Multiple sequence alignment - TraesCS6D01G393400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G393400 chr6D 100.000 2684 0 0 1 2684 467202501 467199818 0.000000e+00 4957.0
1 TraesCS6D01G393400 chr6D 79.056 339 60 11 1110 1441 467175402 467175736 3.480000e-54 222.0
2 TraesCS6D01G393400 chr6B 90.533 1331 95 12 879 2186 712327558 712328880 0.000000e+00 1731.0
3 TraesCS6D01G393400 chr6B 87.782 843 93 6 1 833 702198999 702198157 0.000000e+00 977.0
4 TraesCS6D01G393400 chr6B 83.943 847 120 8 1 834 147686414 147685571 0.000000e+00 797.0
5 TraesCS6D01G393400 chr6B 72.561 328 79 6 1109 1435 712452577 712452260 2.200000e-16 97.1
6 TraesCS6D01G393400 chr6A 93.898 803 38 5 833 1629 613633781 613632984 0.000000e+00 1201.0
7 TraesCS6D01G393400 chr6A 72.892 332 74 12 1109 1436 613604913 613604594 1.700000e-17 100.0
8 TraesCS6D01G393400 chr3D 89.905 842 70 3 1 832 67072376 67073212 0.000000e+00 1070.0
9 TraesCS6D01G393400 chr2B 89.692 844 76 3 1 833 107563525 107562682 0.000000e+00 1066.0
10 TraesCS6D01G393400 chr2B 89.344 854 73 6 3 845 683593238 683592392 0.000000e+00 1057.0
11 TraesCS6D01G393400 chr2B 88.863 853 84 3 3 845 683387387 683386536 0.000000e+00 1038.0
12 TraesCS6D01G393400 chr4A 88.771 846 82 9 1 834 739440815 739439971 0.000000e+00 1024.0
13 TraesCS6D01G393400 chr4A 86.202 761 102 3 75 834 506704038 506703280 0.000000e+00 821.0
14 TraesCS6D01G393400 chr7B 87.055 842 98 7 1 832 697865515 697864675 0.000000e+00 941.0
15 TraesCS6D01G393400 chrUn 80.370 270 49 4 2265 2531 285885393 285885125 4.530000e-48 202.0
16 TraesCS6D01G393400 chr1D 78.000 300 45 14 2265 2556 373123575 373123861 4.600000e-38 169.0
17 TraesCS6D01G393400 chr7A 82.443 131 13 7 2443 2565 171533323 171533195 3.650000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G393400 chr6D 467199818 467202501 2683 True 4957 4957 100.000 1 2684 1 chr6D.!!$R1 2683
1 TraesCS6D01G393400 chr6B 712327558 712328880 1322 False 1731 1731 90.533 879 2186 1 chr6B.!!$F1 1307
2 TraesCS6D01G393400 chr6B 702198157 702198999 842 True 977 977 87.782 1 833 1 chr6B.!!$R2 832
3 TraesCS6D01G393400 chr6B 147685571 147686414 843 True 797 797 83.943 1 834 1 chr6B.!!$R1 833
4 TraesCS6D01G393400 chr6A 613632984 613633781 797 True 1201 1201 93.898 833 1629 1 chr6A.!!$R2 796
5 TraesCS6D01G393400 chr3D 67072376 67073212 836 False 1070 1070 89.905 1 832 1 chr3D.!!$F1 831
6 TraesCS6D01G393400 chr2B 107562682 107563525 843 True 1066 1066 89.692 1 833 1 chr2B.!!$R1 832
7 TraesCS6D01G393400 chr2B 683592392 683593238 846 True 1057 1057 89.344 3 845 1 chr2B.!!$R3 842
8 TraesCS6D01G393400 chr2B 683386536 683387387 851 True 1038 1038 88.863 3 845 1 chr2B.!!$R2 842
9 TraesCS6D01G393400 chr4A 739439971 739440815 844 True 1024 1024 88.771 1 834 1 chr4A.!!$R2 833
10 TraesCS6D01G393400 chr4A 506703280 506704038 758 True 821 821 86.202 75 834 1 chr4A.!!$R1 759
11 TraesCS6D01G393400 chr7B 697864675 697865515 840 True 941 941 87.055 1 832 1 chr7B.!!$R1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 119 0.454600 GGGACTGCACAATCATGCTG 59.545 55.0 3.44 3.44 46.28 4.41 F
315 326 0.537143 CTGCACCAGTGTTGCCCTAA 60.537 55.0 10.43 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 1661 0.179034 GGAAGCAGCAGTATCTGGGG 60.179 60.0 0.0 0.0 34.74 4.96 R
2191 2259 0.105964 CATTGGGATCGCCGGTTCTA 59.894 55.0 1.9 0.0 33.83 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 119 0.454600 GGGACTGCACAATCATGCTG 59.545 55.000 3.44 3.44 46.28 4.41
130 141 2.388735 TGTGGAGAATCTGGTCGCTAT 58.611 47.619 0.00 0.00 33.73 2.97
303 314 1.665264 CTGCACAAACACCTGCACCA 61.665 55.000 0.00 0.00 38.49 4.17
314 325 1.073025 CTGCACCAGTGTTGCCCTA 59.927 57.895 10.43 0.00 0.00 3.53
315 326 0.537143 CTGCACCAGTGTTGCCCTAA 60.537 55.000 10.43 0.00 0.00 2.69
347 358 1.541310 CCTGGACAGACCGCCTTGTA 61.541 60.000 0.00 0.00 42.61 2.41
486 497 2.120232 CTAGAAGCCGAACTACATGCG 58.880 52.381 0.00 0.00 0.00 4.73
561 572 1.457303 CAAACCGACTCTTCAGAAGCG 59.543 52.381 5.15 1.56 0.00 4.68
611 622 3.859386 CGTTTTTCTGCTTATGGGCATTC 59.141 43.478 0.00 0.00 41.63 2.67
671 682 7.118680 AGAGTTTATTCCGTCGAAAATTAAGCA 59.881 33.333 0.00 0.00 0.00 3.91
825 837 7.626390 TGGAATAAAATCTCTTTTACCCTCGA 58.374 34.615 10.09 0.00 39.10 4.04
909 925 1.269569 CCCTATTCTCGCGTGCACATA 60.270 52.381 18.64 4.94 0.00 2.29
917 933 4.177783 TCTCGCGTGCACATAAATAGAAA 58.822 39.130 18.64 0.00 0.00 2.52
920 936 4.021822 CGCGTGCACATAAATAGAAACAG 58.978 43.478 18.64 0.00 0.00 3.16
937 953 1.243902 CAGCCTAGATCGAGTCCCTC 58.756 60.000 1.97 0.00 0.00 4.30
951 967 3.698040 GAGTCCCTCGTTAGATACCAACA 59.302 47.826 0.00 0.00 0.00 3.33
962 978 7.332430 TCGTTAGATACCAACAACTACCAATTG 59.668 37.037 0.00 0.00 0.00 2.32
1025 1046 2.125310 CACCCGCGCATGTCCTTA 60.125 61.111 8.75 0.00 0.00 2.69
1221 1242 2.732658 GTCACCACCGACGGTCTT 59.267 61.111 18.72 3.44 37.07 3.01
1503 1524 1.270550 GAGAATGTGGCAAAGTGTGGG 59.729 52.381 0.00 0.00 0.00 4.61
1599 1647 1.890625 CTCCAGACTCTGCTGCTGCT 61.891 60.000 17.00 0.00 40.48 4.24
1600 1648 1.003597 CCAGACTCTGCTGCTGCTT 60.004 57.895 17.00 0.00 40.48 3.91
1601 1649 1.020333 CCAGACTCTGCTGCTGCTTC 61.020 60.000 17.00 7.83 40.48 3.86
1602 1650 1.020333 CAGACTCTGCTGCTGCTTCC 61.020 60.000 17.00 2.15 40.48 3.46
1603 1651 1.744741 GACTCTGCTGCTGCTTCCC 60.745 63.158 17.00 0.00 40.48 3.97
1604 1652 2.438075 CTCTGCTGCTGCTTCCCC 60.438 66.667 17.00 0.00 40.48 4.81
1605 1653 3.251509 TCTGCTGCTGCTTCCCCA 61.252 61.111 17.00 0.00 40.48 4.96
1606 1654 2.282674 CTGCTGCTGCTTCCCCAA 60.283 61.111 17.00 0.00 40.48 4.12
1607 1655 2.282674 TGCTGCTGCTTCCCCAAG 60.283 61.111 17.00 0.00 40.48 3.61
1608 1656 2.034687 GCTGCTGCTTCCCCAAGA 59.965 61.111 8.53 0.00 36.03 3.02
1609 1657 1.604593 GCTGCTGCTTCCCCAAGAA 60.605 57.895 8.53 0.00 36.03 2.52
1617 1665 1.368374 CTTCCCCAAGAAGTACCCCA 58.632 55.000 0.00 0.00 45.99 4.96
1618 1666 1.282157 CTTCCCCAAGAAGTACCCCAG 59.718 57.143 0.00 0.00 45.99 4.45
1619 1667 0.494551 TCCCCAAGAAGTACCCCAGA 59.505 55.000 0.00 0.00 0.00 3.86
1620 1668 1.082194 TCCCCAAGAAGTACCCCAGAT 59.918 52.381 0.00 0.00 0.00 2.90
1621 1669 2.319747 TCCCCAAGAAGTACCCCAGATA 59.680 50.000 0.00 0.00 0.00 1.98
1622 1670 2.438392 CCCCAAGAAGTACCCCAGATAC 59.562 54.545 0.00 0.00 0.00 2.24
1623 1671 3.385115 CCCAAGAAGTACCCCAGATACT 58.615 50.000 0.00 0.00 34.25 2.12
1624 1672 3.134804 CCCAAGAAGTACCCCAGATACTG 59.865 52.174 0.00 0.00 33.11 2.74
1625 1673 3.432326 CCAAGAAGTACCCCAGATACTGC 60.432 52.174 0.00 0.00 33.11 4.40
1626 1674 3.406512 AGAAGTACCCCAGATACTGCT 57.593 47.619 0.00 0.00 34.20 4.24
1627 1675 3.034635 AGAAGTACCCCAGATACTGCTG 58.965 50.000 0.00 0.00 37.19 4.41
1628 1676 1.123928 AGTACCCCAGATACTGCTGC 58.876 55.000 0.00 0.00 34.56 5.25
1671 1719 2.050350 AGCTGCCATTGCGAATGCT 61.050 52.632 0.00 0.00 43.34 3.79
1676 1724 0.590732 GCCATTGCGAATGCTTCTCG 60.591 55.000 0.00 0.00 43.34 4.04
1694 1742 3.564644 TCTCGACCATAGGAAGAACGATC 59.435 47.826 0.00 0.00 0.00 3.69
1708 1756 3.952323 AGAACGATCAAGATCCTTCGGTA 59.048 43.478 12.76 0.00 37.67 4.02
1709 1757 3.712091 ACGATCAAGATCCTTCGGTAC 57.288 47.619 4.58 0.00 35.98 3.34
1715 1763 6.294010 CGATCAAGATCCTTCGGTACAAGATA 60.294 42.308 4.58 0.00 34.40 1.98
1716 1764 6.145338 TCAAGATCCTTCGGTACAAGATAC 57.855 41.667 0.00 0.00 0.00 2.24
1802 1862 6.136071 CAGTTACGCATATTGGTAATGCTTC 58.864 40.000 6.50 0.00 46.05 3.86
1804 1864 2.548057 ACGCATATTGGTAATGCTTCCG 59.452 45.455 6.50 0.00 46.05 4.30
1806 1866 2.554032 GCATATTGGTAATGCTTCCGCT 59.446 45.455 0.93 0.00 45.05 5.52
1808 1868 2.717639 ATTGGTAATGCTTCCGCTCT 57.282 45.000 0.00 0.00 36.97 4.09
1823 1883 4.637276 TCCGCTCTTCTGTTATTTGTTCA 58.363 39.130 0.00 0.00 0.00 3.18
1827 1887 6.017933 CGCTCTTCTGTTATTTGTTCATGTC 58.982 40.000 0.00 0.00 0.00 3.06
