Multiple sequence alignment - TraesCS6D01G392700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G392700 chr6D 100.000 6469 0 0 1 6469 467036898 467030430 0.000000e+00 11947.0
1 TraesCS6D01G392700 chr6D 86.585 164 17 2 815 977 461820784 461820625 6.670000e-40 176.0
2 TraesCS6D01G392700 chr6B 96.371 5539 137 30 981 6469 712240096 712234572 0.000000e+00 9057.0
3 TraesCS6D01G392700 chr6B 92.222 180 7 4 1 173 712241311 712241132 1.390000e-61 248.0
4 TraesCS6D01G392700 chr6B 79.054 148 23 4 831 975 604325962 604326104 1.920000e-15 95.3
5 TraesCS6D01G392700 chr6A 95.631 4097 126 17 2274 6335 613330678 613326600 0.000000e+00 6525.0
6 TraesCS6D01G392700 chr6A 96.962 1251 35 1 982 2229 613331921 613330671 0.000000e+00 2097.0
7 TraesCS6D01G392700 chr6A 90.270 185 11 2 1 184 613332886 613332708 1.080000e-57 235.0
8 TraesCS6D01G392700 chr6A 94.203 138 6 1 6332 6469 613310307 613310172 6.570000e-50 209.0
9 TraesCS6D01G392700 chr6A 94.203 138 6 1 6332 6469 613319397 613319262 6.570000e-50 209.0
10 TraesCS6D01G392700 chr6A 97.727 44 1 0 6293 6336 613310373 613310330 6.960000e-10 76.8
11 TraesCS6D01G392700 chr6A 97.727 44 1 0 6293 6336 613319463 613319420 6.960000e-10 76.8
12 TraesCS6D01G392700 chr2D 89.149 470 41 9 4314 4778 595721252 595720788 1.560000e-160 577.0
13 TraesCS6D01G392700 chr2D 100.000 39 0 0 4220 4258 434358159 434358197 9.000000e-09 73.1
14 TraesCS6D01G392700 chr7B 87.447 470 48 10 4314 4778 397830010 397830473 1.230000e-146 531.0
15 TraesCS6D01G392700 chr7B 83.871 155 10 5 1 140 616528895 616528741 4.070000e-27 134.0
16 TraesCS6D01G392700 chr3D 92.571 175 10 1 4604 4778 91313682 91313853 1.390000e-61 248.0
17 TraesCS6D01G392700 chrUn 94.203 138 6 1 6332 6469 328090349 328090214 6.570000e-50 209.0
18 TraesCS6D01G392700 chrUn 97.727 44 1 0 6293 6336 328090415 328090372 6.960000e-10 76.8
19 TraesCS6D01G392700 chr5A 80.478 251 38 10 547 792 585228116 585228360 1.430000e-41 182.0
20 TraesCS6D01G392700 chr2B 80.435 230 35 8 567 794 39873390 39873169 4.010000e-37 167.0
21 TraesCS6D01G392700 chr2B 85.106 141 13 4 1 134 73103285 73103146 3.150000e-28 137.0
22 TraesCS6D01G392700 chr2B 91.358 81 7 0 60 140 780742786 780742706 1.910000e-20 111.0
23 TraesCS6D01G392700 chr2B 82.143 140 9 5 2 125 735828607 735828746 8.870000e-19 106.0
24 TraesCS6D01G392700 chr2B 92.453 53 2 1 4208 4258 423659906 423659854 2.500000e-09 75.0
25 TraesCS6D01G392700 chr2B 81.609 87 6 9 718 797 769521675 769521758 5.410000e-06 63.9
26 TraesCS6D01G392700 chr5B 80.663 181 28 5 799 977 688047463 688047288 4.070000e-27 134.0
27 TraesCS6D01G392700 chr5B 95.652 46 1 1 4220 4265 45388528 45388572 9.000000e-09 73.1
