 59.600 61.111 0.00 0.00 0.00 6.13
1275 1577 4.451652 GGAGCAGTGAAAGCGCGC 62.452 66.667 26.66 26.66 37.01 6.86
1279 1581 1.000171 CAAAAGGGGAGCAGTGAAAGC 60.000 52.381 0.00 0.00 0.00 3.51
1305 1607 0.244721 GGCAGCCAACATGAAGGAAC 59.755 55.000 6.55 0.00 0.00 3.62
1330 1636 3.181521 TGCAATGCTCGAGATACAAAACG 60.182 43.478 18.75 0.00 0.00 3.60
1337 1643 0.250038 GCCCTGCAATGCTCGAGATA 60.250 55.000 18.75 4.19 0.00 1.98
1360 1666 2.571216 GCATGATCCCTGCATGGCC 61.571 63.158 2.62 0.00 42.53 5.36
1370 1676 1.135094 TGAGAAGAGGGGCATGATCC 58.865 55.000 0.00 0.00 0.00 3.36
1378 1684 0.035630 CTGCCAAGTGAGAAGAGGGG 60.036 60.000 0.00 0.00 0.00 4.79
1389 1695 5.914898 AACAGTAAAGAAAACTGCCAAGT 57.085 34.783 3.24 0.00 46.73 3.16
1393 1699 6.961359 AACAAAACAGTAAAGAAAACTGCC 57.039 33.333 3.24 0.00 46.73 4.85
1396 1702 6.370442 GGGCAAACAAAACAGTAAAGAAAACT 59.630 34.615 0.00 0.00 0.00 2.66
1404 1710 6.703607 CACATTATGGGCAAACAAAACAGTAA 59.296 34.615 0.00 0.00 0.00 2.24
1405 1711 6.219473 CACATTATGGGCAAACAAAACAGTA 58.781 36.000 0.00 0.00 0.00 2.74
1406 1712 5.055812 CACATTATGGGCAAACAAAACAGT 58.944 37.500 0.00 0.00 0.00 3.55
1407 1713 4.451774 CCACATTATGGGCAAACAAAACAG 59.548 41.667 0.00 0.00 45.95 3.16
1408 1714 4.384056 CCACATTATGGGCAAACAAAACA 58.616 39.130 0.00 0.00 45.95 2.83
1421 1727 5.927954 ACAAAGCTTTTTGCCACATTATG 57.072 34.783 9.53 0.00 44.23 1.90
1422 1728 5.277925 GCAACAAAGCTTTTTGCCACATTAT 60.278 36.000 29.20 1.37 44.23 1.28
1423 1729 4.034975 GCAACAAAGCTTTTTGCCACATTA 59.965 37.500 29.20 0.00 44.23 1.90
1424 1730 3.181498 GCAACAAAGCTTTTTGCCACATT 60.181 39.130 29.20 6.51 44.23 2.71
1425 1731 2.355444 GCAACAAAGCTTTTTGCCACAT 59.645 40.909 29.20 4.21 44.23 3.21
1426 1732 1.736681 GCAACAAAGCTTTTTGCCACA 59.263 42.857 29.20 0.00 44.23 4.17
1427 1733 2.009051 AGCAACAAAGCTTTTTGCCAC 58.991 42.857 32.20 18.82 45.58 5.01
1428 1734 2.399916 AGCAACAAAGCTTTTTGCCA 57.600 40.000 32.20 0.00 45.58 4.92
1437 1743 3.610495 GCAAATCACAAAGCAACAAAGC 58.390 40.909 0.00 0.00 0.00 3.51
1438 1744 3.302610 CCGCAAATCACAAAGCAACAAAG 60.303 43.478 0.00 0.00 0.00 2.77
1442 1748 1.786579 GACCGCAAATCACAAAGCAAC 59.213 47.619 0.00 0.00 0.00 4.17
1449 1755 4.940654 TGATTAATCAGACCGCAAATCACA 59.059 37.500 14.23 0.00 30.59 3.58
1460 1766 6.390987 ACGTTTTCTCGTGATTAATCAGAC 57.609 37.500 18.47 7.15 42.56 3.51
1464 1770 6.595794 TGGAAACGTTTTCTCGTGATTAATC 58.404 36.000 19.76 8.60 43.38 1.75
1473 1779 3.810373 CCTTGATGGAAACGTTTTCTCG 58.190 45.455 19.76 6.99 38.35 4.04
