Multiple sequence alignment - TraesCS6D01G393500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G393500 chr6D 100.000 4975 0 0 1 4975 467302341 467307315 0.000000e+00 9188.0
1 TraesCS6D01G393500 chr6D 99.800 500 1 0 1 500 467294056 467294555 0.000000e+00 918.0
2 TraesCS6D01G393500 chr6D 97.217 503 12 1 1 501 14696104 14695602 0.000000e+00 850.0
3 TraesCS6D01G393500 chr6D 97.217 503 12 1 1 501 142077725 142078227 0.000000e+00 850.0
4 TraesCS6D01G393500 chr6D 97.217 503 12 1 1 501 452972541 452972039 0.000000e+00 850.0
5 TraesCS6D01G393500 chr6D 87.736 212 12 6 4650 4847 464342616 464342405 8.330000e-58 235.0
6 TraesCS6D01G393500 chr6D 88.971 136 7 3 3711 3838 464343125 464342990 1.430000e-35 161.0
7 TraesCS6D01G393500 chr6D 98.276 58 1 0 4918 4975 427110849 427110792 8.810000e-18 102.0
8 TraesCS6D01G393500 chr6D 94.444 54 1 2 4912 4964 25298800 25298748 1.150000e-11 82.4
9 TraesCS6D01G393500 chr6D 100.000 29 0 0 3656 3684 464343170 464343142 3.000000e-03 54.7
10 TraesCS6D01G393500 chr6B 87.683 2184 122 54 491 2595 712657895 712660010 0.000000e+00 2407.0
11 TraesCS6D01G393500 chr6B 95.759 1061 37 4 2673 3727 712660027 712661085 0.000000e+00 1703.0
12 TraesCS6D01G393500 chr6B 82.280 649 57 28 4258 4854 712661707 712662349 4.440000e-140 508.0
13 TraesCS6D01G393500 chr6B 95.420 262 12 0 3771 4032 712661082 712661343 7.700000e-113 418.0
14 TraesCS6D01G393500 chr6B 92.405 158 12 0 3687 3844 708040838 708040681 5.010000e-55 226.0
15 TraesCS6D01G393500 chr6B 87.264 212 7 6 3833 4024 708039367 708039156 1.800000e-54 224.0
16 TraesCS6D01G393500 chr6B 91.925 161 10 1 4696 4853 708038789 708038629 6.480000e-54 222.0
17 TraesCS6D01G393500 chr6B 87.302 189 15 4 4355 4536 708039048 708038862 1.820000e-49 207.0
18 TraesCS6D01G393500 chr6B 80.586 273 21 13 2961 3227 708041803 708041557 1.100000e-41 182.0
19 TraesCS6D01G393500 chr6B 94.000 100 2 1 4218 4313 708039145 708039046 1.120000e-31 148.0
20 TraesCS6D01G393500 chr6B 92.308 52 1 3 3646 3695 708040976 708040926 2.480000e-08 71.3
21 TraesCS6D01G393500 chr6A 92.631 1072 63 8 2672 3727 613761822 613762893 0.000000e+00 1528.0
22 TraesCS6D01G393500 chr6A 88.119 1313 89 33 699 1963 613760229 613761522 0.000000e+00 1498.0
23 TraesCS6D01G393500 chr6A 85.032 942 69 31 3783 4683 613763005 613763915 0.000000e+00 893.0
24 TraesCS6D01G393500 chr6A 91.930 285 21 1 2365 2647 613761556 613761840 1.000000e-106 398.0
25 TraesCS6D01G393500 chr6A 84.706 255 6 13 4216 4439 610928269 610928017 1.800000e-54 224.0
26 TraesCS6D01G393500 chr6A 87.368 190 11 8 4613 4801 610915633 610915456 6.530000e-49 206.0
27 TraesCS6D01G393500 chr6A 96.226 106 4 0 3771 3876 613762890 613762995 1.840000e-39 174.0
28 TraesCS6D01G393500 chr6A 86.111 72 0 6 3982 4043 610928344 610928273 8.940000e-08 69.4
29 TraesCS6D01G393500 chr4A 97.416 503 11 1 1 501 556675046 556674544 0.000000e+00 856.0
30 TraesCS6D01G393500 chr4A 95.238 63 2 1 4913 4975 519630105 519630044 1.140000e-16 99.0
31 TraesCS6D01G393500 chr2D 97.416 503 11 1 1 501 34352857 34352355 0.000000e+00 856.0
32 TraesCS6D01G393500 chr2D 81.645 839 109 33 1155 1990 165002804 165002008 0.000000e+00 654.0
33 TraesCS6D01G393500 chr2D 92.063 63 4 1 4913 4975 428855812 428855751 2.470000e-13 87.9
34 TraesCS6D01G393500 chr1D 97.217 503 12 1 1 501 30569635 30570137 0.000000e+00 850.0
35 TraesCS6D01G393500 chr1D 97.217 503 12 1 1 501 70055889 70055387 0.000000e+00 850.0
36 TraesCS6D01G393500 chr1D 97.217 503 12 1 1 501 121629717 121629215 0.000000e+00 850.0
37 TraesCS6D01G393500 chr1D 81.635 844 106 32 1155 1990 99414381 99415183 0.000000e+00 654.0
38 TraesCS6D01G393500 chr1D 92.308 52 3 1 4910 4961 245970475 245970525 6.910000e-09 73.1
39 TraesCS6D01G393500 chr3B 81.310 840 110 31 1155 1990 25364376 25363580 5.430000e-179 638.0
40 TraesCS6D01G393500 chr3B 94.203 69 3 1 4907 4975 439354898 439354831 2.450000e-18 104.0
41 TraesCS6D01G393500 chrUn 81.049 839 113 30 1155 1990 330714767 330713972 1.180000e-175 627.0
42 TraesCS6D01G393500 chrUn 80.930 839 114 30 1155 1990 330726243 330725448 5.470000e-174 621.0
43 TraesCS6D01G393500 chrUn 80.810 839 115 30 1155 1990 365214661 365215456 2.540000e-172 616.0
44 TraesCS6D01G393500 chrUn 80.691 839 116 33 1155 1990 22240026 22240821 1.180000e-170 610.0
45 TraesCS6D01G393500 chrUn 80.732 628 90 23 1155 1780 398302487 398301889 1.260000e-125 460.0
46 TraesCS6D01G393500 chr2B 80.691 839 114 30 1155 1990 657272341 657271548 4.260000e-170 608.0
47 TraesCS6D01G393500 chr2B 80.305 853 122 31 1155 1990 73173676 73172853 1.980000e-168 603.0
48 TraesCS6D01G393500 chr3D 79.293 198 30 7 3373 3561 491624788 491624593 1.450000e-25 128.0
49 TraesCS6D01G393500 chr7A 98.438 64 0 1 4912 4975 193680476 193680414 1.460000e-20 111.0
50 TraesCS6D01G393500 chr7A 96.875 64 1 1 4912 4975 173855076 173855138 6.810000e-19 106.0
51 TraesCS6D01G393500 chr5D 96.875 64 1 1 4912 4975 391221050 391221112 6.810000e-19 106.0
52 TraesCS6D01G393500 chr5A 95.455 66 2 1 4910 4975 207730250 207730314 2.450000e-18 104.0
53 TraesCS6D01G393500 chr1B 98.276 58 1 0 4918 4975 136300505 136300448 8.810000e-18 102.0
54 TraesCS6D01G393500 chr1A 100.000 42 0 0 2024 2065 95616153 95616194 1.480000e-10 78.7
55 TraesCS6D01G393500 chr4D 88.235 51 4 2 4918 4966 445031303 445031353 5.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G393500 chr6D 467302341 467307315 4974 False 9188.0 9188 100.0000 1 4975 1 chr6D.!!$F3 4974
1 TraesCS6D01G393500 chr6D 14695602 14696104 502 True 850.0 850 97.2170 1 501 1 chr6D.!!$R1 500
2 TraesCS6D01G393500 chr6D 142077725 142078227 502 False 850.0 850 97.2170 1 501 1 chr6D.!!$F1 500
3 TraesCS6D01G393500 chr6D 452972039 452972541 502 True 850.0 850 97.2170 1 501 1 chr6D.!!$R4 500
4 TraesCS6D01G393500 chr6B 712657895 712662349 4454 False 1259.0 2407 90.2855 491 4854 4 chr6B.!!$F1 4363
5 TraesCS6D01G393500 chr6A 613760229 613763915 3686 False 898.2 1528 90.7876 699 4683 5 chr6A.!!$F1 3984
6 TraesCS6D01G393500 chr4A 556674544 556675046 502 True 856.0 856 97.4160 1 501 1 chr4A.!!$R2 500
7 TraesCS6D01G393500 chr2D 34352355 34352857 502 True 856.0 856 97.4160 1 501 1 chr2D.!!$R1 500
8 TraesCS6D01G393500 chr2D 165002008 165002804 796 True 654.0 654 81.6450 1155 1990 1 chr2D.!!$R2 835
9 TraesCS6D01G393500 chr1D 30569635 30570137 502 False 850.0 850 97.2170 1 501 1 chr1D.!!$F1 500
10 TraesCS6D01G393500 chr1D 70055387 70055889 502 True 850.0 850 97.2170 1 501 1 chr1D.!!$R1 500
11 TraesCS6D01G393500 chr1D 121629215 121629717 502 True 850.0 850 97.2170 1 501 1 chr1D.!!$R2 500
12 TraesCS6D01G393500 chr1D 99414381 99415183 802 False 654.0 654 81.6350 1155 1990 1 chr1D.!!$F2 835
13 TraesCS6D01G393500 chr3B 25363580 25364376 796 True 638.0 638 81.3100 1155 1990 1 chr3B.!!$R1 835