28 TraesCS6D01G392700 chr5B 82.353 68 9 3 728 795 462555141 462555077 1.000000e-03 56.5
29 TraesCS6D01G392700 chr4B 80.435 184 27 5 796 975 625626005 625625827 1.460000e-26 132.0
30 TraesCS6D01G392700 chr3B 84.286 140 6 4 2 125 807586171 807586310 8.810000e-24 122.0
31 TraesCS6D01G392700 chr3B 93.333 75 5 0 60 134 456360297 456360223 1.910000e-20 111.0
32 TraesCS6D01G392700 chr3B 95.556 45 2 0 4220 4264 354415024 354414980 9.000000e-09 73.1
33 TraesCS6D01G392700 chr4A 82.857 140 8 4 2 125 111068134 111068273 1.910000e-20 111.0
34 TraesCS6D01G392700 chr4A 82.558 86 13 2 4210 4295 514413369 514413286 2.500000e-09 75.0
35 TraesCS6D01G392700 chr4A 97.561 41 1 0 4220 4260 56270133 56270093 3.240000e-08 71.3
36 TraesCS6D01G392700 chr1B 91.358 81 7 0 54 134 85713605 85713685 1.910000e-20 111.0
37 TraesCS6D01G392700 chr7A 81.159 138 11 7 2 125 659734602 659734738 5.340000e-16 97.1
38 TraesCS6D01G392700 chr7A 85.938 64 6 3 6021 6082 4895478 4895540 1.510000e-06 65.8
39 TraesCS6D01G392700 chr7D 87.143 70 6 3 6015 6082 4992913 4992981 6.960000e-10 76.8
40 TraesCS6D01G392700 chr4D 100.000 37 0 0 4220 4256 50885755 50885719 1.160000e-07 69.4
41 TraesCS6D01G392700 chr5D 90.909 44 2 2 753 795 27510738 27510780 2.520000e-04 58.4
42 TraesCS6D01G392700 chr5D 90.909 44 2 2 753 795 27538247 27538205 2.520000e-04 58.4
43 TraesCS6D01G392700 chr5D 100.000 30 0 0 766 795 385116509 385116480 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G392700 chr6D 467030430 467036898 6468 True 11947.000000 11947 100.000000 1 6469 1 chr6D.!!$R2 6468
1 TraesCS6D01G392700 chr6B 712234572 712241311 6739 True 4652.500000 9057 94.296500 1 6469 2 chr6B.!!$R1 6468
2 TraesCS6D01G392700 chr6A 613326600 613332886 6286 True 2952.333333 6525 94.287667 1 6335 3 chr6A.!!$R3 6334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 383 0.035739 TGGCCGTCAACTCTTAACCC 59.964 55.000 0.00 0.0 0.00 4.11 F
698 971 0.038067 TGCGCACGGTACACTACAAT 60.038 50.000 5.66 0.0 0.00 2.71 F
699 972 0.368907 GCGCACGGTACACTACAATG 59.631 55.000 0.30 0.0 0.00 2.82 F
700 973 0.368907 CGCACGGTACACTACAATGC 59.631 55.000 0.00 0.0 37.57 3.56 F
975 1547 0.745845 AATTGCTAGCTCCGCCACTG 60.746 55.000 17.23 0.0 0.00 3.66 F
1713 2291 0.992431 AGGCTGGAGATGGCAGGAAT 60.992 55.000 0.00 0.0 0.00 3.01 F
2205 2783 1.266989 GTGTGGCCTGCTAACTTTGTC 59.733 52.381 3.32 0.0 0.00 3.18 F
2662 3240 2.023673 CAACTGTTGTCCAGGAAGCAA 58.976 47.619 12.30 0.0 46.06 3.91 F
3031 3609 2.882324 TGTTCCTTTCGGTTTTGTTGC 58.118 42.857 0.00 0.0 0.00 4.17 F
4949 5546 0.097674 GCTGCTCTAACCGCACATTG 59.902 55.000 0.00 0.0 33.19 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2853 2.000447 GGCAACTTCGGTGACTCATAC 59.000 52.381 0.00 0.00 0.00 2.39 R
