Multiple sequence alignment - TraesCS6D01G393200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G393200 chr6D 100.000 3511 0 0 1 3511 467097984 467094474 0.000000e+00 6484.0
1 TraesCS6D01G393200 chr6D 100.000 1908 0 0 3819 5726 467094166 467092259 0.000000e+00 3524.0
2 TraesCS6D01G393200 chr6B 91.147 2937 171 40 627 3511 712273987 712271088 0.000000e+00 3901.0
3 TraesCS6D01G393200 chr6B 90.319 1601 108 26 3819 5387 712271057 712269472 0.000000e+00 2054.0
4 TraesCS6D01G393200 chr6B 91.061 660 43 6 2077 2723 712313886 712313230 0.000000e+00 878.0
5 TraesCS6D01G393200 chr6B 91.419 303 26 0 1066 1368 677498273 677497971 3.190000e-112 416.0
6 TraesCS6D01G393200 chr6B 88.889 108 9 3 2215 2320 712315394 712315288 4.660000e-26 130.0
7 TraesCS6D01G393200 chr6B 94.444 72 3 1 5621 5692 712269065 712268995 6.070000e-20 110.0
8 TraesCS6D01G393200 chr6B 84.762 105 10 5 57 155 18769791 18769895 3.650000e-17 100.0
9 TraesCS6D01G393200 chr6A 95.623 1051 39 7 3831 4878 613358368 613357322 0.000000e+00 1679.0
10 TraesCS6D01G393200 chr6A 83.821 1743 161 62 9 1682 613361565 613359875 0.000000e+00 1544.0
11 TraesCS6D01G393200 chr6A 78.500 1107 135 47 2467 3511 613359451 613358386 1.050000e-176 630.0
12 TraesCS6D01G393200 chr6A 91.272 401 33 2 2023 2421 613359850 613359450 3.900000e-151 545.0
13 TraesCS6D01G393200 chr6A 85.010 507 60 10 4999 5500 613357139 613356644 8.570000e-138 501.0
14 TraesCS6D01G393200 chr6A 94.083 169 8 2 4863 5029 613357306 613357138 7.360000e-64 255.0
15 TraesCS6D01G393200 chr6A 98.507 67 1 0 5627 5693 613356520 613356454 1.010000e-22 119.0
16 TraesCS6D01G393200 chrUn 76.893 1268 195 59 1976 3228 224651790 224650606 3.770000e-176 628.0
17 TraesCS6D01G393200 chr5D 95.018 281 8 1 1094 1368 41010920 41010640 2.450000e-118 436.0
18 TraesCS6D01G393200 chr5D 87.097 93 10 2 2291 2382 8029768 8029677 2.820000e-18 104.0
19 TraesCS6D01G393200 chr5B 90.429 303 29 0 1066 1368 606641215 606640913 3.210000e-107 399.0
20 TraesCS6D01G393200 chr7A 93.066 274 13 1 1101 1368 592018493 592018766 4.160000e-106 396.0
21 TraesCS6D01G393200 chr4B 90.345 290 27 1 1079 1368 549622224 549621936 4.190000e-101 379.0
22 TraesCS6D01G393200 chr4B 85.882 85 8 4 56 137 657241458 657241541 2.840000e-13 87.9
23 TraesCS6D01G393200 chr7B 91.941 273 17 2 1101 1368 493210480 493210752 1.510000e-100 377.0
24 TraesCS6D01G393200 chr2B 90.909 154 8 1 1221 1368 727306660 727306813 9.730000e-48 202.0
25 TraesCS6D01G393200 chr5A 90.909 77 7 0 1066 1142 515721985 515721909 2.820000e-18 104.0
26 TraesCS6D01G393200 chr5A 86.420 81 11 0 57 137 322833662 322833582 7.900000e-14 89.8
27 TraesCS6D01G393200 chr2A 89.286 84 6 2 57 137 214066640 214066557 1.020000e-17 102.0
28 TraesCS6D01G393200 chr2D 84.536 97 11 4 57 149 468174597 468174693 6.110000e-15 93.5
29 TraesCS6D01G393200 chr1D 83.495 103 10 7 54 149 397649445 397649343 7.900000e-14 89.8
30 TraesCS6D01G393200 chr1D 86.585 82 8 2 59 137 226471079 226470998 2.840000e-13 87.9
31 TraesCS6D01G393200 chr1D 83.673 98 11 5 57 149 340318907 340319004 2.840000e-13 87.9
32 TraesCS6D01G393200 chr1A 86.585 82 8 2 59 137 293739574 293739493 2.840000e-13 87.9
33 TraesCS6D01G393200 chr4D 82.524 103 12 3 413 514 497087974 497087877 1.020000e-12 86.1
34 TraesCS6D01G393200 chr3A 83.158 95 11 3 377 466 95366640 95366734 1.320000e-11 82.4
35 TraesCS6D01G393200 chr1B 92.727 55 4 0 2689 2743 44907023 44906969 4.760000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G393200 chr6D 467092259 467097984 5725 True 5004.000000 6484 100.000000 1 5726 2 chr6D.!!$R1 5725
1 TraesCS6D01G393200 chr6B 712268995 712273987 4992 True 2021.666667 3901 91.970000 627 5692 3 chr6B.!!$R2 5065
2 TraesCS6D01G393200 chr6B 712313230 712315394 2164 True 504.000000 878 89.975000 2077 2723 2 chr6B.!!$R3 646
3 TraesCS6D01G393200 chr6A 613356454 613361565 5111 True 753.285714 1679 89.545143 9 5693 7 chr6A.!!$R1 5684
4 TraesCS6D01G393200 chrUn 224650606 224651790 1184 True 628.000000 628 76.893000 1976 3228 1 chrUn.!!$R1 1252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 515 0.035881 CACCACAGATGCCTCACAGT 59.964 55.0 0.00 0.00 0.00 3.55 F
484 518 0.244721 CACAGATGCCTCACAGTCGA 59.755 55.0 0.00 0.00 0.00 4.20 F
485 519 0.244994 ACAGATGCCTCACAGTCGAC 59.755 55.0 7.70 7.70 0.00 4.20 F
492 526 0.452950 CCTCACAGTCGACGAGAACG 60.453 60.0 17.38 4.22 45.75 3.95 F
1434 1531 0.520847 GTCAGCTTTGCCTGCTCTTC 59.479 55.0 0.00 0.00 38.92 2.87 F
1439 1536 1.542492 CTTTGCCTGCTCTTCCATGT 58.458 50.0 0.00 0.00 0.00 3.21 F
2723 2868 1.632589 GGGACTGAACCCTGCAAAAT 58.367 50.0 0.00 0.00 45.90 1.82 F
3031 3208 1.093972 CCATTCATGTACCGCAGCAA 58.906 50.0 0.00 0.00 0.00 3.91 F
4492 4730 0.604578 ACACATGCCATGGTTTCTGC 59.395 50.0 14.67 0.00 33.60 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1830 0.776080 ACATCCCCCACCTTTCCTGT 60.776 55.000 0.00 0.00 0.00 4.00 R
2103 2211 1.139163 CAATCCAAGCAAACGCAACC 58.861 50.000 0.00 0.00 0.00 3.77 R
2108 2216 2.200067 TGCAAACAATCCAAGCAAACG 58.800 42.857 0.00 0.00 31.42 3.60 R
2172 2280 3.251487 TGACAAAACTTAGCGGTAAAGCC 59.749 43.478 8.61 0.00 38.01 4.35 R
2781 2955 0.032217 CTTCTCCAGGAGCTCCCTCT 60.032 60.000 29.54 8.34 45.60 3.69 R
3010 3187 0.463654 GCTGCGGTACATGAATGGGA 60.464 55.000 0.00 0.00 0.00 4.37 R
4437 4672 0.527565 CAGAAATGGGAGCCAAACCG 59.472 55.000 0.00 0.00 36.95 4.44 R
4597 4835 0.803117 TCTGACCTGACATCGACGTC 59.197 55.000 4.33 4.33 36.40 4.34 R
5301 5623 0.107410 TACACATGCCCGGTTCATCC 60.107 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.074579 TGGTTGAAAATCCCCCACCTA 58.925 47.619 0.00 0.00 0.00 3.08
38 39 1.929494 TGAAAATCCCCCACCTATGCT 59.071 47.619 0.00 0.00 0.00 3.79
44 45 1.750399 CCCCACCTATGCTGCACAC 60.750 63.158 3.57 0.00 0.00 3.82