14 TraesCS6D01G393500 chrUn 330713972 330714767 795 True 627.0 627 81.0490 1155 1990 1 chrUn.!!$R1 835
15 TraesCS6D01G393500 chrUn 330725448 330726243 795 True 621.0 621 80.9300 1155 1990 1 chrUn.!!$R2 835
16 TraesCS6D01G393500 chrUn 365214661 365215456 795 False 616.0 616 80.8100 1155 1990 1 chrUn.!!$F2 835
17 TraesCS6D01G393500 chrUn 22240026 22240821 795 False 610.0 610 80.6910 1155 1990 1 chrUn.!!$F1 835
18 TraesCS6D01G393500 chrUn 398301889 398302487 598 True 460.0 460 80.7320 1155 1780 1 chrUn.!!$R3 625
19 TraesCS6D01G393500 chr2B 657271548 657272341 793 True 608.0 608 80.6910 1155 1990 1 chr2B.!!$R2 835
20 TraesCS6D01G393500 chr2B 73172853 73173676 823 True 603.0 603 80.3050 1155 1990 1 chr2B.!!$R1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 686 0.371645 GAAGAAGCGATTGAGTGCCG 59.628 55.000 0.00 0.0 0.0 5.69 F
1318 1383 0.320683 TGAGTGGTTCCGATGCACTG 60.321 55.000 0.00 0.0 0.0 3.66 F
1323 1394 0.321653 GGTTCCGATGCACTGGTCTT 60.322 55.000 5.99 0.0 0.0 3.01 F
2317 2459 0.250234 TCCATCGAGTTGCCTTCTGG 59.750 55.000 0.00 0.0 0.0 3.86 F
2389 2531 2.224079 CGCACTTCACTGCACAGTATTT 59.776 45.455 2.38 0.0 40.2 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1890 0.107312 CAGTCCAGCCAAGATCCCAG 60.107 60.000 0.0 0.0 0.00 4.45 R
2151 2274 0.183492 AGAGCACCACTGAAGGCAAA 59.817 50.000 0.0 0.0 0.00 3.68 R
2800 2944 0.810648 TTGATTTCACCATGCGAGGC 59.189 50.000 0.0 0.0 0.00 4.70 R
3886 4148 1.077005 AGCCCCCTGCAAGAATAACAA 59.923 47.619 0.0 0.0 44.83 2.83 R
4361 4828 0.890996 AGCCTACCAGCAGCACAAAC 60.891 55.000 0.0 0.0 34.23 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.477375 CGAGAAATTTGACGGGTTTCGA 59.523 45.455 0.00 0.00 42.43 3.71
214 215 4.624364 TGTGCCTCCACACCGCTG 62.624 66.667 0.00 0.00 46.51 5.18
533 536 2.851263 TTTTCCATGCTCCTGTACGT 57.149 45.000 0.00 0.00 0.00 3.57
534 537 3.965379 TTTTCCATGCTCCTGTACGTA 57.035 42.857 0.00 0.00 0.00 3.57
539 542 3.704566 TCCATGCTCCTGTACGTAAAGAT 59.295 43.478 14.63 0.00 0.00 2.40
594 597 5.261216 ACCCACGGAGATTTACAAAATCAT 58.739 37.500 13.29 1.17 0.00 2.45
671 674 9.852091 ATTAGTTCTTTTCATTCATGAAGAAGC 57.148 29.630 14.54 5.88 46.34 3.86
683 686 0.371645 GAAGAAGCGATTGAGTGCCG 59.628 55.000 0.00 0.00 0.00 5.69
1318 1383 0.320683 TGAGTGGTTCCGATGCACTG 60.321 55.000 0.00 0.00 0.00 3.66
1323 1394 0.321653 GGTTCCGATGCACTGGTCTT 60.322 55.000 5.99 0.00 0.00 3.01
1371 1442 1.067000 GGCTGATCTGATCTGATCCGG 60.067 57.143 29.27 23.73 41.42 5.14
1372 1443 1.067000 GCTGATCTGATCTGATCCGGG 60.067 57.143 29.27 21.98 41.42 5.73
1389 1460 1.733399 GGCGGTCGTCTCTGTTGTC 60.733 63.158 0.00 0.00 0.00 3.18
1485 1556 3.081804 CCACAACTTCCTGGTAATCACC 58.918 50.000 0.00 0.00 46.00 4.02
1520 1591 1.153005 CTGCCTCCCCTTCAGCATC 60.153 63.158 0.00 0.00 34.16 3.91
1523 1594 1.225704 CCTCCCCTTCAGCATCCAC 59.774 63.158 0.00 0.00 0.00 4.02
1614 1690 6.436027 TGTAGAGACTAGATTCTTGTGGGAT 58.564 40.000 5.47 0.00 0.00 3.85
1615 1691 6.547880 TGTAGAGACTAGATTCTTGTGGGATC 59.452 42.308 5.47 0.00 0.00 3.36
1616 1692 4.898861 AGAGACTAGATTCTTGTGGGATCC 59.101 45.833 1.92 1.92 0.00 3.36
1617 1693 4.624913 AGACTAGATTCTTGTGGGATCCA 58.375 43.478 15.23 0.00 0.00 3.41
1647 1723 0.603065 ATCGCCTCAACTTTTTGGGC 59.397 50.000 0.00 0.00 41.83 5.36
1804 1890 4.957372 CGCTGCATTTCTGTTTTTGTTTTC 59.043 37.500 0.00 0.00 0.00 2.29
1858 1958 0.682852 TGGGACAGGAACGGTTGTAG 59.317 55.000 0.00 0.00 36.51 2.74
1859 1959 0.683412 GGGACAGGAACGGTTGTAGT 59.317 55.000 0.00 0.00 36.51 2.73
1869 1969 2.400399 ACGGTTGTAGTGTGATTCGTG 58.600 47.619 0.00 0.00 0.00 4.35
1889 1989 3.433615 GTGTACTGGCTTTAGTTCTGCTG 59.566 47.826 0.00 0.00 32.19 4.41
1920 2020 3.552273 GCTCCGTGTATGGTCGATTACAT 60.552 47.826 8.47 7.12 31.48 2.29
1980 2080 5.992829 TGTAGACGGTGTGAACATGTATTTT 59.007 36.000 0.00 0.00 0.00 1.82
2043 2158 4.092968 GCAGTTTTGTTAGGTAGTCCATCG 59.907 45.833 0.00 0.00 35.89 3.84
2044 2159 5.475719 CAGTTTTGTTAGGTAGTCCATCGA 58.524 41.667 0.00 0.00 35.89 3.59
2045 2160 5.347907 CAGTTTTGTTAGGTAGTCCATCGAC 59.652 44.000 0.00 0.00 39.50 4.20
2054 2169 3.366070 GGTAGTCCATCGACGATGTATGG 60.366 52.174 30.29 20.14 44.28 2.74
2071 2186 6.399639 TGTATGGGTTTCTGTTTCCTTTTC 57.600 37.500 0.00 0.00 0.00 2.29
2091 2206 1.005215 CTTCCTTGGGATCTTGGCTGT 59.995 52.381 0.00 0.00 0.00 4.40
2101 2216 2.099141 TCTTGGCTGTACTGCATGAC 57.901 50.000 23.89 9.01 34.04 3.06
2140 2263 2.014128 ACGGTTGTGGTGACTCTTTTG 58.986 47.619 0.00 0.00 0.00 2.44
2151 2274 4.338400 GGTGACTCTTTTGTTGGCTTTAGT 59.662 41.667 0.00 0.00 0.00 2.24
2165 2288 2.623416 GCTTTAGTTTGCCTTCAGTGGT 59.377 45.455 0.00 0.00 0.00 4.16
2171 2294 0.535780 TTGCCTTCAGTGGTGCTCTG 60.536 55.000 0.00 0.00 0.00 3.35
2190 2313 5.351740 GCTCTGTTTACACTGGATTCTTACC 59.648 44.000 0.00 0.00 0.00 2.85
2208 2331 8.651589 TTCTTACCTGATCTACTCTGAAGAAA 57.348 34.615 0.00 0.00 29.87 2.52
2212 2335 5.130145 ACCTGATCTACTCTGAAGAAATGGG 59.870 44.000 0.00 0.00 0.00 4.00
2213 2336 5.454471 CCTGATCTACTCTGAAGAAATGGGG 60.454 48.000 0.00 0.00 0.00 4.96
2214 2337 5.280499 TGATCTACTCTGAAGAAATGGGGA 58.720 41.667 0.00 0.00 0.00 4.81
2215 2338 5.907662 TGATCTACTCTGAAGAAATGGGGAT 59.092 40.000 0.00 0.00 0.00 3.85
2216 2339 5.620738 TCTACTCTGAAGAAATGGGGATG 57.379 43.478 0.00 0.00 0.00 3.51
2217 2340 5.032846 TCTACTCTGAAGAAATGGGGATGT 58.967 41.667 0.00 0.00 0.00 3.06
2218 2341 3.960571 ACTCTGAAGAAATGGGGATGTG 58.039 45.455 0.00 0.00 0.00 3.21
2226 2349 3.728990 AGAAATGGGGATGTGGGATGTAT 59.271 43.478 0.00 0.00 0.00 2.29
2228 2351 4.934797 AATGGGGATGTGGGATGTATAG 57.065 45.455 0.00 0.00 0.00 1.31
2231 2354 2.290323 GGGGATGTGGGATGTATAGTGC 60.290 54.545 0.00 0.00 0.00 4.40
2255 2378 4.785669 ACTAGTACTCGTCGAATTACCG 57.214 45.455 0.00 0.00 0.00 4.02
2290 2432 3.171348 GGGGGAAGCTGGTTGTCT 58.829 61.111 0.00 0.00 0.00 3.41
2297 2439 3.597255 GGAAGCTGGTTGTCTTAGGTAC 58.403 50.000 0.00 0.00 0.00 3.34
2304 2446 3.446161 TGGTTGTCTTAGGTACTCCATCG 59.554 47.826 0.00 0.00 41.75 3.84
2317 2459 0.250234 TCCATCGAGTTGCCTTCTGG 59.750 55.000 0.00 0.00 0.00 3.86
2370 2512 9.609950 TTTAAAATTTGTACTACACATTACCGC 57.390 29.630 1.79 0.00 36.90 5.68
2389 2531 2.224079 CGCACTTCACTGCACAGTATTT 59.776 45.455 2.38 0.00 40.20 1.40
2439 2581 7.812191 TGCAAATATGACTTAACGCTTCAAAAT 59.188 29.630 0.00 0.00 0.00 1.82
2542 2684 9.076781 TCCTGTTTTCAATTCTTCATATGTTGA 57.923 29.630 1.90 2.24 0.00 3.18
2549 2691 8.735692 TCAATTCTTCATATGTTGAGCATACA 57.264 30.769 1.90 0.00 42.28 2.29
2569 2711 7.254252 GCATACATATGTGTTCAGACTTCTGAC 60.254 40.741 18.81 5.40 42.35 3.51
2620 2762 8.113462 TGCCTTTCCTTATATTTGTACTCCTTT 58.887 33.333 0.00 0.00 0.00 3.11
2621 2763 8.967918 GCCTTTCCTTATATTTGTACTCCTTTT 58.032 33.333 0.00 0.00 0.00 2.27
2681 2823 9.093970 GCAAATGTAATGGGTTTAAGGTATTTC 57.906 33.333 0.00 0.00 0.00 2.17