1851 1911 8.373992 GTCTGTTAATCAAGAGTTATTGACGTC 58.626 37.037 9.11 9.11 41.76 4.34
1871 1931 5.258456 GTCTTTACCATCCAGACGTATCA 57.742 43.478 0.00 0.00 0.00 2.15
1876 1936 2.832129 ACCATCCAGACGTATCACAACT 59.168 45.455 0.00 0.00 0.00 3.16
1885 1945 6.093404 CAGACGTATCACAACTCTTATGTGT 58.907 40.000 6.56 0.00 46.42 3.72
1897 1957 9.197306 ACAACTCTTATGTGTCACCTATACATA 57.803 33.333 0.00 0.00 40.15 2.29
1913 1973 9.962783 ACCTATACATAAAAACTAAGCTACTCG 57.037 33.333 0.00 0.00 0.00 4.18
1922 1982 8.690680 AAAAACTAAGCTACTCGACTAATCAG 57.309 34.615 0.00 0.00 0.00 2.90
1950 2010 9.934190 ACAATTATCACAATTTTGTTCTTTTGC 57.066 25.926 0.00 0.00 39.91 3.68
2015 2080 9.920133 TGCAAATATTGAAACAAATACTAGCAA 57.080 25.926 0.00 0.00 29.60 3.91
2023 2088 7.739295 TGAAACAAATACTAGCAACGAAGATC 58.261 34.615 0.00 0.00 0.00 2.75
2024 2089 6.663944 AACAAATACTAGCAACGAAGATCC 57.336 37.500 0.00 0.00 0.00 3.36
2026 2091 5.581085 ACAAATACTAGCAACGAAGATCCAC 59.419 40.000 0.00 0.00 0.00 4.02
2027 2092 5.339008 AATACTAGCAACGAAGATCCACA 57.661 39.130 0.00 0.00 0.00 4.17
2035 2100 7.251704 AGCAACGAAGATCCACAATAATTAG 57.748 36.000 0.00 0.00 0.00 1.73
2036 2101 7.047891 AGCAACGAAGATCCACAATAATTAGA 58.952 34.615 0.00 0.00 0.00 2.10
2038 2103 8.988934 GCAACGAAGATCCACAATAATTAGATA 58.011 33.333 0.00 0.00 0.00 1.98
2112 2177 4.119136 CAAAACAACACAAGAATCCCACC 58.881 43.478 0.00 0.00 0.00 4.61
2117 2182 0.606401 CACAAGAATCCCACCGCACT 60.606 55.000 0.00 0.00 0.00 4.40
2120 2185 0.108329 AAGAATCCCACCGCACTACG 60.108 55.000 0.00 0.00 43.15 3.51
2142 2207 4.523173 CGGGGATAGATTGTGCTAGTAGAA 59.477 45.833 0.00 0.00 0.00 2.10
2156 2224 6.418226 GTGCTAGTAGAATTACATTCCAGACG 59.582 42.308 0.00 0.00 40.13 4.18
2159 2227 2.550978 AGAATTACATTCCAGACGGCG 58.449 47.619 4.80 4.80 40.13 6.46
2170 2238 1.018148 CAGACGGCGTATGTCTCTCT 58.982 55.000 25.13 7.14 44.60 3.10
2173 2241 0.179134 ACGGCGTATGTCTCTCTTGC 60.179 55.000 12.58 0.00 0.00 4.01
2191 2259 3.735181 CGTAAGAGCGCCTAAACCT 57.265 52.632 2.29 0.00 43.02 3.50
2192 2260 2.857592 CGTAAGAGCGCCTAAACCTA 57.142 50.000 2.29 0.00 43.02 3.08
2193 2261 2.728922 CGTAAGAGCGCCTAAACCTAG 58.271 52.381 2.29 0.00 43.02 3.02
2194 2262 2.357009 CGTAAGAGCGCCTAAACCTAGA 59.643 50.000 2.29 0.00 43.02 2.43
2195 2263 3.181493 CGTAAGAGCGCCTAAACCTAGAA 60.181 47.826 2.29 0.00 43.02 2.10
2196 2264 2.963548 AGAGCGCCTAAACCTAGAAC 57.036 50.000 2.29 0.00 0.00 3.01
2197 2265 1.481363 AGAGCGCCTAAACCTAGAACC 59.519 52.381 2.29 0.00 0.00 3.62
2198 2266 0.175073 AGCGCCTAAACCTAGAACCG 59.825 55.000 2.29 0.00 0.00 4.44
2199 2267 0.808847 GCGCCTAAACCTAGAACCGG 60.809 60.000 0.00 0.00 0.00 5.28
2200 2268 0.808847 CGCCTAAACCTAGAACCGGC 60.809 60.000 0.00 0.00 0.00 6.13
2201 2269 0.808847 GCCTAAACCTAGAACCGGCG 60.809 60.000 0.00 0.00 0.00 6.46
2202 2270 0.819582 CCTAAACCTAGAACCGGCGA 59.180 55.000 9.30 0.00 0.00 5.54
2203 2271 1.411612 CCTAAACCTAGAACCGGCGAT 59.588 52.381 9.30 0.00 0.00 4.58
2204 2272 2.545322 CCTAAACCTAGAACCGGCGATC 60.545 54.545 9.30 6.50 0.00 3.69
2205 2273 0.177373 AAACCTAGAACCGGCGATCC 59.823 55.000 9.30 0.00 0.00 3.36
2206 2274 1.683418 AACCTAGAACCGGCGATCCC 61.683 60.000 9.30 0.00 0.00 3.85
2207 2275 2.131709 CCTAGAACCGGCGATCCCA 61.132 63.158 9.30 0.00 0.00 4.37
2208 2276 1.682451 CCTAGAACCGGCGATCCCAA 61.682 60.000 9.30 0.00 0.00 4.12
2209 2277 0.393077 CTAGAACCGGCGATCCCAAT 59.607 55.000 9.30 0.00 0.00 3.16
2210 2278 0.105964 TAGAACCGGCGATCCCAATG 59.894 55.000 9.30 0.00 0.00 2.82
2211 2279 2.124320 AACCGGCGATCCCAATGG 60.124 61.111 9.30 0.00 0.00 3.16
2212 2280 2.886730 GAACCGGCGATCCCAATGGT 62.887 60.000 9.30 0.00 0.00 3.55
2213 2281 2.124320 CCGGCGATCCCAATGGTT 60.124 61.111 9.30 0.00 0.00 3.67
2214 2282 2.186826 CCGGCGATCCCAATGGTTC 61.187 63.158 9.30 0.00 0.00 3.62
2215 2283 1.153168 CGGCGATCCCAATGGTTCT 60.153 57.895 0.00 0.00 0.00 3.01
2216 2284 0.748005 CGGCGATCCCAATGGTTCTT 60.748 55.000 0.00 0.00 0.00 2.52
2217 2285 1.474330 GGCGATCCCAATGGTTCTTT 58.526 50.000 0.00 0.00 0.00 2.52
2218 2286 2.650322 GGCGATCCCAATGGTTCTTTA 58.350 47.619 0.00 0.00 0.00 1.85
2219 2287 3.020984 GGCGATCCCAATGGTTCTTTAA 58.979 45.455 0.00 0.00 0.00 1.52
2220 2288 3.066760 GGCGATCCCAATGGTTCTTTAAG 59.933 47.826 0.00 0.00 0.00 1.85
2221 2289 3.694566 GCGATCCCAATGGTTCTTTAAGT 59.305 43.478 0.00 0.00 0.00 2.24
2222 2290 4.438744 GCGATCCCAATGGTTCTTTAAGTG 60.439 45.833 0.00 0.00 0.00 3.16
2223 2291 4.438744 CGATCCCAATGGTTCTTTAAGTGC 60.439 45.833 0.00 0.00 0.00 4.40
2224 2292 3.838565 TCCCAATGGTTCTTTAAGTGCA 58.161 40.909 0.00 0.00 0.00 4.57
2225 2293 3.826157 TCCCAATGGTTCTTTAAGTGCAG 59.174 43.478 0.00 0.00 0.00 4.41
2226 2294 3.573967 CCCAATGGTTCTTTAAGTGCAGT 59.426 43.478 0.00 0.00 0.00 4.40
2227 2295 4.549458 CCAATGGTTCTTTAAGTGCAGTG 58.451 43.478 0.00 0.00 0.00 3.66
2228 2296 4.549458 CAATGGTTCTTTAAGTGCAGTGG 58.451 43.478 0.00 0.00 0.00 4.00
2229 2297 2.582052 TGGTTCTTTAAGTGCAGTGGG 58.418 47.619 0.00 0.00 0.00 4.61
2230 2298 1.269723 GGTTCTTTAAGTGCAGTGGGC 59.730 52.381 0.00 0.00 45.13 5.36
2231 2299 1.269723 GTTCTTTAAGTGCAGTGGGCC 59.730 52.381 0.00 0.00 43.89 5.80
2232 2300 0.771127 TCTTTAAGTGCAGTGGGCCT 59.229 50.000 4.53 0.00 43.89 5.19
2233 2301 1.144913 TCTTTAAGTGCAGTGGGCCTT 59.855 47.619 4.53 0.00 43.89 4.35
2234 2302 1.541588 CTTTAAGTGCAGTGGGCCTTC 59.458 52.381 4.53 0.00 43.89 3.46
2235 2303 0.605319 TTAAGTGCAGTGGGCCTTCG 60.605 55.000 4.53 0.00 43.89 3.79
2236 2304 1.476845 TAAGTGCAGTGGGCCTTCGA 61.477 55.000 4.53 0.00 43.89 3.71
2237 2305 2.738213 AAGTGCAGTGGGCCTTCGAG 62.738 60.000 4.53 0.00 43.89 4.04
2238 2306 4.704833 TGCAGTGGGCCTTCGAGC 62.705 66.667 4.53 8.65 43.89 5.03
2239 2307 4.704833 GCAGTGGGCCTTCGAGCA 62.705 66.667 4.53 0.00 36.11 4.26
2240 2308 2.032528 CAGTGGGCCTTCGAGCAA 59.967 61.111 4.53 0.00 0.00 3.91
2241 2309 1.377725 CAGTGGGCCTTCGAGCAAT 60.378 57.895 4.53 0.00 0.00 3.56
2242 2310 1.078143 AGTGGGCCTTCGAGCAATC 60.078 57.895 4.53 0.00 0.00 2.67
2243 2311 2.125147 TGGGCCTTCGAGCAATCG 60.125 61.111 4.53 0.00 0.00 3.34
2244 2312 2.186903 GGGCCTTCGAGCAATCGA 59.813 61.111 0.84 0.00 40.66 3.59
2246 2314 1.706287 GGGCCTTCGAGCAATCGAAC 61.706 60.000 8.86 1.46 45.60 3.95
2247 2315 1.019278 GGCCTTCGAGCAATCGAACA 61.019 55.000 8.86 0.00 45.60 3.18
2248 2316 0.371645 GCCTTCGAGCAATCGAACAG 59.628 55.000 8.86 5.41 45.60 3.16
2249 2317 1.002366 CCTTCGAGCAATCGAACAGG 58.998 55.000 8.86 6.51 45.60 4.00
2250 2318 1.404181 CCTTCGAGCAATCGAACAGGA 60.404 52.381 11.25 0.00 45.60 3.86
2251 2319 2.337583 CTTCGAGCAATCGAACAGGAA 58.662 47.619 8.86 0.00 45.60 3.36
2252 2320 2.448926 TCGAGCAATCGAACAGGAAA 57.551 45.000 0.00 0.00 39.34 3.13
2253 2321 2.761559 TCGAGCAATCGAACAGGAAAA 58.238 42.857 0.00 0.00 39.34 2.29
2254 2322 3.135225 TCGAGCAATCGAACAGGAAAAA 58.865 40.909 0.00 0.00 39.34 1.94
2270 2338 1.589803 AAAAACGGGTCGAACCTCTG 58.410 50.000 19.34 4.39 38.64 3.35
2271 2339 0.466963 AAAACGGGTCGAACCTCTGT 59.533 50.000 19.34 5.15 38.64 3.41
2272 2340 0.466963 AAACGGGTCGAACCTCTGTT 59.533 50.000 19.34 11.76 38.64 3.16
2273 2341 0.249741 AACGGGTCGAACCTCTGTTG 60.250 55.000 19.34 2.71 38.64 3.33
2274 2342 1.111116 ACGGGTCGAACCTCTGTTGA 61.111 55.000 19.34 0.00 38.64 3.18
2275 2343 0.666577 CGGGTCGAACCTCTGTTGAC 60.667 60.000 19.34 0.00 38.64 3.18
2276 2344 0.320508 GGGTCGAACCTCTGTTGACC 60.321 60.000 13.76 13.75 43.91 4.02
2277 2345 0.666577 GGTCGAACCTCTGTTGACCG 60.667 60.000 0.00 0.00 40.01 4.79
2278 2346 1.006571 TCGAACCTCTGTTGACCGC 60.007 57.895 0.00 0.00 33.97 5.68
2279 2347 1.006102 CGAACCTCTGTTGACCGCT 60.006 57.895 0.00 0.00 33.97 5.52
2280 2348 1.284982 CGAACCTCTGTTGACCGCTG 61.285 60.000 0.00 0.00 33.97 5.18
2281 2349 0.951040 GAACCTCTGTTGACCGCTGG 60.951 60.000 0.00 0.00 33.97 4.85
2282 2350 2.046892 CCTCTGTTGACCGCTGGG 60.047 66.667 0.00 0.00 40.11 4.45