2862 3440 1.135972 CCTGATCGTTGCAAGGTTTCG 60.136 52.381 17.96 9.36 0.00 3.46 R
3031 3609 7.877612 ACTGCTTTTAATAAATTGGTTGAAGGG 59.122 33.333 0.00 0.00 0.00 3.95 R
3056 3634 5.098211 GCAGGAAGCTGTTTATCAATTCAC 58.902 41.667 0.00 0.00 41.15 3.18 R
3353 3931 7.746703 GGAAAACTCCCACCATATATAAGTCT 58.253 38.462 0.00 0.00 0.00 3.24 R
3383 3962 2.558359 AGGTGTTGCCACTAAAATCTGC 59.442 45.455 0.00 0.00 41.53 4.26 R
4433 5030 3.742433 ATATGCTCTCGAAGAAGGTGG 57.258 47.619 0.00 0.00 34.09 4.61 R
4900 5497 4.178545 AGACAACCATGCAAAGTAATGC 57.821 40.909 0.00 0.00 46.58 3.56 R
5400 5997 1.603326 GGCGGTTTTCCTAAACAACGA 59.397 47.619 0.00 0.00 44.37 3.85 R
5952 6550 1.790481 GCCTTTGACGTTCGCATTAGC 60.790 52.381 0.00 0.00 37.42 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 164 0.533755 CCATCTCCGATCTGCCAACC 60.534 60.000 0.00 0.00 0.00 3.77
184 192 2.262915 CAGCGAGGGAAGCGAAGT 59.737 61.111 0.00 0.00 40.04 3.01
185 193 1.807573 CAGCGAGGGAAGCGAAGTC 60.808 63.158 0.00 0.00 40.04 3.01
187 195 1.807573 GCGAGGGAAGCGAAGTCAG 60.808 63.158 0.00 0.00 0.00 3.51
188 196 1.807573 CGAGGGAAGCGAAGTCAGC 60.808 63.158 0.00 0.00 0.00 4.26
190 198 0.739112 GAGGGAAGCGAAGTCAGCAG 60.739 60.000 0.00 0.00 37.01 4.24
191 199 2.394563 GGGAAGCGAAGTCAGCAGC 61.395 63.158 0.00 0.00 37.01 5.25
192 200 1.375268 GGAAGCGAAGTCAGCAGCT 60.375 57.895 0.00 0.00 42.35 4.24
193 201 1.633852 GGAAGCGAAGTCAGCAGCTG 61.634 60.000 17.10 17.10 40.17 4.24
194 202 1.633852 GAAGCGAAGTCAGCAGCTGG 61.634 60.000 22.62 6.90 40.17 4.85
195 203 3.797546 GCGAAGTCAGCAGCTGGC 61.798 66.667 20.03 20.03 45.30 4.85
245 253 4.363990 CTGTCAGCCACCGCTCGT 62.364 66.667 0.00 0.00 43.95 4.18
246 254 4.357947 TGTCAGCCACCGCTCGTC 62.358 66.667 0.00 0.00 43.95 4.20
283 291 4.803426 GCTGGACTCCGCGACCTG 62.803 72.222 8.23 10.52 0.00 4.00
284 292 3.062466 CTGGACTCCGCGACCTGA 61.062 66.667 8.23 0.00 0.00 3.86
285 293 2.599281 TGGACTCCGCGACCTGAA 60.599 61.111 8.23 0.00 0.00 3.02
286 294 1.949847 CTGGACTCCGCGACCTGAAT 61.950 60.000 8.23 0.00 0.00 2.57
287 295 1.519455 GGACTCCGCGACCTGAATG 60.519 63.158 8.23 0.00 0.00 2.67
288 296 2.125512 ACTCCGCGACCTGAATGC 60.126 61.111 8.23 0.00 0.00 3.56
293 301 2.892425 GCGACCTGAATGCGGAGG 60.892 66.667 0.00 0.00 35.26 4.30
294 302 2.892425 CGACCTGAATGCGGAGGC 60.892 66.667 0.00 0.00 40.52 4.70
295 303 2.892425 GACCTGAATGCGGAGGCG 60.892 66.667 0.00 0.00 44.10 5.52
296 304 3.665675 GACCTGAATGCGGAGGCGT 62.666 63.158 0.00 0.00 44.10 5.68
297 305 2.892425 CCTGAATGCGGAGGCGTC 60.892 66.667 0.00 0.00 44.10 5.19
298 306 2.125552 CTGAATGCGGAGGCGTCA 60.126 61.111 8.91 0.00 44.10 4.35