1500 1806 3.502191 AGCTAAACTGAAGAGAGCGAG 57.498 47.619 0.00 0.00 38.20 5.03
1501 1807 5.584253 ATTAGCTAAACTGAAGAGAGCGA 57.416 39.130 10.85 0.00 38.20 4.93
1502 1808 6.266323 TGTATTAGCTAAACTGAAGAGAGCG 58.734 40.000 10.85 0.00 38.20 5.03
1503 1809 8.480643 TTTGTATTAGCTAAACTGAAGAGAGC 57.519 34.615 10.85 0.00 0.00 4.09
1519 1825 7.099266 TGGATGAAACTGCCATTTGTATTAG 57.901 36.000 0.00 0.00 0.00 1.73
1561 1871 3.809832 CCAAGAACACGAGAACACAAGAT 59.190 43.478 0.00 0.00 0.00 2.40
1562 1872 3.194861 CCAAGAACACGAGAACACAAGA 58.805 45.455 0.00 0.00 0.00 3.02
1563 1873 2.936498 ACCAAGAACACGAGAACACAAG 59.064 45.455 0.00 0.00 0.00 3.16
1564 1874 2.675844 CACCAAGAACACGAGAACACAA 59.324 45.455 0.00 0.00 0.00 3.33
1684 1995 2.949714 AAAAAGTGAGTGCATCGACG 57.050 45.000 0.00 0.00 0.00 5.12
1704 2036 8.028354 CGAGAGAAGCATGAAAGATGAGTATAT 58.972 37.037 0.00 0.00 0.00 0.86
1711 2043 5.347342 AGTACGAGAGAAGCATGAAAGATG 58.653 41.667 0.00 0.00 0.00 2.90
1813 2434 1.172180 ATGGTCACGTGCACCTTTGG 61.172 55.000 26.61 0.00 34.66 3.28
1827 2785 4.460948 TCTTGGTCCGTAGTAAATGGTC 57.539 45.455 0.00 0.00 35.53 4.02
1837 2795 3.225104 AGCCGTATATTCTTGGTCCGTA 58.775 45.455 0.00 0.00 0.00 4.02
1868 2826 1.538047 AATATCACCGATGCATGGGC 58.462 50.000 26.01 0.34 41.68 5.36
1895 2853 2.556257 ACACACACGTATCACAAAGCA 58.444 42.857 0.00 0.00 0.00 3.91
1896 2854 3.602390 AACACACACGTATCACAAAGC 57.398 42.857 0.00 0.00 0.00 3.51
1897 2855 4.732923 CCAAAACACACACGTATCACAAAG 59.267 41.667 0.00 0.00 0.00 2.77
1899 2857 3.939592 TCCAAAACACACACGTATCACAA 59.060 39.130 0.00 0.00 0.00 3.33
1900 2858 3.532542 TCCAAAACACACACGTATCACA 58.467 40.909 0.00 0.00 0.00 3.58
1901 2859 4.539509 TTCCAAAACACACACGTATCAC 57.460 40.909 0.00 0.00 0.00 3.06
1902 2860 4.496673 GCTTTCCAAAACACACACGTATCA 60.497 41.667 0.00 0.00 0.00 2.15
1903 2861 3.972502 GCTTTCCAAAACACACACGTATC 59.027 43.478 0.00 0.00 0.00 2.24
1917 2875 2.446435 GACTATTGCCCAGCTTTCCAA 58.554 47.619 0.00 0.00 0.00 3.53
1940 2911 0.733909 GGCCACTACGACGTTACCAC 60.734 60.000 5.50 0.00 0.00 4.16
2062 3047 7.335422 AGCAAATTATACATGATTCGAGATCCC 59.665 37.037 0.00 0.00 0.00 3.85
2082 3067 6.154445 CGTATGTACCGTTATCCTAGCAAAT 58.846 40.000 0.00 0.00 0.00 2.32
2096 3081 2.359848 TCCATCCTTCACGTATGTACCG 59.640 50.000 0.00 0.00 0.00 4.02
2122 3107 5.798015 TGCAACTGTACACTAACGAAAAA 57.202 34.783 0.00 0.00 0.00 1.94
2146 3131 9.667107 CATAATATATACTGTTCAAATCCCGGT 57.333 33.333 0.00 0.00 0.00 5.28
2426 3420 3.009916 CCCTATCATCTCCCCAAGGAATG 59.990 52.174 0.00 0.00 43.40 2.67
