Multiple sequence alignment - TraesCS6D01G396200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G396200 chr6D 100.000 2574 0 0 1 2574 468688831 468691404 0.000000e+00 4754.0
1 TraesCS6D01G396200 chr6D 86.111 684 63 15 746 1412 468176078 468176746 0.000000e+00 708.0
2 TraesCS6D01G396200 chr6D 91.892 37 3 0 1798 1834 468113534 468113570 5.000000e-03 52.8
3 TraesCS6D01G396200 chr6B 95.111 1350 55 9 803 2144 714466628 714467974 0.000000e+00 2117.0
4 TraesCS6D01G396200 chr6B 91.951 820 48 11 1 815 714465001 714465807 0.000000e+00 1133.0
5 TraesCS6D01G396200 chr6B 87.209 688 59 15 746 1419 714402416 714403088 0.000000e+00 756.0
6 TraesCS6D01G396200 chrUn 94.123 1089 46 9 902 1988 75264506 75263434 0.000000e+00 1640.0
7 TraesCS6D01G396200 chrUn 87.120 691 60 15 746 1422 211927922 211927247 0.000000e+00 756.0
8 TraesCS6D01G396200 chrUn 87.007 685 62 12 746 1419 210221153 210221821 0.000000e+00 747.0
9 TraesCS6D01G396200 chrUn 95.294 170 8 0 1975 2144 75262581 75262412 1.170000e-68 270.0
10 TraesCS6D01G396200 chrUn 94.286 35 2 0 1807 1841 75279762 75279728 1.000000e-03 54.7
11 TraesCS6D01G396200 chr1D 90.357 280 26 1 1 279 426551777 426552056 1.460000e-97 366.0
12 TraesCS6D01G396200 chr1D 90.357 280 26 1 1 279 426552908 426553187 1.460000e-97 366.0
13 TraesCS6D01G396200 chr1D 88.136 236 26 1 46 279 426576614 426576849 1.950000e-71 279.0
14 TraesCS6D01G396200 chr1D 95.745 47 2 0 1 47 426554040 426554086 2.750000e-10 76.8
15 TraesCS6D01G396200 chr2A 89.606 279 28 1 1 278 11664491 11664769 1.130000e-93 353.0
16 TraesCS6D01G396200 chr3D 89.362 282 25 5 1 279 151068271 151067992 1.470000e-92 350.0
17 TraesCS6D01G396200 chr5A 89.062 256 27 1 1 255 548686733 548686478 1.490000e-82 316.0
18 TraesCS6D01G396200 chr2D 87.455 279 23 3 1 279 419605146 419604880 6.920000e-81 311.0
19 TraesCS6D01G396200 chr6A 92.105 38 3 0 1798 1835 614170742 614170779 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G396200 chr6D 468688831 468691404 2573 False 4754.0 4754 100.0000 1 2574 1 chr6D.!!$F3 2573
1 TraesCS6D01G396200 chr6D 468176078 468176746 668 False 708.0 708 86.1110 746 1412 1 chr6D.!!$F2 666
2 TraesCS6D01G396200 chr6B 714465001 714467974 2973 False 1625.0 2117 93.5310 1 2144 2 chr6B.!!$F2 2143
3 TraesCS6D01G396200 chr6B 714402416 714403088 672 False 756.0 756 87.2090 746 1419 1 chr6B.!!$F1 673
4 TraesCS6D01G396200 chrUn 75262412 75264506 2094 True 955.0 1640 94.7085 902 2144 2 chrUn.!!$R3 1242
5 TraesCS6D01G396200 chrUn 211927247 211927922 675 True 756.0 756 87.1200 746 1422 1 chrUn.!!$R2 676
6 TraesCS6D01G396200 chrUn 210221153 210221821 668 False 747.0 747 87.0070 746 1419 1 chrUn.!!$F1 673
7 TraesCS6D01G396200 chr1D 426551777 426554086 2309 False 269.6 366 92.1530 1 279 3 chr1D.!!$F2 278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 1364 0.038251 CCTAGACAGCAGTGCAACGA 60.038 55.0 19.2 3.57 45.86 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2203 5509 0.029433 GATCTTCCCAAAATCGCGCC 59.971 55.0 0.0 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 1179 8.902540 AACAATATGAAGATAAAGCATCGGTA 57.097 30.769 0.00 0.00 38.81 4.02
51 1183 5.784578 TGAAGATAAAGCATCGGTAGCTA 57.215 39.130 0.00 0.00 42.53 3.32
61 1193 6.163135 AGCATCGGTAGCTAAATAGTCTTT 57.837 37.500 0.00 0.00 41.32 2.52
140 1272 8.287503 CCTAATTTATTATCGCCAAACAGGTAC 58.712 37.037 0.00 0.00 40.61 3.34
145 1277 2.951458 GCCAAACAGGTACGCACC 59.049 61.111 0.00 0.00 46.19 5.01
155 1287 4.367023 TACGCACCGTGCCACTCC 62.367 66.667 17.81 0.00 41.12 3.85
232 1364 0.038251 CCTAGACAGCAGTGCAACGA 60.038 55.000 19.20 3.57 45.86 3.85
248 1381 4.095334 TGCAACGATGAGATTTCAATGAGG 59.905 41.667 0.00 0.00 36.78 3.86
249 1382 4.497006 GCAACGATGAGATTTCAATGAGGG 60.497 45.833 0.00 0.00 36.78 4.30
256 1389 6.566079 TGAGATTTCAATGAGGGTAGTCAT 57.434 37.500 0.00 0.00 38.91 3.06
258 1391 6.385176 TGAGATTTCAATGAGGGTAGTCATCT 59.615 38.462 0.00 0.00 36.07 2.90
279 1412 2.104530 GCTCCTAGTTCGCGTCCC 59.895 66.667 5.77 0.00 0.00 4.46
284 1417 0.107848 CCTAGTTCGCGTCCCCATTT 60.108 55.000 5.77 0.00 0.00 2.32
285 1418 1.677820 CCTAGTTCGCGTCCCCATTTT 60.678 52.381 5.77 0.00 0.00 1.82
383 1518 3.577667 TGCCTCAAAGATTTCGCAAATG 58.422 40.909 0.00 0.00 0.00 2.32
408 1543 9.043079 TGACGTAAACATCTGTTTTACATTGTA 57.957 29.630 13.06 0.00 45.07 2.41
553 1688 5.801947 GCATTAACACCTCTTAAATGCACAG 59.198 40.000 12.14 0.00 33.25 3.66
657 1792 3.892200 AAAAATGCAAGGCTCACCG 57.108 47.368 0.00 0.00 42.76 4.94
665 1800 0.250727 CAAGGCTCACCGAAAAGGGA 60.251 55.000 0.00 0.00 46.96 4.20
748 1883 0.182061 CCAGCCAGCCTCACATACAT 59.818 55.000 0.00 0.00 0.00 2.29
1062 3040 1.020437 GAGCAGAACAATAGCCAGCC 58.980 55.000 0.00 0.00 0.00 4.85
1332 3761 3.774066 TGTGACTGATCTTGCAGATACG 58.226 45.455 0.00 0.00 34.53 3.06
1386 3823 3.002965 AGACGGAAACAAAATGTTCGGTC 59.997 43.478 13.22 13.22 40.14 4.79
1554 3991 4.083643 GGGTGAATGTCAATCATCTATGCG 60.084 45.833 1.25 0.00 35.48 4.73
1642 4079 9.283768 ACTATTTGAGTGATATGTTGTTTGTGA 57.716 29.630 0.00 0.00 36.87 3.58
1741 4179 6.072286 GGTGTAAAGAGATCCCATGCATATTG 60.072 42.308 0.00 0.00 0.00 1.90
1750 4188 2.223876 CCCATGCATATTGTCAGGCAAC 60.224 50.000 0.00 0.00 40.28 4.17
1756 4194 1.816074 TATTGTCAGGCAACCCGTTC 58.184 50.000 0.00 0.00 40.28 3.95
1922 4360 5.046304 CCATAGATCGTCTTCCACCCATTAT 60.046 44.000 0.00 0.00 0.00 1.28
1953 4391 8.080083 GCATCAACAAAGATGACAAGAAAAAT 57.920 30.769 8.03 0.00 46.51 1.82
2118 5424 0.836606 TCTTCAGTGTTGAGGTGCCA 59.163 50.000 0.00 0.00 34.15 4.92
2144 5450 5.945191 TCATTGCAAATGAACATGAGGACTA 59.055 36.000 1.71 0.00 0.00 2.59
2145 5451 6.604396 TCATTGCAAATGAACATGAGGACTAT 59.396 34.615 1.71 0.00 0.00 2.12
2146 5452 5.823209 TGCAAATGAACATGAGGACTATG 57.177 39.130 0.00 0.00 0.00 2.23
2147 5453 4.641541 TGCAAATGAACATGAGGACTATGG 59.358 41.667 0.00 0.00 0.00 2.74
2148 5454 4.883585 GCAAATGAACATGAGGACTATGGA 59.116 41.667 0.00 0.00 0.00 3.41
2149 5455 5.008415 GCAAATGAACATGAGGACTATGGAG 59.992 44.000 0.00 0.00 0.00 3.86
2150 5456 4.970860 ATGAACATGAGGACTATGGAGG 57.029 45.455 0.00 0.00 0.00 4.30
2151 5457 2.435805 TGAACATGAGGACTATGGAGGC 59.564 50.000 0.00 0.00 0.00 4.70
2158 5464 3.806941 GACTATGGAGGCCATGCAA 57.193 52.632 5.01 0.00 44.84 4.08
2159 5465 2.283145 GACTATGGAGGCCATGCAAT 57.717 50.000 5.01 0.00 44.84 3.56
2160 5466 2.590821 GACTATGGAGGCCATGCAATT 58.409 47.619 5.01 0.00 44.84 2.32
2161 5467 3.754965 GACTATGGAGGCCATGCAATTA 58.245 45.455 5.01 0.00 44.84 1.40
2162 5468 4.338879 GACTATGGAGGCCATGCAATTAT 58.661 43.478 5.01 0.00 44.84 1.28