299 307 1.522355 CTGAATGCGGAGGCGTCAT 60.522 57.895 8.91 0.00 44.10 3.06
300 308 1.493950 CTGAATGCGGAGGCGTCATC 61.494 60.000 8.91 0.00 44.10 2.92
301 309 1.521457 GAATGCGGAGGCGTCATCA 60.521 57.895 8.91 5.58 44.10 3.07
302 310 1.078497 AATGCGGAGGCGTCATCAA 60.078 52.632 8.91 0.00 44.10 2.57
303 311 1.369091 AATGCGGAGGCGTCATCAAC 61.369 55.000 8.91 0.00 44.10 3.18
304 312 2.125512 GCGGAGGCGTCATCAACT 60.126 61.111 8.91 0.00 0.00 3.16
305 313 1.741770 GCGGAGGCGTCATCAACTT 60.742 57.895 8.91 0.00 0.00 2.66
306 314 1.970917 GCGGAGGCGTCATCAACTTG 61.971 60.000 8.91 0.00 0.00 3.16
307 315 0.670546 CGGAGGCGTCATCAACTTGT 60.671 55.000 8.91 0.00 0.00 3.16
308 316 1.523758 GGAGGCGTCATCAACTTGTT 58.476 50.000 8.91 0.00 0.00 2.83
309 317 1.464997 GGAGGCGTCATCAACTTGTTC 59.535 52.381 8.91 0.00 0.00 3.18
310 318 1.126846 GAGGCGTCATCAACTTGTTCG 59.873 52.381 0.52 0.00 0.00 3.95
311 319 1.144969 GGCGTCATCAACTTGTTCGA 58.855 50.000 0.00 0.00 0.00 3.71
312 320 1.529438 GGCGTCATCAACTTGTTCGAA 59.471 47.619 0.00 0.00 0.00 3.71
313 321 2.411547 GGCGTCATCAACTTGTTCGAAG 60.412 50.000 0.00 0.00 0.00 3.79
314 322 2.411547 GCGTCATCAACTTGTTCGAAGG 60.412 50.000 0.00 0.00 0.00 3.46
315 323 2.411547 CGTCATCAACTTGTTCGAAGGC 60.412 50.000 0.00 0.00 0.00 4.35
316 324 1.798223 TCATCAACTTGTTCGAAGGCG 59.202 47.619 0.00 0.00 39.35 5.52
317 325 1.135972 CATCAACTTGTTCGAAGGCGG 60.136 52.381 0.00 0.00 38.28 6.13
318 326 0.105224 TCAACTTGTTCGAAGGCGGA 59.895 50.000 0.00 0.00 38.28 5.54
319 327 0.941542 CAACTTGTTCGAAGGCGGAA 59.058 50.000 0.00 0.00 38.28 4.30
320 328 1.332375 CAACTTGTTCGAAGGCGGAAA 59.668 47.619 0.00 0.00 38.28 3.13
321 329 0.942252 ACTTGTTCGAAGGCGGAAAC 59.058 50.000 0.00 0.00 38.28 2.78
322 330 0.237498 CTTGTTCGAAGGCGGAAACC 59.763 55.000 0.00 0.00 38.28 3.27
323 331 0.179040 TTGTTCGAAGGCGGAAACCT 60.179 50.000 0.00 0.00 43.91 3.50
335 343 2.704572 CGGAAACCTTTCTGCTCATCT 58.295 47.619 0.00 0.00 36.82 2.90
336 344 3.861840 CGGAAACCTTTCTGCTCATCTA 58.138 45.455 0.00 0.00 36.82 1.98
337 345 3.619038 CGGAAACCTTTCTGCTCATCTAC 59.381 47.826 0.00 0.00 36.82 2.59
338 346 4.579869 GGAAACCTTTCTGCTCATCTACA 58.420 43.478 0.00 0.00 37.35 2.74
339 347 4.393371 GGAAACCTTTCTGCTCATCTACAC 59.607 45.833 0.00 0.00 37.35 2.90
340 348 3.618690 ACCTTTCTGCTCATCTACACC 57.381 47.619 0.00 0.00 0.00 4.16
341 349 2.906389 ACCTTTCTGCTCATCTACACCA 59.094 45.455 0.00 0.00 0.00 4.17
342 350 3.521126 ACCTTTCTGCTCATCTACACCAT 59.479 43.478 0.00 0.00 0.00 3.55
343 351 4.125703 CCTTTCTGCTCATCTACACCATC 58.874 47.826 0.00 0.00 0.00 3.51
344 352 4.383444 CCTTTCTGCTCATCTACACCATCA 60.383 45.833 0.00 0.00 0.00 3.07