2431 3425 0.695347 GGCCCTATCATCTCCCCAAG 59.305 60.000 0.00 0.00 0.00 3.61
2432 3426 0.271927 AGGCCCTATCATCTCCCCAA 59.728 55.000 0.00 0.00 0.00 4.12
2433 3427 1.176182 TAGGCCCTATCATCTCCCCA 58.824 55.000 0.00 0.00 0.00 4.96
2434 3428 1.574263 GTAGGCCCTATCATCTCCCC 58.426 60.000 0.00 0.00 0.00 4.81
2435 3429 1.187087 CGTAGGCCCTATCATCTCCC 58.813 60.000 0.00 0.00 0.00 4.30
2436 3430 0.533032 GCGTAGGCCCTATCATCTCC 59.467 60.000 0.00 0.00 0.00 3.71
2459 3453 0.950555 TGCAGACTGGTCGACAATGC 60.951 55.000 18.91 17.96 35.08 3.56
2461 3455 1.070758 AGTTGCAGACTGGTCGACAAT 59.929 47.619 18.91 0.93 37.17 2.71
2472 3469 1.270550 CACCAATCCCAAGTTGCAGAC 59.729 52.381 0.00 0.00 0.00 3.51
2474 3471 0.604578 CCACCAATCCCAAGTTGCAG 59.395 55.000 0.00 0.00 0.00 4.41
2476 3473 1.293179 GCCACCAATCCCAAGTTGC 59.707 57.895 0.00 0.00 0.00 4.17
2482 3479 0.988145 CTCCTAGGCCACCAATCCCA 60.988 60.000 5.01 0.00 0.00 4.37
2533 3530 4.022849 AGCCAAACTATGAGACAAAGCAAC 60.023 41.667 0.00 0.00 0.00 4.17
2534 3531 4.022935 CAGCCAAACTATGAGACAAAGCAA 60.023 41.667 0.00 0.00 0.00 3.91
2539 3536 2.436417 GCCAGCCAAACTATGAGACAA 58.564 47.619 0.00 0.00 0.00 3.18
2607 3607 9.553418 GCACACATTGAACTTGTTTTAATTTTT 57.447 25.926 0.00 0.00 0.00 1.94
2613 3613 4.803088 GCAGCACACATTGAACTTGTTTTA 59.197 37.500 0.00 0.00 0.00 1.52
2617 3617 1.067516 GGCAGCACACATTGAACTTGT 59.932 47.619 0.00 0.00 0.00 3.16
2625 3625 0.892358 CTGTCCTGGCAGCACACATT 60.892 55.000 7.28 0.00 0.00 2.71
2626 3626 1.303074 CTGTCCTGGCAGCACACAT 60.303 57.895 7.28 0.00 0.00 3.21
2629 3629 0.395586 AAAACTGTCCTGGCAGCACA 60.396 50.000 11.42 11.42 39.96 4.57
2631 3631 0.823356 GGAAAACTGTCCTGGCAGCA 60.823 55.000 9.56 1.38 39.96 4.41
2632 3632 1.527433 GGGAAAACTGTCCTGGCAGC 61.527 60.000 9.56 0.00 39.96 5.25
2635 3635 1.177401 GATGGGAAAACTGTCCTGGC 58.823 55.000 0.00 0.00 37.85 4.85
2636 3636 2.887151 AGATGGGAAAACTGTCCTGG 57.113 50.000 0.00 0.00 37.85 4.45
2637 3637 4.010349 GGTTAGATGGGAAAACTGTCCTG 58.990 47.826 0.00 0.00 37.85 3.86
2638 3638 3.655777 TGGTTAGATGGGAAAACTGTCCT 59.344 43.478 0.00 0.00 37.85 3.85
2639 3639 4.028993 TGGTTAGATGGGAAAACTGTCC 57.971 45.455 0.00 0.00 36.90 4.02
2640 3640 4.332819 CGATGGTTAGATGGGAAAACTGTC 59.667 45.833 0.00 0.00 0.00 3.51
2641 3641 4.019681 TCGATGGTTAGATGGGAAAACTGT 60.020 41.667 0.00 0.00 0.00 3.55
2642 3642 4.513442 TCGATGGTTAGATGGGAAAACTG 58.487 43.478 0.00 0.00 0.00 3.16
2643 3643 4.837093 TCGATGGTTAGATGGGAAAACT 57.163 40.909 0.00 0.00 0.00 2.66