48 49 1.674519 CCACCTATGCTGCACACGTAA 60.675 52.381 3.57 0.00 0.00 3.18
74 75 8.815565 TGAGAAAGAGAGTGATAGTGTATCTT 57.184 34.615 0.00 0.00 36.17 2.40
85 86 2.636830 AGTGTATCTTGGTGATGCAGC 58.363 47.619 0.00 0.00 45.85 5.25
94 95 1.962100 TGGTGATGCAGCAAAATGTGA 59.038 42.857 6.05 0.00 38.96 3.58
96 97 3.007074 TGGTGATGCAGCAAAATGTGATT 59.993 39.130 6.05 0.00 38.96 2.57
105 106 7.420002 TGCAGCAAAATGTGATTATAGTCATC 58.580 34.615 0.83 0.00 0.00 2.92
141 142 1.962092 TTCTCATTACAACGCGCGGC 61.962 55.000 35.22 0.00 0.00 6.53
169 173 5.472137 TGCTGGTTAAAGGTAATGACTGAAC 59.528 40.000 0.00 0.00 0.00 3.18
178 182 5.880901 AGGTAATGACTGAACATGGACTTT 58.119 37.500 0.00 0.00 0.00 2.66
180 184 4.510038 AATGACTGAACATGGACTTTGC 57.490 40.909 0.00 0.00 0.00 3.68
208 212 2.481568 CCGGAGAAACGAAAACCTTACC 59.518 50.000 0.00 0.00 35.47 2.85
225 229 0.468648 ACCTCTAACCCGGCTATTGC 59.531 55.000 0.00 0.00 38.76 3.56
273 277 8.950007 ATAAGAGGGAAAATAAAGAACAACCA 57.050 30.769 0.00 0.00 0.00 3.67
281 285 7.545615 GGAAAATAAAGAACAACCACCATCATC 59.454 37.037 0.00 0.00 0.00 2.92
306 310 7.639850 TCGATCGAAGAATTTGTTTTGCATATC 59.360 33.333 16.99 0.00 43.58 1.63
309 313 9.643693 ATCGAAGAATTTGTTTTGCATATCTTT 57.356 25.926 0.00 0.00 43.58 2.52
310 314 9.128107 TCGAAGAATTTGTTTTGCATATCTTTC 57.872 29.630 0.00 0.00 0.00 2.62
312 316 9.206870 GAAGAATTTGTTTTGCATATCTTTCCA 57.793 29.630 0.00 0.00 0.00 3.53
313 317 9.729281 AAGAATTTGTTTTGCATATCTTTCCAT 57.271 25.926 0.00 0.00 0.00 3.41
326 330 8.610896 GCATATCTTTCCATAGACTGATATTGC 58.389 37.037 0.00 0.00 30.69 3.56
327 331 9.662947 CATATCTTTCCATAGACTGATATTGCA 57.337 33.333 0.00 0.00 30.69 4.08
373 404 9.900710 CTCTAACATACTATAATCAAAGTCGCT 57.099 33.333 0.00 0.00 0.00 4.93
381 412 0.687354 ATCAAAGTCGCTCACACCCT 59.313 50.000 0.00 0.00 0.00 4.34
385 416 3.512329 TCAAAGTCGCTCACACCCTTATA 59.488 43.478 0.00 0.00 0.00 0.98
388 419 4.755266 AGTCGCTCACACCCTTATAAAT 57.245 40.909 0.00 0.00 0.00 1.40
392 423 3.002656 CGCTCACACCCTTATAAATGCAG 59.997 47.826 0.00 0.00 0.00 4.41
398 429 3.023832 ACCCTTATAAATGCAGGCACAC 58.976 45.455 0.00 0.00 0.00 3.82
400 431 3.181487 CCCTTATAAATGCAGGCACACAC 60.181 47.826 0.00 0.00 0.00 3.82
402 433 4.098349 CCTTATAAATGCAGGCACACACAT 59.902 41.667 0.00 0.00 0.00 3.21
423 455 8.530311 ACACATCCTATCTTATGAGCATCTAAG 58.470 37.037 0.00 0.00 34.92 2.18
440 474 4.130857 TCTAAGAGACTGAGTCGGCATAG 58.869 47.826 6.99 9.97 37.67 2.23
441 475 1.028905 AGAGACTGAGTCGGCATAGC 58.971 55.000 6.99 0.00 37.67 2.97
444 478 1.339610 AGACTGAGTCGGCATAGCATC 59.660 52.381 6.99 0.00 37.67 3.91
448 482 1.756538 TGAGTCGGCATAGCATCTTGA 59.243 47.619 0.00 0.00 0.00 3.02
449 483 2.168313 TGAGTCGGCATAGCATCTTGAA 59.832 45.455 0.00 0.00 0.00 2.69
451 485 3.609853 AGTCGGCATAGCATCTTGAAAA 58.390 40.909 0.00 0.00 0.00 2.29
452 486 4.009675 AGTCGGCATAGCATCTTGAAAAA 58.990 39.130 0.00 0.00 0.00 1.94
457 491 5.396362 CGGCATAGCATCTTGAAAAATTACG 59.604 40.000 0.00 0.00 0.00 3.18
464 498 7.078228 AGCATCTTGAAAAATTACGAAGTCAC 58.922 34.615 0.00 0.00 43.93 3.67
468 502 6.316640 TCTTGAAAAATTACGAAGTCACCACA 59.683 34.615 0.00 0.00 43.93 4.17
471 505 6.485313 TGAAAAATTACGAAGTCACCACAGAT 59.515 34.615 0.00 0.00 43.93 2.90
474 508 0.320771 ACGAAGTCACCACAGATGCC 60.321 55.000 0.00 0.00 29.74 4.40
476 510 1.731720 GAAGTCACCACAGATGCCTC 58.268 55.000 0.00 0.00 0.00 4.70
477 511 1.002430 GAAGTCACCACAGATGCCTCA 59.998 52.381 0.00 0.00 0.00 3.86
481 515 0.035881 CACCACAGATGCCTCACAGT 59.964 55.000 0.00 0.00 0.00 3.55
482 516 0.322975 ACCACAGATGCCTCACAGTC 59.677 55.000 0.00 0.00 0.00 3.51
483 517 0.738762 CCACAGATGCCTCACAGTCG 60.739 60.000 0.00 0.00 0.00 4.18
484 518 0.244721 CACAGATGCCTCACAGTCGA 59.755 55.000 0.00 0.00 0.00 4.20
485 519 0.244994 ACAGATGCCTCACAGTCGAC 59.755 55.000 7.70 7.70 0.00 4.20
488 522 0.524392 GATGCCTCACAGTCGACGAG 60.524 60.000 10.46 10.70 0.00 4.18
490 524 1.170290 TGCCTCACAGTCGACGAGAA 61.170 55.000 17.38 5.67 0.00 2.87
492 526 0.452950 CCTCACAGTCGACGAGAACG 60.453 60.000 17.38 4.22 45.75 3.95
506 540 2.094700 CGAGAACGTCTTCTCCCAATGA 60.095 50.000 10.86 0.00 46.98 2.57
515 549 6.659242 ACGTCTTCTCCCAATGAACAAATATT 59.341 34.615 0.00 0.00 0.00 1.28
517 551 6.753744 GTCTTCTCCCAATGAACAAATATTGC 59.246 38.462 0.00 0.00 33.92 3.56
518 552 6.664816 TCTTCTCCCAATGAACAAATATTGCT 59.335 34.615 0.00 0.00 33.92 3.91
523 557 5.064198 CCCAATGAACAAATATTGCTGCAAG 59.936 40.000 20.72 8.96 33.92 4.01
543 577 8.532186 TGCAAGCCTGAAATAAAATATAGGAA 57.468 30.769 0.00 0.00 0.00 3.36
544 578 9.146586 TGCAAGCCTGAAATAAAATATAGGAAT 57.853 29.630 0.00 0.00 0.00 3.01
596 630 1.355381 ACTTGAACCATGATGGGCTGA 59.645 47.619 17.04 0.00 43.37 4.26
601 636 3.181451 TGAACCATGATGGGCTGAGATAC 60.181 47.826 17.04 0.00 43.37 2.24
603 638 2.371179 ACCATGATGGGCTGAGATACTG 59.629 50.000 17.04 0.00 43.37 2.74
606 641 4.040829 CCATGATGGGCTGAGATACTGTTA 59.959 45.833 2.79 0.00 32.67 2.41
620 655 9.877222 TGAGATACTGTTATCCTTCTAACCATA 57.123 33.333 0.00 0.00 35.53 2.74
642 677 8.834465 CCATACAAAAATCAAAATGTTGGTTCA 58.166 29.630 0.00 0.00 37.06 3.18
644 679 7.920160 ACAAAAATCAAAATGTTGGTTCACT 57.080 28.000 0.00 0.00 37.06 3.41
645 680 8.334263 ACAAAAATCAAAATGTTGGTTCACTT 57.666 26.923 0.00 0.00 37.06 3.16
664 699 7.873719 TCACTTTTGTATCCAAAGTCTTTGA 57.126 32.000 24.09 12.07 43.26 2.69
769 823 2.166050 CTGATGACTCAGCAGCAGTAGT 59.834 50.000 11.25 0.00 44.80 2.73
811 865 1.712977 CCGCTTGCTTGGATGCTCTC 61.713 60.000 0.00 0.00 0.00 3.20
1337 1431 3.898509 CCTCGCGCTCCAGGAGAG 61.899 72.222 21.89 18.66 46.29 3.20
1368 1462 0.975556 TCATCCTCGGCAAGCAGGTA 60.976 55.000 0.00 0.00 0.00 3.08
1370 1464 0.978146 ATCCTCGGCAAGCAGGTAGT 60.978 55.000 0.00 0.00 0.00 2.73