2283 2351 2.046892 CTCTGTTGACCGCTGGGG 60.047 66.667 9.49 9.49 43.62 4.96
2284 2352 2.525629 TCTGTTGACCGCTGGGGA 60.526 61.111 18.53 0.00 39.97 4.81
2285 2353 2.046892 CTGTTGACCGCTGGGGAG 60.047 66.667 18.53 0.00 39.97 4.30
2286 2354 2.525629 TGTTGACCGCTGGGGAGA 60.526 61.111 18.53 0.00 39.97 3.71
2287 2355 2.266055 GTTGACCGCTGGGGAGAG 59.734 66.667 18.53 0.00 39.97 3.20
2288 2356 3.003173 TTGACCGCTGGGGAGAGG 61.003 66.667 18.53 0.00 39.97 3.69
2290 2358 4.779733 GACCGCTGGGGAGAGGGA 62.780 72.222 18.53 0.00 39.97 4.20
2295 2363 2.760385 CTGGGGAGAGGGACCGTC 60.760 72.222 6.04 6.04 0.00 4.79
2296 2364 4.753662 TGGGGAGAGGGACCGTCG 62.754 72.222 8.50 0.00 0.00 5.12
2306 2374 4.549516 GACCGTCGCCGCCTAGTC 62.550 72.222 0.00 0.00 0.00 2.59
2308 2376 4.554363 CCGTCGCCGCCTAGTCAG 62.554 72.222 0.00 0.00 0.00 3.51
2309 2377 3.506096 CGTCGCCGCCTAGTCAGA 61.506 66.667 0.00 0.00 0.00 3.27
2310 2378 2.102553 GTCGCCGCCTAGTCAGAC 59.897 66.667 0.00 0.00 0.00 3.51
2311 2379 2.045242 TCGCCGCCTAGTCAGACT 60.045 61.111 8.50 8.50 0.00 3.24
2312 2380 2.103143 CGCCGCCTAGTCAGACTG 59.897 66.667 13.84 0.00 0.00 3.51
2313 2381 2.496817 GCCGCCTAGTCAGACTGG 59.503 66.667 13.84 10.30 0.00 4.00
2314 2382 2.352032 GCCGCCTAGTCAGACTGGT 61.352 63.158 13.84 0.00 0.00 4.00
2315 2383 1.810532 CCGCCTAGTCAGACTGGTC 59.189 63.158 13.84 0.00 0.00 4.02
2316 2384 1.668101 CCGCCTAGTCAGACTGGTCC 61.668 65.000 13.84 2.85 0.00 4.46
2317 2385 1.810532 GCCTAGTCAGACTGGTCCG 59.189 63.158 13.84 0.00 0.00 4.79
2318 2386 0.966370 GCCTAGTCAGACTGGTCCGT 60.966 60.000 13.84 0.00 0.00 4.69
2319 2387 1.681166 GCCTAGTCAGACTGGTCCGTA 60.681 57.143 13.84 0.00 0.00 4.02
2320 2388 2.015587 CCTAGTCAGACTGGTCCGTAC 58.984 57.143 13.84 0.00 0.00 3.67
2321 2389 2.617276 CCTAGTCAGACTGGTCCGTACA 60.617 54.545 13.84 0.00 0.00 2.90
2322 2390 1.991121 AGTCAGACTGGTCCGTACAA 58.009 50.000 0.91 0.00 0.00 2.41
2323 2391 1.612463 AGTCAGACTGGTCCGTACAAC 59.388 52.381 0.91 0.00 0.00 3.32
2324 2392 1.612463 GTCAGACTGGTCCGTACAACT 59.388 52.381 1.81 0.00 0.00 3.16
2325 2393 2.035576 GTCAGACTGGTCCGTACAACTT 59.964 50.000 1.81 0.00 0.00 2.66
2326 2394 2.295349 TCAGACTGGTCCGTACAACTTC 59.705 50.000 1.81 0.00 0.00 3.01
2327 2395 1.268899 AGACTGGTCCGTACAACTTCG 59.731 52.381 0.00 0.00 0.00 3.79
2328 2396 1.267806 GACTGGTCCGTACAACTTCGA 59.732 52.381 0.00 0.00 0.00 3.71
2329 2397 1.891150 ACTGGTCCGTACAACTTCGAT 59.109 47.619 0.00 0.00 0.00 3.59
2330 2398 2.094854 ACTGGTCCGTACAACTTCGATC 60.095 50.000 0.00 0.00 0.00 3.69
2331 2399 2.163815 CTGGTCCGTACAACTTCGATCT 59.836 50.000 0.00 0.00 0.00 2.75
2332 2400 2.163010 TGGTCCGTACAACTTCGATCTC 59.837 50.000 0.00 0.00 0.00 2.75
2333 2401 2.479219 GGTCCGTACAACTTCGATCTCC 60.479 54.545 0.00 0.00 0.00 3.71
2334 2402 1.747355 TCCGTACAACTTCGATCTCCC 59.253 52.381 0.00 0.00 0.00 4.30
2335 2403 1.749634 CCGTACAACTTCGATCTCCCT 59.250 52.381 0.00 0.00 0.00 4.20
2336 2404 2.223525 CCGTACAACTTCGATCTCCCTC 60.224 54.545 0.00 0.00 0.00 4.30
2337 2405 2.223525 CGTACAACTTCGATCTCCCTCC 60.224 54.545 0.00 0.00 0.00 4.30
2338 2406 0.818296 ACAACTTCGATCTCCCTCCG 59.182 55.000 0.00 0.00 0.00 4.63
2339 2407 0.528684 CAACTTCGATCTCCCTCCGC 60.529 60.000 0.00 0.00 0.00 5.54
2340 2408 0.684805 AACTTCGATCTCCCTCCGCT 60.685 55.000 0.00 0.00 0.00 5.52
2341 2409 1.104577 ACTTCGATCTCCCTCCGCTC 61.105 60.000 0.00 0.00 0.00 5.03
2342 2410 1.801309 CTTCGATCTCCCTCCGCTCC 61.801 65.000 0.00 0.00 0.00 4.70
2343 2411 3.665226 CGATCTCCCTCCGCTCCG 61.665 72.222 0.00 0.00 0.00 4.63
2353 2421 4.294523 CCGCTCCGGTCAAATCAA 57.705 55.556 0.00 0.00 42.73 2.57
2354 2422 1.794222 CCGCTCCGGTCAAATCAAC 59.206 57.895 0.00 0.00 42.73 3.18
2355 2423 1.644786 CCGCTCCGGTCAAATCAACC 61.645 60.000 0.00 0.00 42.73 3.77
2356 2424 0.953471 CGCTCCGGTCAAATCAACCA 60.953 55.000 0.00 0.00 36.53 3.67
2357 2425 1.243902 GCTCCGGTCAAATCAACCAA 58.756 50.000 0.00 0.00 36.53 3.67
2358 2426 1.200020 GCTCCGGTCAAATCAACCAAG 59.800 52.381 0.00 0.00 36.53 3.61
2359 2427 1.200020 CTCCGGTCAAATCAACCAAGC 59.800 52.381 0.00 0.00 36.53 4.01
2360 2428 1.202879 TCCGGTCAAATCAACCAAGCT 60.203 47.619 0.00 0.00 36.53 3.74
2361 2429 1.613437 CCGGTCAAATCAACCAAGCTT 59.387 47.619 0.00 0.00 36.53 3.74
2362 2430 2.351738 CCGGTCAAATCAACCAAGCTTC 60.352 50.000 0.00 0.00 36.53 3.86
2363 2431 2.351738 CGGTCAAATCAACCAAGCTTCC 60.352 50.000 0.00 0.00 36.53 3.46
2364 2432 2.893489 GGTCAAATCAACCAAGCTTCCT 59.107 45.455 0.00 0.00 36.75 3.36
2365 2433 3.057245 GGTCAAATCAACCAAGCTTCCTC 60.057 47.826 0.00 0.00 36.75 3.71
2366 2434 3.823304 GTCAAATCAACCAAGCTTCCTCT 59.177 43.478 0.00 0.00 0.00 3.69
2367 2435 3.822735 TCAAATCAACCAAGCTTCCTCTG 59.177 43.478 0.00 0.00 0.00 3.35
2368 2436 2.503895 ATCAACCAAGCTTCCTCTGG 57.496 50.000 0.00 0.00 0.00 3.86
2369 2437 1.140312 TCAACCAAGCTTCCTCTGGT 58.860 50.000 0.95 0.95 0.00 4.00
2370 2438 1.494721 TCAACCAAGCTTCCTCTGGTT 59.505 47.619 12.99 12.99 42.86 3.67
2371 2439 1.986882 AACCAAGCTTCCTCTGGTTG 58.013 50.000 17.08 0.00 40.85 3.77
2372 2440 0.846693 ACCAAGCTTCCTCTGGTTGT 59.153 50.000 0.95 0.00 40.15 3.32
2373 2441 1.202818 ACCAAGCTTCCTCTGGTTGTC 60.203 52.381 0.95 0.00 40.15 3.18
2374 2442 1.072965 CCAAGCTTCCTCTGGTTGTCT 59.927 52.381 0.00 0.00 40.15 3.41
2375 2443 2.421619 CAAGCTTCCTCTGGTTGTCTC 58.578 52.381 0.00 0.00 37.90 3.36
2376 2444 0.980423 AGCTTCCTCTGGTTGTCTCC 59.020 55.000 0.00 0.00 0.00 3.71
2377 2445 0.035915 GCTTCCTCTGGTTGTCTCCC 60.036 60.000 0.00 0.00 0.00 4.30
2378 2446 1.352083 CTTCCTCTGGTTGTCTCCCA 58.648 55.000 0.00 0.00 0.00 4.37
2379 2447 1.002544 CTTCCTCTGGTTGTCTCCCAC 59.997 57.143 0.00 0.00 0.00 4.61
2380 2448 0.191064 TCCTCTGGTTGTCTCCCACT 59.809 55.000 0.00 0.00 0.00 4.00
2381 2449 0.322975 CCTCTGGTTGTCTCCCACTG 59.677 60.000 0.00 0.00 0.00 3.66
2382 2450 1.051812 CTCTGGTTGTCTCCCACTGT 58.948 55.000 0.00 0.00 0.00 3.55
2383 2451 1.417890 CTCTGGTTGTCTCCCACTGTT 59.582 52.381 0.00 0.00 0.00 3.16
2384 2452 1.416401 TCTGGTTGTCTCCCACTGTTC 59.584 52.381 0.00 0.00 0.00 3.18
2385 2453 0.472471 TGGTTGTCTCCCACTGTTCC 59.528 55.000 0.00 0.00 0.00 3.62
2386 2454 0.472471 GGTTGTCTCCCACTGTTCCA 59.528 55.000 0.00 0.00 0.00 3.53
2387 2455 1.543429 GGTTGTCTCCCACTGTTCCAG 60.543 57.143 0.00 0.00 37.52 3.86
2388 2456 1.416401 GTTGTCTCCCACTGTTCCAGA 59.584 52.381 0.00 0.00 35.18 3.86
2389 2457 1.342074 TGTCTCCCACTGTTCCAGAG 58.658 55.000 0.00 0.00 35.18 3.35
2390 2458 1.343069 GTCTCCCACTGTTCCAGAGT 58.657 55.000 0.00 0.00 35.18 3.24
2391 2459 1.273886 GTCTCCCACTGTTCCAGAGTC 59.726 57.143 0.00 0.00 35.18 3.36
2392 2460 0.610687 CTCCCACTGTTCCAGAGTCC 59.389 60.000 0.00 0.00 35.18 3.85
2393 2461 0.105194 TCCCACTGTTCCAGAGTCCA 60.105 55.000 0.00 0.00 35.18 4.02
2394 2462 0.764890 CCCACTGTTCCAGAGTCCAA 59.235 55.000 0.00 0.00 35.18 3.53
2395 2463 1.142870 CCCACTGTTCCAGAGTCCAAA 59.857 52.381 0.00 0.00 35.18 3.28
2396 2464 2.222027 CCACTGTTCCAGAGTCCAAAC 58.778 52.381 0.00 0.00 35.18 2.93
2397 2465 2.158755 CCACTGTTCCAGAGTCCAAACT 60.159 50.000 0.00 0.00 38.88 2.66
2398 2466 3.071023 CCACTGTTCCAGAGTCCAAACTA 59.929 47.826 0.00 0.00 35.28 2.24
2399 2467 4.310769 CACTGTTCCAGAGTCCAAACTAG 58.689 47.826 0.00 0.00 35.28 2.57
2400 2468 3.325135 ACTGTTCCAGAGTCCAAACTAGG 59.675 47.826 0.00 0.00 35.28 3.02
2401 2469 3.578716 CTGTTCCAGAGTCCAAACTAGGA 59.421 47.826 0.00 0.00 37.77 2.94
2402 2470 3.578716 TGTTCCAGAGTCCAAACTAGGAG 59.421 47.826 0.00 0.00 39.57 3.69
2403 2471 2.180276 TCCAGAGTCCAAACTAGGAGC 58.820 52.381 0.00 0.00 38.64 4.70
2404 2472 1.902508 CCAGAGTCCAAACTAGGAGCA 59.097 52.381 0.00 0.00 38.64 4.26
2405 2473 2.093764 CCAGAGTCCAAACTAGGAGCAG 60.094 54.545 0.00 0.00 38.64 4.24
2406 2474 1.552792 AGAGTCCAAACTAGGAGCAGC 59.447 52.381 0.00 0.00 38.64 5.25