2714 2856 8.445275 TGTTAGTTCAGCTTGTAATTTTCTGA 57.555 30.769 0.00 0.00 32.58 3.27
2724 2866 9.860898 AGCTTGTAATTTTCTGATGATTTTACC 57.139 29.630 0.00 0.00 0.00 2.85
2743 2885 3.167485 ACCATGTTTGATTGATGGCTGT 58.833 40.909 0.00 0.00 40.41 4.40
2764 2908 7.308830 GGCTGTGTTTATTCTTTTCATCAGTCT 60.309 37.037 0.00 0.00 0.00 3.24
2800 2944 5.584649 TGAGTACTTAATTGGATTGGCGAAG 59.415 40.000 0.00 0.00 0.00 3.79
2896 3040 3.057033 CAGGCATGTTTCTTCAAAGAGGG 60.057 47.826 0.00 0.00 36.22 4.30
3072 3221 4.216257 CAGACAAGTGTGACCCCTAAAATG 59.784 45.833 0.00 0.00 0.00 2.32
3105 3257 4.719273 TCTGATGGTTATATGTGTCACCCA 59.281 41.667 0.00 0.00 0.00 4.51
3134 3287 4.876107 CCTCGTTCTTAGTTATGGTGCATT 59.124 41.667 0.00 0.00 0.00 3.56
3335 3488 3.326880 AGAAGTACGAACCCCACTTTGAT 59.673 43.478 0.00 0.00 32.79 2.57
3487 3642 6.024552 ACTTGTCCAAAACATATTCGCAAT 57.975 33.333 0.00 0.00 37.82 3.56
3727 3886 4.496840 GCTGCCGTTGTTAGTTACACTTTT 60.497 41.667 0.00 0.00 36.21 2.27
3729 3888 5.333513 TGCCGTTGTTAGTTACACTTTTTG 58.666 37.500 0.00 0.00 36.21 2.44
3730 3889 4.205588 GCCGTTGTTAGTTACACTTTTTGC 59.794 41.667 0.00 0.00 36.21 3.68
3731 3890 5.333513 CCGTTGTTAGTTACACTTTTTGCA 58.666 37.500 0.00 0.00 36.21 4.08
3732 3891 5.454232 CCGTTGTTAGTTACACTTTTTGCAG 59.546 40.000 0.00 0.00 36.21 4.41
3733 3892 6.252281 CGTTGTTAGTTACACTTTTTGCAGA 58.748 36.000 0.00 0.00 36.21 4.26
3734 3893 6.743627 CGTTGTTAGTTACACTTTTTGCAGAA 59.256 34.615 0.00 0.00 36.21 3.02
3735 3894 7.271653 CGTTGTTAGTTACACTTTTTGCAGAAA 59.728 33.333 2.07 2.07 36.21 2.52
3736 3895 8.583765 GTTGTTAGTTACACTTTTTGCAGAAAG 58.416 33.333 24.00 24.00 41.34 2.62
3737 3896 6.750039 TGTTAGTTACACTTTTTGCAGAAAGC 59.250 34.615 25.16 11.61 39.65 3.51
3754 3913 7.358830 GCAGAAAGCAGAATATTTATGAGACC 58.641 38.462 5.94 0.00 44.79 3.85
3755 3914 7.228308 GCAGAAAGCAGAATATTTATGAGACCT 59.772 37.037 5.94 0.00 44.79 3.85
3756 3915 8.557864 CAGAAAGCAGAATATTTATGAGACCTG 58.442 37.037 5.94 0.00 30.99 4.00
3757 3916 8.489489 AGAAAGCAGAATATTTATGAGACCTGA 58.511 33.333 5.94 0.00 0.00 3.86
3758 3917 9.282569 GAAAGCAGAATATTTATGAGACCTGAT 57.717 33.333 5.94 0.00 0.00 2.90
3759 3918 9.638176 AAAGCAGAATATTTATGAGACCTGATT 57.362 29.630 5.94 0.00 31.50 2.57
3760 3919 9.638176 AAGCAGAATATTTATGAGACCTGATTT 57.362 29.630 5.94 0.00 0.00 2.17
3770 3929 9.793259 TTTATGAGACCTGATTTATATTGGACC 57.207 33.333 0.00 0.00 0.00 4.46
3771 3930 7.639062 ATGAGACCTGATTTATATTGGACCT 57.361 36.000 0.00 0.00 0.00 3.85
3772 3931 7.451731 TGAGACCTGATTTATATTGGACCTT 57.548 36.000 0.00 0.00 0.00 3.50
3773 3932 7.872138 TGAGACCTGATTTATATTGGACCTTT 58.128 34.615 0.00 0.00 0.00 3.11
3774 3933 7.993183 TGAGACCTGATTTATATTGGACCTTTC 59.007 37.037 0.00 0.00 0.00 2.62
3775 3934 7.872138 AGACCTGATTTATATTGGACCTTTCA 58.128 34.615 0.00 0.00 0.00 2.69
3815 3974 3.198635 CCATTCTCCTTCTGAAGCTACCA 59.801 47.826 11.93 0.00 0.00 3.25
3971 4233 2.223144 GCATGTTCACGAGTACAAAGCA 59.777 45.455 12.51 0.00 33.50 3.91
4148 4414 0.959372 TGGTCCTCTCGGAAGACGTC 60.959 60.000 7.70 7.70 42.08 4.34
4149 4415 1.655885 GGTCCTCTCGGAAGACGTCC 61.656 65.000 13.01 0.00 42.08 4.79
4151 4417 1.677966 CCTCTCGGAAGACGTCCCA 60.678 63.158 13.01 0.00 44.60 4.37
4178 4637 2.092753 TCCATCCTCAGCACCAAGATTC 60.093 50.000 0.00 0.00 0.00 2.52
4189 4648 1.918262 ACCAAGATTCCTCCATCTGCA 59.082 47.619 0.00 0.00 33.52 4.41
4190 4649 2.309755 ACCAAGATTCCTCCATCTGCAA 59.690 45.455 0.00 0.00 33.52 4.08
4199 4665 3.782523 TCCTCCATCTGCAATTACTCCTT 59.217 43.478 0.00 0.00 0.00 3.36
4200 4666 4.968719 TCCTCCATCTGCAATTACTCCTTA 59.031 41.667 0.00 0.00 0.00 2.69
4211 4677 7.513856 TGCAATTACTCCTTATAGGCATGTTA 58.486 34.615 0.00 0.00 34.61 2.41
4212 4678 8.163408 TGCAATTACTCCTTATAGGCATGTTAT 58.837 33.333 0.00 0.00 34.61 1.89
4213 4679 9.667107 GCAATTACTCCTTATAGGCATGTTATA 57.333 33.333 0.00 0.00 34.61 0.98
4227 4694 8.299990 AGGCATGTTATATATGTCTCTACTCC 57.700 38.462 0.00 0.00 35.72 3.85
4236 4703 1.550524 TGTCTCTACTCCGCAGCAAAT 59.449 47.619 0.00 0.00 0.00 2.32
4241 4708 3.002791 TCTACTCCGCAGCAAATTGAAG 58.997 45.455 0.00 0.00 0.00 3.02
4245 4712 3.058224 ACTCCGCAGCAAATTGAAGTTAC 60.058 43.478 0.00 0.00 0.00 2.50
4246 4713 2.227865 TCCGCAGCAAATTGAAGTTACC 59.772 45.455 0.00 0.00 0.00 2.85
4247 4714 2.595386 CGCAGCAAATTGAAGTTACCC 58.405 47.619 0.00 0.00 0.00 3.69
4248 4715 2.228822 CGCAGCAAATTGAAGTTACCCT 59.771 45.455 0.00 0.00 0.00 4.34
4249 4716 3.305335 CGCAGCAAATTGAAGTTACCCTT 60.305 43.478 0.00 0.00 35.59 3.95
4264 4731 6.741724 AGTTACCCTTCCCATACATTTTGAT 58.258 36.000 0.00 0.00 0.00 2.57
4322 4789 4.379918 CCGAGATGAGATACGTGTGCATAT 60.380 45.833 0.00 0.00 0.00 1.78
4335 4802 5.214417 CGTGTGCATATAAATGATGGTTGG 58.786 41.667 0.00 0.00 34.84 3.77
4345 4812 1.213619 TGATGGTTGGGATGAGGCCA 61.214 55.000 5.01 0.00 0.00 5.36
4352 4819 0.324552 TGGGATGAGGCCAAACATGG 60.325 55.000 5.01 0.00 0.00 3.66
4361 4828 2.632512 AGGCCAAACATGGTTACCTTTG 59.367 45.455 5.01 5.34 0.00 2.77
4375 4842 0.461135 CCTTTGTTTGTGCTGCTGGT 59.539 50.000 0.00 0.00 0.00 4.00
4378 4845 1.317613 TTGTTTGTGCTGCTGGTAGG 58.682 50.000 0.00 0.00 0.00 3.18
4392 4861 1.483827 TGGTAGGCTTGAGCATCTCAG 59.516 52.381 5.24 0.00 41.75 3.35
4396 4865 1.353694 AGGCTTGAGCATCTCAGGTTT 59.646 47.619 5.24 0.00 41.75 3.27
4397 4866 1.471684 GGCTTGAGCATCTCAGGTTTG 59.528 52.381 5.24 0.00 41.75 2.93
4398 4867 2.157738 GCTTGAGCATCTCAGGTTTGT 58.842 47.619 7.59 0.00 41.75 2.83
4402 4871 1.200948 GAGCATCTCAGGTTTGTTGCC 59.799 52.381 0.00 0.00 31.12 4.52
4410 4879 3.366396 TCAGGTTTGTTGCCCAAAAGTA 58.634 40.909 0.71 0.00 44.36 2.24
4419 4888 6.777213 TGTTGCCCAAAAGTAAACTCTTTA 57.223 33.333 0.00 0.00 36.75 1.85
4420 4889 7.171630 TGTTGCCCAAAAGTAAACTCTTTAA 57.828 32.000 0.00 0.00 36.75 1.52
4463 4939 1.061711 GTGCTTGCAGATGACACGATC 59.938 52.381 0.00 0.00 0.00 3.69
4475 4954 1.923204 GACACGATCTGAGCATGTGAC 59.077 52.381 0.00 0.00 34.72 3.67
4490 4969 1.985159 TGTGACCTGGGCTCTTTACAT 59.015 47.619 0.00 0.00 0.00 2.29
4517 4996 3.939592 GCTTTACAGTTACAGATCCACCC 59.060 47.826 0.00 0.00 0.00 4.61
4520 4999 1.285280 CAGTTACAGATCCACCCCCA 58.715 55.000 0.00 0.00 0.00 4.96
4527 5009 1.084018 AGATCCACCCCCATTGTGTT 58.916 50.000 0.00 0.00 31.71 3.32
4544 5026 2.030805 GTGTTCATTGCTTGTGGAGGAC 60.031 50.000 0.00 0.00 0.00 3.85
4559 5050 8.966155 TTGTGGAGGACATATATATACAAGGA 57.034 34.615 0.00 0.00 33.40 3.36
4560 5051 8.595362 TGTGGAGGACATATATATACAAGGAG 57.405 38.462 0.00 0.00 0.00 3.69
4565 5070 7.199765 AGGACATATATATACAAGGAGGGCTT 58.800 38.462 0.00 0.00 0.00 4.35
4570 5075 2.355010 ATACAAGGAGGGCTTCATGC 57.645 50.000 0.00 0.00 41.94 4.06
4600 5105 4.214332 ACTGACTCGGCATTTTTCTTCTTC 59.786 41.667 0.00 0.00 0.00 2.87
4602 5107 4.821805 TGACTCGGCATTTTTCTTCTTCTT 59.178 37.500 0.00 0.00 0.00 2.52
4603 5108 5.049405 TGACTCGGCATTTTTCTTCTTCTTC 60.049 40.000 0.00 0.00 0.00 2.87