345 353 4.397481 TTCTGCTCATCTACACCATCAG 57.603 45.455 0.00 0.00 0.00 2.90
346 354 3.369175 TCTGCTCATCTACACCATCAGT 58.631 45.455 0.00 0.00 0.00 3.41
347 355 4.536765 TCTGCTCATCTACACCATCAGTA 58.463 43.478 0.00 0.00 0.00 2.74
348 356 4.956075 TCTGCTCATCTACACCATCAGTAA 59.044 41.667 0.00 0.00 0.00 2.24
349 357 5.422012 TCTGCTCATCTACACCATCAGTAAA 59.578 40.000 0.00 0.00 0.00 2.01
350 358 6.048732 TGCTCATCTACACCATCAGTAAAA 57.951 37.500 0.00 0.00 0.00 1.52
351 359 6.472016 TGCTCATCTACACCATCAGTAAAAA 58.528 36.000 0.00 0.00 0.00 1.94
352 360 6.371548 TGCTCATCTACACCATCAGTAAAAAC 59.628 38.462 0.00 0.00 0.00 2.43
353 361 6.183360 GCTCATCTACACCATCAGTAAAAACC 60.183 42.308 0.00 0.00 0.00 3.27
354 362 7.016153 TCATCTACACCATCAGTAAAAACCT 57.984 36.000 0.00 0.00 0.00 3.50
355 363 7.458397 TCATCTACACCATCAGTAAAAACCTT 58.542 34.615 0.00 0.00 0.00 3.50
356 364 7.942341 TCATCTACACCATCAGTAAAAACCTTT 59.058 33.333 0.00 0.00 0.00 3.11
357 365 7.504924 TCTACACCATCAGTAAAAACCTTTG 57.495 36.000 0.00 0.00 0.00 2.77
358 366 5.529581 ACACCATCAGTAAAAACCTTTGG 57.470 39.130 0.00 0.00 0.00 3.28
359 367 4.202212 ACACCATCAGTAAAAACCTTTGGC 60.202 41.667 0.00 0.00 0.00 4.52
360 368 3.323691 ACCATCAGTAAAAACCTTTGGCC 59.676 43.478 0.00 0.00 0.00 5.36
361 369 3.574614 CATCAGTAAAAACCTTTGGCCG 58.425 45.455 0.00 0.00 0.00 6.13
362 370 2.657143 TCAGTAAAAACCTTTGGCCGT 58.343 42.857 0.00 0.00 0.00 5.68
363 371 2.619646 TCAGTAAAAACCTTTGGCCGTC 59.380 45.455 0.00 0.00 0.00 4.79
364 372 2.359531 CAGTAAAAACCTTTGGCCGTCA 59.640 45.455 0.00 0.00 0.00 4.35
365 373 3.025262 AGTAAAAACCTTTGGCCGTCAA 58.975 40.909 0.00 0.00 0.00 3.18
366 374 2.303163 AAAAACCTTTGGCCGTCAAC 57.697 45.000 0.00 0.00 34.67 3.18
367 375 1.480789 AAAACCTTTGGCCGTCAACT 58.519 45.000 0.00 0.00 34.67 3.16
368 376 1.029681 AAACCTTTGGCCGTCAACTC 58.970 50.000 0.00 0.00 34.67 3.01
369 377 0.182775 AACCTTTGGCCGTCAACTCT 59.817 50.000 0.00 0.00 34.67 3.24
370 378 0.182775 ACCTTTGGCCGTCAACTCTT 59.817 50.000 0.00 0.00 34.67 2.85
371 379 1.418637 ACCTTTGGCCGTCAACTCTTA 59.581 47.619 0.00 0.00 34.67 2.10
372 380 2.158726 ACCTTTGGCCGTCAACTCTTAA 60.159 45.455 0.00 0.00 34.67 1.85
373 381 2.225727 CCTTTGGCCGTCAACTCTTAAC 59.774 50.000 0.00 0.00 34.67 2.01
374 382 1.886886 TTGGCCGTCAACTCTTAACC 58.113 50.000 0.00 0.00 0.00 2.85
375 383 0.035739 TGGCCGTCAACTCTTAACCC 59.964 55.000 0.00 0.00 0.00 4.11
376 384 0.323957 GGCCGTCAACTCTTAACCCT 59.676 55.000 0.00 0.00 0.00 4.34
377 385 1.551883 GGCCGTCAACTCTTAACCCTA 59.448 52.381 0.00 0.00 0.00 3.53
378 386 2.614779 GCCGTCAACTCTTAACCCTAC 58.385 52.381 0.00 0.00 0.00 3.18
379 387 2.028748 GCCGTCAACTCTTAACCCTACA 60.029 50.000 0.00 0.00 0.00 2.74