2163 5469 4.744237 ACTATGGAGGCCATGCAATTATT 58.256 39.130 5.01 0.00 44.84 1.40
2164 5470 4.768968 ACTATGGAGGCCATGCAATTATTC 59.231 41.667 5.01 0.00 44.84 1.75
2165 5471 3.029483 TGGAGGCCATGCAATTATTCA 57.971 42.857 5.01 0.00 0.00 2.57
2166 5472 2.960384 TGGAGGCCATGCAATTATTCAG 59.040 45.455 5.01 0.00 0.00 3.02
2167 5473 3.225104 GGAGGCCATGCAATTATTCAGA 58.775 45.455 5.01 0.00 0.00 3.27
2168 5474 3.255149 GGAGGCCATGCAATTATTCAGAG 59.745 47.826 5.01 0.00 0.00 3.35
2169 5475 2.626743 AGGCCATGCAATTATTCAGAGC 59.373 45.455 5.01 0.00 0.00 4.09
2170 5476 2.606308 GGCCATGCAATTATTCAGAGCG 60.606 50.000 0.00 0.00 0.00 5.03
2171 5477 2.606308 GCCATGCAATTATTCAGAGCGG 60.606 50.000 0.00 0.00 0.00 5.52
2172 5478 2.606308 CCATGCAATTATTCAGAGCGGC 60.606 50.000 0.00 0.00 0.00 6.53
2173 5479 1.748950 TGCAATTATTCAGAGCGGCA 58.251 45.000 1.45 0.00 0.00 5.69
2174 5480 2.090760 TGCAATTATTCAGAGCGGCAA 58.909 42.857 1.45 0.00 0.00 4.52
2175 5481 2.159393 TGCAATTATTCAGAGCGGCAAC 60.159 45.455 1.45 0.00 0.00 4.17
2189 5495 1.696988 GGCAACGCATGTAAAGTTGG 58.303 50.000 19.17 8.09 43.72 3.77
2190 5496 1.668628 GGCAACGCATGTAAAGTTGGG 60.669 52.381 19.17 0.00 43.72 4.12
2191 5497 1.000717 GCAACGCATGTAAAGTTGGGT 60.001 47.619 19.17 0.00 43.72 4.51
2192 5498 2.660490 CAACGCATGTAAAGTTGGGTG 58.340 47.619 13.68 0.00 40.89 4.61
2193 5499 2.264005 ACGCATGTAAAGTTGGGTGA 57.736 45.000 0.00 0.00 0.00 4.02
2194 5500 2.790433 ACGCATGTAAAGTTGGGTGAT 58.210 42.857 0.00 0.00 0.00 3.06
2195 5501 2.487762 ACGCATGTAAAGTTGGGTGATG 59.512 45.455 0.00 0.00 0.00 3.07
2196 5502 2.159393 CGCATGTAAAGTTGGGTGATGG 60.159 50.000 0.00 0.00 0.00 3.51
2197 5503 2.166254 GCATGTAAAGTTGGGTGATGGG 59.834 50.000 0.00 0.00 0.00 4.00
2198 5504 3.696045 CATGTAAAGTTGGGTGATGGGA 58.304 45.455 0.00 0.00 0.00 4.37
2199 5505 3.433306 TGTAAAGTTGGGTGATGGGAG 57.567 47.619 0.00 0.00 0.00 4.30
2200 5506 2.041081 TGTAAAGTTGGGTGATGGGAGG 59.959 50.000 0.00 0.00 0.00 4.30
2201 5507 0.251787 AAAGTTGGGTGATGGGAGGC 60.252 55.000 0.00 0.00 0.00 4.70
2202 5508 1.434513 AAGTTGGGTGATGGGAGGCA 61.435 55.000 0.00 0.00 0.00 4.75
2203 5509 1.379044 GTTGGGTGATGGGAGGCAG 60.379 63.158 0.00 0.00 0.00 4.85
2204 5510 2.615465 TTGGGTGATGGGAGGCAGG 61.615 63.158 0.00 0.00 0.00 4.85
2205 5511 4.512914 GGGTGATGGGAGGCAGGC 62.513 72.222 0.00 0.00 0.00 4.85
2206 5512 4.864334 GGTGATGGGAGGCAGGCG 62.864 72.222 0.00 0.00 0.00 5.52
2213 5519 3.134127 GGAGGCAGGCGCGATTTT 61.134 61.111 12.10 0.00 39.92 1.82
2214 5520 2.100991 GAGGCAGGCGCGATTTTG 59.899 61.111 12.10 2.37 39.92 2.44
2215 5521 3.401243 GAGGCAGGCGCGATTTTGG 62.401 63.158 12.10 0.00 39.92 3.28
2216 5522 4.496927 GGCAGGCGCGATTTTGGG 62.497 66.667 12.10 0.00 39.92 4.12
2217 5523 3.439540 GCAGGCGCGATTTTGGGA 61.440 61.111 12.10 0.00 0.00 4.37
2218 5524 2.988688 GCAGGCGCGATTTTGGGAA 61.989 57.895 12.10 0.00 0.00 3.97
2219 5525 1.137404 CAGGCGCGATTTTGGGAAG 59.863 57.895 12.10 0.00 0.00 3.46
2220 5526 1.002624 AGGCGCGATTTTGGGAAGA 60.003 52.632 12.10 0.00 0.00 2.87
2221 5527 0.394352 AGGCGCGATTTTGGGAAGAT 60.394 50.000 12.10 0.00 0.00 2.40
2222 5528 0.029433 GGCGCGATTTTGGGAAGATC 59.971 55.000 12.10 0.00 0.00 2.75
2223 5529 0.316196 GCGCGATTTTGGGAAGATCG 60.316 55.000 12.10 5.20 43.94 3.69
2226 5532 2.744787 CGATTTTGGGAAGATCGCTG 57.255 50.000 0.00 0.00 36.63 5.18
2227 5533 1.331756 CGATTTTGGGAAGATCGCTGG 59.668 52.381 0.00 0.00 36.63 4.85
2228 5534 1.066152 GATTTTGGGAAGATCGCTGGC 59.934 52.381 0.00 0.00 0.00 4.85
2229 5535 0.038166 TTTTGGGAAGATCGCTGGCT 59.962 50.000 0.00 0.00 0.00 4.75
2230 5536 0.038166 TTTGGGAAGATCGCTGGCTT 59.962 50.000 0.00 0.00 0.00 4.35
2231 5537 0.677731 TTGGGAAGATCGCTGGCTTG 60.678 55.000 0.00 0.00 0.00 4.01
2232 5538 1.221840 GGGAAGATCGCTGGCTTGA 59.778 57.895 0.00 0.00 0.00 3.02
2233 5539 0.392998 GGGAAGATCGCTGGCTTGAA 60.393 55.000 0.00 0.00 0.00 2.69
2234 5540 1.012841 GGAAGATCGCTGGCTTGAAG 58.987 55.000 0.00 0.00 0.00 3.02
2235 5541 1.012841 GAAGATCGCTGGCTTGAAGG 58.987 55.000 0.00 0.00 0.00 3.46
2236 5542 0.326264 AAGATCGCTGGCTTGAAGGT 59.674 50.000 0.00 0.00 0.00 3.50
2237 5543 0.326264 AGATCGCTGGCTTGAAGGTT 59.674 50.000 0.00 0.00 0.00 3.50
2238 5544 0.449388 GATCGCTGGCTTGAAGGTTG 59.551 55.000 0.00 0.00 0.00 3.77
2239 5545 0.962356 ATCGCTGGCTTGAAGGTTGG 60.962 55.000 0.00 0.00 0.00 3.77
2240 5546 1.600636 CGCTGGCTTGAAGGTTGGA 60.601 57.895 0.00 0.00 0.00 3.53
2241 5547 1.580845 CGCTGGCTTGAAGGTTGGAG 61.581 60.000 0.00 0.00 0.00 3.86
2242 5548 1.246737 GCTGGCTTGAAGGTTGGAGG 61.247 60.000 0.00 0.00 0.00 4.30
2243 5549 0.610232 CTGGCTTGAAGGTTGGAGGG 60.610 60.000 0.00 0.00 0.00 4.30
2244 5550 1.360393 TGGCTTGAAGGTTGGAGGGT 61.360 55.000 0.00 0.00 0.00 4.34
2245 5551 0.178961 GGCTTGAAGGTTGGAGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
2246 5552 1.248486 GCTTGAAGGTTGGAGGGTTC 58.752 55.000 0.00 0.00 0.00 3.62
2247 5553 1.478654 GCTTGAAGGTTGGAGGGTTCA 60.479 52.381 0.00 0.00 0.00 3.18
2248 5554 2.508526 CTTGAAGGTTGGAGGGTTCAG 58.491 52.381 0.00 0.00 30.86 3.02
2249 5555 0.771127 TGAAGGTTGGAGGGTTCAGG 59.229 55.000 0.00 0.00 0.00 3.86
2250 5556 1.064825 GAAGGTTGGAGGGTTCAGGA 58.935 55.000 0.00 0.00 0.00 3.86
2251 5557 1.003696 GAAGGTTGGAGGGTTCAGGAG 59.996 57.143 0.00 0.00 0.00 3.69
2252 5558 1.002011 GGTTGGAGGGTTCAGGAGC 60.002 63.158 0.00 0.00 0.00 4.70
2253 5559 1.492993 GGTTGGAGGGTTCAGGAGCT 61.493 60.000 0.00 0.00 0.00 4.09
2254 5560 0.402121 GTTGGAGGGTTCAGGAGCTT 59.598 55.000 0.00 0.00 0.00 3.74
2255 5561 0.401738 TTGGAGGGTTCAGGAGCTTG 59.598 55.000 0.00 0.00 0.00 4.01
2256 5562 1.377856 GGAGGGTTCAGGAGCTTGC 60.378 63.158 0.00 0.00 0.00 4.01
2257 5563 1.743252 GAGGGTTCAGGAGCTTGCG 60.743 63.158 0.00 0.00 0.00 4.85
2258 5564 3.435186 GGGTTCAGGAGCTTGCGC 61.435 66.667 0.00 0.00 0.00 6.09
2259 5565 3.435186 GGTTCAGGAGCTTGCGCC 61.435 66.667 4.18 7.30 36.60 6.53
2260 5566 3.793144 GTTCAGGAGCTTGCGCCG 61.793 66.667 4.18 0.00 36.60 6.46
2266 5572 2.586079 GAGCTTGCGCCGCAGATA 60.586 61.111 13.13 0.00 40.61 1.98
2267 5573 1.958205 GAGCTTGCGCCGCAGATAT 60.958 57.895 13.13 0.00 40.61 1.63
2268 5574 0.667487 GAGCTTGCGCCGCAGATATA 60.667 55.000 13.13 0.00 40.61 0.86
2269 5575 0.036952 AGCTTGCGCCGCAGATATAT 60.037 50.000 13.13 0.00 40.61 0.86
2270 5576 0.095935 GCTTGCGCCGCAGATATATG 59.904 55.000 13.13 0.00 40.61 1.78
2271 5577 0.095935 CTTGCGCCGCAGATATATGC 59.904 55.000 13.13 12.38 40.61 3.14
2272 5578 0.602372 TTGCGCCGCAGATATATGCA 60.602 50.000 21.38 0.00 46.87 3.96
2273 5579 0.602372 TGCGCCGCAGATATATGCAA 60.602 50.000 21.38 0.00 46.87 4.08
2274 5580 0.095935 GCGCCGCAGATATATGCAAG 59.904 55.000 21.38 13.04 46.87 4.01