4606 5111 4.455877 TCGGCATTTTTCTTCTTCTTCTCC 59.544 41.667 0.00 0.00 0.00 3.71
4611 5116 3.320673 TTTCTTCTTCTTCTCCCTCGC 57.679 47.619 0.00 0.00 0.00 5.03
4675 5187 7.029563 TGATATGATGTGATGTATGTAGCGTC 58.970 38.462 0.00 0.00 0.00 5.19
4683 5195 2.495409 TATGTAGCGTCGGGGGCTG 61.495 63.158 6.12 0.00 41.69 4.85
4691 5222 2.122989 TCGGGGGCTGTAGGATCC 60.123 66.667 2.48 2.48 0.00 3.36
4696 5227 1.457831 GGGCTGTAGGATCCGGAGT 60.458 63.158 11.34 0.00 0.00 3.85
4703 5234 3.112263 TGTAGGATCCGGAGTTCCATTT 58.888 45.455 23.16 7.97 34.70 2.32
4711 5242 1.127951 CGGAGTTCCATTTTCGGTTCG 59.872 52.381 0.00 0.00 35.14 3.95
4745 5282 8.680903 GTCCTGTTTGTAGCACTAGTACTATAA 58.319 37.037 6.11 7.11 0.00 0.98
4752 5289 8.913487 TGTAGCACTAGTACTATAATGCAGTA 57.087 34.615 24.56 13.40 35.51 2.74
4766 5303 1.134699 TGCAGTACTGATGTAGCAGCC 60.135 52.381 27.08 5.03 39.51 4.85
4768 5305 2.801342 GCAGTACTGATGTAGCAGCCTC 60.801 54.545 27.08 0.00 39.51 4.70
4773 5310 0.684479 TGATGTAGCAGCCTCGAGGT 60.684 55.000 31.43 16.22 37.57 3.85
4797 5334 7.758528 GGTGAGTCGTTACTGAACAATAACTAT 59.241 37.037 5.01 0.00 35.56 2.12
4817 5354 4.691860 ATTGAGGATTTTGCTTGTCTCG 57.308 40.909 0.00 0.00 0.00 4.04
4826 5363 3.552604 TTGCTTGTCTCGGCATTTTAC 57.447 42.857 0.00 0.00 38.30 2.01
4835 5372 5.703592 TGTCTCGGCATTTTACACAGTTATT 59.296 36.000 0.00 0.00 0.00 1.40
4838 5375 9.037737 GTCTCGGCATTTTACACAGTTATTATA 57.962 33.333 0.00 0.00 0.00 0.98
4839 5376 9.037737 TCTCGGCATTTTACACAGTTATTATAC 57.962 33.333 0.00 0.00 0.00 1.47
4840 5377 8.145316 TCGGCATTTTACACAGTTATTATACC 57.855 34.615 0.00 0.00 0.00 2.73
4842 5379 8.564574 CGGCATTTTACACAGTTATTATACCAT 58.435 33.333 0.00 0.00 0.00 3.55
4843 5380 9.677567 GGCATTTTACACAGTTATTATACCATG 57.322 33.333 0.00 0.00 0.00 3.66
4844 5381 9.180678 GCATTTTACACAGTTATTATACCATGC 57.819 33.333 0.00 0.00 0.00 4.06
4850 5387 8.607441 ACACAGTTATTATACCATGCTATGTG 57.393 34.615 0.00 0.00 39.15 3.21
4851 5388 7.661437 ACACAGTTATTATACCATGCTATGTGG 59.339 37.037 0.00 0.00 42.55 4.17
4852 5389 6.655003 ACAGTTATTATACCATGCTATGTGGC 59.345 38.462 0.00 0.00 40.49 5.01
4853 5390 6.881065 CAGTTATTATACCATGCTATGTGGCT 59.119 38.462 0.00 0.00 40.49 4.75
4855 5392 4.972751 TTATACCATGCTATGTGGCTGA 57.027 40.909 0.00 0.00 40.49 4.26
4856 5393 3.862877 ATACCATGCTATGTGGCTGAA 57.137 42.857 0.00 0.00 40.49 3.02
4857 5394 1.755179 ACCATGCTATGTGGCTGAAC 58.245 50.000 0.00 0.00 40.49 3.18
4858 5395 1.027357 CCATGCTATGTGGCTGAACC 58.973 55.000 0.00 0.00 39.84 3.62
4859 5396 0.659427 CATGCTATGTGGCTGAACCG 59.341 55.000 0.00 0.00 43.94 4.44
4860 5397 0.464373 ATGCTATGTGGCTGAACCGG 60.464 55.000 0.00 0.00 43.94 5.28
4861 5398 2.472909 GCTATGTGGCTGAACCGGC 61.473 63.158 0.00 0.00 43.94 6.13
4862 5399 1.078497 CTATGTGGCTGAACCGGCA 60.078 57.895 0.00 0.00 43.94 5.69
4881 5418 1.589803 ACGTGCTGTGAACCCTAAAC 58.410 50.000 0.00 0.00 0.00 2.01
4882 5419 0.872388 CGTGCTGTGAACCCTAAACC 59.128 55.000 0.00 0.00 0.00 3.27
4883 5420 1.542547 CGTGCTGTGAACCCTAAACCT 60.543 52.381 0.00 0.00 0.00 3.50
4884 5421 2.583143 GTGCTGTGAACCCTAAACCTT 58.417 47.619 0.00 0.00 0.00 3.50
4885 5422 2.293399 GTGCTGTGAACCCTAAACCTTG 59.707 50.000 0.00 0.00 0.00 3.61
4886 5423 2.173782 TGCTGTGAACCCTAAACCTTGA 59.826 45.455 0.00 0.00 0.00 3.02
4887 5424 3.219281 GCTGTGAACCCTAAACCTTGAA 58.781 45.455 0.00 0.00 0.00 2.69
4888 5425 3.634910 GCTGTGAACCCTAAACCTTGAAA 59.365 43.478 0.00 0.00 0.00 2.69
4889 5426 4.098807 GCTGTGAACCCTAAACCTTGAAAA 59.901 41.667 0.00 0.00 0.00 2.29
4890 5427 5.394773 GCTGTGAACCCTAAACCTTGAAAAA 60.395 40.000 0.00 0.00 0.00 1.94
4891 5428 5.968254 TGTGAACCCTAAACCTTGAAAAAC 58.032 37.500 0.00 0.00 0.00 2.43
4892 5429 5.105269 TGTGAACCCTAAACCTTGAAAAACC 60.105 40.000 0.00 0.00 0.00 3.27
4893 5430 5.128171 GTGAACCCTAAACCTTGAAAAACCT 59.872 40.000 0.00 0.00 0.00 3.50
4894 5431 6.321945 GTGAACCCTAAACCTTGAAAAACCTA 59.678 38.462 0.00 0.00 0.00 3.08
4895 5432 6.548251 TGAACCCTAAACCTTGAAAAACCTAG 59.452 38.462 0.00 0.00 0.00 3.02
4896 5433 6.022107 ACCCTAAACCTTGAAAAACCTAGT 57.978 37.500 0.00 0.00 0.00 2.57
4897 5434 7.152942 ACCCTAAACCTTGAAAAACCTAGTA 57.847 36.000 0.00 0.00 0.00 1.82
4898 5435 7.000472 ACCCTAAACCTTGAAAAACCTAGTAC 59.000 38.462 0.00 0.00 0.00 2.73
4899 5436 7.147248 ACCCTAAACCTTGAAAAACCTAGTACT 60.147 37.037 0.00 0.00 0.00 2.73
4900 5437 7.722728 CCCTAAACCTTGAAAAACCTAGTACTT 59.277 37.037 0.00 0.00 0.00 2.24
4901 5438 8.565416 CCTAAACCTTGAAAAACCTAGTACTTG 58.435 37.037 0.00 0.00 0.00 3.16
4902 5439 6.387041 AACCTTGAAAAACCTAGTACTTGC 57.613 37.500 0.00 0.00 0.00 4.01
4903 5440 5.691896 ACCTTGAAAAACCTAGTACTTGCT 58.308 37.500 0.00 0.00 0.00 3.91
4904 5441 6.834107 ACCTTGAAAAACCTAGTACTTGCTA 58.166 36.000 0.00 0.00 0.00 3.49
4905 5442 6.935208 ACCTTGAAAAACCTAGTACTTGCTAG 59.065 38.462 0.00 0.00 38.46 3.42
4906 5443 6.128254 CCTTGAAAAACCTAGTACTTGCTAGC 60.128 42.308 8.10 8.10 37.66 3.42
4907 5444 5.860611 TGAAAAACCTAGTACTTGCTAGCA 58.139 37.500 14.93 14.93 37.66 3.49
4908 5445 6.292923 TGAAAAACCTAGTACTTGCTAGCAA 58.707 36.000 27.67 27.67 37.66 3.91
4909 5446 6.768861 TGAAAAACCTAGTACTTGCTAGCAAA 59.231 34.615 28.95 14.34 37.66 3.68
4910 5447 6.555812 AAAACCTAGTACTTGCTAGCAAAC 57.444 37.500 28.95 24.16 37.66 2.93
4911 5448 5.485209 AACCTAGTACTTGCTAGCAAACT 57.515 39.130 28.65 28.65 37.66 2.66
4912 5449 5.485209 ACCTAGTACTTGCTAGCAAACTT 57.515 39.130 30.07 20.35 37.66 2.66
4913 5450 5.866207 ACCTAGTACTTGCTAGCAAACTTT 58.134 37.500 30.07 19.39 37.66 2.66
4914 5451 6.296803 ACCTAGTACTTGCTAGCAAACTTTT 58.703 36.000 30.07 18.27 37.66 2.27
4915 5452 6.771267 ACCTAGTACTTGCTAGCAAACTTTTT 59.229 34.615 30.07 16.74 37.66 1.94
4916 5453 7.041303 ACCTAGTACTTGCTAGCAAACTTTTTC 60.041 37.037 30.07 17.17 37.66 2.29
4917 5454 6.944234 AGTACTTGCTAGCAAACTTTTTCT 57.056 33.333 28.95 16.85 35.33 2.52
4918 5455 7.334844 AGTACTTGCTAGCAAACTTTTTCTT 57.665 32.000 28.95 6.83 35.33 2.52
4919 5456 7.772166 AGTACTTGCTAGCAAACTTTTTCTTT 58.228 30.769 28.95 6.17 35.33 2.52
4920 5457 7.915923 AGTACTTGCTAGCAAACTTTTTCTTTC 59.084 33.333 28.95 10.21 35.33 2.62
4921 5458 6.867550 ACTTGCTAGCAAACTTTTTCTTTCT 58.132 32.000 28.95 0.00 35.33 2.52
4922 5459 6.975197 ACTTGCTAGCAAACTTTTTCTTTCTC 59.025 34.615 28.95 0.00 35.33 2.87
4923 5460 5.510671 TGCTAGCAAACTTTTTCTTTCTCG 58.489 37.500 16.84 0.00 0.00 4.04
4924 5461 5.295787 TGCTAGCAAACTTTTTCTTTCTCGA 59.704 36.000 16.84 0.00 0.00 4.04
4925 5462 6.183360 TGCTAGCAAACTTTTTCTTTCTCGAA 60.183 34.615 16.84 0.00 0.00 3.71
4926 5463 6.858478 GCTAGCAAACTTTTTCTTTCTCGAAT 59.142 34.615 10.63 0.00 0.00 3.34
4927 5464 8.015658 GCTAGCAAACTTTTTCTTTCTCGAATA 58.984 33.333 10.63 0.00 0.00 1.75
4928 5465 9.319223 CTAGCAAACTTTTTCTTTCTCGAATAC 57.681 33.333 0.00 0.00 0.00 1.89