2407 2475 0.615850 AGTCCAAACTAGGAGCAGCC 59.384 55.000 0.00 0.00 38.64 4.85
2408 2476 0.741221 GTCCAAACTAGGAGCAGCCG 60.741 60.000 0.00 0.00 43.43 5.52
2409 2477 0.902984 TCCAAACTAGGAGCAGCCGA 60.903 55.000 0.00 0.00 43.43 5.54
2410 2478 0.460987 CCAAACTAGGAGCAGCCGAG 60.461 60.000 0.00 4.58 44.25 4.63
2411 2479 1.086634 CAAACTAGGAGCAGCCGAGC 61.087 60.000 5.81 0.00 42.63 5.03
2412 2480 1.544825 AAACTAGGAGCAGCCGAGCA 61.545 55.000 5.81 0.00 42.63 4.26
2413 2481 1.954362 AACTAGGAGCAGCCGAGCAG 61.954 60.000 5.81 0.00 42.63 4.24
2414 2482 3.149338 CTAGGAGCAGCCGAGCAGG 62.149 68.421 0.00 0.00 43.43 4.85
2415 2483 3.662117 TAGGAGCAGCCGAGCAGGA 62.662 63.158 2.12 0.00 45.00 3.86
2416 2484 4.527583 GGAGCAGCCGAGCAGGAG 62.528 72.222 2.12 0.00 45.00 3.69
2417 2485 4.527583 GAGCAGCCGAGCAGGAGG 62.528 72.222 2.12 0.00 45.00 4.30
2419 2487 4.828925 GCAGCCGAGCAGGAGGAC 62.829 72.222 2.12 0.00 45.00 3.85
2420 2488 4.154347 CAGCCGAGCAGGAGGACC 62.154 72.222 2.12 0.00 45.00 4.46
2421 2489 4.704103 AGCCGAGCAGGAGGACCA 62.704 66.667 2.12 0.00 45.00 4.02
2422 2490 3.706373 GCCGAGCAGGAGGACCAA 61.706 66.667 2.12 0.00 45.00 3.67
2423 2491 2.581354 CCGAGCAGGAGGACCAAG 59.419 66.667 0.00 0.00 45.00 3.61
2424 2492 1.984570 CCGAGCAGGAGGACCAAGA 60.985 63.158 0.00 0.00 45.00 3.02
2425 2493 1.216710 CGAGCAGGAGGACCAAGAC 59.783 63.158 0.00 0.00 38.94 3.01
2426 2494 1.216710 GAGCAGGAGGACCAAGACG 59.783 63.158 0.00 0.00 38.94 4.18
2427 2495 2.435059 GCAGGAGGACCAAGACGC 60.435 66.667 0.00 0.00 38.94 5.19
2428 2496 2.266055 CAGGAGGACCAAGACGCC 59.734 66.667 0.00 0.00 38.94 5.68
2429 2497 3.003763 AGGAGGACCAAGACGCCC 61.004 66.667 0.00 0.00 38.94 6.13
2430 2498 4.452733 GGAGGACCAAGACGCCCG 62.453 72.222 0.00 0.00 35.97 6.13
2431 2499 3.379445 GAGGACCAAGACGCCCGA 61.379 66.667 0.00 0.00 0.00 5.14
2432 2500 2.920912 AGGACCAAGACGCCCGAA 60.921 61.111 0.00 0.00 0.00 4.30
2433 2501 2.434359 GGACCAAGACGCCCGAAG 60.434 66.667 0.00 0.00 0.00 3.79
2449 2517 3.868757 CGAAGGTCACCTCTGATTACA 57.131 47.619 0.00 0.00 30.89 2.41
2450 2518 3.512680 CGAAGGTCACCTCTGATTACAC 58.487 50.000 0.00 0.00 30.89 2.90
2451 2519 3.056821 CGAAGGTCACCTCTGATTACACA 60.057 47.826 0.00 0.00 30.89 3.72
2452 2520 4.382040 CGAAGGTCACCTCTGATTACACAT 60.382 45.833 0.00 0.00 30.89 3.21
2453 2521 5.491982 GAAGGTCACCTCTGATTACACATT 58.508 41.667 0.00 0.00 30.89 2.71
2454 2522 5.505181 AGGTCACCTCTGATTACACATTT 57.495 39.130 0.00 0.00 0.00 2.32
2455 2523 5.880901 AGGTCACCTCTGATTACACATTTT 58.119 37.500 0.00 0.00 0.00 1.82
2456 2524 6.306987 AGGTCACCTCTGATTACACATTTTT 58.693 36.000 0.00 0.00 0.00 1.94
2482 2550 9.639563 TTATCTATTGATTGGTGCCTTTATTGA 57.360 29.630 0.00 0.00 34.32 2.57
2483 2551 8.716674 ATCTATTGATTGGTGCCTTTATTGAT 57.283 30.769 0.00 0.00 0.00 2.57
2484 2552 9.812347 ATCTATTGATTGGTGCCTTTATTGATA 57.188 29.630 0.00 0.00 0.00 2.15
2485 2553 9.812347 TCTATTGATTGGTGCCTTTATTGATAT 57.188 29.630 0.00 0.00 0.00 1.63
2519 2587 9.687210 ATTGTTTTAATTTCTTAGAAACCCGAC 57.313 29.630 9.77 6.38 31.11 4.79
2520 2588 8.223177 TGTTTTAATTTCTTAGAAACCCGACA 57.777 30.769 9.77 8.61 31.11 4.35
2521 2589 8.684520 TGTTTTAATTTCTTAGAAACCCGACAA 58.315 29.630 9.77 0.00 31.11 3.18
2522 2590 8.961092 GTTTTAATTTCTTAGAAACCCGACAAC 58.039 33.333 9.77 5.36 0.00 3.32
2523 2591 5.700722 AATTTCTTAGAAACCCGACAACC 57.299 39.130 9.77 0.00 0.00 3.77
2524 2592 2.443887 TCTTAGAAACCCGACAACCG 57.556 50.000 0.00 0.00 38.18 4.44
2525 2593 1.962807 TCTTAGAAACCCGACAACCGA 59.037 47.619 0.00 0.00 41.76 4.69
2526 2594 2.364970 TCTTAGAAACCCGACAACCGAA 59.635 45.455 0.00 0.00 41.76 4.30
2527 2595 3.007182 TCTTAGAAACCCGACAACCGAAT 59.993 43.478 0.00 0.00 41.76 3.34
2528 2596 2.265589 AGAAACCCGACAACCGAATT 57.734 45.000 0.00 0.00 41.76 2.17
2529 2597 1.877443 AGAAACCCGACAACCGAATTG 59.123 47.619 0.00 0.00 44.60 2.32
2530 2598 0.955905 AAACCCGACAACCGAATTGG 59.044 50.000 4.67 0.00 43.20 3.16
2531 2599 1.520600 AACCCGACAACCGAATTGGC 61.521 55.000 4.67 0.37 43.74 4.52
2539 2607 3.192922 CCGAATTGGCGGTCCGAC 61.193 66.667 17.49 14.47 46.07 4.79
2540 2608 3.192922 CGAATTGGCGGTCCGACC 61.193 66.667 16.33 15.76 31.60 4.79
2550 2618 2.543578 GGTCCGACCGGTAAAAACC 58.456 57.895 7.34 9.75 36.47 3.27
2551 2619 0.035317 GGTCCGACCGGTAAAAACCT 59.965 55.000 7.34 0.00 36.47 3.50
2552 2620 1.150827 GTCCGACCGGTAAAAACCTG 58.849 55.000 7.34 0.00 36.47 4.00
2553 2621 1.047002 TCCGACCGGTAAAAACCTGA 58.953 50.000 7.34 0.00 36.47 3.86
2554 2622 1.415659 TCCGACCGGTAAAAACCTGAA 59.584 47.619 7.34 0.00 36.47 3.02
2555 2623 1.532437 CCGACCGGTAAAAACCTGAAC 59.468 52.381 7.34 0.00 0.00 3.18
2556 2624 2.211806 CGACCGGTAAAAACCTGAACA 58.788 47.619 7.34 0.00 0.00 3.18
2557 2625 2.613133 CGACCGGTAAAAACCTGAACAA 59.387 45.455 7.34 0.00 0.00 2.83
2558 2626 3.303526 CGACCGGTAAAAACCTGAACAAG 60.304 47.826 7.34 0.00 0.00 3.16
2559 2627 2.359848 ACCGGTAAAAACCTGAACAAGC 59.640 45.455 4.49 0.00 0.00 4.01
2560 2628 2.359531 CCGGTAAAAACCTGAACAAGCA 59.640 45.455 0.00 0.00 0.00 3.91
2561 2629 3.181485 CCGGTAAAAACCTGAACAAGCAA 60.181 43.478 0.00 0.00 0.00 3.91
2562 2630 3.794564 CGGTAAAAACCTGAACAAGCAAC 59.205 43.478 0.00 0.00 0.00 4.17
2563 2631 4.116961 GGTAAAAACCTGAACAAGCAACC 58.883 43.478 0.00 0.00 0.00 3.77
2564 2632 4.142026 GGTAAAAACCTGAACAAGCAACCT 60.142 41.667 0.00 0.00 0.00 3.50
2565 2633 3.525268 AAAACCTGAACAAGCAACCTG 57.475 42.857 0.00 0.00 0.00 4.00
2566 2634 1.402787 AACCTGAACAAGCAACCTGG 58.597 50.000 0.00 0.00 0.00 4.45
2567 2635 0.258774 ACCTGAACAAGCAACCTGGT 59.741 50.000 0.00 0.00 0.00 4.00
2568 2636 1.341976 ACCTGAACAAGCAACCTGGTT 60.342 47.619 6.18 6.18 37.94 3.67
2570 2638 3.845625 GAACAAGCAACCTGGTTCG 57.154 52.632 9.62 6.86 41.01 3.95
2571 2639 1.305201 GAACAAGCAACCTGGTTCGA 58.695 50.000 9.62 0.00 41.01 3.71
2572 2640 1.880027 GAACAAGCAACCTGGTTCGAT 59.120 47.619 9.62 1.50 41.01 3.59
2573 2641 1.238439 ACAAGCAACCTGGTTCGATG 58.762 50.000 9.62 10.76 35.69 3.84
2574 2642 1.202758 ACAAGCAACCTGGTTCGATGA 60.203 47.619 9.62 0.00 35.69 2.92
2575 2643 1.197721 CAAGCAACCTGGTTCGATGAC 59.802 52.381 9.62 0.00 35.69 3.06
2576 2644 0.687354 AGCAACCTGGTTCGATGACT 59.313 50.000 9.62 0.00 0.00 3.41
2577 2645 0.798776 GCAACCTGGTTCGATGACTG 59.201 55.000 9.62 0.00 0.00 3.51
2578 2646 1.442769 CAACCTGGTTCGATGACTGG 58.557 55.000 9.62 0.00 0.00 4.00
2579 2647 1.056660 AACCTGGTTCGATGACTGGT 58.943 50.000 6.18 7.09 0.00 4.00
2580 2648 1.056660 ACCTGGTTCGATGACTGGTT 58.943 50.000 0.00 0.00 0.00 3.67
2581 2649 1.002087 ACCTGGTTCGATGACTGGTTC 59.998 52.381 0.00 0.00 0.00 3.62
2582 2650 1.001974 CCTGGTTCGATGACTGGTTCA 59.998 52.381 0.00 0.00 39.11 3.18
2583 2651 2.549992 CCTGGTTCGATGACTGGTTCAA 60.550 50.000 0.00 0.00 37.92 2.69
2584 2652 2.480419 CTGGTTCGATGACTGGTTCAAC 59.520 50.000 0.00 0.00 37.92 3.18
2585 2653 2.104111 TGGTTCGATGACTGGTTCAACT 59.896 45.455 0.00 0.00 37.92 3.16
2586 2654 3.139077 GGTTCGATGACTGGTTCAACTT 58.861 45.455 0.00 0.00 37.92 2.66
2587 2655 3.564225 GGTTCGATGACTGGTTCAACTTT 59.436 43.478 0.00 0.00 37.92 2.66
2588 2656 4.036380 GGTTCGATGACTGGTTCAACTTTT 59.964 41.667 0.00 0.00 37.92 2.27
2589 2657 5.205565 GTTCGATGACTGGTTCAACTTTTC 58.794 41.667 0.00 0.00 37.92 2.29
2590 2658 4.447290 TCGATGACTGGTTCAACTTTTCA 58.553 39.130 0.00 0.00 37.92 2.69
2591 2659 4.878971 TCGATGACTGGTTCAACTTTTCAA 59.121 37.500 0.00 0.00 37.92 2.69
2592 2660 5.355630 TCGATGACTGGTTCAACTTTTCAAA 59.644 36.000 0.00 0.00 37.92 2.69
2593 2661 5.455525 CGATGACTGGTTCAACTTTTCAAAC 59.544 40.000 0.00 0.00 37.92 2.93
2594 2662 5.975693 TGACTGGTTCAACTTTTCAAACT 57.024 34.783 0.00 0.00 0.00 2.66
2595 2663 7.466725 CGATGACTGGTTCAACTTTTCAAACTA 60.467 37.037 0.00 0.00 37.92 2.24
2596 2664 7.639113 TGACTGGTTCAACTTTTCAAACTAT 57.361 32.000 0.00 0.00 0.00 2.12
2597 2665 8.740123 TGACTGGTTCAACTTTTCAAACTATA 57.260 30.769 0.00 0.00 0.00 1.31