2275 5581 1.713597 CGCCGCAGATATATGCAAGA 58.286 50.000 21.38 0.00 46.87 3.02
2276 5582 1.657594 CGCCGCAGATATATGCAAGAG 59.342 52.381 21.38 10.31 46.87 2.85
2277 5583 2.693069 GCCGCAGATATATGCAAGAGT 58.307 47.619 21.38 0.00 46.87 3.24
2278 5584 2.414481 GCCGCAGATATATGCAAGAGTG 59.586 50.000 21.38 4.61 46.87 3.51
2287 5593 4.379174 GCAAGAGTGCCCTCGAAA 57.621 55.556 0.00 0.00 45.68 3.46
2288 5594 2.166270 GCAAGAGTGCCCTCGAAAG 58.834 57.895 0.00 0.00 45.68 2.62
2289 5595 1.916697 GCAAGAGTGCCCTCGAAAGC 61.917 60.000 0.00 0.00 45.68 3.51
2290 5596 0.321122 CAAGAGTGCCCTCGAAAGCT 60.321 55.000 7.74 0.00 42.86 3.74
2291 5597 0.036858 AAGAGTGCCCTCGAAAGCTC 60.037 55.000 7.74 4.44 42.86 4.09
2292 5598 1.807573 GAGTGCCCTCGAAAGCTCG 60.808 63.158 7.74 0.00 46.87 5.03
2293 5599 2.815647 GTGCCCTCGAAAGCTCGG 60.816 66.667 7.74 0.00 45.49 4.63
2294 5600 4.082523 TGCCCTCGAAAGCTCGGG 62.083 66.667 7.74 4.49 45.70 5.14
2313 5619 4.492160 GGAGCGATCCGTGCGTCA 62.492 66.667 2.80 0.00 37.44 4.35
2314 5620 2.951745 GAGCGATCCGTGCGTCAG 60.952 66.667 0.00 0.00 37.44 3.51
2315 5621 4.498520 AGCGATCCGTGCGTCAGG 62.499 66.667 0.00 0.00 37.44 3.86
2318 5624 4.148825 GATCCGTGCGTCAGGCCT 62.149 66.667 0.00 0.00 42.61 5.19
2319 5625 3.665675 GATCCGTGCGTCAGGCCTT 62.666 63.158 0.00 0.00 42.61 4.35
2320 5626 2.292794 GATCCGTGCGTCAGGCCTTA 62.293 60.000 0.00 0.00 42.61 2.69
2321 5627 2.573609 ATCCGTGCGTCAGGCCTTAC 62.574 60.000 0.00 4.19 42.61 2.34
2322 5628 2.261671 CGTGCGTCAGGCCTTACT 59.738 61.111 15.02 0.00 42.61 2.24
2323 5629 1.805945 CGTGCGTCAGGCCTTACTC 60.806 63.158 15.02 7.80 42.61 2.59
2324 5630 1.292223 GTGCGTCAGGCCTTACTCA 59.708 57.895 15.02 10.51 42.61 3.41
2325 5631 1.014564 GTGCGTCAGGCCTTACTCAC 61.015 60.000 21.04 21.04 42.61 3.51
2326 5632 1.292223 GCGTCAGGCCTTACTCACA 59.708 57.895 15.02 0.00 34.80 3.58
2327 5633 0.737715 GCGTCAGGCCTTACTCACAG 60.738 60.000 15.02 0.35 34.80 3.66
2328 5634 0.108615 CGTCAGGCCTTACTCACAGG 60.109 60.000 15.02 0.00 34.08 4.00
2329 5635 0.977395 GTCAGGCCTTACTCACAGGT 59.023 55.000 0.00 0.00 33.40 4.00
2330 5636 0.976641 TCAGGCCTTACTCACAGGTG 59.023 55.000 0.00 0.00 33.40 4.00
2331 5637 0.674895 CAGGCCTTACTCACAGGTGC 60.675 60.000 0.00 0.00 33.40 5.01
2332 5638 1.377333 GGCCTTACTCACAGGTGCC 60.377 63.158 0.00 0.00 33.40 5.01
2333 5639 1.679898 GCCTTACTCACAGGTGCCT 59.320 57.895 0.00 0.00 33.40 4.75
2337 5643 2.124507 TTACTCACAGGTGCCTGGGC 62.125 60.000 20.88 4.43 46.39 5.36
2338 5644 3.957586 CTCACAGGTGCCTGGGCA 61.958 66.667 20.88 10.55 46.39 5.36
2347 5653 2.672996 GCCTGGGCACGTGATGTT 60.673 61.111 22.23 0.00 41.49 2.71
2348 5654 2.981560 GCCTGGGCACGTGATGTTG 61.982 63.158 22.23 5.06 41.49 3.33
2349 5655 2.334946 CCTGGGCACGTGATGTTGG 61.335 63.158 22.23 10.04 0.00 3.77
2350 5656 2.981560 CTGGGCACGTGATGTTGGC 61.982 63.158 22.23 2.58 0.00 4.52
2351 5657 3.747976 GGGCACGTGATGTTGGCC 61.748 66.667 22.23 11.34 38.59 5.36
2352 5658 3.747976 GGCACGTGATGTTGGCCC 61.748 66.667 22.23 4.04 34.38 5.80
2353 5659 2.672996 GCACGTGATGTTGGCCCT 60.673 61.111 22.23 0.00 0.00 5.19
2354 5660 2.981560 GCACGTGATGTTGGCCCTG 61.982 63.158 22.23 0.00 0.00 4.45
2355 5661 1.302431 CACGTGATGTTGGCCCTGA 60.302 57.895 10.90 0.00 0.00 3.86
2356 5662 1.003355 ACGTGATGTTGGCCCTGAG 60.003 57.895 0.00 0.00 0.00 3.35
2357 5663 1.296392 CGTGATGTTGGCCCTGAGA 59.704 57.895 0.00 0.00 0.00 3.27
2358 5664 0.107508 CGTGATGTTGGCCCTGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
2359 5665 1.386533 GTGATGTTGGCCCTGAGATG 58.613 55.000 0.00 0.00 0.00 2.90
2360 5666 1.065199 GTGATGTTGGCCCTGAGATGA 60.065 52.381 0.00 0.00 0.00 2.92
2361 5667 1.634973 TGATGTTGGCCCTGAGATGAA 59.365 47.619 0.00 0.00 0.00 2.57
2362 5668 2.242965 TGATGTTGGCCCTGAGATGAAT 59.757 45.455 0.00 0.00 0.00 2.57
2363 5669 2.133281 TGTTGGCCCTGAGATGAATG 57.867 50.000 0.00 0.00 0.00 2.67
2364 5670 0.743097 GTTGGCCCTGAGATGAATGC 59.257 55.000 0.00 0.00 0.00 3.56
2365 5671 0.749091 TTGGCCCTGAGATGAATGCG 60.749 55.000 0.00 0.00 0.00 4.73
2366 5672 1.895707 GGCCCTGAGATGAATGCGG 60.896 63.158 0.00 0.00 0.00 5.69
2367 5673 1.146930 GCCCTGAGATGAATGCGGA 59.853 57.895 0.00 0.00 0.00 5.54
2368 5674 0.883814 GCCCTGAGATGAATGCGGAG 60.884 60.000 0.00 0.00 0.00 4.63
2384 5690 3.951979 CGGAGCAACTACATGAATTCC 57.048 47.619 0.00 0.00 0.00 3.01
2385 5691 3.535561 CGGAGCAACTACATGAATTCCT 58.464 45.455 0.00 0.00 0.00 3.36
2386 5692 3.557595 CGGAGCAACTACATGAATTCCTC 59.442 47.826 0.00 0.00 0.00 3.71
2387 5693 3.557595 GGAGCAACTACATGAATTCCTCG 59.442 47.826 0.00 0.00 0.00 4.63
2388 5694 2.939103 AGCAACTACATGAATTCCTCGC 59.061 45.455 0.00 0.00 0.00 5.03
2389 5695 2.677836 GCAACTACATGAATTCCTCGCA 59.322 45.455 0.00 0.00 0.00 5.10
2390 5696 3.485877 GCAACTACATGAATTCCTCGCAC 60.486 47.826 0.00 0.00 0.00 5.34
2391 5697 3.895232 ACTACATGAATTCCTCGCACT 57.105 42.857 0.00 0.00 0.00 4.40
2392 5698 5.109210 CAACTACATGAATTCCTCGCACTA 58.891 41.667 0.00 0.00 0.00 2.74
2393 5699 5.537300 ACTACATGAATTCCTCGCACTAT 57.463 39.130 0.00 0.00 0.00 2.12
2394 5700 5.292765 ACTACATGAATTCCTCGCACTATG 58.707 41.667 0.00 0.00 0.00 2.23
2395 5701 3.470709 ACATGAATTCCTCGCACTATGG 58.529 45.455 0.00 0.00 0.00 2.74
2396 5702 2.620251 TGAATTCCTCGCACTATGGG 57.380 50.000 2.27 0.00 0.00 4.00
2397 5703 1.230324 GAATTCCTCGCACTATGGGC 58.770 55.000 0.00 0.00 0.00 5.36
2398 5704 0.179018 AATTCCTCGCACTATGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
2399 5705 1.344953 ATTCCTCGCACTATGGGCCA 61.345 55.000 9.61 9.61 0.00 5.36
2400 5706 1.971505 TTCCTCGCACTATGGGCCAG 61.972 60.000 13.78 0.82 0.00 4.85
2401 5707 2.434843 CCTCGCACTATGGGCCAGA 61.435 63.158 13.78 6.50 0.00 3.86
2402 5708 1.522092 CTCGCACTATGGGCCAGAA 59.478 57.895 13.78 1.08 0.00 3.02
2403 5709 0.811616 CTCGCACTATGGGCCAGAAC 60.812 60.000 13.78 0.00 0.00 3.01
2404 5710 2.173669 CGCACTATGGGCCAGAACG 61.174 63.158 13.78 7.97 0.00 3.95
2405 5711 1.819632 GCACTATGGGCCAGAACGG 60.820 63.158 13.78 0.00 38.11 4.44
2406 5712 1.904771 CACTATGGGCCAGAACGGA 59.095 57.895 13.78 0.00 36.56 4.69
2407 5713 0.251916 CACTATGGGCCAGAACGGAA 59.748 55.000 13.78 0.00 36.56 4.30
2408 5714 0.252197 ACTATGGGCCAGAACGGAAC 59.748 55.000 13.78 0.00 36.56 3.62
2409 5715 0.251916 CTATGGGCCAGAACGGAACA 59.748 55.000 13.78 0.00 36.56 3.18
2410 5716 0.693622 TATGGGCCAGAACGGAACAA 59.306 50.000 13.78 0.00 36.56 2.83
2411 5717 0.178975 ATGGGCCAGAACGGAACAAA 60.179 50.000 13.78 0.00 36.56 2.83
2412 5718 0.178975 TGGGCCAGAACGGAACAAAT 60.179 50.000 0.00 0.00 36.56 2.32
2413 5719 0.526211 GGGCCAGAACGGAACAAATC 59.474 55.000 4.39 0.00 36.56 2.17