1420 1514 4.699257 AGATTTCACCTTGATTCAGTCAGC 59.301 41.667 0.00 0.00 38.29 4.26
1434 1531 0.520847 GTCAGCTTTGCCTGCTCTTC 59.479 55.000 0.00 0.00 38.92 2.87
1439 1536 1.542492 CTTTGCCTGCTCTTCCATGT 58.458 50.000 0.00 0.00 0.00 3.21
1445 1542 1.829849 CCTGCTCTTCCATGTCTCTGA 59.170 52.381 0.00 0.00 0.00 3.27
1455 1552 5.144692 TCCATGTCTCTGAAACTCTGAAG 57.855 43.478 0.00 0.00 0.00 3.02
1502 1601 5.491982 ACTGAGACCAAATCTTATGGACAC 58.508 41.667 0.00 0.00 40.56 3.67
1510 1609 5.105635 CCAAATCTTATGGACACAACATGCT 60.106 40.000 0.00 0.00 40.56 3.79
1514 1618 4.696877 TCTTATGGACACAACATGCTCAAG 59.303 41.667 0.00 0.00 0.00 3.02
1515 1619 2.636647 TGGACACAACATGCTCAAGA 57.363 45.000 0.00 0.00 0.00 3.02
1556 1660 6.072452 GCTTATATAACACCTGAATCCTTGGC 60.072 42.308 0.00 0.00 0.00 4.52
1703 1807 4.260985 TCATTTCACATTCTGCACGGTAT 58.739 39.130 0.00 0.00 0.00 2.73
1704 1808 4.094739 TCATTTCACATTCTGCACGGTATG 59.905 41.667 0.00 0.00 0.00 2.39
1709 1813 5.182487 TCACATTCTGCACGGTATGTAATT 58.818 37.500 1.94 0.00 30.53 1.40
1714 1818 4.603985 TCTGCACGGTATGTAATTCGTAG 58.396 43.478 0.00 0.00 34.27 3.51
1715 1819 4.096833 TCTGCACGGTATGTAATTCGTAGT 59.903 41.667 0.00 0.00 34.27 2.73
1716 1820 5.296531 TCTGCACGGTATGTAATTCGTAGTA 59.703 40.000 0.00 0.00 34.27 1.82
1732 1836 6.741992 TCGTAGTACTATTTTCGACAGGAA 57.258 37.500 5.75 0.00 0.00 3.36
1735 1839 6.471519 CGTAGTACTATTTTCGACAGGAAAGG 59.528 42.308 5.75 0.00 44.95 3.11
1742 1846 2.221299 CGACAGGAAAGGTGGGGGA 61.221 63.158 0.00 0.00 0.00 4.81
1759 1863 4.288626 TGGGGGATGTTACTTAGATATGCC 59.711 45.833 0.00 0.00 0.00 4.40
1764 1868 6.428159 GGGATGTTACTTAGATATGCCAGTTG 59.572 42.308 0.00 0.00 30.61 3.16
1787 1891 7.232118 TGTATCTCAGATGTTCAAGACAGAA 57.768 36.000 0.00 0.00 42.62 3.02
1811 1915 5.254032 ACAATTCTCTTATCTTTCTGGGGGT 59.746 40.000 0.00 0.00 0.00 4.95
1812 1916 6.190587 CAATTCTCTTATCTTTCTGGGGGTT 58.809 40.000 0.00 0.00 0.00 4.11
1815 1919 5.816682 TCTCTTATCTTTCTGGGGGTTTTC 58.183 41.667 0.00 0.00 0.00 2.29
1833 1937 6.317893 GGGTTTTCGTGGAATTATACATGTCT 59.682 38.462 0.00 0.00 0.00 3.41
1841 1945 9.261180 CGTGGAATTATACATGTCTATTTCACT 57.739 33.333 23.07 0.00 34.18 3.41
1884 1988 9.668497 GGATAACAGGGAAATATATAACACTCC 57.332 37.037 0.00 0.00 0.00 3.85
1902 2006 4.914983 ACTCCAGTGATGTGATTGTCAAT 58.085 39.130 0.00 0.00 0.00 2.57
1904 2008 4.909001 TCCAGTGATGTGATTGTCAATCA 58.091 39.130 21.80 21.80 45.19 2.57
1914 2018 4.980590 TGATTGTCAATCATGCGTAAACC 58.019 39.130 21.80 0.00 42.69 3.27
1915 2019 4.457257 TGATTGTCAATCATGCGTAAACCA 59.543 37.500 21.80 0.00 42.69 3.67
1916 2020 3.822594 TGTCAATCATGCGTAAACCAC 57.177 42.857 0.00 0.00 0.00 4.16
1917 2021 3.407698 TGTCAATCATGCGTAAACCACT 58.592 40.909 0.00 0.00 0.00 4.00
1931 2035 6.622896 GCGTAAACCACTCTATTGCTCAAATT 60.623 38.462 0.00 0.00 0.00 1.82
1943 2047 9.985730 TCTATTGCTCAAATTGAAATGTTTCTT 57.014 25.926 6.99 0.00 38.02 2.52
1962 2066 5.118729 TCTTCTACTGTTTTGGGGTCAAA 57.881 39.130 0.00 0.00 40.71 2.69
1963 2067 4.885325 TCTTCTACTGTTTTGGGGTCAAAC 59.115 41.667 0.00 0.00 41.97 2.93
1965 2069 5.633655 TCTACTGTTTTGGGGTCAAACTA 57.366 39.130 0.00 0.00 41.97 2.24
1966 2070 5.370679 TCTACTGTTTTGGGGTCAAACTAC 58.629 41.667 0.00 0.00 41.97 2.73
1967 2071 3.970842 ACTGTTTTGGGGTCAAACTACA 58.029 40.909 0.00 0.00 41.97 2.74
1968 2072 4.542697 ACTGTTTTGGGGTCAAACTACAT 58.457 39.130 0.00 0.00 41.97 2.29
1980 2084 6.263617 GGGTCAAACTACATTTGGAGTGTTTA 59.736 38.462 0.00 0.00 46.65 2.01
2009 2114 9.916360 TCTCTTAAGGGATTTTAGGGATAAAAC 57.084 33.333 0.00 0.00 32.51 2.43
2086 2192 4.689612 TTCTTCCTGCTGACTTAGTTGT 57.310 40.909 0.00 0.00 0.00 3.32
2108 2216 7.527084 TGTTTACTTTGTTTAACATGGTTGC 57.473 32.000 0.00 0.00 0.00 4.17
2197 2305 5.562113 GCTTTACCGCTAAGTTTTGTCATGT 60.562 40.000 0.00 0.00 0.00 3.21
2228 2336 5.888161 AGAACAAAGGACAGACAACAAGAAT 59.112 36.000 0.00 0.00 0.00 2.40
2254 2364 6.145535 GTGCAGAAAGTTTAGATTTGGAGTG 58.854 40.000 0.00 0.00 0.00 3.51
2485 2605 3.387374 TGGAGGTTTTTGTCATTGCACAT 59.613 39.130 0.00 0.00 0.00 3.21
2542 2686 6.770785 TCTTGTCCAAATAAGCACTGTAACTT 59.229 34.615 0.00 1.54 0.00 2.66
2645 2789 9.900710 TGTATTTTTAAAACTGATGTTGCGTAT 57.099 25.926 0.00 0.00 36.39 3.06
2723 2868 1.632589 GGGACTGAACCCTGCAAAAT 58.367 50.000 0.00 0.00 45.90 1.82
2743 2888 2.810870 ACCACCACACAACACCTTAA 57.189 45.000 0.00 0.00 0.00 1.85
2775 2949 2.789213 TGCGATGAATTTTCTCCACCA 58.211 42.857 0.00 0.00 0.00 4.17
2780 2954 5.622007 GCGATGAATTTTCTCCACCATGAAA 60.622 40.000 0.00 0.00 0.00 2.69
2781 2955 6.389091 CGATGAATTTTCTCCACCATGAAAA 58.611 36.000 0.00 0.00 43.40 2.29
2919 3096 4.100963 CCGCTGGGGCATTATATATCACTA 59.899 45.833 0.00 0.00 38.60 2.74
2926 3103 5.823045 GGGCATTATATATCACTACCTTGCC 59.177 44.000 0.00 0.00 43.94 4.52
2987 3164 5.111989 GCACTAGCACAGAGTTTGATCATA 58.888 41.667 0.00 0.00 41.58 2.15
3008 3185 2.159382 CCCCATGCCACGATAATAACC 58.841 52.381 0.00 0.00 0.00 2.85
3010 3187 3.486383 CCCATGCCACGATAATAACCTT 58.514 45.455 0.00 0.00 0.00 3.50
3022 3199 7.659799 CACGATAATAACCTTCCCATTCATGTA 59.340 37.037 0.00 0.00 0.00 2.29
3031 3208 1.093972 CCATTCATGTACCGCAGCAA 58.906 50.000 0.00 0.00 0.00 3.91
3131 3308 6.624423 AGGTTTCCAAATGATTTGATCTTCG 58.376 36.000 18.82 1.75 43.26 3.79
3174 3354 5.543790 TCCTGAATATGGCACTCAATAGCTA 59.456 40.000 0.00 0.00 0.00 3.32
3253 3474 4.057432 CCCCTTTAGCAAACAAACACATG 58.943 43.478 0.00 0.00 0.00 3.21
3419 3648 5.653330 TGTTTATGTCATCACTGCATGGAAT 59.347 36.000 0.00 0.00 0.00 3.01
3471 3700 3.567164 AGTTGGAAGCACATTTCTCAGTG 59.433 43.478 0.00 0.00 38.74 3.66
3478 3707 2.291465 GCACATTTCTCAGTGTTCTGCA 59.709 45.455 0.00 0.00 41.10 4.41
3480 3709 4.558095 GCACATTTCTCAGTGTTCTGCATT 60.558 41.667 0.00 0.00 41.10 3.56
3912 4141 5.767816 TTTTAGTGAGGAAAGAACTTGCC 57.232 39.130 3.49 3.49 38.63 4.52