2598 2666 9.349713 TGACTGGTTCAACTTTTCAAACTATAT 57.650 29.630 0.00 0.00 0.00 0.86
2599 2667 9.612620 GACTGGTTCAACTTTTCAAACTATATG 57.387 33.333 0.00 0.00 0.00 1.78
2600 2668 8.082242 ACTGGTTCAACTTTTCAAACTATATGC 58.918 33.333 0.00 0.00 0.00 3.14
2601 2669 7.375053 TGGTTCAACTTTTCAAACTATATGCC 58.625 34.615 0.00 0.00 0.00 4.40
2602 2670 7.232534 TGGTTCAACTTTTCAAACTATATGCCT 59.767 33.333 0.00 0.00 0.00 4.75
2603 2671 8.736244 GGTTCAACTTTTCAAACTATATGCCTA 58.264 33.333 0.00 0.00 0.00 3.93
2612 2680 7.996098 TCAAACTATATGCCTAAAATAGGGC 57.004 36.000 5.62 0.00 46.32 5.19
2621 2689 5.598416 GCCTAAAATAGGGCATGAAAAGT 57.402 39.130 0.00 0.00 46.32 2.66
2622 2690 5.351458 GCCTAAAATAGGGCATGAAAAGTG 58.649 41.667 0.00 0.00 46.32 3.16
2623 2691 5.682212 GCCTAAAATAGGGCATGAAAAGTGG 60.682 44.000 0.00 0.00 46.32 4.00
2624 2692 4.824479 AAAATAGGGCATGAAAAGTGGG 57.176 40.909 0.00 0.00 0.00 4.61
2625 2693 3.473113 AATAGGGCATGAAAAGTGGGT 57.527 42.857 0.00 0.00 0.00 4.51
2626 2694 2.214376 TAGGGCATGAAAAGTGGGTG 57.786 50.000 0.00 0.00 0.00 4.61
2627 2695 0.542702 AGGGCATGAAAAGTGGGTGG 60.543 55.000 0.00 0.00 0.00 4.61
2628 2696 0.541764 GGGCATGAAAAGTGGGTGGA 60.542 55.000 0.00 0.00 0.00 4.02
2629 2697 0.890683 GGCATGAAAAGTGGGTGGAG 59.109 55.000 0.00 0.00 0.00 3.86
2630 2698 1.547675 GGCATGAAAAGTGGGTGGAGA 60.548 52.381 0.00 0.00 0.00 3.71
2631 2699 2.238521 GCATGAAAAGTGGGTGGAGAA 58.761 47.619 0.00 0.00 0.00 2.87
2632 2700 2.627699 GCATGAAAAGTGGGTGGAGAAA 59.372 45.455 0.00 0.00 0.00 2.52
2633 2701 3.069443 GCATGAAAAGTGGGTGGAGAAAA 59.931 43.478 0.00 0.00 0.00 2.29
2634 2702 4.442753 GCATGAAAAGTGGGTGGAGAAAAA 60.443 41.667 0.00 0.00 0.00 1.94
2652 2720 2.990066 AAAATGGGCACAAAAACCGA 57.010 40.000 0.00 0.00 0.00 4.69
2653 2721 3.483808 AAAATGGGCACAAAAACCGAT 57.516 38.095 0.00 0.00 0.00 4.18
2654 2722 3.483808 AAATGGGCACAAAAACCGATT 57.516 38.095 0.00 0.00 36.09 3.34
2655 2723 3.483808 AATGGGCACAAAAACCGATTT 57.516 38.095 0.00 0.00 31.11 2.17
2656 2724 2.990066 TGGGCACAAAAACCGATTTT 57.010 40.000 0.00 0.00 41.93 1.82
2657 2725 3.268023 TGGGCACAAAAACCGATTTTT 57.732 38.095 0.00 0.00 46.68 1.94
2675 2743 2.748461 TTTTTCACGAGAAAGCACCG 57.252 45.000 8.04 0.00 44.03 4.94
2676 2744 1.658994 TTTTCACGAGAAAGCACCGT 58.341 45.000 8.04 0.00 44.03 4.83
2677 2745 1.214367 TTTCACGAGAAAGCACCGTC 58.786 50.000 3.76 0.00 38.76 4.79
2678 2746 0.387929 TTCACGAGAAAGCACCGTCT 59.612 50.000 0.00 0.00 33.96 4.18
2679 2747 0.039437 TCACGAGAAAGCACCGTCTC 60.039 55.000 0.00 0.00 37.51 3.36
2682 2750 3.491581 GAGAAAGCACCGTCTCGAA 57.508 52.632 0.00 0.00 31.55 3.71
2683 2751 1.061485 GAGAAAGCACCGTCTCGAAC 58.939 55.000 0.00 0.00 31.55 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.358737 CCGTGTCCTTCAGCACCC 60.359 66.667 0.00 0.00 32.40 4.61
108 119 1.079503 GCGACCAGATTCTCCACAAC 58.920 55.000 0.00 0.00 0.00 3.32
130 141 2.718563 AGCATGTGTGAGATCATTGCA 58.281 42.857 0.00 0.00 34.27 4.08
303 314 1.202891 GGTCTTGGTTAGGGCAACACT 60.203 52.381 0.00 0.00 39.04 3.55
314 325 0.401395 TCCAGGTGGAGGTCTTGGTT 60.401 55.000 0.00 0.00 39.78 3.67
315 326 1.128188 GTCCAGGTGGAGGTCTTGGT 61.128 60.000 0.00 0.00 46.49 3.67
347 358 1.202463 CCGAGAAAGCTCCATCGACAT 60.202 52.381 13.98 0.00 37.91 3.06
561 572 0.826062 CCCCCTTCATTGCCATGAAC 59.174 55.000 9.05 0.00 43.32 3.18
611 622 1.667724 GATGTTGAATCTCAGCCACCG 59.332 52.381 0.00 0.00 0.00 4.94
671 682 2.040278 TCTGCTACCCTGTTTTGCTCAT 59.960 45.455 0.00 0.00 0.00 2.90
769 781 4.416848 AGGGTTACAATCCAGAGGCAATAT 59.583 41.667 0.00 0.00 0.00 1.28
841 854 9.787532 GTTTGGATTTCAAATTGATCGATCTAA 57.212 29.630 25.02 17.32 45.79 2.10
909 925 6.461788 GGACTCGATCTAGGCTGTTTCTATTT 60.462 42.308 0.00 0.00 0.00 1.40
917 933 0.553819 AGGGACTCGATCTAGGCTGT 59.446 55.000 0.00 0.00 0.00 4.40
937 953 7.413657 CCAATTGGTAGTTGTTGGTATCTAACG 60.414 40.741 16.90 0.00 37.05 3.18
962 978 1.202486 TGCGATTCTTCCGTGGATACC 60.202 52.381 0.00 0.00 0.00 2.73
967 983 1.212616 GATCTGCGATTCTTCCGTGG 58.787 55.000 0.00 0.00 0.00 4.94
1025 1046 0.753262 GACGATGAGCCATACCCAGT 59.247 55.000 0.00 0.00 0.00 4.00
1182 1203 1.344763 CGGAAGGTGAGGTTGAACTCT 59.655 52.381 0.00 0.00 38.32 3.24
1218 1239 2.048597 CACACGGTGCGCCTAAGA 60.049 61.111 15.69 0.00 0.00 2.10
1327 1348 2.764547 CTCGTCCCTCCCCTTCCC 60.765 72.222 0.00 0.00 0.00 3.97
1528 1549 0.889994 TACAACGTATCGCACCTGGT 59.110 50.000 0.00 0.00 0.00 4.00
1599 1647 1.132332 TCTGGGGTACTTCTTGGGGAA 60.132 52.381 0.00 0.00 0.00 3.97
1600 1648 0.494551 TCTGGGGTACTTCTTGGGGA 59.505 55.000 0.00 0.00 0.00 4.81
1601 1649 1.596496 ATCTGGGGTACTTCTTGGGG 58.404 55.000 0.00 0.00 0.00 4.96
1602 1650 3.134804 CAGTATCTGGGGTACTTCTTGGG 59.865 52.174 0.00 0.00 30.24 4.12
1603 1651 3.432326 GCAGTATCTGGGGTACTTCTTGG 60.432 52.174 0.00 0.00 30.24 3.61
1604 1652 3.452627 AGCAGTATCTGGGGTACTTCTTG 59.547 47.826 0.00 0.00 30.24 3.02
1605 1653 3.452627 CAGCAGTATCTGGGGTACTTCTT 59.547 47.826 0.00 0.00 30.24 2.52
1606 1654 3.034635 CAGCAGTATCTGGGGTACTTCT 58.965 50.000 0.00 0.00 30.24 2.85
1607 1655 2.483889 GCAGCAGTATCTGGGGTACTTC 60.484 54.545 0.00 0.00 34.74 3.01
1608 1656 1.486726 GCAGCAGTATCTGGGGTACTT 59.513 52.381 0.00 0.00 34.74 2.24
1609 1657 1.123928 GCAGCAGTATCTGGGGTACT 58.876 55.000 0.00 0.00 34.74 2.73
1610 1658 1.123928 AGCAGCAGTATCTGGGGTAC 58.876 55.000 0.00 0.00 34.74 3.34
1611 1659 1.762957 GAAGCAGCAGTATCTGGGGTA 59.237 52.381 0.00 0.00 34.74 3.69
1612 1660 0.543749 GAAGCAGCAGTATCTGGGGT 59.456 55.000 0.00 0.00 34.74 4.95
1613 1661 0.179034 GGAAGCAGCAGTATCTGGGG 60.179 60.000 0.00 0.00 34.74 4.96
1614 1662 0.179034 GGGAAGCAGCAGTATCTGGG 60.179 60.000 0.00 0.00 34.74 4.45
1615 1663 0.179034 GGGGAAGCAGCAGTATCTGG 60.179 60.000 0.00 0.00 34.74 3.86
1616 1664 0.543277 TGGGGAAGCAGCAGTATCTG 59.457 55.000 0.00 0.00 37.15 2.90
1617 1665 1.211457 CTTGGGGAAGCAGCAGTATCT 59.789 52.381 0.00 0.00 0.00 1.98
1618 1666 1.673168 CTTGGGGAAGCAGCAGTATC 58.327 55.000 0.00 0.00 0.00 2.24
1619 1667 0.257039 CCTTGGGGAAGCAGCAGTAT 59.743 55.000 0.00 0.00 33.58 2.12
1620 1668 0.840288 TCCTTGGGGAAGCAGCAGTA 60.840 55.000 0.00 0.00 38.93 2.74
1621 1669 2.134630 CTCCTTGGGGAAGCAGCAGT 62.135 60.000 0.00 0.00 41.69 4.40
1622 1670 1.378250 CTCCTTGGGGAAGCAGCAG 60.378 63.158 0.00 0.00 41.69 4.24
1623 1671 0.840288 TACTCCTTGGGGAAGCAGCA 60.840 55.000 0.00 0.00 41.69 4.41
1624 1672 0.393132 GTACTCCTTGGGGAAGCAGC 60.393 60.000 0.00 0.00 41.69 5.25
1625 1673 1.208293 GAGTACTCCTTGGGGAAGCAG 59.792 57.143 12.13 0.00 41.69 4.24
1626 1674 1.276622 GAGTACTCCTTGGGGAAGCA 58.723 55.000 12.13 0.00 41.69 3.91
1627 1675 0.542333 GGAGTACTCCTTGGGGAAGC 59.458 60.000 31.12 3.83 46.16 3.86
1647 1695 2.758089 CGCAATGGCAGCTGAGTCC 61.758 63.158 20.43 10.15 41.24 3.85
1653 1701 1.601419 AAGCATTCGCAATGGCAGCT 61.601 50.000 9.81 0.00 42.27 4.24
1671 1719 3.349927 TCGTTCTTCCTATGGTCGAGAA 58.650 45.455 0.00 0.00 0.00 2.87
1676 1724 5.263968 TCTTGATCGTTCTTCCTATGGTC 57.736 43.478 0.00 0.00 0.00 4.02
1761 1821 9.752961 TGCGTAACTGTAAGAGCAATATAATAA 57.247 29.630 0.00 0.00 37.43 1.40
1762 1822 9.923143 ATGCGTAACTGTAAGAGCAATATAATA 57.077 29.630 4.73 0.00 37.25 0.98
1763 1823 8.833231 ATGCGTAACTGTAAGAGCAATATAAT 57.167 30.769 4.73 0.00 37.25 1.28
1764 1824 9.923143 ATATGCGTAACTGTAAGAGCAATATAA 57.077 29.630 0.00 0.00 37.25 0.98
1802 1862 5.106555 ACATGAACAAATAACAGAAGAGCGG 60.107 40.000 0.00 0.00 0.00 5.52
1804 1864 7.020010 CAGACATGAACAAATAACAGAAGAGC 58.980 38.462 0.00 0.00 0.00 4.09
1806 1866 8.450578 AACAGACATGAACAAATAACAGAAGA 57.549 30.769 0.00 0.00 0.00 2.87
1823 1883 8.873830 CGTCAATAACTCTTGATTAACAGACAT 58.126 33.333 0.00 0.00 37.47 3.06
1827 1887 8.467402 AGACGTCAATAACTCTTGATTAACAG 57.533 34.615 19.50 0.00 37.47 3.16
1840 1900 6.035758 GTCTGGATGGTAAAGACGTCAATAAC 59.964 42.308 19.50 13.03 31.75 1.89