2414 5720 1.243902 GGCCAGAACGGAACAAATCA 58.756 50.000 0.00 0.00 36.56 2.57
2415 5721 1.818674 GGCCAGAACGGAACAAATCAT 59.181 47.619 0.00 0.00 36.56 2.45
2416 5722 2.415893 GGCCAGAACGGAACAAATCATG 60.416 50.000 0.00 0.00 36.56 3.07
2417 5723 2.867429 CCAGAACGGAACAAATCATGC 58.133 47.619 0.00 0.00 36.56 4.06
2418 5724 2.489329 CCAGAACGGAACAAATCATGCT 59.511 45.455 0.00 0.00 36.56 3.79
2419 5725 3.057315 CCAGAACGGAACAAATCATGCTT 60.057 43.478 0.00 0.00 36.56 3.91
2420 5726 4.155826 CCAGAACGGAACAAATCATGCTTA 59.844 41.667 0.00 0.00 36.56 3.09
2421 5727 5.327091 CAGAACGGAACAAATCATGCTTAG 58.673 41.667 0.00 0.00 0.00 2.18
2422 5728 3.764885 ACGGAACAAATCATGCTTAGC 57.235 42.857 0.00 0.00 0.00 3.09
2423 5729 2.095853 ACGGAACAAATCATGCTTAGCG 59.904 45.455 0.00 0.00 0.00 4.26
2424 5730 2.351418 CGGAACAAATCATGCTTAGCGA 59.649 45.455 0.00 0.00 0.00 4.93
2425 5731 3.544834 CGGAACAAATCATGCTTAGCGAG 60.545 47.826 0.00 0.00 0.00 5.03
2426 5732 3.242870 GGAACAAATCATGCTTAGCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
2427 5733 3.266510 ACAAATCATGCTTAGCGAGGA 57.733 42.857 0.00 0.00 0.00 3.71
2428 5734 2.939103 ACAAATCATGCTTAGCGAGGAC 59.061 45.455 0.00 0.00 0.00 3.85
2429 5735 2.246719 AATCATGCTTAGCGAGGACC 57.753 50.000 0.00 0.00 0.00 4.46
2430 5736 0.032678 ATCATGCTTAGCGAGGACCG 59.967 55.000 0.00 0.00 42.21 4.79
2431 5737 1.592669 CATGCTTAGCGAGGACCGG 60.593 63.158 0.00 0.00 39.04 5.28
2432 5738 3.447025 ATGCTTAGCGAGGACCGGC 62.447 63.158 0.00 2.65 39.04 6.13
2433 5739 4.893601 GCTTAGCGAGGACCGGCC 62.894 72.222 0.00 3.58 39.04 6.13
2434 5740 3.458163 CTTAGCGAGGACCGGCCA 61.458 66.667 15.92 0.00 40.02 5.36
2435 5741 3.432051 CTTAGCGAGGACCGGCCAG 62.432 68.421 15.92 10.66 40.02 4.85
2436 5742 3.949885 TTAGCGAGGACCGGCCAGA 62.950 63.158 15.92 0.00 40.02 3.86
2439 5745 3.827898 CGAGGACCGGCCAGACTC 61.828 72.222 15.92 4.46 40.02 3.36
2440 5746 3.827898 GAGGACCGGCCAGACTCG 61.828 72.222 15.92 0.00 40.02 4.18
2441 5747 4.361971 AGGACCGGCCAGACTCGA 62.362 66.667 15.92 0.00 40.02 4.04
2442 5748 3.148279 GGACCGGCCAGACTCGAT 61.148 66.667 0.00 0.00 36.34 3.59
2443 5749 2.722201 GGACCGGCCAGACTCGATT 61.722 63.158 0.00 0.00 36.34 3.34
2444 5750 1.519455 GACCGGCCAGACTCGATTG 60.519 63.158 0.00 0.00 0.00 2.67
2445 5751 2.892425 CCGGCCAGACTCGATTGC 60.892 66.667 2.24 0.00 0.00 3.56
2446 5752 2.892425 CGGCCAGACTCGATTGCC 60.892 66.667 2.24 0.00 38.74 4.52
2447 5753 2.586792 GGCCAGACTCGATTGCCT 59.413 61.111 0.00 0.00 39.05 4.75
2448 5754 1.817099 GGCCAGACTCGATTGCCTG 60.817 63.158 0.00 0.00 39.05 4.85
2449 5755 1.817099 GCCAGACTCGATTGCCTGG 60.817 63.158 14.44 14.44 46.67 4.45
2450 5756 1.153289 CCAGACTCGATTGCCTGGG 60.153 63.158 12.14 0.00 41.76 4.45
2451 5757 1.817099 CAGACTCGATTGCCTGGGC 60.817 63.158 4.43 4.43 42.35 5.36
2452 5758 1.992277 AGACTCGATTGCCTGGGCT 60.992 57.895 13.05 0.00 42.51 5.19
2453 5759 1.078143 GACTCGATTGCCTGGGCTT 60.078 57.895 13.05 0.40 42.51 4.35
2454 5760 1.372087 GACTCGATTGCCTGGGCTTG 61.372 60.000 13.05 0.00 42.51 4.01
2455 5761 2.045045 TCGATTGCCTGGGCTTGG 60.045 61.111 13.05 2.57 42.51 3.61
2456 5762 3.142838 CGATTGCCTGGGCTTGGG 61.143 66.667 13.05 0.00 42.51 4.12
2457 5763 2.761213 GATTGCCTGGGCTTGGGG 60.761 66.667 13.05 0.00 42.51 4.96
2458 5764 3.275271 ATTGCCTGGGCTTGGGGA 61.275 61.111 13.05 0.00 42.51 4.81
2459 5765 2.803593 GATTGCCTGGGCTTGGGGAA 62.804 60.000 13.05 0.00 42.51 3.97
2460 5766 2.399600 ATTGCCTGGGCTTGGGGAAA 62.400 55.000 13.05 0.00 42.51 3.13
2461 5767 2.681421 GCCTGGGCTTGGGGAAAG 60.681 66.667 4.12 0.00 39.07 2.62
2462 5768 2.037847 CCTGGGCTTGGGGAAAGG 59.962 66.667 0.00 0.00 36.30 3.11
2463 5769 2.547595 CCTGGGCTTGGGGAAAGGA 61.548 63.158 0.00 0.00 36.30 3.36
2464 5770 1.699752 CTGGGCTTGGGGAAAGGAT 59.300 57.895 0.00 0.00 36.30 3.24
2465 5771 0.685458 CTGGGCTTGGGGAAAGGATG 60.685 60.000 0.00 0.00 36.30 3.51
2466 5772 1.381735 GGGCTTGGGGAAAGGATGG 60.382 63.158 0.00 0.00 36.30 3.51
2467 5773 2.060383 GGCTTGGGGAAAGGATGGC 61.060 63.158 0.00 0.00 36.30 4.40
2468 5774 1.000866 GCTTGGGGAAAGGATGGCT 59.999 57.895 0.00 0.00 36.30 4.75
2469 5775 1.039785 GCTTGGGGAAAGGATGGCTC 61.040 60.000 0.00 0.00 36.30 4.70
2470 5776 0.332632 CTTGGGGAAAGGATGGCTCA 59.667 55.000 0.00 0.00 31.68 4.26
2471 5777 1.009997 TTGGGGAAAGGATGGCTCAT 58.990 50.000 0.00 0.00 0.00 2.90
2472 5778 1.905839 TGGGGAAAGGATGGCTCATA 58.094 50.000 0.00 0.00 0.00 2.15
2473 5779 1.494721 TGGGGAAAGGATGGCTCATAC 59.505 52.381 0.00 0.00 0.00 2.39
2474 5780 1.777272 GGGGAAAGGATGGCTCATACT 59.223 52.381 0.00 0.00 36.45 2.12
2475 5781 2.224646 GGGGAAAGGATGGCTCATACTC 60.225 54.545 0.94 0.00 33.27 2.59
2476 5782 2.708325 GGGAAAGGATGGCTCATACTCT 59.292 50.000 0.94 0.00 33.27 3.24
2477 5783 3.904339 GGGAAAGGATGGCTCATACTCTA 59.096 47.826 0.94 0.00 33.27 2.43
2478 5784 4.262678 GGGAAAGGATGGCTCATACTCTAC 60.263 50.000 0.94 0.00 33.27 2.59
2479 5785 4.591072 GGAAAGGATGGCTCATACTCTACT 59.409 45.833 0.94 0.00 33.27 2.57
2480 5786 5.279256 GGAAAGGATGGCTCATACTCTACTC 60.279 48.000 0.94 0.00 33.27 2.59
2481 5787 3.417101 AGGATGGCTCATACTCTACTCG 58.583 50.000 0.00 0.00 26.80 4.18
2482 5788 2.094957 GGATGGCTCATACTCTACTCGC 60.095 54.545 0.00 0.00 0.00 5.03
2483 5789 2.350057 TGGCTCATACTCTACTCGCT 57.650 50.000 0.00 0.00 0.00 4.93
2484 5790 2.222886 TGGCTCATACTCTACTCGCTC 58.777 52.381 0.00 0.00 0.00 5.03
2485 5791 1.195900 GGCTCATACTCTACTCGCTCG 59.804 57.143 0.00 0.00 0.00 5.03
2486 5792 1.195900 GCTCATACTCTACTCGCTCGG 59.804 57.143 0.00 0.00 0.00 4.63
2487 5793 1.195900 CTCATACTCTACTCGCTCGGC 59.804 57.143 0.00 0.00 0.00 5.54
2503 5809 3.619054 GCGTATGAGCCTCGCTTC 58.381 61.111 0.00 0.00 45.29 3.86
2504 5810 1.066587 GCGTATGAGCCTCGCTTCT 59.933 57.895 0.00 0.00 45.29 2.85
2505 5811 1.211818 GCGTATGAGCCTCGCTTCTG 61.212 60.000 0.00 0.00 45.29 3.02
2506 5812 0.596083 CGTATGAGCCTCGCTTCTGG 60.596 60.000 0.00 0.00 39.88 3.86
2507 5813 0.249657 GTATGAGCCTCGCTTCTGGG 60.250 60.000 0.00 0.00 39.88 4.45
2508 5814 1.402896 TATGAGCCTCGCTTCTGGGG 61.403 60.000 0.00 0.00 39.88 4.96
2509 5815 3.394836 GAGCCTCGCTTCTGGGGT 61.395 66.667 0.00 0.00 39.88 4.95
2510 5816 3.378399 GAGCCTCGCTTCTGGGGTC 62.378 68.421 0.00 0.00 39.88 4.46
2511 5817 4.821589 GCCTCGCTTCTGGGGTCG 62.822 72.222 0.00 0.00 0.00 4.79
2512 5818 3.068691 CCTCGCTTCTGGGGTCGA 61.069 66.667 0.00 0.00 0.00 4.20
2513 5819 2.492090 CTCGCTTCTGGGGTCGAG 59.508 66.667 0.00 0.00 41.66 4.04
2514 5820 2.035155 TCGCTTCTGGGGTCGAGA 59.965 61.111 0.00 0.00 0.00 4.04
2515 5821 1.605451 TCGCTTCTGGGGTCGAGAA 60.605 57.895 0.00 0.00 0.00 2.87