2644 3644 4.941873 ACTTCGATGGTTAGATGGGAAAAC 59.058 41.667 3.12 0.00 0.00 2.43
2645 3645 5.174037 ACTTCGATGGTTAGATGGGAAAA 57.826 39.130 3.12 0.00 0.00 2.29
2713 3717 6.073819 TGTGATATTCATAAATCCGCGTTCAG 60.074 38.462 4.92 0.00 0.00 3.02
2741 3745 5.067805 GGGATAGACCAATCCAATTGTTGAC 59.932 44.000 9.69 4.81 46.29 3.18
2743 3747 4.342092 GGGGATAGACCAATCCAATTGTTG 59.658 45.833 4.43 3.35 46.29 3.33
2870 3877 4.411993 AGCATCATCATCGTAGTACTCG 57.588 45.455 0.00 3.38 0.00 4.18
2981 3988 0.028902 GGACATTAATGGCGGCGAAC 59.971 55.000 19.37 2.36 36.40 3.95
2991 3998 2.102588 CGTCTTCTCCGGGGACATTAAT 59.897 50.000 1.51 0.00 0.00 1.40
3032 4039 1.349234 CGCAGTCGTCATCATCAACA 58.651 50.000 0.00 0.00 0.00 3.33
3099 4106 3.713288 CACCATCATCAACATTGCCATC 58.287 45.455 0.00 0.00 0.00 3.51
3203 4210 0.250124 TGGTGGCGACGTCATCTTTT 60.250 50.000 14.66 0.00 0.00 2.27
3494 4501 1.152271 ACTTTCCCTTCCTCCCTCTCA 59.848 52.381 0.00 0.00 0.00 3.27
3530 4537 0.878523 TCGTCCTTTTGTGACCGCTG 60.879 55.000 0.00 0.00 0.00 5.18
3531 4538 0.179067 TTCGTCCTTTTGTGACCGCT 60.179 50.000 0.00 0.00 0.00 5.52
3637 4644 2.495084 AGGAAACGAGGAACAAGAAGC 58.505 47.619 0.00 0.00 0.00 3.86
3821 5156 5.102313 GGACTGAAAAATAGCGAAAATGGG 58.898 41.667 0.00 0.00 0.00 4.00
3829 5164 9.520204 AATATTTCAATGGACTGAAAAATAGCG 57.480 29.630 3.13 0.00 45.75 4.26
3890 5226 4.749245 AGTTGCAACTCTCATTAAACCG 57.251 40.909 26.36 0.00 32.86 4.44
4004 5341 8.936070 TTAGTGCAACGTATAGTGATACAATT 57.064 30.769 0.00 0.00 45.86 2.32
4006 5343 7.541162 ACTTAGTGCAACGTATAGTGATACAA 58.459 34.615 0.00 0.00 45.86 2.41
4008 5345 7.982371 AACTTAGTGCAACGTATAGTGATAC 57.018 36.000 0.00 0.00 45.86 2.24
4010 5347 7.601130 TGAAAACTTAGTGCAACGTATAGTGAT 59.399 33.333 0.00 0.00 45.86 3.06
4011 5348 6.924612 TGAAAACTTAGTGCAACGTATAGTGA 59.075 34.615 0.00 0.00 45.86 3.41
4256 5677 2.606725 CGTGCTCAGAGGTGATTGATTC 59.393 50.000 0.00 0.00 30.18 2.52
4306 5727 4.201714 GCAAACTGCCAAAGAAAAACAGAC 60.202 41.667 0.00 0.00 37.42 3.51
4317 5738 2.393646 ACCCTAAAGCAAACTGCCAAA 58.606 42.857 0.00 0.00 46.52 3.28
4318 5739 2.080654 ACCCTAAAGCAAACTGCCAA 57.919 45.000 0.00 0.00 46.52 4.52
4492 5913 0.098728 GCAGCCGTACGCATTGATTT 59.901 50.000 10.49 0.00 41.38 2.17
4525 6103 6.394025 TTTACCAACAAGTTGACAATACCC 57.606 37.500 10.54 0.00 42.93 3.69
4606 6184 6.183360 CCATCAAGAAAGTTGGGATGCATAAT 60.183 38.462 0.00 0.00 35.25 1.28
4731 6309 6.467677 TCTTCCTTTGAATGAACTCTACCTG 58.532 40.000 0.00 0.00 0.00 4.00