1851 1911 5.006153 TGTGATACGTCTGGATGGTAAAG 57.994 43.478 0.00 0.00 0.00 1.85
1871 1931 7.476540 TGTATAGGTGACACATAAGAGTTGT 57.523 36.000 8.08 0.00 0.00 3.32
1897 1957 8.521176 TCTGATTAGTCGAGTAGCTTAGTTTTT 58.479 33.333 0.00 0.00 0.00 1.94
2050 2115 5.356190 TGACTTGGTGGTTAGTACGATCTAG 59.644 44.000 0.00 0.00 0.00 2.43
2057 2122 5.362263 TCAACTTGACTTGGTGGTTAGTAC 58.638 41.667 0.00 0.00 0.00 2.73
2058 2123 5.617528 TCAACTTGACTTGGTGGTTAGTA 57.382 39.130 0.00 0.00 0.00 1.82
2112 2177 1.340248 ACAATCTATCCCCGTAGTGCG 59.660 52.381 0.00 0.00 40.95 5.34
2117 2182 3.840991 ACTAGCACAATCTATCCCCGTA 58.159 45.455 0.00 0.00 0.00 4.02
2120 2185 6.613153 ATTCTACTAGCACAATCTATCCCC 57.387 41.667 0.00 0.00 0.00 4.81
2142 2207 3.181469 ACATACGCCGTCTGGAATGTAAT 60.181 43.478 7.55 0.00 34.67 1.89
2156 2224 0.179134 ACGCAAGAGAGACATACGCC 60.179 55.000 0.00 0.00 43.62 5.68
2173 2241 2.357009 TCTAGGTTTAGGCGCTCTTACG 59.643 50.000 7.64 0.00 0.00 3.18
2186 2254 0.177373 GGATCGCCGGTTCTAGGTTT 59.823 55.000 1.90 0.00 0.00 3.27
2187 2255 1.683418 GGGATCGCCGGTTCTAGGTT 61.683 60.000 1.90 0.00 33.83 3.50
2188 2256 2.132352 GGGATCGCCGGTTCTAGGT 61.132 63.158 1.90 0.00 33.83 3.08
2189 2257 1.682451 TTGGGATCGCCGGTTCTAGG 61.682 60.000 1.90 0.00 33.83 3.02
2190 2258 0.393077 ATTGGGATCGCCGGTTCTAG 59.607 55.000 1.90 0.00 33.83 2.43
2191 2259 0.105964 CATTGGGATCGCCGGTTCTA 59.894 55.000 1.90 0.00 33.83 2.10
2192 2260 1.153168 CATTGGGATCGCCGGTTCT 60.153 57.895 1.90 0.00 33.83 3.01
2193 2261 2.186826 CCATTGGGATCGCCGGTTC 61.187 63.158 1.90 0.00 35.59 3.62
2194 2262 2.124320 CCATTGGGATCGCCGGTT 60.124 61.111 1.90 0.00 35.59 4.44
2195 2263 2.886730 GAACCATTGGGATCGCCGGT 62.887 60.000 7.78 8.39 38.05 5.28
2196 2264 2.124320 AACCATTGGGATCGCCGG 60.124 61.111 7.78 0.00 38.05 6.13
2197 2265 0.748005 AAGAACCATTGGGATCGCCG 60.748 55.000 7.78 0.00 40.70 6.46
2198 2266 1.474330 AAAGAACCATTGGGATCGCC 58.526 50.000 7.78 0.12 40.70 5.54
2199 2267 3.694566 ACTTAAAGAACCATTGGGATCGC 59.305 43.478 7.78 2.14 40.70 4.58
2200 2268 4.438744 GCACTTAAAGAACCATTGGGATCG 60.439 45.833 7.78 0.00 40.70 3.69
2201 2269 4.462483 TGCACTTAAAGAACCATTGGGATC 59.538 41.667 7.78 5.20 36.27 3.36
2202 2270 4.415596 TGCACTTAAAGAACCATTGGGAT 58.584 39.130 7.78 0.00 38.05 3.85
2203 2271 3.826157 CTGCACTTAAAGAACCATTGGGA 59.174 43.478 7.78 0.00 38.05 4.37
2204 2272 3.573967 ACTGCACTTAAAGAACCATTGGG 59.426 43.478 7.78 0.00 41.29 4.12
2205 2273 4.549458 CACTGCACTTAAAGAACCATTGG 58.451 43.478 0.00 0.00 0.00 3.16
2206 2274 4.549458 CCACTGCACTTAAAGAACCATTG 58.451 43.478 0.00 0.00 0.00 2.82
2207 2275 3.573967 CCCACTGCACTTAAAGAACCATT 59.426 43.478 0.00 0.00 0.00 3.16
2208 2276 3.157087 CCCACTGCACTTAAAGAACCAT 58.843 45.455 0.00 0.00 0.00 3.55
2209 2277 2.582052 CCCACTGCACTTAAAGAACCA 58.418 47.619 0.00 0.00 0.00 3.67
2210 2278 1.269723 GCCCACTGCACTTAAAGAACC 59.730 52.381 0.00 0.00 40.77 3.62
2211 2279 1.269723 GGCCCACTGCACTTAAAGAAC 59.730 52.381 0.00 0.00 43.89 3.01
2212 2280 1.144913 AGGCCCACTGCACTTAAAGAA 59.855 47.619 0.00 0.00 43.89 2.52
2213 2281 0.771127 AGGCCCACTGCACTTAAAGA 59.229 50.000 0.00 0.00 43.89 2.52
2214 2282 1.541588 GAAGGCCCACTGCACTTAAAG 59.458 52.381 0.00 0.00 43.89 1.85
2215 2283 1.616159 GAAGGCCCACTGCACTTAAA 58.384 50.000 0.00 0.00 43.89 1.52
2216 2284 0.605319 CGAAGGCCCACTGCACTTAA 60.605 55.000 0.00 0.00 43.89 1.85
2217 2285 1.003839 CGAAGGCCCACTGCACTTA 60.004 57.895 0.00 0.00 43.89 2.24
2218 2286 2.281761 CGAAGGCCCACTGCACTT 60.282 61.111 0.00 0.00 43.89 3.16
2219 2287 3.241530 TCGAAGGCCCACTGCACT 61.242 61.111 0.00 0.00 43.89 4.40
2220 2288 2.743928 CTCGAAGGCCCACTGCAC 60.744 66.667 0.00 0.00 43.89 4.57
2221 2289 4.704833 GCTCGAAGGCCCACTGCA 62.705 66.667 0.00 0.00 43.89 4.41
2222 2290 4.704833 TGCTCGAAGGCCCACTGC 62.705 66.667 0.00 0.00 40.16 4.40
2223 2291 1.372087 GATTGCTCGAAGGCCCACTG 61.372 60.000 0.00 0.00 0.00 3.66
2224 2292 1.078143 GATTGCTCGAAGGCCCACT 60.078 57.895 0.00 0.00 0.00 4.00
2225 2293 3.502572 GATTGCTCGAAGGCCCAC 58.497 61.111 0.00 0.00 0.00 4.61
2234 2302 3.536158 TTTTTCCTGTTCGATTGCTCG 57.464 42.857 0.00 0.00 46.41 5.03
2251 2319 1.134310 ACAGAGGTTCGACCCGTTTTT 60.134 47.619 0.00 0.00 39.75 1.94
2252 2320 0.466963 ACAGAGGTTCGACCCGTTTT 59.533 50.000 0.00 0.00 39.75 2.43
2253 2321 0.466963 AACAGAGGTTCGACCCGTTT 59.533 50.000 0.00 0.00 39.75 3.60
2254 2322 0.249741 CAACAGAGGTTCGACCCGTT 60.250 55.000 0.00 0.00 39.75 4.44
2255 2323 1.111116 TCAACAGAGGTTCGACCCGT 61.111 55.000 0.00 0.00 39.75 5.28
2256 2324 0.666577 GTCAACAGAGGTTCGACCCG 60.667 60.000 0.00 0.00 39.75 5.28
2257 2325 0.320508 GGTCAACAGAGGTTCGACCC 60.321 60.000 13.47 0.00 39.75 4.46
2258 2326 0.666577 CGGTCAACAGAGGTTCGACC 60.667 60.000 14.02 14.02 42.25 4.79
2259 2327 1.282930 GCGGTCAACAGAGGTTCGAC 61.283 60.000 0.00 0.00 34.21 4.20
2260 2328 1.006571 GCGGTCAACAGAGGTTCGA 60.007 57.895 0.00 0.00 34.21 3.71
2261 2329 1.006102 AGCGGTCAACAGAGGTTCG 60.006 57.895 0.00 0.00 34.21 3.95
2262 2330 0.951040 CCAGCGGTCAACAGAGGTTC 60.951 60.000 0.00 0.00 34.21 3.62
2263 2331 1.071471 CCAGCGGTCAACAGAGGTT 59.929 57.895 0.00 0.00 37.87 3.50
2264 2332 2.743718 CCAGCGGTCAACAGAGGT 59.256 61.111 0.00 0.00 0.00 3.85
2265 2333 2.046892 CCCAGCGGTCAACAGAGG 60.047 66.667 0.00 0.00 0.00 3.69
2266 2334 2.046892 CCCCAGCGGTCAACAGAG 60.047 66.667 0.00 0.00 0.00 3.35
2267 2335 2.525629 TCCCCAGCGGTCAACAGA 60.526 61.111 0.00 0.00 0.00 3.41
2268 2336 2.046892 CTCCCCAGCGGTCAACAG 60.047 66.667 0.00 0.00 0.00 3.16
2269 2337 2.525629 TCTCCCCAGCGGTCAACA 60.526 61.111 0.00 0.00 0.00 3.33
2270 2338 2.266055 CTCTCCCCAGCGGTCAAC 59.734 66.667 0.00 0.00 0.00 3.18
2271 2339 3.003173 CCTCTCCCCAGCGGTCAA 61.003 66.667 0.00 0.00 0.00 3.18
2273 2341 4.779733 TCCCTCTCCCCAGCGGTC 62.780 72.222 0.00 0.00 0.00 4.79
2278 2346 2.760385 GACGGTCCCTCTCCCCAG 60.760 72.222 0.00 0.00 0.00 4.45
2279 2347 4.753662 CGACGGTCCCTCTCCCCA 62.754 72.222 1.91 0.00 0.00 4.96
2293 2361 2.102553 GTCTGACTAGGCGGCGAC 59.897 66.667 12.98 8.50 0.00 5.19
2294 2362 2.045242 AGTCTGACTAGGCGGCGA 60.045 61.111 12.98 0.00 32.48 5.54
2295 2363 2.103143 CAGTCTGACTAGGCGGCG 59.897 66.667 10.47 0.51 32.48 6.46
2296 2364 2.286127 GACCAGTCTGACTAGGCGGC 62.286 65.000 19.55 0.00 32.48 6.53
2297 2365 1.668101 GGACCAGTCTGACTAGGCGG 61.668 65.000 19.55 15.08 32.48 6.13
2298 2366 1.810532 GGACCAGTCTGACTAGGCG 59.189 63.158 19.55 6.17 32.48 5.52
2299 2367 0.966370 ACGGACCAGTCTGACTAGGC 60.966 60.000 19.55 12.19 39.24 3.93
2300 2368 2.015587 GTACGGACCAGTCTGACTAGG 58.984 57.143 10.47 15.61 39.24 3.02
2301 2369 2.708051 TGTACGGACCAGTCTGACTAG 58.292 52.381 10.47 5.79 39.24 2.57
2302 2370 2.816087 GTTGTACGGACCAGTCTGACTA 59.184 50.000 10.47 2.39 39.24 2.59
2303 2371 1.612463 GTTGTACGGACCAGTCTGACT 59.388 52.381 13.49 4.06 39.24 3.41
2304 2372 1.612463 AGTTGTACGGACCAGTCTGAC 59.388 52.381 13.49 0.00 39.24 3.51
2305 2373 1.991121 AGTTGTACGGACCAGTCTGA 58.009 50.000 13.49 0.00 39.24 3.27
2306 2374 2.673833 GAAGTTGTACGGACCAGTCTG 58.326 52.381 5.06 5.06 41.63 3.51
2307 2375 1.268899 CGAAGTTGTACGGACCAGTCT 59.731 52.381 0.00 0.00 0.00 3.24
2308 2376 1.267806 TCGAAGTTGTACGGACCAGTC 59.732 52.381 0.00 0.00 0.00 3.51
2309 2377 1.321474 TCGAAGTTGTACGGACCAGT 58.679 50.000 0.00 0.00 0.00 4.00
2310 2378 2.163815 AGATCGAAGTTGTACGGACCAG 59.836 50.000 0.00 0.00 0.00 4.00
2311 2379 2.163010 GAGATCGAAGTTGTACGGACCA 59.837 50.000 0.00 0.00 0.00 4.02
2312 2380 2.479219 GGAGATCGAAGTTGTACGGACC 60.479 54.545 0.00 0.00 0.00 4.46
2313 2381 2.479219 GGGAGATCGAAGTTGTACGGAC 60.479 54.545 0.00 0.00 0.00 4.79
2314 2382 1.747355 GGGAGATCGAAGTTGTACGGA 59.253 52.381 0.00 0.00 0.00 4.69
2315 2383 1.749634 AGGGAGATCGAAGTTGTACGG 59.250 52.381 0.00 0.00 0.00 4.02