2516 5822 1.153745 CGCTTCTGGGGTCGAGAAG 60.154 63.158 13.04 13.04 46.31 2.85
2517 5823 1.878656 CGCTTCTGGGGTCGAGAAGT 61.879 60.000 16.81 0.00 45.62 3.01
2518 5824 0.390472 GCTTCTGGGGTCGAGAAGTG 60.390 60.000 16.81 0.17 45.62 3.16
2519 5825 0.247736 CTTCTGGGGTCGAGAAGTGG 59.752 60.000 10.26 0.00 41.03 4.00
2520 5826 0.471211 TTCTGGGGTCGAGAAGTGGT 60.471 55.000 0.00 0.00 0.00 4.16
2521 5827 1.185618 TCTGGGGTCGAGAAGTGGTG 61.186 60.000 0.00 0.00 0.00 4.17
2522 5828 2.047179 GGGGTCGAGAAGTGGTGC 60.047 66.667 0.00 0.00 0.00 5.01
2523 5829 2.047179 GGGTCGAGAAGTGGTGCC 60.047 66.667 0.00 0.00 0.00 5.01
2524 5830 2.432628 GGTCGAGAAGTGGTGCCG 60.433 66.667 0.00 0.00 0.00 5.69
2525 5831 2.649034 GTCGAGAAGTGGTGCCGA 59.351 61.111 0.00 0.00 0.00 5.54
2526 5832 1.733399 GTCGAGAAGTGGTGCCGAC 60.733 63.158 0.00 0.00 41.85 4.79
2527 5833 2.197605 TCGAGAAGTGGTGCCGACA 61.198 57.895 0.00 0.00 0.00 4.35
2528 5834 1.734477 CGAGAAGTGGTGCCGACAG 60.734 63.158 0.00 0.00 0.00 3.51
2529 5835 2.029844 GAGAAGTGGTGCCGACAGC 61.030 63.158 0.00 0.00 44.74 4.40
2538 5844 3.555428 GCCGACAGCAGAGTTCAC 58.445 61.111 0.00 0.00 42.97 3.18
2539 5845 2.029844 GCCGACAGCAGAGTTCACC 61.030 63.158 0.00 0.00 42.97 4.02
2540 5846 1.668294 CCGACAGCAGAGTTCACCT 59.332 57.895 0.00 0.00 0.00 4.00
2541 5847 0.668706 CCGACAGCAGAGTTCACCTG 60.669 60.000 0.00 0.00 34.88 4.00
2542 5848 0.668706 CGACAGCAGAGTTCACCTGG 60.669 60.000 0.00 0.00 32.51 4.45
2543 5849 0.952984 GACAGCAGAGTTCACCTGGC 60.953 60.000 0.00 0.00 32.51 4.85
2544 5850 2.031516 CAGCAGAGTTCACCTGGCG 61.032 63.158 0.00 0.00 32.51 5.69
2545 5851 2.743928 GCAGAGTTCACCTGGCGG 60.744 66.667 0.00 0.00 32.51 6.13
2547 5853 1.374758 CAGAGTTCACCTGGCGGTC 60.375 63.158 0.00 0.00 43.24 4.79
2548 5854 2.047179 GAGTTCACCTGGCGGTCC 60.047 66.667 0.00 0.00 43.24 4.46
2549 5855 2.847234 AGTTCACCTGGCGGTCCA 60.847 61.111 0.00 0.00 43.24 4.02
2572 5878 4.016706 CCCCTCGGGTGTCGCTTT 62.017 66.667 0.55 0.00 38.25 3.51
2573 5879 2.032071 CCCTCGGGTGTCGCTTTT 59.968 61.111 0.00 0.00 39.05 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 1193 4.667573 TGTTGGGCATTTATTGGACTACA 58.332 39.130 0.00 0.00 0.00 2.74
145 1277 3.800685 TCCAACGTGGAGTGGCACG 62.801 63.158 12.71 0.00 42.67 5.34
155 1287 4.450757 TGTTGAATACATCACTCCAACGTG 59.549 41.667 0.00 0.00 37.92 4.49
232 1364 6.566079 TGACTACCCTCATTGAAATCTCAT 57.434 37.500 0.00 0.00 0.00 2.90
258 1391 0.731417 GACGCGAACTAGGAGCACTA 59.269 55.000 15.93 0.00 0.00 2.74
483 1618 5.744490 ACTTTTCAAAAGATGTTCGTACCG 58.256 37.500 17.05 0.00 0.00 4.02
524 1659 7.877097 TGCATTTAAGAGGTGTTAATGCAATTT 59.123 29.630 15.84 0.00 37.87 1.82
536 1671 3.207474 GCACTGTGCATTTAAGAGGTG 57.793 47.619 26.70 0.00 44.26 4.00
643 1778 0.883833 CTTTTCGGTGAGCCTTGCAT 59.116 50.000 0.00 0.00 0.00 3.96
654 1789 4.538746 TTTGTGTTTTTCCCTTTTCGGT 57.461 36.364 0.00 0.00 0.00 4.69
656 1791 7.095397 GGGATATTTTGTGTTTTTCCCTTTTCG 60.095 37.037 0.00 0.00 38.62 3.46
657 1792 8.094798 GGGATATTTTGTGTTTTTCCCTTTTC 57.905 34.615 0.00 0.00 38.62 2.29
735 1870 2.172717 GGTAACCCATGTATGTGAGGCT 59.827 50.000 0.00 0.00 0.00 4.58
736 1871 2.572290 GGTAACCCATGTATGTGAGGC 58.428 52.381 0.00 0.00 0.00 4.70
815 2787 7.946655 TTATAGCAGGTTATTGACGATTCAG 57.053 36.000 0.00 0.00 31.71 3.02
1332 3761 4.884164 CCAAGAATAGGTCCAAAGTCCATC 59.116 45.833 0.00 0.00 0.00 3.51
1386 3823 1.327460 CATATCTTCGTGCACCCAACG 59.673 52.381 12.15 0.00 0.00 4.10
1642 4079 8.437274 AGGGATACAAATAATCGATACTTCCT 57.563 34.615 0.00 0.00 39.74 3.36
1719 4157 6.712095 TGACAATATGCATGGGATCTCTTTAC 59.288 38.462 10.16 0.00 0.00 2.01
1741 4179 0.741915 TTTTGAACGGGTTGCCTGAC 59.258 50.000 0.38 0.00 33.36 3.51
1750 4188 4.667262 TGCGATTTATGATTTTGAACGGG 58.333 39.130 0.00 0.00 0.00 5.28
1882 4320 4.468689 GGTAGAGCGGGTGGTGCC 62.469 72.222 0.00 0.00 0.00 5.01
1922 4360 1.068402 CATCTTTGTTGATGCCGTGCA 60.068 47.619 1.01 1.01 44.86 4.57
1938 4376 9.388506 CAGTACAGGATATTTTTCTTGTCATCT 57.611 33.333 0.00 0.00 37.20 2.90
1953 4391 5.221185 GCAATCGTTAGGACAGTACAGGATA 60.221 44.000 0.00 0.00 0.00 2.59
2053 5359 6.875726 TGAAAGTTATTCTCAGGTGTGATGAG 59.124 38.462 0.00 0.00 44.57 2.90
2118 5424 4.768448 TCCTCATGTTCATTTGCAATGAGT 59.232 37.500 18.00 5.84 34.04 3.41
2144 5450 3.576982 CTGAATAATTGCATGGCCTCCAT 59.423 43.478 3.32 0.00 46.37 3.41
2145 5451 2.960384 CTGAATAATTGCATGGCCTCCA 59.040 45.455 3.32 0.00 38.19 3.86
2146 5452 3.225104 TCTGAATAATTGCATGGCCTCC 58.775 45.455 3.32 0.00 0.00 4.30
2147 5453 3.305199 GCTCTGAATAATTGCATGGCCTC 60.305 47.826 3.32 0.00 0.00 4.70
2148 5454 2.626743 GCTCTGAATAATTGCATGGCCT 59.373 45.455 3.32 0.00 0.00 5.19
2149 5455 2.606308 CGCTCTGAATAATTGCATGGCC 60.606 50.000 0.00 0.00 0.00 5.36
2150 5456 2.606308 CCGCTCTGAATAATTGCATGGC 60.606 50.000 0.00 0.00 0.00 4.40
2151 5457 2.606308 GCCGCTCTGAATAATTGCATGG 60.606 50.000 0.00 0.00 0.00 3.66
2152 5458 2.033675 TGCCGCTCTGAATAATTGCATG 59.966 45.455 0.00 0.00 0.00 4.06
2153 5459 2.300433 TGCCGCTCTGAATAATTGCAT 58.700 42.857 0.00 0.00 0.00 3.96
2154 5460 1.748950 TGCCGCTCTGAATAATTGCA 58.251 45.000 0.00 0.00 0.00 4.08
2155 5461 2.454055 GTTGCCGCTCTGAATAATTGC 58.546 47.619 0.00 0.00 0.00 3.56
2156 5462 2.708514 CGTTGCCGCTCTGAATAATTG 58.291 47.619 0.00 0.00 0.00 2.32
2169 5475 1.326576 CAACTTTACATGCGTTGCCG 58.673 50.000 0.00 0.00 32.68 5.69
2170 5476 1.668628 CCCAACTTTACATGCGTTGCC 60.669 52.381 10.50 0.00 37.34 4.52
2171 5477 1.000717 ACCCAACTTTACATGCGTTGC 60.001 47.619 10.50 0.00 37.34 4.17
2172 5478 2.292016 TCACCCAACTTTACATGCGTTG 59.708 45.455 0.00 1.84 38.14 4.10
2173 5479 2.577700 TCACCCAACTTTACATGCGTT 58.422 42.857 0.00 0.00 0.00 4.84
2174 5480 2.264005 TCACCCAACTTTACATGCGT 57.736 45.000 0.00 0.00 0.00 5.24
2175 5481 2.159393 CCATCACCCAACTTTACATGCG 60.159 50.000 0.00 0.00 0.00 4.73
2176 5482 2.166254 CCCATCACCCAACTTTACATGC 59.834 50.000 0.00 0.00 0.00 4.06
2177 5483 3.696045 TCCCATCACCCAACTTTACATG 58.304 45.455 0.00 0.00 0.00 3.21
2178 5484 3.309121 CCTCCCATCACCCAACTTTACAT 60.309 47.826 0.00 0.00 0.00 2.29
2179 5485 2.041081 CCTCCCATCACCCAACTTTACA 59.959 50.000 0.00 0.00 0.00 2.41
2180 5486 2.723273 CCTCCCATCACCCAACTTTAC 58.277 52.381 0.00 0.00 0.00 2.01
2181 5487 1.005450 GCCTCCCATCACCCAACTTTA 59.995 52.381 0.00 0.00 0.00 1.85
2182 5488 0.251787 GCCTCCCATCACCCAACTTT 60.252 55.000 0.00 0.00 0.00 2.66
2183 5489 1.384191 GCCTCCCATCACCCAACTT 59.616 57.895 0.00 0.00 0.00 2.66
2184 5490 1.852157 TGCCTCCCATCACCCAACT 60.852 57.895 0.00 0.00 0.00 3.16
2185 5491 1.379044 CTGCCTCCCATCACCCAAC 60.379 63.158 0.00 0.00 0.00 3.77
2186 5492 2.615465 CCTGCCTCCCATCACCCAA 61.615 63.158 0.00 0.00 0.00 4.12