4929 5466 6.851330 AGCAAACTTTTTCTTTCTCGAATACG 59.149 34.615 0.00 0.00 41.26 3.06
4930 5467 6.397584 GCAAACTTTTTCTTTCTCGAATACGC 60.398 38.462 0.00 0.00 39.58 4.42
4931 5468 6.541111 AACTTTTTCTTTCTCGAATACGCT 57.459 33.333 0.00 0.00 39.58 5.07
4932 5469 7.647907 AACTTTTTCTTTCTCGAATACGCTA 57.352 32.000 0.00 0.00 39.58 4.26
4933 5470 7.647907 ACTTTTTCTTTCTCGAATACGCTAA 57.352 32.000 0.00 0.00 39.58 3.09
4934 5471 7.730778 ACTTTTTCTTTCTCGAATACGCTAAG 58.269 34.615 0.00 0.00 39.58 2.18
4935 5472 5.697848 TTTCTTTCTCGAATACGCTAAGC 57.302 39.130 0.00 0.00 39.58 3.09
4936 5473 4.634184 TCTTTCTCGAATACGCTAAGCT 57.366 40.909 0.00 0.00 39.58 3.74
4937 5474 5.746307 TCTTTCTCGAATACGCTAAGCTA 57.254 39.130 0.00 0.00 39.58 3.32
4938 5475 5.749620 TCTTTCTCGAATACGCTAAGCTAG 58.250 41.667 0.00 0.00 39.58 3.42
4949 5486 3.713889 GCTAAGCTAGCGTATCATTGC 57.286 47.619 10.90 6.93 42.62 3.56
4950 5487 3.059884 GCTAAGCTAGCGTATCATTGCA 58.940 45.455 10.90 0.00 42.62 4.08
4951 5488 3.681897 GCTAAGCTAGCGTATCATTGCAT 59.318 43.478 10.90 0.00 42.62 3.96
4952 5489 4.153117 GCTAAGCTAGCGTATCATTGCATT 59.847 41.667 10.90 0.00 42.62 3.56
4953 5490 4.478843 AAGCTAGCGTATCATTGCATTG 57.521 40.909 9.55 2.08 0.00 2.82
4954 5491 3.732212 AGCTAGCGTATCATTGCATTGA 58.268 40.909 13.30 13.30 0.00 2.57
4955 5492 4.321718 AGCTAGCGTATCATTGCATTGAT 58.678 39.130 23.42 23.42 39.60 2.57
4956 5493 5.482006 AGCTAGCGTATCATTGCATTGATA 58.518 37.500 21.66 21.66 37.51 2.15
4957 5494 5.579904 AGCTAGCGTATCATTGCATTGATAG 59.420 40.000 24.60 19.64 38.83 2.08
4958 5495 5.578336 GCTAGCGTATCATTGCATTGATAGA 59.422 40.000 24.60 9.88 38.83 1.98
4959 5496 6.091305 GCTAGCGTATCATTGCATTGATAGAA 59.909 38.462 24.60 9.27 38.83 2.10
4960 5497 6.477669 AGCGTATCATTGCATTGATAGAAG 57.522 37.500 24.60 19.93 38.83 2.85
4961 5498 5.410746 AGCGTATCATTGCATTGATAGAAGG 59.589 40.000 24.60 15.64 38.83 3.46
4962 5499 5.409520 GCGTATCATTGCATTGATAGAAGGA 59.590 40.000 24.60 8.06 38.83 3.36
4963 5500 6.401903 GCGTATCATTGCATTGATAGAAGGAG 60.402 42.308 24.60 15.25 38.83 3.69
4964 5501 6.870439 CGTATCATTGCATTGATAGAAGGAGA 59.130 38.462 24.60 6.86 38.83 3.71
4965 5502 7.063191 CGTATCATTGCATTGATAGAAGGAGAG 59.937 40.741 24.60 10.16 38.83 3.20
4966 5503 6.490241 TCATTGCATTGATAGAAGGAGAGA 57.510 37.500 7.19 0.00 0.00 3.10
4967 5504 6.892485 TCATTGCATTGATAGAAGGAGAGAA 58.108 36.000 7.19 0.00 0.00 2.87
4968 5505 6.765036 TCATTGCATTGATAGAAGGAGAGAAC 59.235 38.462 7.19 0.00 0.00 3.01
4969 5506 5.682234 TGCATTGATAGAAGGAGAGAACA 57.318 39.130 0.00 0.00 0.00 3.18
4970 5507 6.053632 TGCATTGATAGAAGGAGAGAACAA 57.946 37.500 0.00 0.00 0.00 2.83
4971 5508 6.475504 TGCATTGATAGAAGGAGAGAACAAA 58.524 36.000 0.00 0.00 0.00 2.83
4972 5509 6.596888 TGCATTGATAGAAGGAGAGAACAAAG 59.403 38.462 0.00 0.00 0.00 2.77
4973 5510 6.597280 GCATTGATAGAAGGAGAGAACAAAGT 59.403 38.462 0.00 0.00 0.00 2.66
4974 5511 7.766278 GCATTGATAGAAGGAGAGAACAAAGTA 59.234 37.037 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.057806 GGTCATCGAAACCCGTCAAATTT 60.058 43.478 8.76 0.00 39.75 1.82
20 21 3.781307 CTTGGGGGCGGTCATCGA 61.781 66.667 0.00 0.00 42.43 3.59
115 116 0.463833 GCCGTGATTCCACTAAGGGG 60.464 60.000 0.00 0.00 41.06 4.79
517 520 3.093814 TCTTTACGTACAGGAGCATGGA 58.906 45.455 8.80 0.00 0.00 3.41
531 534 6.795399 ACCAAAATGCCTAATGATCTTTACG 58.205 36.000 0.00 0.00 0.00 3.18
532 535 8.000780 AGACCAAAATGCCTAATGATCTTTAC 57.999 34.615 0.00 0.00 0.00 2.01
533 536 7.012327 CGAGACCAAAATGCCTAATGATCTTTA 59.988 37.037 0.00 0.00 0.00 1.85
534 537 6.183360 CGAGACCAAAATGCCTAATGATCTTT 60.183 38.462 0.00 0.00 0.00 2.52
539 542 3.054728 TCCGAGACCAAAATGCCTAATGA 60.055 43.478 0.00 0.00 0.00 2.57
645 648 9.852091 GCTTCTTCATGAATGAAAAGAACTAAT 57.148 29.630 8.96 0.00 45.26 1.73
646 649 8.017373 CGCTTCTTCATGAATGAAAAGAACTAA 58.983 33.333 8.96 0.00 45.26 2.24
647 650 7.387673 TCGCTTCTTCATGAATGAAAAGAACTA 59.612 33.333 8.96 0.00 45.26 2.24
648 651 6.205464 TCGCTTCTTCATGAATGAAAAGAACT 59.795 34.615 8.96 0.00 45.26 3.01
649 652 6.373779 TCGCTTCTTCATGAATGAAAAGAAC 58.626 36.000 8.96 2.74 45.26 3.01
650 653 6.558771 TCGCTTCTTCATGAATGAAAAGAA 57.441 33.333 8.96 6.84 45.26 2.52
651 654 6.748333 ATCGCTTCTTCATGAATGAAAAGA 57.252 33.333 8.96 14.53 45.26 2.52
652 655 7.025365 TCAATCGCTTCTTCATGAATGAAAAG 58.975 34.615 8.96 11.12 45.26 2.27
653 656 6.912082 TCAATCGCTTCTTCATGAATGAAAA 58.088 32.000 8.96 1.11 45.26 2.29
654 657 6.149973 ACTCAATCGCTTCTTCATGAATGAAA 59.850 34.615 8.96 3.52 45.26 2.69
663 666 1.442769 GGCACTCAATCGCTTCTTCA 58.557 50.000 0.00 0.00 0.00 3.02
929 949 4.075793 CGGTGGAGGAGGAGGGGA 62.076 72.222 0.00 0.00 0.00 4.81
974 994 4.565850 GGAGGCGGATCTCCCCCT 62.566 72.222 1.94 1.94 45.75 4.79
1318 1383 3.759086 GGAACCAAATCTGGAGAAAGACC 59.241 47.826 0.00 0.00 46.92 3.85
1371 1442 1.733399 GACAACAGAGACGACCGCC 60.733 63.158 0.00 0.00 0.00 6.13
1372 1443 2.081212 CGACAACAGAGACGACCGC 61.081 63.158 0.00 0.00 0.00 5.68
1485 1556 2.046507 GAGTGGGCAGGAGCAGTG 60.047 66.667 0.00 0.00 44.61 3.66
1492 1563 4.106925 GGAGGCAGAGTGGGCAGG 62.107 72.222 0.00 0.00 35.46 4.85
1520 1591 2.872557 CGGCAGCAGTGATTGTGG 59.127 61.111 0.00 0.00 0.00 4.17
1614 1690 1.541310 GGCGATACGGGATGGATGGA 61.541 60.000 0.00 0.00 0.00 3.41
1615 1691 1.079127 GGCGATACGGGATGGATGG 60.079 63.158 0.00 0.00 0.00 3.51
1616 1692 0.108615 GAGGCGATACGGGATGGATG 60.109 60.000 0.00 0.00 0.00 3.51
1617 1693 0.541998 TGAGGCGATACGGGATGGAT 60.542 55.000 0.00 0.00 0.00 3.41
1647 1723 3.395671 CGAAAAGCACAGACGTAATTCG 58.604 45.455 0.00 0.00 46.00 3.34
1741 1818 2.294233 CAGTCACTGTCAACCCCATTTG 59.706 50.000 0.00 0.00 0.00 2.32
1804 1890 0.107312 CAGTCCAGCCAAGATCCCAG 60.107 60.000 0.00 0.00 0.00 4.45
1844 1944 2.519377 TCACACTACAACCGTTCCTG 57.481 50.000 0.00 0.00 0.00 3.86
1850 1950 2.400399 ACACGAATCACACTACAACCG 58.600 47.619 0.00 0.00 0.00 4.44
1858 1958 2.080286 AGCCAGTACACGAATCACAC 57.920 50.000 0.00 0.00 0.00 3.82
1859 1959 2.831685 AAGCCAGTACACGAATCACA 57.168 45.000 0.00 0.00 0.00 3.58
1869 1969 3.665190 ACAGCAGAACTAAAGCCAGTAC 58.335 45.455 0.00 0.00 0.00 2.73
1889 1989 0.818296 ATACACGGAGCTCCACTGAC 59.182 55.000 31.67 4.38 35.14 3.51
1980 2080 6.493449 TTTATCATGTTTGCAGATTCGACA 57.507 33.333 0.00 0.00 0.00 4.35
2043 2158 4.094442 GGAAACAGAAACCCATACATCGTC 59.906 45.833 0.00 0.00 0.00 4.20
2044 2159 4.007659 GGAAACAGAAACCCATACATCGT 58.992 43.478 0.00 0.00 0.00 3.73
2045 2160 4.261801 AGGAAACAGAAACCCATACATCG 58.738 43.478 0.00 0.00 0.00 3.84
2054 2169 5.854010 AGGAAGAAAAGGAAACAGAAACC 57.146 39.130 0.00 0.00 0.00 3.27
2071 2186 1.005215 ACAGCCAAGATCCCAAGGAAG 59.995 52.381 0.00 0.00 34.34 3.46
2101 2216 2.159338 CGTTTCATTCCAGGAGGCAATG 60.159 50.000 0.00 0.00 33.74 2.82
2151 2274 0.183492 AGAGCACCACTGAAGGCAAA 59.817 50.000 0.00 0.00 0.00 3.68
2165 2288 4.623932 AGAATCCAGTGTAAACAGAGCA 57.376 40.909 0.00 0.00 0.00 4.26