2316 2384 2.223525 GGAGGGAGATCGAAGTTGTACG 60.224 54.545 0.00 0.00 0.00 3.67
2317 2385 2.223525 CGGAGGGAGATCGAAGTTGTAC 60.224 54.545 0.00 0.00 0.00 2.90
2318 2386 2.022195 CGGAGGGAGATCGAAGTTGTA 58.978 52.381 0.00 0.00 0.00 2.41
2319 2387 0.818296 CGGAGGGAGATCGAAGTTGT 59.182 55.000 0.00 0.00 0.00 3.32
2320 2388 0.528684 GCGGAGGGAGATCGAAGTTG 60.529 60.000 0.00 0.00 0.00 3.16
2321 2389 0.684805 AGCGGAGGGAGATCGAAGTT 60.685 55.000 0.00 0.00 0.00 2.66
2322 2390 1.076632 AGCGGAGGGAGATCGAAGT 60.077 57.895 0.00 0.00 0.00 3.01
2323 2391 1.657556 GAGCGGAGGGAGATCGAAG 59.342 63.158 0.00 0.00 0.00 3.79
2324 2392 1.828660 GGAGCGGAGGGAGATCGAA 60.829 63.158 0.00 0.00 0.00 3.71
2325 2393 2.203365 GGAGCGGAGGGAGATCGA 60.203 66.667 0.00 0.00 0.00 3.59
2326 2394 3.665226 CGGAGCGGAGGGAGATCG 61.665 72.222 0.00 0.00 0.00 3.69
2337 2405 0.953471 TGGTTGATTTGACCGGAGCG 60.953 55.000 9.46 0.00 40.13 5.03
2338 2406 1.200020 CTTGGTTGATTTGACCGGAGC 59.800 52.381 9.46 0.00 40.13 4.70
2339 2407 1.200020 GCTTGGTTGATTTGACCGGAG 59.800 52.381 9.46 0.00 40.13 4.63
2340 2408 1.202879 AGCTTGGTTGATTTGACCGGA 60.203 47.619 9.46 0.00 40.13 5.14
2341 2409 1.247567 AGCTTGGTTGATTTGACCGG 58.752 50.000 0.00 0.00 40.13 5.28
2342 2410 2.351738 GGAAGCTTGGTTGATTTGACCG 60.352 50.000 2.10 0.00 40.13 4.79
2343 2411 2.893489 AGGAAGCTTGGTTGATTTGACC 59.107 45.455 2.10 0.00 37.69 4.02
2344 2412 3.823304 AGAGGAAGCTTGGTTGATTTGAC 59.177 43.478 2.10 0.00 0.00 3.18
2345 2413 3.822735 CAGAGGAAGCTTGGTTGATTTGA 59.177 43.478 2.10 0.00 0.00 2.69
2346 2414 3.057033 CCAGAGGAAGCTTGGTTGATTTG 60.057 47.826 2.10 0.00 0.00 2.32
2347 2415 3.160269 CCAGAGGAAGCTTGGTTGATTT 58.840 45.455 2.10 0.00 0.00 2.17
2348 2416 2.108952 ACCAGAGGAAGCTTGGTTGATT 59.891 45.455 2.10 0.00 0.00 2.57
2349 2417 1.707427 ACCAGAGGAAGCTTGGTTGAT 59.293 47.619 2.10 0.00 0.00 2.57
2350 2418 1.140312 ACCAGAGGAAGCTTGGTTGA 58.860 50.000 2.10 0.00 0.00 3.18
2351 2419 1.986882 AACCAGAGGAAGCTTGGTTG 58.013 50.000 17.08 4.76 40.85 3.77
2352 2420 1.215423 ACAACCAGAGGAAGCTTGGTT 59.785 47.619 12.99 12.99 42.86 3.67
2353 2421 0.846693 ACAACCAGAGGAAGCTTGGT 59.153 50.000 2.10 1.41 0.00 3.67
2354 2422 1.072965 AGACAACCAGAGGAAGCTTGG 59.927 52.381 2.10 0.59 0.00 3.61
2355 2423 2.421619 GAGACAACCAGAGGAAGCTTG 58.578 52.381 2.10 0.00 0.00 4.01
2356 2424 1.349357 GGAGACAACCAGAGGAAGCTT 59.651 52.381 0.00 0.00 0.00 3.74
2357 2425 0.980423 GGAGACAACCAGAGGAAGCT 59.020 55.000 0.00 0.00 0.00 3.74
2358 2426 0.035915 GGGAGACAACCAGAGGAAGC 60.036 60.000 0.00 0.00 0.00 3.86
2359 2427 1.002544 GTGGGAGACAACCAGAGGAAG 59.997 57.143 0.00 0.00 39.00 3.46
2360 2428 1.056660 GTGGGAGACAACCAGAGGAA 58.943 55.000 0.00 0.00 39.00 3.36
2361 2429 0.191064 AGTGGGAGACAACCAGAGGA 59.809 55.000 0.00 0.00 39.00 3.71
2362 2430 0.322975 CAGTGGGAGACAACCAGAGG 59.677 60.000 0.00 0.00 39.00 3.69
2363 2431 1.051812 ACAGTGGGAGACAACCAGAG 58.948 55.000 0.00 0.00 39.00 3.35
2364 2432 1.416401 GAACAGTGGGAGACAACCAGA 59.584 52.381 0.00 0.00 39.00 3.86
2365 2433 1.543429 GGAACAGTGGGAGACAACCAG 60.543 57.143 0.00 0.00 39.00 4.00
2366 2434 0.472471 GGAACAGTGGGAGACAACCA 59.528 55.000 0.00 0.00 35.14 3.67
2367 2435 0.472471 TGGAACAGTGGGAGACAACC 59.528 55.000 0.00 0.00 0.00 3.77
2378 2446 6.739675 CTCCTAGTTTGGACTCTGGAACAGT 61.740 48.000 0.00 0.00 43.65 3.55
2379 2447 4.322349 CTCCTAGTTTGGACTCTGGAACAG 60.322 50.000 0.00 0.00 44.19 3.16
2380 2448 3.578716 CTCCTAGTTTGGACTCTGGAACA 59.421 47.826 0.00 0.00 37.84 3.18
2381 2449 3.617775 GCTCCTAGTTTGGACTCTGGAAC 60.618 52.174 0.00 0.00 37.84 3.62
2382 2450 2.567615 GCTCCTAGTTTGGACTCTGGAA 59.432 50.000 0.00 0.00 37.84 3.53
2383 2451 2.180276 GCTCCTAGTTTGGACTCTGGA 58.820 52.381 0.00 0.00 36.75 3.86
2384 2452 1.902508 TGCTCCTAGTTTGGACTCTGG 59.097 52.381 0.00 0.00 37.33 3.86
2385 2453 2.676463 GCTGCTCCTAGTTTGGACTCTG 60.676 54.545 0.00 0.00 37.33 3.35
2386 2454 1.552792 GCTGCTCCTAGTTTGGACTCT 59.447 52.381 0.00 0.00 37.33 3.24
2387 2455 1.406205 GGCTGCTCCTAGTTTGGACTC 60.406 57.143 0.00 0.00 37.33 3.36
2388 2456 0.615850 GGCTGCTCCTAGTTTGGACT 59.384 55.000 0.00 0.00 39.97 3.85
2389 2457 0.741221 CGGCTGCTCCTAGTTTGGAC 60.741 60.000 0.00 0.00 31.94 4.02
2390 2458 0.902984 TCGGCTGCTCCTAGTTTGGA 60.903 55.000 0.00 0.00 34.52 3.53
2391 2459 0.460987 CTCGGCTGCTCCTAGTTTGG 60.461 60.000 0.00 0.00 0.00 3.28
2392 2460 1.086634 GCTCGGCTGCTCCTAGTTTG 61.087 60.000 0.00 0.00 30.68 2.93
2393 2461 1.219393 GCTCGGCTGCTCCTAGTTT 59.781 57.895 0.00 0.00 30.68 2.66
2394 2462 1.954362 CTGCTCGGCTGCTCCTAGTT 61.954 60.000 0.00 0.00 30.68 2.24
2395 2463 2.363018 TGCTCGGCTGCTCCTAGT 60.363 61.111 0.00 0.00 30.68 2.57
2396 2464 2.416678 CTGCTCGGCTGCTCCTAG 59.583 66.667 0.00 0.00 0.00 3.02
2397 2465 3.150335 CCTGCTCGGCTGCTCCTA 61.150 66.667 0.00 0.00 0.00 2.94
2399 2467 4.527583 CTCCTGCTCGGCTGCTCC 62.528 72.222 0.00 0.00 0.00 4.70
2400 2468 4.527583 CCTCCTGCTCGGCTGCTC 62.528 72.222 0.00 0.00 0.00 4.26
2402 2470 4.828925 GTCCTCCTGCTCGGCTGC 62.829 72.222 0.00 0.00 0.00 5.25
2403 2471 4.154347 GGTCCTCCTGCTCGGCTG 62.154 72.222 0.00 0.00 0.00 4.85
2404 2472 4.704103 TGGTCCTCCTGCTCGGCT 62.704 66.667 0.00 0.00 34.23 5.52
2405 2473 3.672295 CTTGGTCCTCCTGCTCGGC 62.672 68.421 0.00 0.00 34.23 5.54
2406 2474 1.984570 TCTTGGTCCTCCTGCTCGG 60.985 63.158 0.00 0.00 34.23 4.63
2407 2475 1.216710 GTCTTGGTCCTCCTGCTCG 59.783 63.158 0.00 0.00 34.23 5.03
2408 2476 1.216710 CGTCTTGGTCCTCCTGCTC 59.783 63.158 0.00 0.00 34.23 4.26
2409 2477 2.948720 GCGTCTTGGTCCTCCTGCT 61.949 63.158 0.00 0.00 34.23 4.24
2410 2478 2.435059 GCGTCTTGGTCCTCCTGC 60.435 66.667 0.00 0.00 34.23 4.85
2411 2479 2.266055 GGCGTCTTGGTCCTCCTG 59.734 66.667 0.00 0.00 34.23 3.86
2412 2480 3.003763 GGGCGTCTTGGTCCTCCT 61.004 66.667 0.00 0.00 34.23 3.69
2413 2481 4.452733 CGGGCGTCTTGGTCCTCC 62.453 72.222 0.00 0.00 0.00 4.30
2414 2482 2.837371 CTTCGGGCGTCTTGGTCCTC 62.837 65.000 0.00 0.00 0.00 3.71
2415 2483 2.920912 TTCGGGCGTCTTGGTCCT 60.921 61.111 0.00 0.00 0.00 3.85
2416 2484 2.434359 CTTCGGGCGTCTTGGTCC 60.434 66.667 0.00 0.00 0.00 4.46
2417 2485 2.434359 CCTTCGGGCGTCTTGGTC 60.434 66.667 0.00 0.00 0.00 4.02
2418 2486 3.236003 GACCTTCGGGCGTCTTGGT 62.236 63.158 0.00 0.00 39.10 3.67
2419 2487 2.434359 GACCTTCGGGCGTCTTGG 60.434 66.667 0.00 0.00 39.10 3.61
2420 2488 2.027625 GTGACCTTCGGGCGTCTTG 61.028 63.158 0.00 0.00 39.10 3.02
2421 2489 2.342648 GTGACCTTCGGGCGTCTT 59.657 61.111 0.00 0.00 39.10 3.01
2422 2490 3.692406 GGTGACCTTCGGGCGTCT 61.692 66.667 0.00 0.00 39.10 4.18
2423 2491 3.644399 GAGGTGACCTTCGGGCGTC 62.644 68.421 5.21 0.00 39.10 5.19
2424 2492 3.692406 GAGGTGACCTTCGGGCGT 61.692 66.667 5.21 0.00 39.10 5.68
2425 2493 3.382832 AGAGGTGACCTTCGGGCG 61.383 66.667 5.21 0.00 39.10 6.13
2426 2494 1.617947 ATCAGAGGTGACCTTCGGGC 61.618 60.000 5.21 0.00 39.10 6.13
2427 2495 0.905357 AATCAGAGGTGACCTTCGGG 59.095 55.000 5.21 0.00 34.75 5.14
2428 2496 2.496070 TGTAATCAGAGGTGACCTTCGG 59.504 50.000 5.21 0.12 34.75 4.30
2429 2497 3.056821 TGTGTAATCAGAGGTGACCTTCG 60.057 47.826 5.21 0.00 34.75 3.79
2430 2498 4.537135 TGTGTAATCAGAGGTGACCTTC 57.463 45.455 5.21 0.00 34.75 3.46
2431 2499 5.505181 AATGTGTAATCAGAGGTGACCTT 57.495 39.130 5.21 0.00 34.75 3.50
2432 2500 5.505181 AAATGTGTAATCAGAGGTGACCT 57.495 39.130 2.41 2.41 34.75 3.85
2433 2501 6.575162 AAAAATGTGTAATCAGAGGTGACC 57.425 37.500 0.00 0.00 34.75 4.02
2456 2524 9.639563 TCAATAAAGGCACCAATCAATAGATAA 57.360 29.630 0.00 0.00 33.08 1.75
2457 2525 9.812347 ATCAATAAAGGCACCAATCAATAGATA 57.188 29.630 0.00 0.00 33.08 1.98
2458 2526 8.716674 ATCAATAAAGGCACCAATCAATAGAT 57.283 30.769 0.00 0.00 35.53 1.98
2459 2527 9.812347 ATATCAATAAAGGCACCAATCAATAGA 57.188 29.630 0.00 0.00 0.00 1.98
2493 2561 9.687210 GTCGGGTTTCTAAGAAATTAAAACAAT 57.313 29.630 0.00 0.00 32.75 2.71