2187 5493 3.016971 CCTGCCTCCCATCACCCA 61.017 66.667 0.00 0.00 0.00 4.51
2188 5494 4.512914 GCCTGCCTCCCATCACCC 62.513 72.222 0.00 0.00 0.00 4.61
2189 5495 4.864334 CGCCTGCCTCCCATCACC 62.864 72.222 0.00 0.00 0.00 4.02
2196 5502 3.134127 AAAATCGCGCCTGCCTCC 61.134 61.111 0.00 0.00 38.08 4.30
2197 5503 2.100991 CAAAATCGCGCCTGCCTC 59.899 61.111 0.00 0.00 38.08 4.70
2198 5504 3.443045 CCAAAATCGCGCCTGCCT 61.443 61.111 0.00 0.00 38.08 4.75
2199 5505 4.496927 CCCAAAATCGCGCCTGCC 62.497 66.667 0.00 0.00 38.08 4.85
2200 5506 2.872337 CTTCCCAAAATCGCGCCTGC 62.872 60.000 0.00 0.00 37.91 4.85
2201 5507 1.137404 CTTCCCAAAATCGCGCCTG 59.863 57.895 0.00 0.00 0.00 4.85
2202 5508 0.394352 ATCTTCCCAAAATCGCGCCT 60.394 50.000 0.00 0.00 0.00 5.52
2203 5509 0.029433 GATCTTCCCAAAATCGCGCC 59.971 55.000 0.00 0.00 0.00 6.53
2204 5510 0.316196 CGATCTTCCCAAAATCGCGC 60.316 55.000 0.00 0.00 36.28 6.86
2205 5511 3.806257 CGATCTTCCCAAAATCGCG 57.194 52.632 0.00 0.00 36.28 5.87
2207 5513 1.331756 CCAGCGATCTTCCCAAAATCG 59.668 52.381 0.00 0.00 43.83 3.34
2208 5514 1.066152 GCCAGCGATCTTCCCAAAATC 59.934 52.381 0.00 0.00 0.00 2.17
2209 5515 1.106285 GCCAGCGATCTTCCCAAAAT 58.894 50.000 0.00 0.00 0.00 1.82
2210 5516 0.038166 AGCCAGCGATCTTCCCAAAA 59.962 50.000 0.00 0.00 0.00 2.44
2211 5517 0.038166 AAGCCAGCGATCTTCCCAAA 59.962 50.000 0.00 0.00 0.00 3.28
2212 5518 0.677731 CAAGCCAGCGATCTTCCCAA 60.678 55.000 0.00 0.00 0.00 4.12
2213 5519 1.078214 CAAGCCAGCGATCTTCCCA 60.078 57.895 0.00 0.00 0.00 4.37
2214 5520 0.392998 TTCAAGCCAGCGATCTTCCC 60.393 55.000 0.00 0.00 0.00 3.97
2215 5521 1.012841 CTTCAAGCCAGCGATCTTCC 58.987 55.000 0.00 0.00 0.00 3.46
2216 5522 1.012841 CCTTCAAGCCAGCGATCTTC 58.987 55.000 0.00 0.00 0.00 2.87
2217 5523 0.326264 ACCTTCAAGCCAGCGATCTT 59.674 50.000 0.00 0.00 0.00 2.40
2218 5524 0.326264 AACCTTCAAGCCAGCGATCT 59.674 50.000 0.00 0.00 0.00 2.75
2219 5525 0.449388 CAACCTTCAAGCCAGCGATC 59.551 55.000 0.00 0.00 0.00 3.69
2220 5526 0.962356 CCAACCTTCAAGCCAGCGAT 60.962 55.000 0.00 0.00 0.00 4.58
2221 5527 1.600636 CCAACCTTCAAGCCAGCGA 60.601 57.895 0.00 0.00 0.00 4.93
2222 5528 1.580845 CTCCAACCTTCAAGCCAGCG 61.581 60.000 0.00 0.00 0.00 5.18
2223 5529 1.246737 CCTCCAACCTTCAAGCCAGC 61.247 60.000 0.00 0.00 0.00 4.85
2224 5530 0.610232 CCCTCCAACCTTCAAGCCAG 60.610 60.000 0.00 0.00 0.00 4.85
2225 5531 1.360393 ACCCTCCAACCTTCAAGCCA 61.360 55.000 0.00 0.00 0.00 4.75
2226 5532 0.178961 AACCCTCCAACCTTCAAGCC 60.179 55.000 0.00 0.00 0.00 4.35
2227 5533 1.248486 GAACCCTCCAACCTTCAAGC 58.752 55.000 0.00 0.00 0.00 4.01
2228 5534 2.508526 CTGAACCCTCCAACCTTCAAG 58.491 52.381 0.00 0.00 0.00 3.02
2229 5535 1.144913 CCTGAACCCTCCAACCTTCAA 59.855 52.381 0.00 0.00 0.00 2.69
2230 5536 0.771127 CCTGAACCCTCCAACCTTCA 59.229 55.000 0.00 0.00 0.00 3.02
2231 5537 1.003696 CTCCTGAACCCTCCAACCTTC 59.996 57.143 0.00 0.00 0.00 3.46
2232 5538 1.068121 CTCCTGAACCCTCCAACCTT 58.932 55.000 0.00 0.00 0.00 3.50
2233 5539 1.492993 GCTCCTGAACCCTCCAACCT 61.493 60.000 0.00 0.00 0.00 3.50
2234 5540 1.002011 GCTCCTGAACCCTCCAACC 60.002 63.158 0.00 0.00 0.00 3.77
2235 5541 0.402121 AAGCTCCTGAACCCTCCAAC 59.598 55.000 0.00 0.00 0.00 3.77
2236 5542 0.401738 CAAGCTCCTGAACCCTCCAA 59.598 55.000 0.00 0.00 0.00 3.53
2237 5543 2.069776 CAAGCTCCTGAACCCTCCA 58.930 57.895 0.00 0.00 0.00 3.86
2238 5544 1.377856 GCAAGCTCCTGAACCCTCC 60.378 63.158 0.00 0.00 0.00 4.30
2239 5545 1.743252 CGCAAGCTCCTGAACCCTC 60.743 63.158 0.00 0.00 0.00 4.30
2240 5546 2.348998 CGCAAGCTCCTGAACCCT 59.651 61.111 0.00 0.00 0.00 4.34
2252 5558 0.095935 GCATATATCTGCGGCGCAAG 59.904 55.000 35.41 26.80 38.41 4.01
2253 5559 0.602372 TGCATATATCTGCGGCGCAA 60.602 50.000 35.41 24.95 45.30 4.85
2254 5560 0.602372 TTGCATATATCTGCGGCGCA 60.602 50.000 34.06 34.06 45.30 6.09
2255 5561 0.095935 CTTGCATATATCTGCGGCGC 59.904 55.000 27.44 27.44 45.30 6.53
2256 5562 1.657594 CTCTTGCATATATCTGCGGCG 59.342 52.381 0.51 0.51 45.30 6.46
2257 5563 2.414481 CACTCTTGCATATATCTGCGGC 59.586 50.000 8.39 0.00 45.30 6.53
2271 5577 0.321122 AGCTTTCGAGGGCACTCTTG 60.321 55.000 15.40 0.00 41.71 3.02
2272 5578 0.036858 GAGCTTTCGAGGGCACTCTT 60.037 55.000 15.40 0.00 41.71 2.85
2273 5579 1.594310 GAGCTTTCGAGGGCACTCT 59.406 57.895 15.40 0.00 41.71 3.24
2274 5580 1.807573 CGAGCTTTCGAGGGCACTC 60.808 63.158 5.68 5.68 40.44 3.51
2275 5581 2.262915 CGAGCTTTCGAGGGCACT 59.737 61.111 12.83 0.00 34.64 4.40
2276 5582 2.815647 CCGAGCTTTCGAGGGCAC 60.816 66.667 12.83 6.73 34.64 5.01
2277 5583 4.082523 CCCGAGCTTTCGAGGGCA 62.083 66.667 12.83 0.00 37.07 5.36
2278 5584 4.840005 CCCCGAGCTTTCGAGGGC 62.840 72.222 8.34 1.88 42.47 5.19
2279 5585 4.162690 CCCCCGAGCTTTCGAGGG 62.163 72.222 0.42 0.42 44.43 4.30
2296 5602 4.492160 TGACGCACGGATCGCTCC 62.492 66.667 0.00 0.00 38.29 4.70
2297 5603 2.951745 CTGACGCACGGATCGCTC 60.952 66.667 0.00 0.00 0.00 5.03
2298 5604 4.498520 CCTGACGCACGGATCGCT 62.499 66.667 0.00 0.00 0.00 4.93
2301 5607 2.292794 TAAGGCCTGACGCACGGATC 62.293 60.000 5.69 0.00 40.31 3.36
2302 5608 2.355986 TAAGGCCTGACGCACGGAT 61.356 57.895 5.69 0.00 40.31 4.18
2303 5609 2.992689 TAAGGCCTGACGCACGGA 60.993 61.111 5.69 0.00 40.31 4.69
2304 5610 2.813908 GTAAGGCCTGACGCACGG 60.814 66.667 5.69 0.00 40.31 4.94
2305 5611 1.805945 GAGTAAGGCCTGACGCACG 60.806 63.158 18.64 0.00 40.31 5.34
2306 5612 1.014564 GTGAGTAAGGCCTGACGCAC 61.015 60.000 33.49 33.49 38.81 5.34
2307 5613 1.292223 GTGAGTAAGGCCTGACGCA 59.708 57.895 21.98 21.98 40.31 5.24
2308 5614 0.737715 CTGTGAGTAAGGCCTGACGC 60.738 60.000 16.87 16.87 0.00 5.19
2309 5615 0.108615 CCTGTGAGTAAGGCCTGACG 60.109 60.000 15.05 0.00 0.00 4.35
2310 5616 0.977395 ACCTGTGAGTAAGGCCTGAC 59.023 55.000 13.05 13.05 38.48 3.51
2311 5617 0.976641 CACCTGTGAGTAAGGCCTGA 59.023 55.000 5.69 0.00 38.48 3.86
2312 5618 0.674895 GCACCTGTGAGTAAGGCCTG 60.675 60.000 5.69 0.00 38.48 4.85
2313 5619 1.679898 GCACCTGTGAGTAAGGCCT 59.320 57.895 0.00 0.00 38.48 5.19
2314 5620 1.377333 GGCACCTGTGAGTAAGGCC 60.377 63.158 0.00 0.00 38.48 5.19
2315 5621 0.674895 CAGGCACCTGTGAGTAAGGC 60.675 60.000 8.61 0.00 38.48 4.35
2316 5622 0.036010 CCAGGCACCTGTGAGTAAGG 60.036 60.000 15.39 0.00 42.15 2.69
2317 5623 0.036010 CCCAGGCACCTGTGAGTAAG 60.036 60.000 15.39 0.00 42.15 2.34
2318 5624 2.066340 CCCAGGCACCTGTGAGTAA 58.934 57.895 15.39 0.00 42.15 2.24
2319 5625 2.592993 GCCCAGGCACCTGTGAGTA 61.593 63.158 15.39 0.00 42.15 2.59
2320 5626 3.958860 GCCCAGGCACCTGTGAGT 61.959 66.667 15.39 0.00 42.15 3.41
2330 5636 2.672996 AACATCACGTGCCCAGGC 60.673 61.111 11.67 0.38 42.35 4.85