3983 4213 9.253832 TCCCTAGAAGCATTTAATTTCATTTCA 57.746 29.630 0.00 0.00 0.00 2.69
4051 4281 5.010922 AGCAACAAAGGATGCAAACATAAGA 59.989 36.000 0.00 0.00 44.50 2.10
4062 4292 7.148423 GGATGCAAACATAAGAAAATTGTTCCC 60.148 37.037 0.00 0.00 36.35 3.97
4063 4293 6.825610 TGCAAACATAAGAAAATTGTTCCCT 58.174 32.000 0.00 0.00 32.66 4.20
4064 4294 7.278875 TGCAAACATAAGAAAATTGTTCCCTT 58.721 30.769 0.00 0.00 32.66 3.95
4124 4354 7.492669 TCTCTTTTACTGTGCTGTGCTTATATC 59.507 37.037 0.00 0.00 0.00 1.63
4161 4391 4.517285 TCTATGCCAATGGTTCTCAAGAC 58.483 43.478 0.00 0.00 0.00 3.01
4193 4424 6.331369 ACAGAAAATTGTAGTCAATGGTGG 57.669 37.500 0.00 0.00 42.60 4.61
4230 4461 6.769822 AGGTGATAATTGACAAGGATAAGCAG 59.230 38.462 0.00 0.00 0.00 4.24
4359 4590 5.422012 TCAGTAGACTGCTCATTGGTCATAA 59.578 40.000 4.72 0.00 43.46 1.90
4459 4696 1.273327 GTTTGGCTCCCATTTCTGTGG 59.727 52.381 0.00 0.00 39.05 4.17
4474 4711 2.167281 TCTGTGGCTTCATCTGAGCTAC 59.833 50.000 5.77 5.77 39.87 3.58
4492 4730 0.604578 ACACATGCCATGGTTTCTGC 59.395 50.000 14.67 0.00 33.60 4.26
4493 4731 0.892755 CACATGCCATGGTTTCTGCT 59.107 50.000 14.67 0.00 33.60 4.24
4494 4732 1.135199 CACATGCCATGGTTTCTGCTC 60.135 52.381 14.67 0.00 33.60 4.26
4524 4762 1.830477 GATCTGAGACTGAACCAGCCT 59.170 52.381 0.00 0.00 34.37 4.58
4587 4825 3.425162 GTGATCAAGAAAGTCACCCCT 57.575 47.619 0.00 0.00 37.00 4.79
4597 4835 2.930019 TCACCCCTGCAGACCTGG 60.930 66.667 17.39 12.32 0.00 4.45
4726 4964 1.375013 GAAGCCCGCGTCCTGTAAA 60.375 57.895 4.92 0.00 0.00 2.01
4774 5013 1.227205 GCGACTCCAGATGCTCCTG 60.227 63.158 0.00 0.00 0.00 3.86
4889 5159 4.149598 GGGTGGAAACTGAACTGGTTATT 58.850 43.478 0.00 0.00 0.00 1.40
4906 5184 4.081142 GGTTATTTGTTGCTGGGCCTTAAT 60.081 41.667 4.53 0.00 0.00 1.40
4940 5218 0.897863 TGTTTAGCTGGGCCGCAAAT 60.898 50.000 19.61 4.88 0.00 2.32
5060 5372 7.540474 ACTTATTGGAGTACTCAGAAGTCAA 57.460 36.000 23.91 16.72 36.92 3.18
5092 5407 7.091353 CCCCCATGATCCCCTAAATAAATAGAT 60.091 40.741 0.00 0.00 0.00 1.98
5107 5422 2.472695 TAGATATTCCCATGCGCCAC 57.527 50.000 4.18 0.00 0.00 5.01
5113 5428 0.322906 TTCCCATGCGCCACACATTA 60.323 50.000 4.18 0.00 0.00 1.90
5114 5429 0.322906 TCCCATGCGCCACACATTAA 60.323 50.000 4.18 0.00 0.00 1.40
5115 5430 0.746063 CCCATGCGCCACACATTAAT 59.254 50.000 4.18 0.00 0.00 1.40
5116 5431 1.136695 CCCATGCGCCACACATTAATT 59.863 47.619 4.18 0.00 0.00 1.40
5123 5438 2.491693 CGCCACACATTAATTTGGACCT 59.508 45.455 6.56 0.00 0.00 3.85
5129 5444 6.828273 CCACACATTAATTTGGACCTATCTCA 59.172 38.462 6.56 0.00 0.00 3.27
5140 5455 4.835615 TGGACCTATCTCAGAAGCTATTCC 59.164 45.833 0.00 0.00 35.94 3.01
5170 5491 3.666253 GCAAAACCCCCACGTCCG 61.666 66.667 0.00 0.00 0.00 4.79
5183 5504 4.436998 GTCCGAGTGGCCACCTCG 62.437 72.222 32.88 32.88 39.93 4.63
5184 5505 4.671590 TCCGAGTGGCCACCTCGA 62.672 66.667 37.36 26.60 42.46 4.04
5185 5506 3.691342 CCGAGTGGCCACCTCGAA 61.691 66.667 37.36 6.00 42.46 3.71
5186 5507 2.579201 CGAGTGGCCACCTCGAAT 59.421 61.111 34.79 19.41 42.46 3.34
5187 5508 1.079127 CGAGTGGCCACCTCGAATT 60.079 57.895 34.79 18.77 42.46 2.17
5188 5509 1.084370 CGAGTGGCCACCTCGAATTC 61.084 60.000 34.79 23.62 42.46 2.17
5236 5557 3.676605 TCGCCGCCAAAGACTCGA 61.677 61.111 0.00 0.00 0.00 4.04
5265 5586 3.181516 GCGATCGCAACTTTCTCTTCAAT 60.182 43.478 33.89 0.00 41.49 2.57
5266 5587 4.670221 GCGATCGCAACTTTCTCTTCAATT 60.670 41.667 33.89 0.00 41.49 2.32
5271 5592 3.737774 GCAACTTTCTCTTCAATTGTGCC 59.262 43.478 5.13 0.00 0.00 5.01
5297 5619 2.909965 CCACCAAACACACGGGGG 60.910 66.667 0.00 0.00 40.23 5.40
5319 5641 1.378514 GGATGAACCGGGCATGTGT 60.379 57.895 15.68 0.00 0.00 3.72
5436 5775 1.668151 GTGAGGCACAACCGTCCTC 60.668 63.158 0.00 0.00 46.52 3.71
5442 5781 1.507141 GCACAACCGTCCTCCACTTG 61.507 60.000 0.00 0.00 0.00 3.16
5484 5852 1.474879 TCGCACATTAGATCCGTGTGA 59.525 47.619 20.54 16.29 45.21 3.58
5500 5868 1.077357 TGACAAACCACACGCCCTT 60.077 52.632 0.00 0.00 0.00 3.95
5505 5873 1.388837 AAACCACACGCCCTTTGGTC 61.389 55.000 0.00 0.00 43.08 4.02
5506 5874 3.353836 CCACACGCCCTTTGGTCG 61.354 66.667 0.00 0.00 37.25 4.79
5512 5880 4.011517 GCCCTTTGGTCGGACCGA 62.012 66.667 21.52 13.88 42.58 4.69
5529 5937 0.732880 CGACGATGACGCCTTCACTT 60.733 55.000 0.00 0.00 43.96 3.16
5531 5939 0.389948 ACGATGACGCCTTCACTTCC 60.390 55.000 0.00 0.00 43.96 3.46
5534 5942 2.427506 GATGACGCCTTCACTTCCTTT 58.572 47.619 0.00 0.00 36.92 3.11
5536 5944 3.478857 TGACGCCTTCACTTCCTTTTA 57.521 42.857 0.00 0.00 0.00 1.52
5541 5949 6.156748 ACGCCTTCACTTCCTTTTAAATTT 57.843 33.333 0.00 0.00 0.00 1.82
5542 5950 7.013464 TGACGCCTTCACTTCCTTTTAAATTTA 59.987 33.333 0.00 0.00 0.00 1.40
5543 5951 7.892609 ACGCCTTCACTTCCTTTTAAATTTAT 58.107 30.769 0.00 0.00 0.00 1.40
5544 5952 7.812669 ACGCCTTCACTTCCTTTTAAATTTATG 59.187 33.333 0.00 0.00 0.00 1.90
5545 5953 8.026607 CGCCTTCACTTCCTTTTAAATTTATGA 58.973 33.333 0.00 0.00 0.00 2.15
5546 5954 9.140286 GCCTTCACTTCCTTTTAAATTTATGAC 57.860 33.333 0.00 0.00 0.00 3.06
5547 5955 9.341899 CCTTCACTTCCTTTTAAATTTATGACG 57.658 33.333 0.00 0.00 0.00 4.35
5565 5973 9.463443 TTTATGACGATGACATAGTACTTCATG 57.537 33.333 12.26 8.40 32.88 3.07
5616 6041 9.159254 TCATAGTTAGTATGGTCTTCATGGATT 57.841 33.333 7.16 0.00 39.36 3.01
5693 6195 2.044450 CCATTCCCCTCCCCTCCA 59.956 66.667 0.00 0.00 0.00 3.86
5694 6196 2.081161 CCATTCCCCTCCCCTCCAG 61.081 68.421 0.00 0.00 0.00 3.86
5695 6197 2.368878 ATTCCCCTCCCCTCCAGC 60.369 66.667 0.00 0.00 0.00 4.85
5696 6198 3.287954 ATTCCCCTCCCCTCCAGCA 62.288 63.158 0.00 0.00 0.00 4.41
5697 6199 3.950861 TTCCCCTCCCCTCCAGCAG 62.951 68.421 0.00 0.00 0.00 4.24
5698 6200 4.748798 CCCCTCCCCTCCAGCAGT 62.749 72.222 0.00 0.00 0.00 4.40
5699 6201 3.086600 CCCTCCCCTCCAGCAGTC 61.087 72.222 0.00 0.00 0.00 3.51