2494 2562 8.684520 TGTCGGGTTTCTAAGAAATTAAAACAA 58.315 29.630 0.00 0.00 32.75 2.83
2495 2563 8.223177 TGTCGGGTTTCTAAGAAATTAAAACA 57.777 30.769 0.00 0.00 32.75 2.83
2496 2564 8.961092 GTTGTCGGGTTTCTAAGAAATTAAAAC 58.039 33.333 0.00 0.00 0.00 2.43
2497 2565 8.136800 GGTTGTCGGGTTTCTAAGAAATTAAAA 58.863 33.333 0.00 0.00 0.00 1.52
2498 2566 7.520292 CGGTTGTCGGGTTTCTAAGAAATTAAA 60.520 37.037 0.00 0.00 34.75 1.52
2499 2567 6.073112 CGGTTGTCGGGTTTCTAAGAAATTAA 60.073 38.462 0.00 0.00 34.75 1.40
2500 2568 5.409214 CGGTTGTCGGGTTTCTAAGAAATTA 59.591 40.000 0.00 0.00 34.75 1.40
2501 2569 4.214758 CGGTTGTCGGGTTTCTAAGAAATT 59.785 41.667 0.00 0.00 34.75 1.82
2502 2570 3.749609 CGGTTGTCGGGTTTCTAAGAAAT 59.250 43.478 0.00 0.00 34.75 2.17
2503 2571 3.132925 CGGTTGTCGGGTTTCTAAGAAA 58.867 45.455 0.00 0.00 34.75 2.52
2504 2572 2.364970 TCGGTTGTCGGGTTTCTAAGAA 59.635 45.455 0.00 0.00 39.77 2.52
2505 2573 1.962807 TCGGTTGTCGGGTTTCTAAGA 59.037 47.619 0.00 0.00 39.77 2.10
2506 2574 2.443887 TCGGTTGTCGGGTTTCTAAG 57.556 50.000 0.00 0.00 39.77 2.18
2507 2575 2.906691 TTCGGTTGTCGGGTTTCTAA 57.093 45.000 0.00 0.00 39.77 2.10
2508 2576 3.068560 CAATTCGGTTGTCGGGTTTCTA 58.931 45.455 0.00 0.00 39.77 2.10
2509 2577 1.877443 CAATTCGGTTGTCGGGTTTCT 59.123 47.619 0.00 0.00 39.77 2.52
2510 2578 1.068816 CCAATTCGGTTGTCGGGTTTC 60.069 52.381 1.78 0.00 39.77 2.78
2511 2579 0.955905 CCAATTCGGTTGTCGGGTTT 59.044 50.000 1.78 0.00 39.77 3.27
2512 2580 1.520600 GCCAATTCGGTTGTCGGGTT 61.521 55.000 1.78 0.00 39.77 4.11
2513 2581 1.969589 GCCAATTCGGTTGTCGGGT 60.970 57.895 1.78 0.00 39.77 5.28
2514 2582 2.874751 GCCAATTCGGTTGTCGGG 59.125 61.111 1.78 0.00 39.77 5.14
2515 2583 2.478746 CGCCAATTCGGTTGTCGG 59.521 61.111 0.00 0.00 35.68 4.79
2516 2584 2.478746 CCGCCAATTCGGTTGTCG 59.521 61.111 0.00 0.00 44.18 4.35
2523 2591 3.192922 GGTCGGACCGCCAATTCG 61.193 66.667 12.12 0.00 0.00 3.34
2532 2600 0.035317 AGGTTTTTACCGGTCGGACC 59.965 55.000 12.40 17.38 38.96 4.46
2533 2601 1.150827 CAGGTTTTTACCGGTCGGAC 58.849 55.000 12.40 6.03 38.96 4.79
2534 2602 1.047002 TCAGGTTTTTACCGGTCGGA 58.953 50.000 12.40 0.00 38.96 4.55
2535 2603 1.532437 GTTCAGGTTTTTACCGGTCGG 59.468 52.381 12.40 7.97 42.03 4.79
2536 2604 2.211806 TGTTCAGGTTTTTACCGGTCG 58.788 47.619 12.40 0.00 34.28 4.79
2537 2605 3.549423 GCTTGTTCAGGTTTTTACCGGTC 60.549 47.826 12.40 0.00 34.28 4.79
2538 2606 2.359848 GCTTGTTCAGGTTTTTACCGGT 59.640 45.455 13.98 13.98 34.28 5.28
2539 2607 2.359531 TGCTTGTTCAGGTTTTTACCGG 59.640 45.455 0.00 0.00 34.28 5.28
2540 2608 3.701532 TGCTTGTTCAGGTTTTTACCG 57.298 42.857 0.00 0.00 34.28 4.02
2541 2609 4.116961 GGTTGCTTGTTCAGGTTTTTACC 58.883 43.478 0.00 0.00 0.00 2.85
2542 2610 4.803613 CAGGTTGCTTGTTCAGGTTTTTAC 59.196 41.667 0.00 0.00 0.00 2.01
2543 2611 4.142049 CCAGGTTGCTTGTTCAGGTTTTTA 60.142 41.667 0.00 0.00 0.00 1.52
2544 2612 3.369366 CCAGGTTGCTTGTTCAGGTTTTT 60.369 43.478 0.00 0.00 0.00 1.94
2545 2613 2.168313 CCAGGTTGCTTGTTCAGGTTTT 59.832 45.455 0.00 0.00 0.00 2.43
2546 2614 1.756538 CCAGGTTGCTTGTTCAGGTTT 59.243 47.619 0.00 0.00 0.00 3.27
2547 2615 1.341976 ACCAGGTTGCTTGTTCAGGTT 60.342 47.619 0.00 0.00 0.00 3.50
2548 2616 0.258774 ACCAGGTTGCTTGTTCAGGT 59.741 50.000 0.00 0.00 0.00 4.00
2549 2617 1.338020 GAACCAGGTTGCTTGTTCAGG 59.662 52.381 10.47 0.00 37.60 3.86
2550 2618 1.002468 CGAACCAGGTTGCTTGTTCAG 60.002 52.381 10.47 0.00 37.53 3.02
2551 2619 1.021202 CGAACCAGGTTGCTTGTTCA 58.979 50.000 10.47 0.00 37.53 3.18
2552 2620 1.305201 TCGAACCAGGTTGCTTGTTC 58.695 50.000 10.47 0.00 35.03 3.18
2553 2621 1.608590 CATCGAACCAGGTTGCTTGTT 59.391 47.619 10.47 0.00 0.00 2.83
2554 2622 1.202758 TCATCGAACCAGGTTGCTTGT 60.203 47.619 10.47 0.00 0.00 3.16
2555 2623 1.197721 GTCATCGAACCAGGTTGCTTG 59.802 52.381 10.47 4.15 0.00 4.01
2556 2624 1.072331 AGTCATCGAACCAGGTTGCTT 59.928 47.619 10.47 0.00 0.00 3.91
2557 2625 0.687354 AGTCATCGAACCAGGTTGCT 59.313 50.000 10.47 0.00 0.00 3.91
2558 2626 0.798776 CAGTCATCGAACCAGGTTGC 59.201 55.000 10.47 0.47 0.00 4.17
2559 2627 1.270839 ACCAGTCATCGAACCAGGTTG 60.271 52.381 10.47 2.38 0.00 3.77
2560 2628 1.056660 ACCAGTCATCGAACCAGGTT 58.943 50.000 3.79 3.79 0.00 3.50
2561 2629 1.002087 GAACCAGTCATCGAACCAGGT 59.998 52.381 0.00 0.00 31.51 4.00
2562 2630 1.001974 TGAACCAGTCATCGAACCAGG 59.998 52.381 0.00 0.00 0.00 4.45
2563 2631 2.455674 TGAACCAGTCATCGAACCAG 57.544 50.000 0.00 0.00 0.00 4.00
2564 2632 2.104111 AGTTGAACCAGTCATCGAACCA 59.896 45.455 0.00 0.00 35.70 3.67
2565 2633 2.767505 AGTTGAACCAGTCATCGAACC 58.232 47.619 0.00 0.00 35.70 3.62
2566 2634 4.813296 AAAGTTGAACCAGTCATCGAAC 57.187 40.909 0.00 0.00 35.70 3.95
2567 2635 4.878971 TGAAAAGTTGAACCAGTCATCGAA 59.121 37.500 0.00 0.00 35.70 3.71
2568 2636 4.447290 TGAAAAGTTGAACCAGTCATCGA 58.553 39.130 0.00 0.00 35.70 3.59
2569 2637 4.811555 TGAAAAGTTGAACCAGTCATCG 57.188 40.909 0.00 0.00 35.70 3.84
2570 2638 6.564328 AGTTTGAAAAGTTGAACCAGTCATC 58.436 36.000 0.00 0.00 35.70 2.92
2571 2639 6.530019 AGTTTGAAAAGTTGAACCAGTCAT 57.470 33.333 0.00 0.00 35.70 3.06
2572 2640 5.975693 AGTTTGAAAAGTTGAACCAGTCA 57.024 34.783 0.00 0.00 0.00 3.41
2573 2641 9.612620 CATATAGTTTGAAAAGTTGAACCAGTC 57.387 33.333 0.00 0.00 0.00 3.51
2574 2642 8.082242 GCATATAGTTTGAAAAGTTGAACCAGT 58.918 33.333 0.00 0.00 0.00 4.00
2575 2643 7.542130 GGCATATAGTTTGAAAAGTTGAACCAG 59.458 37.037 0.00 0.00 0.00 4.00
2576 2644 7.232534 AGGCATATAGTTTGAAAAGTTGAACCA 59.767 33.333 0.00 0.00 0.00 3.67
2577 2645 7.602753 AGGCATATAGTTTGAAAAGTTGAACC 58.397 34.615 0.00 0.00 0.00 3.62
2600 2668 5.163416 CCCACTTTTCATGCCCTATTTTAGG 60.163 44.000 0.00 0.00 45.81 2.69
2601 2669 5.422012 ACCCACTTTTCATGCCCTATTTTAG 59.578 40.000 0.00 0.00 0.00 1.85
2602 2670 5.186797 CACCCACTTTTCATGCCCTATTTTA 59.813 40.000 0.00 0.00 0.00 1.52
2603 2671 4.020307 CACCCACTTTTCATGCCCTATTTT 60.020 41.667 0.00 0.00 0.00 1.82
2604 2672 3.515104 CACCCACTTTTCATGCCCTATTT 59.485 43.478 0.00 0.00 0.00 1.40
2605 2673 3.099141 CACCCACTTTTCATGCCCTATT 58.901 45.455 0.00 0.00 0.00 1.73
2606 2674 2.624029 CCACCCACTTTTCATGCCCTAT 60.624 50.000 0.00 0.00 0.00 2.57
2607 2675 1.272425 CCACCCACTTTTCATGCCCTA 60.272 52.381 0.00 0.00 0.00 3.53
2608 2676 0.542702 CCACCCACTTTTCATGCCCT 60.543 55.000 0.00 0.00 0.00 5.19
2609 2677 0.541764 TCCACCCACTTTTCATGCCC 60.542 55.000 0.00 0.00 0.00 5.36
2610 2678 0.890683 CTCCACCCACTTTTCATGCC 59.109 55.000 0.00 0.00 0.00 4.40
2611 2679 1.909700 TCTCCACCCACTTTTCATGC 58.090 50.000 0.00 0.00 0.00 4.06
2612 2680 4.935352 TTTTCTCCACCCACTTTTCATG 57.065 40.909 0.00 0.00 0.00 3.07
2632 2700 3.268023 TCGGTTTTTGTGCCCATTTTT 57.732 38.095 0.00 0.00 0.00 1.94
2633 2701 2.990066 TCGGTTTTTGTGCCCATTTT 57.010 40.000 0.00 0.00 0.00 1.82
2634 2702 3.483808 AATCGGTTTTTGTGCCCATTT 57.516 38.095 0.00 0.00 0.00 2.32
2635 2703 3.483808 AAATCGGTTTTTGTGCCCATT 57.516 38.095 0.00 0.00 0.00 3.16
2636 2704 3.483808 AAAATCGGTTTTTGTGCCCAT 57.516 38.095 0.00 0.00 36.18 4.00
2637 2705 2.990066 AAAATCGGTTTTTGTGCCCA 57.010 40.000 0.00 0.00 36.18 5.36
2656 2724 2.011222 ACGGTGCTTTCTCGTGAAAAA 58.989 42.857 13.14 3.14 41.09 1.94
2657 2725 1.595794 GACGGTGCTTTCTCGTGAAAA 59.404 47.619 13.14 0.00 41.09 2.29
2658 2726 1.202486 AGACGGTGCTTTCTCGTGAAA 60.202 47.619 11.76 11.76 39.59 2.69
2659 2727 0.387929 AGACGGTGCTTTCTCGTGAA 59.612 50.000 0.00 0.00 37.25 3.18
2660 2728 0.039437 GAGACGGTGCTTTCTCGTGA 60.039 55.000 0.00 0.00 37.25 4.35
2661 2729 2.435741 GAGACGGTGCTTTCTCGTG 58.564 57.895 0.00 0.00 37.25 4.35
2662 2730 4.968197 GAGACGGTGCTTTCTCGT 57.032 55.556 0.00 0.00 39.99 4.18
2664 2732 1.061485 GTTCGAGACGGTGCTTTCTC 58.939 55.000 0.00 0.00 35.80 2.87
2665 2733 3.196613 GTTCGAGACGGTGCTTTCT 57.803 52.632 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.