2331 5637 2.334946 CCAACATCACGTGCCCAGG 61.335 63.158 11.67 5.10 0.00 4.45
2332 5638 2.981560 GCCAACATCACGTGCCCAG 61.982 63.158 11.67 2.72 0.00 4.45
2333 5639 2.983030 GCCAACATCACGTGCCCA 60.983 61.111 11.67 0.00 0.00 5.36
2334 5640 3.747976 GGCCAACATCACGTGCCC 61.748 66.667 11.67 0.00 36.07 5.36
2335 5641 3.747976 GGGCCAACATCACGTGCC 61.748 66.667 11.67 6.46 41.42 5.01
2336 5642 2.672996 AGGGCCAACATCACGTGC 60.673 61.111 11.67 0.00 0.00 5.34
2337 5643 1.300971 CTCAGGGCCAACATCACGTG 61.301 60.000 9.94 9.94 0.00 4.49
2338 5644 1.003355 CTCAGGGCCAACATCACGT 60.003 57.895 6.18 0.00 0.00 4.49
2339 5645 0.107508 ATCTCAGGGCCAACATCACG 60.108 55.000 6.18 0.00 0.00 4.35
2340 5646 1.065199 TCATCTCAGGGCCAACATCAC 60.065 52.381 6.18 0.00 0.00 3.06
2341 5647 1.288188 TCATCTCAGGGCCAACATCA 58.712 50.000 6.18 0.00 0.00 3.07
2342 5648 2.425143 TTCATCTCAGGGCCAACATC 57.575 50.000 6.18 0.00 0.00 3.06
2343 5649 2.662866 CATTCATCTCAGGGCCAACAT 58.337 47.619 6.18 0.00 0.00 2.71
2344 5650 1.956636 GCATTCATCTCAGGGCCAACA 60.957 52.381 6.18 0.00 0.00 3.33
2345 5651 0.743097 GCATTCATCTCAGGGCCAAC 59.257 55.000 6.18 0.00 0.00 3.77
2346 5652 0.749091 CGCATTCATCTCAGGGCCAA 60.749 55.000 6.18 0.00 0.00 4.52
2347 5653 1.153107 CGCATTCATCTCAGGGCCA 60.153 57.895 6.18 0.00 0.00 5.36
2348 5654 1.895707 CCGCATTCATCTCAGGGCC 60.896 63.158 0.00 0.00 0.00 5.80
2349 5655 0.883814 CTCCGCATTCATCTCAGGGC 60.884 60.000 0.00 0.00 0.00 5.19
2350 5656 0.883814 GCTCCGCATTCATCTCAGGG 60.884 60.000 0.00 0.00 0.00 4.45
2351 5657 0.179065 TGCTCCGCATTCATCTCAGG 60.179 55.000 0.00 0.00 31.71 3.86
2352 5658 1.329906 GTTGCTCCGCATTCATCTCAG 59.670 52.381 0.00 0.00 38.76 3.35
2353 5659 1.065926 AGTTGCTCCGCATTCATCTCA 60.066 47.619 0.00 0.00 38.76 3.27
2354 5660 1.661341 AGTTGCTCCGCATTCATCTC 58.339 50.000 0.00 0.00 38.76 2.75
2355 5661 2.093500 TGTAGTTGCTCCGCATTCATCT 60.093 45.455 0.00 0.00 38.76 2.90
2356 5662 2.279741 TGTAGTTGCTCCGCATTCATC 58.720 47.619 0.00 0.00 38.76 2.92
2357 5663 2.401583 TGTAGTTGCTCCGCATTCAT 57.598 45.000 0.00 0.00 38.76 2.57
2358 5664 2.009051 CATGTAGTTGCTCCGCATTCA 58.991 47.619 0.00 0.00 38.76 2.57
2359 5665 2.279741 TCATGTAGTTGCTCCGCATTC 58.720 47.619 0.00 0.00 38.76 2.67
2360 5666 2.401583 TCATGTAGTTGCTCCGCATT 57.598 45.000 0.00 0.00 38.76 3.56
2361 5667 2.401583 TTCATGTAGTTGCTCCGCAT 57.598 45.000 0.00 0.00 38.76 4.73
2362 5668 2.401583 ATTCATGTAGTTGCTCCGCA 57.598 45.000 0.00 0.00 36.47 5.69
2363 5669 2.032178 GGAATTCATGTAGTTGCTCCGC 59.968 50.000 7.93 0.00 0.00 5.54
2364 5670 3.535561 AGGAATTCATGTAGTTGCTCCG 58.464 45.455 7.93 0.00 0.00 4.63
2365 5671 3.557595 CGAGGAATTCATGTAGTTGCTCC 59.442 47.826 7.93 6.22 37.11 4.70
2366 5672 3.001736 GCGAGGAATTCATGTAGTTGCTC 59.998 47.826 7.93 14.18 37.08 4.26
2367 5673 2.939103 GCGAGGAATTCATGTAGTTGCT 59.061 45.455 7.93 0.00 0.00 3.91
2368 5674 2.677836 TGCGAGGAATTCATGTAGTTGC 59.322 45.455 7.93 0.94 0.00 4.17
2369 5675 3.935203 AGTGCGAGGAATTCATGTAGTTG 59.065 43.478 7.93 0.00 0.00 3.16
2370 5676 4.207891 AGTGCGAGGAATTCATGTAGTT 57.792 40.909 7.93 0.00 0.00 2.24
2371 5677 3.895232 AGTGCGAGGAATTCATGTAGT 57.105 42.857 7.93 0.00 0.00 2.73
2372 5678 4.687948 CCATAGTGCGAGGAATTCATGTAG 59.312 45.833 7.93 0.00 0.00 2.74
2373 5679 4.503123 CCCATAGTGCGAGGAATTCATGTA 60.503 45.833 7.93 0.00 0.00 2.29
2374 5680 3.470709 CCATAGTGCGAGGAATTCATGT 58.529 45.455 7.93 0.00 0.00 3.21
2375 5681 2.810274 CCCATAGTGCGAGGAATTCATG 59.190 50.000 7.93 0.00 0.00 3.07
2376 5682 2.811873 GCCCATAGTGCGAGGAATTCAT 60.812 50.000 7.93 0.00 0.00 2.57
2377 5683 1.475034 GCCCATAGTGCGAGGAATTCA 60.475 52.381 7.93 0.00 0.00 2.57
2378 5684 1.230324 GCCCATAGTGCGAGGAATTC 58.770 55.000 0.00 0.00 0.00 2.17
2379 5685 0.179018 GGCCCATAGTGCGAGGAATT 60.179 55.000 0.00 0.00 0.00 2.17
2380 5686 1.344953 TGGCCCATAGTGCGAGGAAT 61.345 55.000 0.00 0.00 0.00 3.01
2381 5687 1.971505 CTGGCCCATAGTGCGAGGAA 61.972 60.000 0.00 0.00 31.74 3.36
2382 5688 2.364973 TGGCCCATAGTGCGAGGA 60.365 61.111 0.00 0.00 0.00 3.71
2383 5689 1.971505 TTCTGGCCCATAGTGCGAGG 61.972 60.000 0.00 0.00 35.54 4.63
2384 5690 0.811616 GTTCTGGCCCATAGTGCGAG 60.812 60.000 0.00 0.00 36.08 5.03
2385 5691 1.220749 GTTCTGGCCCATAGTGCGA 59.779 57.895 0.00 0.00 0.00 5.10
2386 5692 2.173669 CGTTCTGGCCCATAGTGCG 61.174 63.158 0.00 0.00 0.00 5.34
2387 5693 1.819632 CCGTTCTGGCCCATAGTGC 60.820 63.158 0.00 0.00 0.00 4.40
2388 5694 0.251916 TTCCGTTCTGGCCCATAGTG 59.748 55.000 0.00 0.00 37.80 2.74
2389 5695 0.252197 GTTCCGTTCTGGCCCATAGT 59.748 55.000 0.00 0.00 37.80 2.12
2390 5696 0.251916 TGTTCCGTTCTGGCCCATAG 59.748 55.000 0.00 0.00 37.80 2.23
2391 5697 0.693622 TTGTTCCGTTCTGGCCCATA 59.306 50.000 0.00 0.00 37.80 2.74
2392 5698 0.178975 TTTGTTCCGTTCTGGCCCAT 60.179 50.000 0.00 0.00 37.80 4.00
2393 5699 0.178975 ATTTGTTCCGTTCTGGCCCA 60.179 50.000 0.00 0.00 37.80 5.36
2394 5700 0.526211 GATTTGTTCCGTTCTGGCCC 59.474 55.000 0.00 0.00 37.80 5.80
2395 5701 1.243902 TGATTTGTTCCGTTCTGGCC 58.756 50.000 0.00 0.00 37.80 5.36
2396 5702 2.867429 CATGATTTGTTCCGTTCTGGC 58.133 47.619 0.00 0.00 37.80 4.85
2397 5703 2.489329 AGCATGATTTGTTCCGTTCTGG 59.511 45.455 0.00 0.00 40.09 3.86
2398 5704 3.837213 AGCATGATTTGTTCCGTTCTG 57.163 42.857 0.00 0.00 0.00 3.02
2399 5705 4.142600 GCTAAGCATGATTTGTTCCGTTCT 60.143 41.667 0.00 0.00 0.00 3.01
2400 5706 4.098416 GCTAAGCATGATTTGTTCCGTTC 58.902 43.478 0.00 0.00 0.00 3.95
2401 5707 3.426159 CGCTAAGCATGATTTGTTCCGTT 60.426 43.478 0.00 0.00 0.00 4.44
2402 5708 2.095853 CGCTAAGCATGATTTGTTCCGT 59.904 45.455 0.00 0.00 0.00 4.69
2403 5709 2.351418 TCGCTAAGCATGATTTGTTCCG 59.649 45.455 0.00 0.00 0.00 4.30
2404 5710 3.242870 CCTCGCTAAGCATGATTTGTTCC 60.243 47.826 0.00 0.00 0.00 3.62
2405 5711 3.623060 TCCTCGCTAAGCATGATTTGTTC 59.377 43.478 0.00 0.00 0.00 3.18
2406 5712 3.375299 GTCCTCGCTAAGCATGATTTGTT 59.625 43.478 0.00 0.00 0.00 2.83
2407 5713 2.939103 GTCCTCGCTAAGCATGATTTGT 59.061 45.455 0.00 0.00 0.00 2.83
2408 5714 2.289002 GGTCCTCGCTAAGCATGATTTG 59.711 50.000 0.00 0.10 0.00 2.32
2409 5715 2.565841 GGTCCTCGCTAAGCATGATTT 58.434 47.619 0.00 0.00 0.00 2.17
2410 5716 1.539065 CGGTCCTCGCTAAGCATGATT 60.539 52.381 0.17 0.17 0.00 2.57
2411 5717 0.032678 CGGTCCTCGCTAAGCATGAT 59.967 55.000 0.00 0.00 0.00 2.45
2412 5718 1.437573 CGGTCCTCGCTAAGCATGA 59.562 57.895 0.00 0.00 0.00 3.07
2413 5719 1.592669 CCGGTCCTCGCTAAGCATG 60.593 63.158 0.00 0.00 37.59 4.06
2414 5720 2.815308 CCGGTCCTCGCTAAGCAT 59.185 61.111 0.00 0.00 37.59 3.79
2415 5721 4.143333 GCCGGTCCTCGCTAAGCA 62.143 66.667 1.90 0.00 37.59 3.91