5700 6202 3.086600 CCTCCCCTCCAGCAGTCC 61.087 72.222 0.00 0.00 0.00 3.85
5701 6203 2.040278 CTCCCCTCCAGCAGTCCT 59.960 66.667 0.00 0.00 0.00 3.85
5702 6204 2.039624 TCCCCTCCAGCAGTCCTC 59.960 66.667 0.00 0.00 0.00 3.71
5703 6205 2.040278 CCCCTCCAGCAGTCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
5704 6206 2.063378 CCCCTCCAGCAGTCCTCTC 61.063 68.421 0.00 0.00 0.00 3.20
5705 6207 1.001503 CCCTCCAGCAGTCCTCTCT 59.998 63.158 0.00 0.00 0.00 3.10
5706 6208 1.329171 CCCTCCAGCAGTCCTCTCTG 61.329 65.000 0.00 0.00 38.35 3.35
5714 6216 1.032014 CAGTCCTCTCTGCTCTAGCC 58.968 60.000 0.00 0.00 41.18 3.93
5715 6217 0.926293 AGTCCTCTCTGCTCTAGCCT 59.074 55.000 0.00 0.00 41.18 4.58
5716 6218 2.131854 AGTCCTCTCTGCTCTAGCCTA 58.868 52.381 0.00 0.00 41.18 3.93
5717 6219 2.106511 AGTCCTCTCTGCTCTAGCCTAG 59.893 54.545 0.00 0.00 41.18 3.02
5718 6220 2.131854 TCCTCTCTGCTCTAGCCTAGT 58.868 52.381 0.00 0.00 41.18 2.57
5719 6221 2.105821 TCCTCTCTGCTCTAGCCTAGTC 59.894 54.545 0.00 0.00 41.18 2.59
5720 6222 2.143122 CTCTCTGCTCTAGCCTAGTCG 58.857 57.143 0.00 0.00 41.18 4.18
5721 6223 0.591170 CTCTGCTCTAGCCTAGTCGC 59.409 60.000 0.00 4.02 41.18 5.19
5722 6224 0.820074 TCTGCTCTAGCCTAGTCGCC 60.820 60.000 11.34 0.00 41.18 5.54
5723 6225 0.821711 CTGCTCTAGCCTAGTCGCCT 60.822 60.000 11.34 0.00 41.18 5.52
5724 6226 0.820074 TGCTCTAGCCTAGTCGCCTC 60.820 60.000 11.34 0.00 41.18 4.70
5725 6227 1.520600 GCTCTAGCCTAGTCGCCTCC 61.521 65.000 0.00 0.00 34.31 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.863956 AGGTGGGGGATTTTCAACCA 59.136 50.000 0.00 0.00 0.00 3.67
20 21 1.689258 GCAGCATAGGTGGGGGATTTT 60.689 52.381 0.00 0.00 0.00 1.82
28 29 0.108377 TACGTGTGCAGCATAGGTGG 60.108 55.000 23.26 3.40 0.00 4.61
34 35 2.385013 TCTCATTACGTGTGCAGCAT 57.615 45.000 0.00 0.00 0.00 3.79
38 39 4.237724 CTCTCTTTCTCATTACGTGTGCA 58.762 43.478 0.00 0.00 0.00 4.57
44 45 7.476667 ACACTATCACTCTCTTTCTCATTACG 58.523 38.462 0.00 0.00 0.00 3.18
48 49 8.995027 AGATACACTATCACTCTCTTTCTCAT 57.005 34.615 0.00 0.00 37.65 2.90
72 73 2.734606 CACATTTTGCTGCATCACCAAG 59.265 45.455 1.84 0.00 0.00 3.61
74 75 1.962100 TCACATTTTGCTGCATCACCA 59.038 42.857 1.84 0.00 0.00 4.17
119 120 2.566036 CGCGCGTTGTAATGAGAAAAA 58.434 42.857 24.19 0.00 0.00 1.94
120 121 1.136197 CCGCGCGTTGTAATGAGAAAA 60.136 47.619 29.95 0.00 0.00 2.29
121 122 0.440758 CCGCGCGTTGTAATGAGAAA 59.559 50.000 29.95 0.00 0.00 2.52
122 123 1.962092 GCCGCGCGTTGTAATGAGAA 61.962 55.000 29.95 0.00 0.00 2.87
123 124 2.449525 GCCGCGCGTTGTAATGAGA 61.450 57.895 29.95 0.00 0.00 3.27
124 125 2.021380 GCCGCGCGTTGTAATGAG 59.979 61.111 29.95 10.92 0.00 2.90
125 126 3.492545 GGCCGCGCGTTGTAATGA 61.493 61.111 29.95 0.00 0.00 2.57
137 138 0.388520 CTTTAACCAGCAAAGGCCGC 60.389 55.000 0.00 0.00 42.56 6.53
149 153 6.657541 TCCATGTTCAGTCATTACCTTTAACC 59.342 38.462 0.00 0.00 0.00 2.85
157 161 5.182001 AGCAAAGTCCATGTTCAGTCATTAC 59.818 40.000 0.00 0.00 0.00 1.89
169 173 4.196193 TCCGGTTATTAGCAAAGTCCATG 58.804 43.478 0.00 0.00 0.00 3.66
178 182 3.872511 TCGTTTCTCCGGTTATTAGCA 57.127 42.857 0.00 0.00 0.00 3.49
180 184 5.640783 AGGTTTTCGTTTCTCCGGTTATTAG 59.359 40.000 0.00 0.00 0.00 1.73
208 212 1.541233 CCAGCAATAGCCGGGTTAGAG 60.541 57.143 13.43 0.56 43.56 2.43
248 252 8.803235 GTGGTTGTTCTTTATTTTCCCTCTTAT 58.197 33.333 0.00 0.00 0.00 1.73
249 253 7.231925 GGTGGTTGTTCTTTATTTTCCCTCTTA 59.768 37.037 0.00 0.00 0.00 2.10
250 254 6.041637 GGTGGTTGTTCTTTATTTTCCCTCTT 59.958 38.462 0.00 0.00 0.00 2.85
252 256 5.303333 TGGTGGTTGTTCTTTATTTTCCCTC 59.697 40.000 0.00 0.00 0.00 4.30
253 257 5.212745 TGGTGGTTGTTCTTTATTTTCCCT 58.787 37.500 0.00 0.00 0.00 4.20
254 258 5.538849 TGGTGGTTGTTCTTTATTTTCCC 57.461 39.130 0.00 0.00 0.00 3.97
273 277 5.118990 ACAAATTCTTCGATCGATGATGGT 58.881 37.500 27.90 20.70 0.00 3.55
281 285 5.997732 ATGCAAAACAAATTCTTCGATCG 57.002 34.783 9.36 9.36 0.00 3.69
306 310 7.974482 TCATGCAATATCAGTCTATGGAAAG 57.026 36.000 0.00 0.00 0.00 2.62
309 313 5.878669 GCATCATGCAATATCAGTCTATGGA 59.121 40.000 4.20 0.00 44.26 3.41
310 314 6.120378 GCATCATGCAATATCAGTCTATGG 57.880 41.667 4.20 0.00 44.26 2.74
348 352 9.894783 GAGCGACTTTGATTATAGTATGTTAGA 57.105 33.333 0.00 0.00 0.00 2.10
350 354 9.459640 GTGAGCGACTTTGATTATAGTATGTTA 57.540 33.333 0.00 0.00 0.00 2.41
351 355 7.979537 TGTGAGCGACTTTGATTATAGTATGTT 59.020 33.333 0.00 0.00 0.00 2.71
353 357 7.096023 GGTGTGAGCGACTTTGATTATAGTATG 60.096 40.741 0.00 0.00 0.00 2.39
356 360 5.109903 GGTGTGAGCGACTTTGATTATAGT 58.890 41.667 0.00 0.00 0.00 2.12
357 361 4.508124 GGGTGTGAGCGACTTTGATTATAG 59.492 45.833 0.00 0.00 0.00 1.31
358 362 4.161565 AGGGTGTGAGCGACTTTGATTATA 59.838 41.667 0.00 0.00 0.00 0.98
360 364 2.301870 AGGGTGTGAGCGACTTTGATTA 59.698 45.455 0.00 0.00 0.00 1.75
363 367 0.468226 AAGGGTGTGAGCGACTTTGA 59.532 50.000 0.00 0.00 0.00 2.69
368 372 3.002348 GCATTTATAAGGGTGTGAGCGAC 59.998 47.826 0.00 0.00 0.00 5.19
369 373 3.202906 GCATTTATAAGGGTGTGAGCGA 58.797 45.455 0.00 0.00 0.00 4.93
370 374 2.942376 TGCATTTATAAGGGTGTGAGCG 59.058 45.455 0.00 0.00 0.00 5.03
371 375 3.316308 CCTGCATTTATAAGGGTGTGAGC 59.684 47.826 0.00 0.00 0.00 4.26
373 404 3.287222 GCCTGCATTTATAAGGGTGTGA 58.713 45.455 0.00 0.00 0.00 3.58
381 412 4.097741 GGATGTGTGTGCCTGCATTTATAA 59.902 41.667 0.00 0.00 0.00 0.98
385 416 0.604578 GGATGTGTGTGCCTGCATTT 59.395 50.000 0.00 0.00 0.00 2.32
388 419 0.620030 ATAGGATGTGTGTGCCTGCA 59.380 50.000 0.00 0.00 33.28 4.41
392 423 4.960938 TCATAAGATAGGATGTGTGTGCC 58.039 43.478 0.00 0.00 0.00 5.01
398 429 8.747471 TCTTAGATGCTCATAAGATAGGATGTG 58.253 37.037 2.29 0.00 34.02 3.21
400 431 9.187996 TCTCTTAGATGCTCATAAGATAGGATG 57.812 37.037 5.82 0.00 37.38 3.51
402 433 8.390143 AGTCTCTTAGATGCTCATAAGATAGGA 58.610 37.037 5.82 0.03 37.38 2.94