4735 6313 5.639506 CGCTTCTTCCTTTGAATGAACTCTA 59.360 40.000 0.00 0.00 0.00 2.43
4995 6573 1.605058 GCCGTTGAGCTCCTCACCTA 61.605 60.000 12.15 0.00 40.46 3.08
4996 6574 2.948720 GCCGTTGAGCTCCTCACCT 61.949 63.158 12.15 0.00 40.46 4.00
5073 6651 5.707764 CCACTAGAAAGAGAAAGAAAAGGGG 59.292 44.000 0.00 0.00 0.00 4.79
5074 6652 6.534634 TCCACTAGAAAGAGAAAGAAAAGGG 58.465 40.000 0.00 0.00 0.00 3.95
5305 7121 3.317711 AGGAACATATCTCTCGCTGTCAG 59.682 47.826 0.00 0.00 0.00 3.51
5452 7271 5.159209 CAGTTGTTGATTCTTCCTTGCATC 58.841 41.667 0.00 0.00 0.00 3.91
5456 7275 4.543692 CAGCAGTTGTTGATTCTTCCTTG 58.456 43.478 0.00 0.00 0.00 3.61
5458 7277 3.152341 CCAGCAGTTGTTGATTCTTCCT 58.848 45.455 0.00 0.00 0.00 3.36
5476 7306 2.927028 TCATCATCACATTCAGGCCAG 58.073 47.619 5.01 0.00 0.00 4.85
5950 7787 0.725117 ATCGGAAAACACGGCGAATC 59.275 50.000 16.62 3.72 0.00 2.52
5951 7788 1.135803 CAATCGGAAAACACGGCGAAT 60.136 47.619 16.62 0.00 0.00 3.34
5954 7791 0.446222 ATCAATCGGAAAACACGGCG 59.554 50.000 4.80 4.80 0.00 6.46
5966 7803 2.104901 CACGTCTCACGAGATCAATCG 58.895 52.381 2.48 3.04 46.05 3.34
6046 7942 3.507162 TGATCACAAAGAGGCCTTCAA 57.493 42.857 6.77 0.00 0.00 2.69
6084 7981 5.560724 TGACTTGGGTTCTAATCCTCTTTG 58.439 41.667 0.00 0.00 0.00 2.77
6086 7983 5.843019 TTGACTTGGGTTCTAATCCTCTT 57.157 39.130 0.00 0.00 0.00 2.85
6099 8003 2.490903 CTGAGGCTGATTTTGACTTGGG 59.509 50.000 0.00 0.00 0.00 4.12
6120 8024 5.629079 AATCTGACGAAAATTGAGGGAAC 57.371 39.130 0.00 0.00 0.00 3.62
6135 8156 4.748102 TCAAACTGTTACACCGAATCTGAC 59.252 41.667 0.00 0.00 0.00 3.51
6137 8158 4.509970 TGTCAAACTGTTACACCGAATCTG 59.490 41.667 0.00 0.00 0.00 2.90
6138 8159 4.699637 TGTCAAACTGTTACACCGAATCT 58.300 39.130 0.00 0.00 0.00 2.40
6187 8208 7.534723 AAAGGTATTTTTAGACCAAACCTCC 57.465 36.000 0.00 0.00 38.27 4.30
6229 8250 2.158842 AGACAGAGCATTAGTGATGGCC 60.159 50.000 0.00 0.00 36.21 5.36
6298 8319 3.192541 TCGCACACTGCCACATATATT 57.807 42.857 0.00 0.00 41.12 1.28
6325 8346 2.223947 CGGTTTTGGGGTTCCTTTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
6327 8348 2.033372 TCGGTTTTGGGGTTCCTTTTC 58.967 47.619 0.00 0.00 0.00 2.29
6336 8357 2.681344 GTTATGCTAGTCGGTTTTGGGG 59.319 50.000 0.00 0.00 0.00 4.96
6368 8389 7.931275 AGATTATTCCTTCGATTTTGGCTTAC 58.069 34.615 0.00 0.00 0.00 2.34
6377 8398 6.865726 CGATCTGTGAGATTATTCCTTCGATT 59.134 38.462 0.00 0.00 34.53 3.34
6384 8405 3.995199 TGCCGATCTGTGAGATTATTCC 58.005 45.455 0.00 0.00 34.53 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.