2171 2294 7.331791 AGATCAGGTAAGAATCCAGTGTAAAC 58.668 38.462 0.00 0.00 0.00 2.01
2190 2313 5.365025 TCCCCATTTCTTCAGAGTAGATCAG 59.635 44.000 0.00 0.00 0.00 2.90
2208 2331 3.588842 CACTATACATCCCACATCCCCAT 59.411 47.826 0.00 0.00 0.00 4.00
2212 2335 2.299013 TCGCACTATACATCCCACATCC 59.701 50.000 0.00 0.00 0.00 3.51
2213 2336 3.660501 TCGCACTATACATCCCACATC 57.339 47.619 0.00 0.00 0.00 3.06
2214 2337 3.388024 AGTTCGCACTATACATCCCACAT 59.612 43.478 0.00 0.00 0.00 3.21
2215 2338 2.764010 AGTTCGCACTATACATCCCACA 59.236 45.455 0.00 0.00 0.00 4.17
2216 2339 3.454371 AGTTCGCACTATACATCCCAC 57.546 47.619 0.00 0.00 0.00 4.61
2217 2340 4.212716 ACTAGTTCGCACTATACATCCCA 58.787 43.478 0.00 0.00 34.83 4.37
2218 2341 4.850347 ACTAGTTCGCACTATACATCCC 57.150 45.455 0.00 0.00 34.83 3.85
2226 2349 2.600420 CGACGAGTACTAGTTCGCACTA 59.400 50.000 15.22 0.00 40.32 2.74
2228 2351 1.391485 TCGACGAGTACTAGTTCGCAC 59.609 52.381 15.22 9.71 40.32 5.34
2231 2354 5.193936 GGTAATTCGACGAGTACTAGTTCG 58.806 45.833 14.00 14.00 42.26 3.95
2315 2457 1.693606 TGCATGTGAGTCTTCTGTCCA 59.306 47.619 0.00 0.00 0.00 4.02
2317 2459 3.593096 TGATGCATGTGAGTCTTCTGTC 58.407 45.455 2.46 0.00 0.00 3.51
2344 2486 9.609950 GCGGTAATGTGTAGTACAAATTTTAAA 57.390 29.630 21.14 3.59 43.77 1.52
2349 2491 5.935789 AGTGCGGTAATGTGTAGTACAAATT 59.064 36.000 20.08 20.08 43.77 1.82
2357 2499 3.367932 CAGTGAAGTGCGGTAATGTGTAG 59.632 47.826 0.00 0.00 0.00 2.74
2370 2512 6.591448 TCATAGAAATACTGTGCAGTGAAGTG 59.409 38.462 14.44 5.25 42.52 3.16
2389 2531 7.255242 GCATAAGGCATTTGCTTAGTTCATAGA 60.255 37.037 9.84 0.00 43.97 1.98
2439 2581 6.212791 AGGAGGCTTACTTACAAGATACACAA 59.787 38.462 0.00 0.00 0.00 3.33
2542 2684 6.760298 CAGAAGTCTGAACACATATGTATGCT 59.240 38.462 8.32 0.00 46.59 3.79
2569 2711 9.471084 CAAAAATGGTAAGTAAACACCCTAAAG 57.529 33.333 0.00 0.00 33.61 1.85
2650 2792 7.775561 ACCTTAAACCCATTACATTTGCAAAAA 59.224 29.630 17.19 6.60 0.00 1.94
2651 2793 7.283329 ACCTTAAACCCATTACATTTGCAAAA 58.717 30.769 17.19 0.00 0.00 2.44
2652 2794 6.831976 ACCTTAAACCCATTACATTTGCAAA 58.168 32.000 15.44 15.44 0.00 3.68
2653 2795 6.426646 ACCTTAAACCCATTACATTTGCAA 57.573 33.333 0.00 0.00 0.00 4.08
2654 2796 7.726033 ATACCTTAAACCCATTACATTTGCA 57.274 32.000 0.00 0.00 0.00 4.08
2655 2797 9.093970 GAAATACCTTAAACCCATTACATTTGC 57.906 33.333 0.00 0.00 0.00 3.68
2656 2798 9.594478 GGAAATACCTTAAACCCATTACATTTG 57.406 33.333 0.00 0.00 35.41 2.32
2657 2799 9.327731 TGGAAATACCTTAAACCCATTACATTT 57.672 29.630 0.00 0.00 39.86 2.32
2658 2800 8.903059 TGGAAATACCTTAAACCCATTACATT 57.097 30.769 0.00 0.00 39.86 2.71
2659 2801 9.500701 AATGGAAATACCTTAAACCCATTACAT 57.499 29.630 0.00 0.00 40.07 2.29
2660 2802 8.754080 CAATGGAAATACCTTAAACCCATTACA 58.246 33.333 0.00 0.00 39.92 2.41
2661 2803 7.709182 GCAATGGAAATACCTTAAACCCATTAC 59.291 37.037 0.00 0.00 39.92 1.89
2662 2804 7.621683 AGCAATGGAAATACCTTAAACCCATTA 59.378 33.333 0.00 0.00 39.92 1.90
2663 2805 6.443527 AGCAATGGAAATACCTTAAACCCATT 59.556 34.615 0.00 0.00 41.86 3.16
2664 2806 5.963865 AGCAATGGAAATACCTTAAACCCAT 59.036 36.000 0.00 0.00 39.86 4.00
2665 2807 5.337788 AGCAATGGAAATACCTTAAACCCA 58.662 37.500 0.00 0.00 39.86 4.51
2666 2808 5.932619 AGCAATGGAAATACCTTAAACCC 57.067 39.130 0.00 0.00 39.86 4.11
2667 2809 6.697395 ACAAGCAATGGAAATACCTTAAACC 58.303 36.000 0.00 0.00 39.86 3.27
2668 2810 9.353999 CTAACAAGCAATGGAAATACCTTAAAC 57.646 33.333 0.00 0.00 39.86 2.01
2669 2811 9.084533 ACTAACAAGCAATGGAAATACCTTAAA 57.915 29.630 0.00 0.00 39.86 1.52
2670 2812 8.644374 ACTAACAAGCAATGGAAATACCTTAA 57.356 30.769 0.00 0.00 39.86 1.85
2681 2823 4.232221 CAAGCTGAACTAACAAGCAATGG 58.768 43.478 0.00 0.00 0.00 3.16
2714 2856 7.496591 GCCATCAATCAAACATGGTAAAATCAT 59.503 33.333 0.00 0.00 39.55 2.45
2724 2866 4.182693 ACACAGCCATCAATCAAACATG 57.817 40.909 0.00 0.00 0.00 3.21
2764 2908 8.311836 CCAATTAAGTACTCACACTCTTCCTTA 58.688 37.037 0.00 0.00 0.00 2.69
2800 2944 0.810648 TTGATTTCACCATGCGAGGC 59.189 50.000 0.00 0.00 0.00 4.70
2896 3040 1.523032 CCGGATAACCTTGTCCCGC 60.523 63.158 0.00 0.00 38.92 6.13
3030 3174 9.774742 CTTGTCTGTATGCCTTAATTTTACTTC 57.225 33.333 0.00 0.00 0.00 3.01
3072 3221 8.671921 CACATATAACCATCAGATTTCCTATGC 58.328 37.037 0.00 0.00 0.00 3.14
3105 3257 5.247792 ACCATAACTAAGAACGAGGGAGTTT 59.752 40.000 0.00 0.00 34.00 2.66
3134 3287 7.172532 CACCACTTGTATACTGAACAAAGCTAA 59.827 37.037 4.17 0.00 36.46 3.09
3487 3642 3.855255 TCAACATCTGACCTGTTCCAA 57.145 42.857 0.00 0.00 34.69 3.53
3556 3711 3.017265 AGTTCGTTGTACCACGGTAAG 57.983 47.619 18.22 0.00 40.74 2.34
3562 3717 4.025979 CACTCTGAAAGTTCGTTGTACCAC 60.026 45.833 0.00 0.00 35.45 4.16
3729 3888 7.228308 AGGTCTCATAAATATTCTGCTTTCTGC 59.772 37.037 0.00 0.00 43.25 4.26
3730 3889 8.557864 CAGGTCTCATAAATATTCTGCTTTCTG 58.442 37.037 0.00 0.00 0.00 3.02
3731 3890 8.489489 TCAGGTCTCATAAATATTCTGCTTTCT 58.511 33.333 0.00 0.00 0.00 2.52
3732 3891 8.668510 TCAGGTCTCATAAATATTCTGCTTTC 57.331 34.615 0.00 0.00 0.00 2.62
3733 3892 9.638176 AATCAGGTCTCATAAATATTCTGCTTT 57.362 29.630 0.00 0.00 0.00 3.51
3734 3893 9.638176 AAATCAGGTCTCATAAATATTCTGCTT 57.362 29.630 0.00 0.00 0.00 3.91
3744 3903 9.793259 GGTCCAATATAAATCAGGTCTCATAAA 57.207 33.333 0.00 0.00 0.00 1.40
3745 3904 9.170890 AGGTCCAATATAAATCAGGTCTCATAA 57.829 33.333 0.00 0.00 0.00 1.90
3746 3905 8.742125 AGGTCCAATATAAATCAGGTCTCATA 57.258 34.615 0.00 0.00 0.00 2.15
3747 3906 7.639062 AGGTCCAATATAAATCAGGTCTCAT 57.361 36.000 0.00 0.00 0.00 2.90
3748 3907 7.451731 AAGGTCCAATATAAATCAGGTCTCA 57.548 36.000 0.00 0.00 0.00 3.27
3749 3908 7.993183 TGAAAGGTCCAATATAAATCAGGTCTC 59.007 37.037 0.00 0.00 0.00 3.36
3750 3909 7.775561 GTGAAAGGTCCAATATAAATCAGGTCT 59.224 37.037 0.00 0.00 0.00 3.85
3751 3910 7.775561 AGTGAAAGGTCCAATATAAATCAGGTC 59.224 37.037 0.00 0.00 0.00 3.85
3752 3911 7.643123 AGTGAAAGGTCCAATATAAATCAGGT 58.357 34.615 0.00 0.00 0.00 4.00
3753 3912 8.525290 AAGTGAAAGGTCCAATATAAATCAGG 57.475 34.615 0.00 0.00 0.00 3.86
3754 3913 9.401058 AGAAGTGAAAGGTCCAATATAAATCAG 57.599 33.333 0.00 0.00 0.00 2.90
3755 3914 9.177608 CAGAAGTGAAAGGTCCAATATAAATCA 57.822 33.333 0.00 0.00 0.00 2.57
3756 3915 9.396022 TCAGAAGTGAAAGGTCCAATATAAATC 57.604 33.333 0.00 0.00 0.00 2.17
3757 3916 9.753674 TTCAGAAGTGAAAGGTCCAATATAAAT 57.246 29.630 0.00 0.00 39.85 1.40
3758 3917 9.581289 TTTCAGAAGTGAAAGGTCCAATATAAA 57.419 29.630 0.00 0.00 45.82 1.40
3769 3928 8.757495 TGGAACAAGAGTTTCAGAAGTGAAAGG 61.757 40.741 0.82 0.00 44.41 3.11
3770 3929 6.094048 TGGAACAAGAGTTTCAGAAGTGAAAG 59.906 38.462 0.82 0.00 44.41 2.62
3771 3930 5.943416 TGGAACAAGAGTTTCAGAAGTGAAA 59.057 36.000 0.00 0.00 42.67 2.69
3772 3931 5.496556 TGGAACAAGAGTTTCAGAAGTGAA 58.503 37.500 0.00 0.00 38.32 3.18
3773 3932 5.097742 TGGAACAAGAGTTTCAGAAGTGA 57.902 39.130 0.00 0.00 38.32 3.41