423 455 0.741326 TGCTATGCCGACTCAGTCTC 59.259 55.000 2.61 0.00 0.00 3.36
440 474 6.305638 GGTGACTTCGTAATTTTTCAAGATGC 59.694 38.462 0.00 0.00 0.00 3.91
441 475 7.323656 GTGGTGACTTCGTAATTTTTCAAGATG 59.676 37.037 0.00 0.00 0.00 2.90
444 478 6.491394 TGTGGTGACTTCGTAATTTTTCAAG 58.509 36.000 0.00 0.00 0.00 3.02
448 482 6.668323 CATCTGTGGTGACTTCGTAATTTTT 58.332 36.000 0.00 0.00 0.00 1.94
449 483 5.334879 GCATCTGTGGTGACTTCGTAATTTT 60.335 40.000 0.00 0.00 0.00 1.82
451 485 3.684788 GCATCTGTGGTGACTTCGTAATT 59.315 43.478 0.00 0.00 0.00 1.40
452 486 3.262420 GCATCTGTGGTGACTTCGTAAT 58.738 45.455 0.00 0.00 0.00 1.89
457 491 1.002430 TGAGGCATCTGTGGTGACTTC 59.998 52.381 0.00 0.00 34.36 3.01
464 498 0.738762 CGACTGTGAGGCATCTGTGG 60.739 60.000 0.00 0.00 0.00 4.17
468 502 0.960861 TCGTCGACTGTGAGGCATCT 60.961 55.000 14.70 0.00 0.00 2.90
471 505 1.170290 TTCTCGTCGACTGTGAGGCA 61.170 55.000 14.70 1.47 0.00 4.75
474 508 2.988931 CGTTCTCGTCGACTGTGAG 58.011 57.895 14.70 12.81 0.00 3.51
488 522 3.399330 TGTTCATTGGGAGAAGACGTTC 58.601 45.455 0.00 0.00 0.00 3.95
490 524 3.485463 TTGTTCATTGGGAGAAGACGT 57.515 42.857 0.00 0.00 0.00 4.34
492 526 6.753744 GCAATATTTGTTCATTGGGAGAAGAC 59.246 38.462 0.00 0.00 33.61 3.01
495 529 6.632909 CAGCAATATTTGTTCATTGGGAGAA 58.367 36.000 0.00 0.00 33.61 2.87
496 530 5.394443 GCAGCAATATTTGTTCATTGGGAGA 60.394 40.000 0.00 0.00 33.61 3.71
503 537 4.081309 AGGCTTGCAGCAATATTTGTTCAT 60.081 37.500 8.67 0.00 44.75 2.57
506 540 3.258872 TCAGGCTTGCAGCAATATTTGTT 59.741 39.130 8.67 0.00 44.75 2.83
515 549 4.540359 ATTTTATTTCAGGCTTGCAGCA 57.460 36.364 9.78 0.00 44.75 4.41
517 551 8.169977 TCCTATATTTTATTTCAGGCTTGCAG 57.830 34.615 0.00 0.00 0.00 4.41
518 552 8.532186 TTCCTATATTTTATTTCAGGCTTGCA 57.468 30.769 0.00 0.00 0.00 4.08
577 611 2.022195 CTCAGCCCATCATGGTTCAAG 58.978 52.381 2.07 0.00 35.17 3.02
588 622 4.497516 AGGATAACAGTATCTCAGCCCAT 58.502 43.478 0.00 0.00 36.99 4.00
596 630 9.656323 TGTATGGTTAGAAGGATAACAGTATCT 57.344 33.333 0.00 0.00 37.38 1.98
620 655 7.920160 AGTGAACCAACATTTTGATTTTTGT 57.080 28.000 0.00 0.00 34.24 2.83
623 658 8.791675 ACAAAAGTGAACCAACATTTTGATTTT 58.208 25.926 13.77 0.00 41.24 1.82
624 659 8.334263 ACAAAAGTGAACCAACATTTTGATTT 57.666 26.923 13.77 0.00 41.24 2.17
625 660 7.920160 ACAAAAGTGAACCAACATTTTGATT 57.080 28.000 13.77 0.00 41.24 2.57
627 662 7.708752 GGATACAAAAGTGAACCAACATTTTGA 59.291 33.333 13.77 1.29 41.24 2.69
691 742 3.555795 GCACTCTCATCACTCCAACTTGA 60.556 47.826 0.00 0.00 0.00 3.02
692 743 2.740981 GCACTCTCATCACTCCAACTTG 59.259 50.000 0.00 0.00 0.00 3.16
693 744 2.289945 GGCACTCTCATCACTCCAACTT 60.290 50.000 0.00 0.00 0.00 2.66
694 745 1.277557 GGCACTCTCATCACTCCAACT 59.722 52.381 0.00 0.00 0.00 3.16
696 747 1.002430 GTGGCACTCTCATCACTCCAA 59.998 52.381 11.13 0.00 0.00 3.53
697 748 0.610174 GTGGCACTCTCATCACTCCA 59.390 55.000 11.13 0.00 0.00 3.86
769 823 3.004862 TGCGAGTTGTATCGTCTCACTA 58.995 45.455 0.00 0.00 44.53 2.74
811 865 2.692741 GGGGAGGAGAGTTGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
1420 1514 1.471684 GACATGGAAGAGCAGGCAAAG 59.528 52.381 0.00 0.00 0.00 2.77
1434 1531 4.689812 CACTTCAGAGTTTCAGAGACATGG 59.310 45.833 0.00 0.00 32.54 3.66
1439 1536 5.303078 AGCTAACACTTCAGAGTTTCAGAGA 59.697 40.000 0.00 0.00 32.54 3.10
1445 1542 4.689612 TCCAGCTAACACTTCAGAGTTT 57.310 40.909 0.00 0.00 32.54 2.66
1455 1552 4.574828 TCTGAACTTTGTTCCAGCTAACAC 59.425 41.667 1.45 0.00 39.02 3.32
1502 1601 5.305139 TGTGATGATTCTTGAGCATGTTG 57.695 39.130 0.00 0.00 33.76 3.33
1510 1609 3.943381 GCAGTGGATGTGATGATTCTTGA 59.057 43.478 0.00 0.00 0.00 3.02
1514 1618 7.918536 ATATAAGCAGTGGATGTGATGATTC 57.081 36.000 0.00 0.00 0.00 2.52
1515 1619 9.224267 GTTATATAAGCAGTGGATGTGATGATT 57.776 33.333 0.00 0.00 0.00 2.57
1575 1679 7.186021 ACTCTGTTTTCGACAAAATTATCGT 57.814 32.000 6.58 0.00 37.93 3.73
1703 1807 9.494479 CTGTCGAAAATAGTACTACGAATTACA 57.506 33.333 13.10 9.63 0.00 2.41
1704 1808 8.951969 CCTGTCGAAAATAGTACTACGAATTAC 58.048 37.037 13.10 6.22 0.00 1.89
1709 1813 6.741992 TTCCTGTCGAAAATAGTACTACGA 57.258 37.500 4.31 6.98 0.00 3.43
1714 1818 5.350640 CCACCTTTCCTGTCGAAAATAGTAC 59.649 44.000 0.00 0.00 39.98 2.73
1715 1819 5.484715 CCACCTTTCCTGTCGAAAATAGTA 58.515 41.667 0.00 0.00 39.98 1.82
1716 1820 4.324267 CCACCTTTCCTGTCGAAAATAGT 58.676 43.478 0.00 0.00 39.98 2.12
1724 1828 1.562672 ATCCCCCACCTTTCCTGTCG 61.563 60.000 0.00 0.00 0.00 4.35
1726 1830 0.776080 ACATCCCCCACCTTTCCTGT 60.776 55.000 0.00 0.00 0.00 4.00
1732 1836 3.810623 TCTAAGTAACATCCCCCACCTT 58.189 45.455 0.00 0.00 0.00 3.50
1735 1839 5.246307 GCATATCTAAGTAACATCCCCCAC 58.754 45.833 0.00 0.00 0.00 4.61
1742 1846 9.712305 GATACAACTGGCATATCTAAGTAACAT 57.288 33.333 0.00 0.00 0.00 2.71
1759 1863 6.870439 TGTCTTGAACATCTGAGATACAACTG 59.130 38.462 0.00 0.00 31.20 3.16
1764 1868 7.518731 GTTCTGTCTTGAACATCTGAGATAC 57.481 40.000 0.00 0.00 44.00 2.24
1787 1891 5.254032 ACCCCCAGAAAGATAAGAGAATTGT 59.746 40.000 0.00 0.00 0.00 2.71
1815 1919 9.261180 AGTGAAATAGACATGTATAATTCCACG 57.739 33.333 20.25 0.00 0.00 4.94
1881 1985 4.939439 TGATTGACAATCACATCACTGGAG 59.061 41.667 23.89 0.00 42.69 3.86
1882 1986 4.909001 TGATTGACAATCACATCACTGGA 58.091 39.130 23.89 0.69 42.69 3.86
1893 1997 4.793216 GTGGTTTACGCATGATTGACAATC 59.207 41.667 19.39 19.39 38.40 2.67
1894 1998 4.458989 AGTGGTTTACGCATGATTGACAAT 59.541 37.500 0.00 0.00 0.00 2.71
1895 1999 3.818210 AGTGGTTTACGCATGATTGACAA 59.182 39.130 0.00 0.00 0.00 3.18
1898 2002 3.937814 AGAGTGGTTTACGCATGATTGA 58.062 40.909 0.00 0.00 0.00 2.57
1899 2003 5.991328 ATAGAGTGGTTTACGCATGATTG 57.009 39.130 0.00 0.00 0.00 2.67
1902 2006 3.621268 GCAATAGAGTGGTTTACGCATGA 59.379 43.478 0.00 0.00 0.00 3.07