2416 5722 4.893601 GGCCGGTCCTCGCTAAGC 62.894 72.222 1.90 0.00 37.59 3.09
2417 5723 3.432051 CTGGCCGGTCCTCGCTAAG 62.432 68.421 2.12 0.00 37.59 2.18
2418 5724 3.458163 CTGGCCGGTCCTCGCTAA 61.458 66.667 2.12 0.00 37.59 3.09
2419 5725 4.435970 TCTGGCCGGTCCTCGCTA 62.436 66.667 12.43 0.00 37.59 4.26
2422 5728 3.827898 GAGTCTGGCCGGTCCTCG 61.828 72.222 12.43 1.20 38.88 4.63
2423 5729 3.827898 CGAGTCTGGCCGGTCCTC 61.828 72.222 12.43 16.30 35.26 3.71
2424 5730 3.663815 ATCGAGTCTGGCCGGTCCT 62.664 63.158 12.43 8.90 35.26 3.85
2425 5731 2.722201 AATCGAGTCTGGCCGGTCC 61.722 63.158 12.43 5.67 0.00 4.46
2426 5732 1.519455 CAATCGAGTCTGGCCGGTC 60.519 63.158 12.43 5.99 0.00 4.79
2427 5733 2.579201 CAATCGAGTCTGGCCGGT 59.421 61.111 12.43 0.00 0.00 5.28
2428 5734 2.892425 GCAATCGAGTCTGGCCGG 60.892 66.667 4.71 4.71 0.00 6.13
2429 5735 2.892425 GGCAATCGAGTCTGGCCG 60.892 66.667 0.00 0.00 34.56 6.13
2430 5736 1.817099 CAGGCAATCGAGTCTGGCC 60.817 63.158 12.91 9.27 44.92 5.36
2431 5737 1.817099 CCAGGCAATCGAGTCTGGC 60.817 63.158 11.88 10.69 40.04 4.85
2432 5738 1.153289 CCCAGGCAATCGAGTCTGG 60.153 63.158 16.38 16.38 44.60 3.86
2433 5739 1.817099 GCCCAGGCAATCGAGTCTG 60.817 63.158 3.12 0.00 41.49 3.51
2434 5740 1.557269 AAGCCCAGGCAATCGAGTCT 61.557 55.000 12.03 0.00 44.88 3.24
2435 5741 1.078143 AAGCCCAGGCAATCGAGTC 60.078 57.895 12.03 0.00 44.88 3.36
2436 5742 1.377725 CAAGCCCAGGCAATCGAGT 60.378 57.895 12.03 0.00 44.88 4.18
2437 5743 2.117156 CCAAGCCCAGGCAATCGAG 61.117 63.158 12.03 0.00 44.88 4.04
2438 5744 2.045045 CCAAGCCCAGGCAATCGA 60.045 61.111 12.03 0.00 44.88 3.59
2439 5745 3.142838 CCCAAGCCCAGGCAATCG 61.143 66.667 12.03 0.00 44.88 3.34
2440 5746 2.761213 CCCCAAGCCCAGGCAATC 60.761 66.667 12.03 0.00 44.88 2.67
2441 5747 2.399600 TTTCCCCAAGCCCAGGCAAT 62.400 55.000 12.03 0.00 44.88 3.56
2442 5748 3.093415 TTTCCCCAAGCCCAGGCAA 62.093 57.895 12.03 0.00 44.88 4.52
2443 5749 3.516512 TTTCCCCAAGCCCAGGCA 61.517 61.111 12.03 0.00 44.88 4.75
2444 5750 2.681421 CTTTCCCCAAGCCCAGGC 60.681 66.667 0.00 0.00 42.33 4.85
2445 5751 1.878799 ATCCTTTCCCCAAGCCCAGG 61.879 60.000 0.00 0.00 0.00 4.45
2446 5752 0.685458 CATCCTTTCCCCAAGCCCAG 60.685 60.000 0.00 0.00 0.00 4.45
2447 5753 1.387737 CATCCTTTCCCCAAGCCCA 59.612 57.895 0.00 0.00 0.00 5.36
2448 5754 1.381735 CCATCCTTTCCCCAAGCCC 60.382 63.158 0.00 0.00 0.00 5.19
2449 5755 2.060383 GCCATCCTTTCCCCAAGCC 61.060 63.158 0.00 0.00 0.00 4.35
2450 5756 1.000866 AGCCATCCTTTCCCCAAGC 59.999 57.895 0.00 0.00 0.00 4.01
2451 5757 0.332632 TGAGCCATCCTTTCCCCAAG 59.667 55.000 0.00 0.00 0.00 3.61
2452 5758 1.009997 ATGAGCCATCCTTTCCCCAA 58.990 50.000 0.00 0.00 0.00 4.12
2453 5759 1.494721 GTATGAGCCATCCTTTCCCCA 59.505 52.381 0.00 0.00 0.00 4.96
2454 5760 1.777272 AGTATGAGCCATCCTTTCCCC 59.223 52.381 0.00 0.00 0.00 4.81
2455 5761 2.708325 AGAGTATGAGCCATCCTTTCCC 59.292 50.000 0.00 0.00 0.00 3.97
2456 5762 4.591072 AGTAGAGTATGAGCCATCCTTTCC 59.409 45.833 0.00 0.00 0.00 3.13
2457 5763 5.563867 CGAGTAGAGTATGAGCCATCCTTTC 60.564 48.000 0.00 0.00 0.00 2.62
2458 5764 4.279671 CGAGTAGAGTATGAGCCATCCTTT 59.720 45.833 0.00 0.00 0.00 3.11
2459 5765 3.823873 CGAGTAGAGTATGAGCCATCCTT 59.176 47.826 0.00 0.00 0.00 3.36
2460 5766 3.417101 CGAGTAGAGTATGAGCCATCCT 58.583 50.000 0.00 0.00 0.00 3.24
2461 5767 2.094957 GCGAGTAGAGTATGAGCCATCC 60.095 54.545 0.00 0.00 0.00 3.51
2462 5768 2.817258 AGCGAGTAGAGTATGAGCCATC 59.183 50.000 0.00 0.00 0.00 3.51
2463 5769 2.817258 GAGCGAGTAGAGTATGAGCCAT 59.183 50.000 0.00 0.00 0.00 4.40
2464 5770 2.222886 GAGCGAGTAGAGTATGAGCCA 58.777 52.381 0.00 0.00 0.00 4.75
2465 5771 1.195900 CGAGCGAGTAGAGTATGAGCC 59.804 57.143 0.00 0.00 0.00 4.70
2466 5772 1.195900 CCGAGCGAGTAGAGTATGAGC 59.804 57.143 0.00 0.00 0.00 4.26
2467 5773 1.195900 GCCGAGCGAGTAGAGTATGAG 59.804 57.143 0.00 0.00 0.00 2.90
2468 5774 1.227639 GCCGAGCGAGTAGAGTATGA 58.772 55.000 0.00 0.00 0.00 2.15
2469 5775 3.757623 GCCGAGCGAGTAGAGTATG 57.242 57.895 0.00 0.00 0.00 2.39
2487 5793 0.596083 CCAGAAGCGAGGCTCATACG 60.596 60.000 15.95 1.70 38.25 3.06
2488 5794 0.249657 CCCAGAAGCGAGGCTCATAC 60.250 60.000 15.95 3.09 38.25 2.39
2489 5795 1.402896 CCCCAGAAGCGAGGCTCATA 61.403 60.000 15.95 0.00 38.25 2.15
2490 5796 2.739996 CCCCAGAAGCGAGGCTCAT 61.740 63.158 15.95 0.00 38.25 2.90
2491 5797 3.393970 CCCCAGAAGCGAGGCTCA 61.394 66.667 15.95 0.00 38.25 4.26
2492 5798 3.378399 GACCCCAGAAGCGAGGCTC 62.378 68.421 3.87 3.87 38.25 4.70
2493 5799 3.394836 GACCCCAGAAGCGAGGCT 61.395 66.667 0.00 0.00 42.56 4.58
2494 5800 4.821589 CGACCCCAGAAGCGAGGC 62.822 72.222 0.00 0.00 0.00 4.70
2495 5801 3.068691 TCGACCCCAGAAGCGAGG 61.069 66.667 0.00 0.00 0.00 4.63
2496 5802 2.492090 CTCGACCCCAGAAGCGAG 59.508 66.667 0.00 0.00 43.25 5.03
2497 5803 1.595993 CTTCTCGACCCCAGAAGCGA 61.596 60.000 0.00 0.00 40.30 4.93
2498 5804 1.153745 CTTCTCGACCCCAGAAGCG 60.154 63.158 0.00 0.00 40.30 4.68
2499 5805 4.921834 CTTCTCGACCCCAGAAGC 57.078 61.111 0.00 0.00 40.30 3.86
2501 5807 0.471211 ACCACTTCTCGACCCCAGAA 60.471 55.000 0.00 0.00 0.00 3.02
2502 5808 1.155390 ACCACTTCTCGACCCCAGA 59.845 57.895 0.00 0.00 0.00 3.86
2503 5809 1.293498 CACCACTTCTCGACCCCAG 59.707 63.158 0.00 0.00 0.00 4.45
2504 5810 2.879233 GCACCACTTCTCGACCCCA 61.879 63.158 0.00 0.00 0.00 4.96
2505 5811 2.047179 GCACCACTTCTCGACCCC 60.047 66.667 0.00 0.00 0.00 4.95
2506 5812 2.047179 GGCACCACTTCTCGACCC 60.047 66.667 0.00 0.00 0.00 4.46
2507 5813 2.432628 CGGCACCACTTCTCGACC 60.433 66.667 0.00 0.00 0.00 4.79
2508 5814 1.733399 GTCGGCACCACTTCTCGAC 60.733 63.158 0.00 0.00 42.22 4.20
2509 5815 2.142357 CTGTCGGCACCACTTCTCGA 62.142 60.000 0.00 0.00 0.00 4.04
2510 5816 1.734477 CTGTCGGCACCACTTCTCG 60.734 63.158 0.00 0.00 0.00 4.04
2511 5817 2.029844 GCTGTCGGCACCACTTCTC 61.030 63.158 0.00 0.00 41.35 2.87
2512 5818 2.031163 GCTGTCGGCACCACTTCT 59.969 61.111 0.00 0.00 41.35 2.85
2521 5827 2.029844 GGTGAACTCTGCTGTCGGC 61.030 63.158 0.00 0.00 42.22 5.54
2522 5828 0.668706 CAGGTGAACTCTGCTGTCGG 60.669 60.000 0.00 0.00 0.00 4.79
2523 5829 0.668706 CCAGGTGAACTCTGCTGTCG 60.669 60.000 0.00 0.00 0.00 4.35
2524 5830 0.952984 GCCAGGTGAACTCTGCTGTC 60.953 60.000 0.00 0.00 0.00 3.51
2525 5831 1.072159 GCCAGGTGAACTCTGCTGT 59.928 57.895 0.00 0.00 0.00 4.40
2526 5832 2.031516 CGCCAGGTGAACTCTGCTG 61.032 63.158 0.00 0.00 0.00 4.41
2527 5833 2.345244 CGCCAGGTGAACTCTGCT 59.655 61.111 0.00 0.00 0.00 4.24
2528 5834 2.743928 CCGCCAGGTGAACTCTGC 60.744 66.667 0.00 0.00 0.00 4.26
2556 5862 2.032071 AAAAGCGACACCCGAGGG 59.968 61.111 6.63 6.63 41.76 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.