3774 3933 6.261826 AGAATGGAACAAGAGTTTCAGAAGTG 59.738 38.462 0.00 0.00 46.04 3.16
3775 3934 6.360618 AGAATGGAACAAGAGTTTCAGAAGT 58.639 36.000 0.00 0.00 46.04 3.01
3815 3974 4.399303 AGCACAACTTCAAGTTTAACAGCT 59.601 37.500 0.00 3.23 36.03 4.24
3885 4147 1.478105 GCCCCCTGCAAGAATAACAAG 59.522 52.381 0.00 0.00 40.77 3.16
3886 4148 1.077005 AGCCCCCTGCAAGAATAACAA 59.923 47.619 0.00 0.00 44.83 2.83
3971 4233 3.266772 TGGAATGAGTTCACAAGGCCTAT 59.733 43.478 5.16 0.00 36.01 2.57
4148 4414 1.139853 GCTGAGGATGGACTAACTGGG 59.860 57.143 0.00 0.00 0.00 4.45
4149 4415 1.833630 TGCTGAGGATGGACTAACTGG 59.166 52.381 0.00 0.00 0.00 4.00
4151 4417 1.834263 GGTGCTGAGGATGGACTAACT 59.166 52.381 0.00 0.00 0.00 2.24
4178 4637 3.853355 AGGAGTAATTGCAGATGGAGG 57.147 47.619 0.00 0.00 0.00 4.30
4211 4677 4.336280 TGCTGCGGAGTAGAGACATATAT 58.664 43.478 5.62 0.00 45.23 0.86
4212 4678 3.751518 TGCTGCGGAGTAGAGACATATA 58.248 45.455 5.62 0.00 45.23 0.86
4213 4679 2.587522 TGCTGCGGAGTAGAGACATAT 58.412 47.619 5.62 0.00 45.23 1.78
4221 4688 2.744202 ACTTCAATTTGCTGCGGAGTAG 59.256 45.455 5.62 0.00 45.17 2.57
4227 4694 2.228822 AGGGTAACTTCAATTTGCTGCG 59.771 45.455 0.00 0.00 0.00 5.18
4241 4708 7.418337 AATCAAAATGTATGGGAAGGGTAAC 57.582 36.000 0.00 0.00 0.00 2.50
4245 4712 6.978080 CGTAAAATCAAAATGTATGGGAAGGG 59.022 38.462 0.00 0.00 0.00 3.95
4246 4713 7.767261 TCGTAAAATCAAAATGTATGGGAAGG 58.233 34.615 0.00 0.00 0.00 3.46
4247 4714 9.801873 AATCGTAAAATCAAAATGTATGGGAAG 57.198 29.630 0.00 0.00 0.00 3.46
4248 4715 9.579768 CAATCGTAAAATCAAAATGTATGGGAA 57.420 29.630 0.00 0.00 0.00 3.97
4249 4716 7.704472 GCAATCGTAAAATCAAAATGTATGGGA 59.296 33.333 0.00 0.00 0.00 4.37
4250 4717 7.706179 AGCAATCGTAAAATCAAAATGTATGGG 59.294 33.333 0.00 0.00 0.00 4.00
4251 4718 8.633075 AGCAATCGTAAAATCAAAATGTATGG 57.367 30.769 0.00 0.00 0.00 2.74
4255 4722 9.128107 CACTTAGCAATCGTAAAATCAAAATGT 57.872 29.630 0.00 0.00 0.00 2.71
4256 4723 9.128107 ACACTTAGCAATCGTAAAATCAAAATG 57.872 29.630 0.00 0.00 0.00 2.32
4257 4724 9.128107 CACACTTAGCAATCGTAAAATCAAAAT 57.872 29.630 0.00 0.00 0.00 1.82
4258 4725 8.346300 TCACACTTAGCAATCGTAAAATCAAAA 58.654 29.630 0.00 0.00 0.00 2.44
4259 4726 7.801315 GTCACACTTAGCAATCGTAAAATCAAA 59.199 33.333 0.00 0.00 0.00 2.69
4260 4727 7.172532 AGTCACACTTAGCAATCGTAAAATCAA 59.827 33.333 0.00 0.00 0.00 2.57
4261 4728 6.649141 AGTCACACTTAGCAATCGTAAAATCA 59.351 34.615 0.00 0.00 0.00 2.57
4264 4731 5.756347 ACAGTCACACTTAGCAATCGTAAAA 59.244 36.000 0.00 0.00 0.00 1.52
4322 4789 3.565307 GCCTCATCCCAACCATCATTTA 58.435 45.455 0.00 0.00 0.00 1.40
4345 4812 4.873259 GCACAAACAAAGGTAACCATGTTT 59.127 37.500 10.09 10.09 42.34 2.83
4352 4819 3.115554 CAGCAGCACAAACAAAGGTAAC 58.884 45.455 0.00 0.00 0.00 2.50
4361 4828 0.890996 AGCCTACCAGCAGCACAAAC 60.891 55.000 0.00 0.00 34.23 2.93
4375 4842 1.871418 ACCTGAGATGCTCAAGCCTA 58.129 50.000 0.00 0.00 40.18 3.93
4378 4845 2.157738 ACAAACCTGAGATGCTCAAGC 58.842 47.619 0.00 0.00 40.18 4.01
4396 4865 5.669164 AAAGAGTTTACTTTTGGGCAACA 57.331 34.783 0.00 0.00 36.84 3.33
4397 4866 6.200286 GCTTAAAGAGTTTACTTTTGGGCAAC 59.800 38.462 0.00 0.00 40.09 4.17
4398 4867 6.097696 AGCTTAAAGAGTTTACTTTTGGGCAA 59.902 34.615 0.00 0.00 40.09 4.52
4402 4871 7.327032 GCATCAGCTTAAAGAGTTTACTTTTGG 59.673 37.037 0.00 0.00 38.16 3.28
4410 4879 4.457257 GTCTGGCATCAGCTTAAAGAGTTT 59.543 41.667 0.00 0.00 40.69 2.66
4419 4888 1.065854 GTGGTAGTCTGGCATCAGCTT 60.066 52.381 0.00 0.00 40.69 3.74
4420 4889 0.539051 GTGGTAGTCTGGCATCAGCT 59.461 55.000 0.00 0.00 40.69 4.24
4463 4939 1.748122 GCCCAGGTCACATGCTCAG 60.748 63.158 0.00 0.00 0.00 3.35
4475 4954 2.579873 CCATCATGTAAAGAGCCCAGG 58.420 52.381 0.00 0.00 0.00 4.45
4490 4969 5.045942 TGGATCTGTAACTGTAAAGCCATCA 60.046 40.000 0.00 0.00 0.00 3.07
4517 4996 3.061322 CACAAGCAATGAACACAATGGG 58.939 45.455 0.00 0.00 0.00 4.00
4520 4999 3.006110 CCTCCACAAGCAATGAACACAAT 59.994 43.478 0.00 0.00 0.00 2.71
4527 5009 2.885135 ATGTCCTCCACAAGCAATGA 57.115 45.000 0.00 0.00 38.97 2.57
4544 5026 7.443575 GCATGAAGCCCTCCTTGTATATATATG 59.556 40.741 5.44 0.00 37.23 1.78
4565 5070 2.101415 CCGAGTCAGTATTCCAGCATGA 59.899 50.000 0.00 0.00 39.69 3.07
4570 5075 2.898729 ATGCCGAGTCAGTATTCCAG 57.101 50.000 0.00 0.00 0.00 3.86
4600 5105 3.764466 ACTGCGGCGAGGGAGAAG 61.764 66.667 12.98 0.00 0.00 2.85
4656 5168 2.980476 CCGACGCTACATACATCACATC 59.020 50.000 0.00 0.00 0.00 3.06
4657 5169 2.288213 CCCGACGCTACATACATCACAT 60.288 50.000 0.00 0.00 0.00 3.21
4658 5170 1.066454 CCCGACGCTACATACATCACA 59.934 52.381 0.00 0.00 0.00 3.58
4672 5184 2.838225 ATCCTACAGCCCCCGACG 60.838 66.667 0.00 0.00 0.00 5.12
4675 5187 3.616721 CGGATCCTACAGCCCCCG 61.617 72.222 10.75 0.00 0.00 5.73
4683 5195 3.840124 AAATGGAACTCCGGATCCTAC 57.160 47.619 21.93 4.47 39.43 3.18
4691 5222 1.127951 CGAACCGAAAATGGAACTCCG 59.872 52.381 0.00 0.00 39.43 4.63
4696 5227 3.207778 AGAACACGAACCGAAAATGGAA 58.792 40.909 0.00 0.00 0.00 3.53
4703 5234 1.137479 AGGACAAGAACACGAACCGAA 59.863 47.619 0.00 0.00 0.00 4.30
4711 5242 3.625764 TGCTACAAACAGGACAAGAACAC 59.374 43.478 0.00 0.00 0.00 3.32
4745 5282 2.484417 GGCTGCTACATCAGTACTGCAT 60.484 50.000 18.45 9.64 32.89 3.96
4752 5289 0.743688 CTCGAGGCTGCTACATCAGT 59.256 55.000 3.91 0.00 36.49 3.41
4766 5303 6.088837 TGTTCAGTAACGACTCACCTCGAG 62.089 50.000 5.13 5.13 42.08 4.04
4768 5305 2.031420 TGTTCAGTAACGACTCACCTCG 60.031 50.000 0.00 0.00 38.53 4.63
4773 5310 9.135843 CAATAGTTATTGTTCAGTAACGACTCA 57.864 33.333 10.79 0.42 38.53 3.41
4778 5315 8.697846 TCCTCAATAGTTATTGTTCAGTAACG 57.302 34.615 10.69 0.00 42.70 3.18
4797 5334 2.813754 CCGAGACAAGCAAAATCCTCAA 59.186 45.455 0.00 0.00 0.00 3.02
4817 5354 9.677567 CATGGTATAATAACTGTGTAAAATGCC 57.322 33.333 0.00 0.00 0.00 4.40
4826 5363 7.361201 GCCACATAGCATGGTATAATAACTGTG 60.361 40.741 16.69 17.95 39.63 3.66
4835 5372 4.504864 GGTTCAGCCACATAGCATGGTATA 60.505 45.833 16.69 0.00 39.63 1.47
4838 5375 1.683011 GGTTCAGCCACATAGCATGGT 60.683 52.381 1.62 1.62 39.63 3.55
4839 5376 1.027357 GGTTCAGCCACATAGCATGG 58.973 55.000 0.00 0.00 40.50 3.66
4840 5377 0.659427 CGGTTCAGCCACATAGCATG 59.341 55.000 0.00 0.00 36.97 4.06
4842 5379 1.078497 CCGGTTCAGCCACATAGCA 60.078 57.895 0.00 0.00 36.97 3.49
4843 5380 2.472909 GCCGGTTCAGCCACATAGC 61.473 63.158 1.90 0.00 36.97 2.97
4844 5381 1.078497 TGCCGGTTCAGCCACATAG 60.078 57.895 1.90 0.00 36.97 2.23
4845 5382 1.376683 GTGCCGGTTCAGCCACATA 60.377 57.895 1.90 0.00 36.97 2.29
4846 5383 2.672996 GTGCCGGTTCAGCCACAT 60.673 61.111 1.90 0.00 36.97 3.21
4852 5389 3.716006 CAGCACGTGCCGGTTCAG 61.716 66.667 35.51 13.72 43.38 3.02
4853 5390 4.539083 ACAGCACGTGCCGGTTCA 62.539 61.111 35.51 0.00 43.38 3.18
4855 5392 4.539083 TCACAGCACGTGCCGGTT 62.539 61.111 35.51 15.90 45.92 4.44