1904 2008 3.871594 GAGCAATAGAGTGGTTTACGCAT 59.128 43.478 0.00 0.00 0.00 4.73
1905 2009 3.259064 GAGCAATAGAGTGGTTTACGCA 58.741 45.455 0.00 0.00 0.00 5.24
1906 2010 3.259064 TGAGCAATAGAGTGGTTTACGC 58.741 45.455 0.00 0.00 0.00 4.42
1908 2012 7.816640 TCAATTTGAGCAATAGAGTGGTTTAC 58.183 34.615 0.00 0.00 0.00 2.01
1909 2013 7.994425 TCAATTTGAGCAATAGAGTGGTTTA 57.006 32.000 0.00 0.00 0.00 2.01
1910 2014 6.899393 TCAATTTGAGCAATAGAGTGGTTT 57.101 33.333 0.00 0.00 0.00 3.27
1911 2015 6.899393 TTCAATTTGAGCAATAGAGTGGTT 57.101 33.333 0.00 0.00 0.00 3.67
1912 2016 6.899393 TTTCAATTTGAGCAATAGAGTGGT 57.101 33.333 0.00 0.00 0.00 4.16
1913 2017 7.318141 ACATTTCAATTTGAGCAATAGAGTGG 58.682 34.615 0.00 0.00 0.00 4.00
1914 2018 8.752766 AACATTTCAATTTGAGCAATAGAGTG 57.247 30.769 0.00 0.00 0.00 3.51
1915 2019 9.415544 GAAACATTTCAATTTGAGCAATAGAGT 57.584 29.630 0.00 0.00 37.15 3.24
1916 2020 9.635520 AGAAACATTTCAATTTGAGCAATAGAG 57.364 29.630 7.10 0.00 39.61 2.43
1917 2021 9.985730 AAGAAACATTTCAATTTGAGCAATAGA 57.014 25.926 7.10 0.00 39.61 1.98
1931 2035 7.417342 CCCCAAAACAGTAGAAGAAACATTTCA 60.417 37.037 7.10 0.00 39.61 2.69
1943 2047 4.513406 AGTTTGACCCCAAAACAGTAGA 57.487 40.909 2.28 0.00 43.18 2.59
1962 2066 9.574516 AAGAGAAATAAACACTCCAAATGTAGT 57.425 29.630 0.00 0.00 0.00 2.73
1966 2070 9.846248 CCTTAAGAGAAATAAACACTCCAAATG 57.154 33.333 3.36 0.00 0.00 2.32
1967 2071 9.025041 CCCTTAAGAGAAATAAACACTCCAAAT 57.975 33.333 3.36 0.00 0.00 2.32
1968 2072 8.221944 TCCCTTAAGAGAAATAAACACTCCAAA 58.778 33.333 3.36 0.00 0.00 3.28
2009 2114 7.801547 ATCACAAAAACATTTCGAGCAATAG 57.198 32.000 0.00 0.00 0.00 1.73
2013 2118 4.208873 GCAATCACAAAAACATTTCGAGCA 59.791 37.500 0.00 0.00 0.00 4.26
2086 2192 6.331061 ACGCAACCATGTTAAACAAAGTAAA 58.669 32.000 0.00 0.00 0.00 2.01
2103 2211 1.139163 CAATCCAAGCAAACGCAACC 58.861 50.000 0.00 0.00 0.00 3.77
2108 2216 2.200067 TGCAAACAATCCAAGCAAACG 58.800 42.857 0.00 0.00 31.42 3.60
2172 2280 3.251487 TGACAAAACTTAGCGGTAAAGCC 59.749 43.478 8.61 0.00 38.01 4.35
2180 2288 7.060600 TCATTCTACATGACAAAACTTAGCG 57.939 36.000 0.00 0.00 0.00 4.26
2197 2305 6.419484 TGTCTGTCCTTTGTTCTCATTCTA 57.581 37.500 0.00 0.00 0.00 2.10
2228 2336 6.321181 ACTCCAAATCTAAACTTTCTGCACAA 59.679 34.615 0.00 0.00 0.00 3.33
2233 2343 9.442047 AGATACACTCCAAATCTAAACTTTCTG 57.558 33.333 0.00 0.00 0.00 3.02
2425 2536 8.051535 ACTCTCAATGAATGATCTTATTGGTGT 58.948 33.333 0.00 0.49 37.44 4.16
2723 2868 3.543665 GTTAAGGTGTTGTGTGGTGGTA 58.456 45.455 0.00 0.00 0.00 3.25
2743 2888 5.722021 AATTCATCGCAAAGTAAAAGGGT 57.278 34.783 0.00 0.00 0.00 4.34
2775 2949 1.563410 CCAGGAGCTCCCTCTTTTCAT 59.437 52.381 29.54 4.11 45.60 2.57
2780 2954 0.415429 TTCTCCAGGAGCTCCCTCTT 59.585 55.000 29.54 7.91 45.60 2.85
2781 2955 0.032217 CTTCTCCAGGAGCTCCCTCT 60.032 60.000 29.54 8.34 45.60 3.69
2808 2984 7.177216 TGCAATCAGAACCATTACTCAAGAAAT 59.823 33.333 0.00 0.00 0.00 2.17
2839 3016 2.497138 TGAAGTGCAAGGTGAGTGATG 58.503 47.619 0.00 0.00 0.00 3.07
2843 3020 1.610522 GCATTGAAGTGCAAGGTGAGT 59.389 47.619 0.00 0.00 44.43 3.41
2926 3103 2.391389 GCCTTCCTCGAAGCGGTTG 61.391 63.158 3.70 0.00 38.24 3.77
2987 3164 2.488347 GGTTATTATCGTGGCATGGGGT 60.488 50.000 6.90 0.00 0.00 4.95
3008 3185 1.942657 CTGCGGTACATGAATGGGAAG 59.057 52.381 0.00 0.00 0.00 3.46
3010 3187 0.463654 GCTGCGGTACATGAATGGGA 60.464 55.000 0.00 0.00 0.00 4.37
3031 3208 1.604593 GAAGCAGCATGGGGTGTGT 60.605 57.895 0.00 0.00 44.31 3.72
3118 3295 3.348647 TTCTGGCCGAAGATCAAATCA 57.651 42.857 0.00 0.00 0.00 2.57
3131 3308 1.200948 GAGTCATGCAAACTTCTGGCC 59.799 52.381 0.00 0.00 0.00 5.36
3253 3474 2.100991 CTTGGCGCCTGCGAAATC 59.899 61.111 29.70 0.00 44.10 2.17
3347 3575 2.513204 CCAGATGAGCAGCCGTGG 60.513 66.667 0.00 0.00 0.00 4.94
3419 3648 1.075536 TGTGGTACAGAGGAGAGCTGA 59.924 52.381 0.00 0.00 41.80 4.26
3471 3700 4.036262 TGTGTAACAGAACCAATGCAGAAC 59.964 41.667 0.00 0.00 45.67 3.01
3824 4053 1.963515 GAACCAGGTCCAAAAGCACAT 59.036 47.619 0.00 0.00 0.00 3.21
3839 4068 4.079253 GTGATAGAAGCCTTTTGGAACCA 58.921 43.478 0.00 0.00 44.07 3.67
3849 4078 2.836981 AGCTTGTGAGTGATAGAAGCCT 59.163 45.455 0.00 0.00 43.23 4.58
3912 4141 2.209838 ACTGTGAGTCTGTGACAACG 57.790 50.000 0.46 0.00 34.60 4.10
3983 4213 3.853355 TGAAACAAAATGTTGGCCCAT 57.147 38.095 0.00 0.00 40.14 4.00
4062 4292 9.271828 ACCAATTTTCTTTTTGGCTATGTTAAG 57.728 29.630 1.72 0.00 45.13 1.85
4063 4293 9.620259 AACCAATTTTCTTTTTGGCTATGTTAA 57.380 25.926 1.72 0.00 45.13 2.01
4064 4294 9.267084 GAACCAATTTTCTTTTTGGCTATGTTA 57.733 29.630 1.72 0.00 45.13 2.41
4067 4297 7.967890 AGAACCAATTTTCTTTTTGGCTATG 57.032 32.000 1.72 0.00 45.13 2.23
4124 4354 6.258230 TGGCATAGAAATCTGACAACAAAG 57.742 37.500 0.00 0.00 0.00 2.77
4230 4461 2.920490 CTCTCGCTCAACAGTAGCTTTC 59.080 50.000 0.00 0.00 37.85 2.62
4359 4590 4.608948 AGCTTGAGTACTACTGTGCTTT 57.391 40.909 0.00 0.00 39.21 3.51
4437 4672 0.527565 CAGAAATGGGAGCCAAACCG 59.472 55.000 0.00 0.00 36.95 4.44
4459 4696 2.287373 GCATGTGTAGCTCAGATGAAGC 59.713 50.000 20.06 7.48 46.55 3.86
4474 4711 0.892755 AGCAGAAACCATGGCATGTG 59.107 50.000 24.80 16.90 0.00 3.21
4492 4730 2.099592 GTCTCAGATCAGTCCTGCAGAG 59.900 54.545 17.39 5.49 0.00 3.35
4493 4731 2.098614 GTCTCAGATCAGTCCTGCAGA 58.901 52.381 17.39 0.00 0.00 4.26
4494 4732 2.101783 AGTCTCAGATCAGTCCTGCAG 58.898 52.381 6.78 6.78 0.00 4.41
4587 4825 1.977009 ATCGACGTCCAGGTCTGCA 60.977 57.895 10.58 0.00 34.75 4.41
4597 4835 0.803117 TCTGACCTGACATCGACGTC 59.197 55.000 4.33 4.33 36.40 4.34
4774 5013 5.663456 TCCTTATTCTCATTTGCAAATGGC 58.337 37.500 38.51 0.00 44.51 4.40
4789 5028 6.002704 ACAATGGATCAGCATCTCCTTATTC 58.997 40.000 0.00 0.00 32.47 1.75
4889 5159 2.170166 CTGATTAAGGCCCAGCAACAA 58.830 47.619 0.00 0.00 0.00 2.83