4856 5393 4.539083 TTCACAGCACGTGCCGGT 62.539 61.111 35.51 29.59 45.92 5.28
4857 5394 4.012895 GTTCACAGCACGTGCCGG 62.013 66.667 35.51 28.93 45.92 6.13
4858 5395 4.012895 GGTTCACAGCACGTGCCG 62.013 66.667 35.51 28.74 45.92 5.69
4859 5396 2.725203 TAGGGTTCACAGCACGTGCC 62.725 60.000 35.51 19.38 45.92 5.01
4860 5397 0.882927 TTAGGGTTCACAGCACGTGC 60.883 55.000 32.79 32.79 45.92 5.34
4862 5399 1.589803 GTTTAGGGTTCACAGCACGT 58.410 50.000 0.00 0.00 0.00 4.49
4863 5400 0.872388 GGTTTAGGGTTCACAGCACG 59.128 55.000 0.00 0.00 0.00 5.34
4864 5401 2.271944 AGGTTTAGGGTTCACAGCAC 57.728 50.000 0.00 0.00 0.00 4.40
4865 5402 2.173782 TCAAGGTTTAGGGTTCACAGCA 59.826 45.455 0.00 0.00 0.00 4.41
4866 5403 2.858745 TCAAGGTTTAGGGTTCACAGC 58.141 47.619 0.00 0.00 0.00 4.40
4867 5404 5.845391 TTTTCAAGGTTTAGGGTTCACAG 57.155 39.130 0.00 0.00 0.00 3.66
4868 5405 5.105269 GGTTTTTCAAGGTTTAGGGTTCACA 60.105 40.000 0.00 0.00 0.00 3.58
4869 5406 5.128171 AGGTTTTTCAAGGTTTAGGGTTCAC 59.872 40.000 0.00 0.00 0.00 3.18
4870 5407 5.274015 AGGTTTTTCAAGGTTTAGGGTTCA 58.726 37.500 0.00 0.00 0.00 3.18
4871 5408 5.864418 AGGTTTTTCAAGGTTTAGGGTTC 57.136 39.130 0.00 0.00 0.00 3.62
4872 5409 6.437755 ACTAGGTTTTTCAAGGTTTAGGGTT 58.562 36.000 0.00 0.00 0.00 4.11
4873 5410 6.022107 ACTAGGTTTTTCAAGGTTTAGGGT 57.978 37.500 0.00 0.00 0.00 4.34
4874 5411 7.229308 AGTACTAGGTTTTTCAAGGTTTAGGG 58.771 38.462 0.00 0.00 0.00 3.53
4875 5412 8.565416 CAAGTACTAGGTTTTTCAAGGTTTAGG 58.435 37.037 0.00 0.00 0.00 2.69
4876 5413 8.074370 GCAAGTACTAGGTTTTTCAAGGTTTAG 58.926 37.037 0.00 0.00 0.00 1.85
4877 5414 7.776500 AGCAAGTACTAGGTTTTTCAAGGTTTA 59.224 33.333 0.00 0.00 0.00 2.01
4878 5415 6.605995 AGCAAGTACTAGGTTTTTCAAGGTTT 59.394 34.615 0.00 0.00 0.00 3.27
4879 5416 6.127101 AGCAAGTACTAGGTTTTTCAAGGTT 58.873 36.000 0.00 0.00 0.00 3.50
4880 5417 5.691896 AGCAAGTACTAGGTTTTTCAAGGT 58.308 37.500 0.00 0.00 0.00 3.50
4881 5418 6.128254 GCTAGCAAGTACTAGGTTTTTCAAGG 60.128 42.308 10.63 0.00 40.08 3.61
4882 5419 6.426937 TGCTAGCAAGTACTAGGTTTTTCAAG 59.573 38.462 16.84 0.00 40.08 3.02
4883 5420 6.292923 TGCTAGCAAGTACTAGGTTTTTCAA 58.707 36.000 16.84 0.00 40.08 2.69
4884 5421 5.860611 TGCTAGCAAGTACTAGGTTTTTCA 58.139 37.500 16.84 0.00 40.08 2.69
4885 5422 6.796705 TTGCTAGCAAGTACTAGGTTTTTC 57.203 37.500 26.06 0.00 40.08 2.29
4886 5423 6.771267 AGTTTGCTAGCAAGTACTAGGTTTTT 59.229 34.615 26.12 6.76 40.08 1.94
4887 5424 6.296803 AGTTTGCTAGCAAGTACTAGGTTTT 58.703 36.000 26.12 7.36 40.08 2.43
4888 5425 5.866207 AGTTTGCTAGCAAGTACTAGGTTT 58.134 37.500 26.12 7.95 40.08 3.27
4889 5426 5.485209 AGTTTGCTAGCAAGTACTAGGTT 57.515 39.130 26.12 8.55 40.08 3.50
4890 5427 5.485209 AAGTTTGCTAGCAAGTACTAGGT 57.515 39.130 27.05 14.39 40.08 3.08
4891 5428 6.803154 AAAAGTTTGCTAGCAAGTACTAGG 57.197 37.500 27.05 0.00 40.08 3.02
4892 5429 8.089115 AGAAAAAGTTTGCTAGCAAGTACTAG 57.911 34.615 27.05 0.00 42.20 2.57
4893 5430 8.446599 AAGAAAAAGTTTGCTAGCAAGTACTA 57.553 30.769 27.05 13.63 37.24 1.82
4894 5431 6.944234 AGAAAAAGTTTGCTAGCAAGTACT 57.056 33.333 27.82 25.30 37.24 2.73
4895 5432 7.915923 AGAAAGAAAAAGTTTGCTAGCAAGTAC 59.084 33.333 27.82 23.63 37.24 2.73
4896 5433 7.996385 AGAAAGAAAAAGTTTGCTAGCAAGTA 58.004 30.769 27.82 13.71 37.24 2.24
4897 5434 6.867550 AGAAAGAAAAAGTTTGCTAGCAAGT 58.132 32.000 27.82 17.71 37.24 3.16
4898 5435 6.141369 CGAGAAAGAAAAAGTTTGCTAGCAAG 59.859 38.462 27.82 8.76 37.24 4.01
4899 5436 5.971202 CGAGAAAGAAAAAGTTTGCTAGCAA 59.029 36.000 26.06 26.06 0.00 3.91
4900 5437 5.295787 TCGAGAAAGAAAAAGTTTGCTAGCA 59.704 36.000 14.93 14.93 0.00 3.49
4901 5438 5.748592 TCGAGAAAGAAAAAGTTTGCTAGC 58.251 37.500 8.10 8.10 0.00 3.42
4902 5439 9.319223 GTATTCGAGAAAGAAAAAGTTTGCTAG 57.681 33.333 0.00 0.00 33.43 3.42
4903 5440 8.007716 CGTATTCGAGAAAGAAAAAGTTTGCTA 58.992 33.333 0.00 0.00 39.71 3.49
4904 5441 6.851330 CGTATTCGAGAAAGAAAAAGTTTGCT 59.149 34.615 0.00 0.00 39.71 3.91
4905 5442 6.397584 GCGTATTCGAGAAAGAAAAAGTTTGC 60.398 38.462 0.00 0.00 39.71 3.68
4906 5443 6.851330 AGCGTATTCGAGAAAGAAAAAGTTTG 59.149 34.615 0.00 0.00 39.71 2.93
4907 5444 6.956047 AGCGTATTCGAGAAAGAAAAAGTTT 58.044 32.000 0.00 0.00 39.71 2.66
4908 5445 6.541111 AGCGTATTCGAGAAAGAAAAAGTT 57.459 33.333 0.00 0.00 39.71 2.66
4909 5446 7.621633 GCTTAGCGTATTCGAGAAAGAAAAAGT 60.622 37.037 0.00 0.00 39.71 2.66
4910 5447 6.679081 GCTTAGCGTATTCGAGAAAGAAAAAG 59.321 38.462 0.00 0.00 39.71 2.27
4911 5448 6.367969 AGCTTAGCGTATTCGAGAAAGAAAAA 59.632 34.615 0.00 0.00 39.71 1.94
4912 5449 5.867716 AGCTTAGCGTATTCGAGAAAGAAAA 59.132 36.000 0.00 0.00 39.71 2.29
4913 5450 5.408356 AGCTTAGCGTATTCGAGAAAGAAA 58.592 37.500 0.00 0.00 39.71 2.52
4914 5451 4.995124 AGCTTAGCGTATTCGAGAAAGAA 58.005 39.130 0.00 0.00 39.71 2.52
4915 5452 4.634184 AGCTTAGCGTATTCGAGAAAGA 57.366 40.909 0.00 0.00 39.71 2.52
4916 5453 4.380382 GCTAGCTTAGCGTATTCGAGAAAG 59.620 45.833 7.70 0.00 42.62 2.62
4917 5454 4.288531 GCTAGCTTAGCGTATTCGAGAAA 58.711 43.478 7.70 0.00 42.62 2.52
4918 5455 3.886549 GCTAGCTTAGCGTATTCGAGAA 58.113 45.455 7.70 0.00 42.62 2.87
4919 5456 3.539431 GCTAGCTTAGCGTATTCGAGA 57.461 47.619 7.70 0.00 42.62 4.04
4929 5466 9.209970 ATCAATGCAATGATACGCTAGCTTAGC 62.210 40.741 15.68 11.46 41.92 3.09
4930 5467 5.406477 TCAATGCAATGATACGCTAGCTTAG 59.594 40.000 13.93 0.00 0.00 2.18
4931 5468 5.296748 TCAATGCAATGATACGCTAGCTTA 58.703 37.500 13.93 8.45 0.00 3.09
4932 5469 4.129380 TCAATGCAATGATACGCTAGCTT 58.871 39.130 13.93 5.97 0.00 3.74
4933 5470 3.732212 TCAATGCAATGATACGCTAGCT 58.268 40.909 13.93 2.46 0.00 3.32
4934 5471 4.675190 ATCAATGCAATGATACGCTAGC 57.325 40.909 15.68 4.06 38.25 3.42
4935 5472 7.201504 CCTTCTATCAATGCAATGATACGCTAG 60.202 40.741 18.52 11.65 40.44 3.42
4936 5473 6.591448 CCTTCTATCAATGCAATGATACGCTA 59.409 38.462 18.52 2.61 40.44 4.26
4937 5474 5.410746 CCTTCTATCAATGCAATGATACGCT 59.589 40.000 18.52 0.51 40.44 5.07
4938 5475 5.409520 TCCTTCTATCAATGCAATGATACGC 59.590 40.000 18.52 0.00 40.44 4.42
4939 5476 6.870439 TCTCCTTCTATCAATGCAATGATACG 59.130 38.462 18.52 14.61 40.44 3.06
4940 5477 8.093307 TCTCTCCTTCTATCAATGCAATGATAC 58.907 37.037 18.52 0.00 40.44 2.24
4941 5478 8.198807 TCTCTCCTTCTATCAATGCAATGATA 57.801 34.615 20.58 20.58 40.44 2.15
4942 5479 7.075851 TCTCTCCTTCTATCAATGCAATGAT 57.924 36.000 20.55 20.55 42.52 2.45
4943 5480 6.490241 TCTCTCCTTCTATCAATGCAATGA 57.510 37.500 6.97 6.97 0.00 2.57
4944 5481 6.541278 TGTTCTCTCCTTCTATCAATGCAATG 59.459 38.462 0.00 0.00 0.00 2.82
4945 5482 6.656902 TGTTCTCTCCTTCTATCAATGCAAT 58.343 36.000 0.00 0.00 0.00 3.56
4946 5483 6.053632 TGTTCTCTCCTTCTATCAATGCAA 57.946 37.500 0.00 0.00 0.00 4.08
4947 5484 5.682234 TGTTCTCTCCTTCTATCAATGCA 57.318 39.130 0.00 0.00 0.00 3.96
4948 5485 6.597280 ACTTTGTTCTCTCCTTCTATCAATGC 59.403 38.462 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.