4906 5184 3.748048 GCTAAACACAAGCACAGATCTGA 59.252 43.478 29.27 0.89 39.83 3.27
4940 5218 1.762957 GACAGCCCATCTACAAGCCTA 59.237 52.381 0.00 0.00 0.00 3.93
5028 5340 6.650120 TGAGTACTCCAATAAGTTTGATCCC 58.350 40.000 20.11 0.00 0.00 3.85
5029 5341 7.556844 TCTGAGTACTCCAATAAGTTTGATCC 58.443 38.462 20.11 0.00 0.00 3.36
5033 5345 7.872993 TGACTTCTGAGTACTCCAATAAGTTTG 59.127 37.037 20.11 7.53 35.88 2.93
5092 5407 0.106769 ATGTGTGGCGCATGGGAATA 60.107 50.000 14.90 0.00 33.04 1.75
5107 5422 8.737168 TTCTGAGATAGGTCCAAATTAATGTG 57.263 34.615 0.00 0.00 0.00 3.21
5113 5428 5.707066 AGCTTCTGAGATAGGTCCAAATT 57.293 39.130 0.00 0.00 0.00 1.82
5114 5429 7.385894 AATAGCTTCTGAGATAGGTCCAAAT 57.614 36.000 0.00 0.00 0.00 2.32
5115 5430 6.183361 GGAATAGCTTCTGAGATAGGTCCAAA 60.183 42.308 0.00 0.00 34.44 3.28
5116 5431 5.305644 GGAATAGCTTCTGAGATAGGTCCAA 59.694 44.000 0.00 0.00 34.44 3.53
5129 5444 6.768381 GCAAGGTACATTTAGGAATAGCTTCT 59.232 38.462 0.00 0.00 0.00 2.85
5140 5455 4.322424 GGGGGTTTTGCAAGGTACATTTAG 60.322 45.833 0.00 0.00 0.00 1.85
5170 5491 1.084370 CGAATTCGAGGTGGCCACTC 61.084 60.000 33.91 25.69 43.02 3.51
5183 5504 2.866762 CCGGAGACCATCTTTCGAATTC 59.133 50.000 0.00 0.00 0.00 2.17
5184 5505 2.906354 CCGGAGACCATCTTTCGAATT 58.094 47.619 0.00 0.00 0.00 2.17
5185 5506 1.473434 GCCGGAGACCATCTTTCGAAT 60.473 52.381 5.05 0.00 0.00 3.34
5186 5507 0.108329 GCCGGAGACCATCTTTCGAA 60.108 55.000 5.05 0.00 0.00 3.71
5187 5508 1.515954 GCCGGAGACCATCTTTCGA 59.484 57.895 5.05 0.00 0.00 3.71
5188 5509 1.878522 CGCCGGAGACCATCTTTCG 60.879 63.158 5.05 0.00 0.00 3.46
5236 5557 0.530650 AAGTTGCGATCGCGATCCAT 60.531 50.000 36.16 20.61 45.51 3.41
5245 5566 5.566774 CACAATTGAAGAGAAAGTTGCGATC 59.433 40.000 13.59 0.00 0.00 3.69
5266 5587 1.454847 GGTGGTGGTTCTTGGCACA 60.455 57.895 0.00 0.00 0.00 4.57
5271 5592 1.821753 TGTGTTTGGTGGTGGTTCTTG 59.178 47.619 0.00 0.00 0.00 3.02
5297 5619 1.103398 CATGCCCGGTTCATCCTTCC 61.103 60.000 0.00 0.00 0.00 3.46
5301 5623 0.107410 TACACATGCCCGGTTCATCC 60.107 55.000 0.00 0.00 0.00 3.51
5302 5624 1.299541 CTACACATGCCCGGTTCATC 58.700 55.000 0.00 0.00 0.00 2.92
5308 5630 1.815421 GCTCACTACACATGCCCGG 60.815 63.158 0.00 0.00 0.00 5.73
5397 5722 1.953686 CCTTTCGGAGCAAAAACCTCA 59.046 47.619 0.00 0.00 0.00 3.86
5436 5775 0.666274 TTAGAGCACGCGTCAAGTGG 60.666 55.000 9.86 0.00 39.80 4.00
5442 5781 2.615618 CGCATTAGAGCACGCGTC 59.384 61.111 9.86 4.43 42.66 5.19
5484 5852 1.671901 CCAAAGGGCGTGTGGTTTGT 61.672 55.000 8.28 0.00 0.00 2.83
5495 5863 4.011517 TCGGTCCGACCAAAGGGC 62.012 66.667 17.87 0.00 38.47 5.19
5506 5874 3.352338 AAGGCGTCATCGTCGGTCC 62.352 63.158 0.00 0.00 46.96 4.46
5511 5879 0.992802 GAAGTGAAGGCGTCATCGTC 59.007 55.000 6.37 5.06 38.90 4.20
5512 5880 0.389948 GGAAGTGAAGGCGTCATCGT 60.390 55.000 6.37 0.00 38.90 3.73
5513 5881 0.108615 AGGAAGTGAAGGCGTCATCG 60.109 55.000 6.37 0.00 38.90 3.84
5518 5926 5.784578 AATTTAAAAGGAAGTGAAGGCGT 57.215 34.783 0.00 0.00 0.00 5.68
5541 5949 8.166422 ACATGAAGTACTATGTCATCGTCATA 57.834 34.615 0.00 0.00 32.32 2.15
5542 5950 7.043961 ACATGAAGTACTATGTCATCGTCAT 57.956 36.000 0.00 1.08 32.32 3.06
5543 5951 6.451064 ACATGAAGTACTATGTCATCGTCA 57.549 37.500 0.00 0.00 32.32 4.35
5544 5952 9.464714 AATTACATGAAGTACTATGTCATCGTC 57.535 33.333 13.37 0.00 38.41 4.20
5545 5953 9.817809 AAATTACATGAAGTACTATGTCATCGT 57.182 29.630 13.37 12.54 38.41 3.73
5550 5958 7.373441 GCGCAAAATTACATGAAGTACTATGTC 59.627 37.037 13.37 0.65 38.41 3.06
5551 5959 7.148323 TGCGCAAAATTACATGAAGTACTATGT 60.148 33.333 8.16 14.23 40.39 2.29
5552 5960 7.186128 TGCGCAAAATTACATGAAGTACTATG 58.814 34.615 8.16 0.00 30.91 2.23
5553 5961 7.315247 TGCGCAAAATTACATGAAGTACTAT 57.685 32.000 8.16 0.00 30.91 2.12
5554 5962 6.729391 TGCGCAAAATTACATGAAGTACTA 57.271 33.333 8.16 0.00 30.91 1.82
5555 5963 5.621197 TGCGCAAAATTACATGAAGTACT 57.379 34.783 8.16 0.00 30.91 2.73
5556 5964 6.683090 TTTGCGCAAAATTACATGAAGTAC 57.317 33.333 31.98 0.00 30.91 2.73
5557 5965 7.649705 TCTTTTTGCGCAAAATTACATGAAGTA 59.350 29.630 39.74 23.31 39.69 2.24
5558 5966 6.478344 TCTTTTTGCGCAAAATTACATGAAGT 59.522 30.769 39.74 0.00 39.69 3.01
5559 5967 6.875753 TCTTTTTGCGCAAAATTACATGAAG 58.124 32.000 39.74 30.98 39.69 3.02
5560 5968 6.834959 TCTTTTTGCGCAAAATTACATGAA 57.165 29.167 39.74 24.99 39.69 2.57
5565 5973 9.249844 GAAACATATCTTTTTGCGCAAAATTAC 57.750 29.630 39.74 20.95 39.69 1.89
5616 6041 6.966461 ACCCCAACCCAAATACCAAATATAAA 59.034 34.615 0.00 0.00 0.00 1.40
5618 6043 6.106407 ACCCCAACCCAAATACCAAATATA 57.894 37.500 0.00 0.00 0.00 0.86
5619 6044 4.966611 ACCCCAACCCAAATACCAAATAT 58.033 39.130 0.00 0.00 0.00 1.28
5620 6045 4.421574 ACCCCAACCCAAATACCAAATA 57.578 40.909 0.00 0.00 0.00 1.40
5621 6046 3.283712 ACCCCAACCCAAATACCAAAT 57.716 42.857 0.00 0.00 0.00 2.32
5624 6049 1.483307 CCAACCCCAACCCAAATACCA 60.483 52.381 0.00 0.00 0.00 3.25
5695 6197 1.032014 GGCTAGAGCAGAGAGGACTG 58.968 60.000 3.54 0.00 44.36 3.51
5696 6198 0.926293 AGGCTAGAGCAGAGAGGACT 59.074 55.000 3.54 0.00 44.36 3.85
5697 6199 2.158667 ACTAGGCTAGAGCAGAGAGGAC 60.159 54.545 27.59 0.00 44.36 3.85
5698 6200 2.105821 GACTAGGCTAGAGCAGAGAGGA 59.894 54.545 27.59 0.00 44.36 3.71
5699 6201 2.504367 GACTAGGCTAGAGCAGAGAGG 58.496 57.143 27.59 0.00 44.36 3.69
5700 6202 2.143122 CGACTAGGCTAGAGCAGAGAG 58.857 57.143 27.59 0.69 44.36 3.20
5701 6203 1.812324 GCGACTAGGCTAGAGCAGAGA 60.812 57.143 27.59 0.00 44.36 3.10
5702 6204 0.591170 GCGACTAGGCTAGAGCAGAG 59.409 60.000 27.59 12.01 44.36 3.35
5703 6205 0.820074 GGCGACTAGGCTAGAGCAGA 60.820 60.000 31.09 0.71 44.36 4.26
5704 6206 1.657556 GGCGACTAGGCTAGAGCAG 59.342 63.158 31.09 19.74 44.36 4.24
5705 6207 3.843304 GGCGACTAGGCTAGAGCA 58.157 61.111 31.09 2.02 44.36 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.