380 388 3.582780 CCGTCAACTCTTAACCCTACAC 58.417 50.000 0.00 0.00 0.00 2.90
381 389 3.006110 CCGTCAACTCTTAACCCTACACA 59.994 47.826 0.00 0.00 0.00 3.72
382 390 3.985925 CGTCAACTCTTAACCCTACACAC 59.014 47.826 0.00 0.00 0.00 3.82
383 391 4.313282 GTCAACTCTTAACCCTACACACC 58.687 47.826 0.00 0.00 0.00 4.16
384 392 3.325716 TCAACTCTTAACCCTACACACCC 59.674 47.826 0.00 0.00 0.00 4.61
385 393 3.271153 ACTCTTAACCCTACACACCCT 57.729 47.619 0.00 0.00 0.00 4.34
390 647 4.096003 CCCTACACACCCTGCCCG 62.096 72.222 0.00 0.00 0.00 6.13
392 649 2.264794 CTACACACCCTGCCCGAC 59.735 66.667 0.00 0.00 0.00 4.79
393 650 3.642778 CTACACACCCTGCCCGACG 62.643 68.421 0.00 0.00 0.00 5.12
488 761 4.154347 GAGGCTCCTCCGCACCTG 62.154 72.222 2.15 0.00 40.77 4.00
499 772 4.803426 GCACCTGCCTCTCCGTCG 62.803 72.222 0.00 0.00 34.31 5.12
581 854 4.704833 CACCCACCGCCCAGTCTG 62.705 72.222 0.00 0.00 0.00 3.51
585 858 4.320456 CACCGCCCAGTCTGCACT 62.320 66.667 0.00 0.00 0.00 4.40
586 859 4.008933 ACCGCCCAGTCTGCACTC 62.009 66.667 0.00 0.00 0.00 3.51
587 860 4.767255 CCGCCCAGTCTGCACTCC 62.767 72.222 0.00 0.00 0.00 3.85
589 862 4.767255 GCCCAGTCTGCACTCCGG 62.767 72.222 0.00 0.00 0.00 5.14
590 863 4.767255 CCCAGTCTGCACTCCGGC 62.767 72.222 0.00 0.00 0.00 6.13
591 864 4.007644 CCAGTCTGCACTCCGGCA 62.008 66.667 0.00 0.00 42.53 5.69
592 865 2.740055 CAGTCTGCACTCCGGCAC 60.740 66.667 0.00 0.00 39.25 5.01
593 866 2.919856 AGTCTGCACTCCGGCACT 60.920 61.111 0.00 0.00 39.25 4.40
594 867 2.433318 GTCTGCACTCCGGCACTC 60.433 66.667 0.00 0.00 39.25 3.51
595 868 4.056125 TCTGCACTCCGGCACTCG 62.056 66.667 0.00 0.00 39.25 4.18
617 890 1.781786 TCAGCCTGATCTGAGGTACC 58.218 55.000 2.73 2.73 38.11 3.34
618 891 1.007118 TCAGCCTGATCTGAGGTACCA 59.993 52.381 15.94 0.00 38.11 3.25
619 892 2.045524 CAGCCTGATCTGAGGTACCAT 58.954 52.381 15.94 0.00 36.19 3.55
620 893 2.437281 CAGCCTGATCTGAGGTACCATT 59.563 50.000 15.94 0.00 36.19 3.16
621 894 3.118112 CAGCCTGATCTGAGGTACCATTT 60.118 47.826 15.94 0.00 36.19 2.32
622 895 3.525199 AGCCTGATCTGAGGTACCATTTT 59.475 43.478 15.94 0.00 35.29 1.82
623 896 4.018050 AGCCTGATCTGAGGTACCATTTTT 60.018 41.667 15.94 0.00 35.29 1.94
624 897 4.336713 GCCTGATCTGAGGTACCATTTTTC 59.663 45.833 15.94 2.62 35.29 2.29
625 898 5.500234 CCTGATCTGAGGTACCATTTTTCA 58.500 41.667 15.94 7.65 0.00 2.69
626 899 5.945784 CCTGATCTGAGGTACCATTTTTCAA 59.054 40.000 15.94 0.76 0.00 2.69
627 900 6.604795 CCTGATCTGAGGTACCATTTTTCAAT 59.395 38.462 15.94 5.31 0.00 2.57
628 901 7.201767 CCTGATCTGAGGTACCATTTTTCAATC 60.202 40.741 15.94 13.13 0.00 2.67
629 902 6.603201 TGATCTGAGGTACCATTTTTCAATCC 59.397 38.462 15.94 1.36 0.00 3.01
630 903 5.261216 TCTGAGGTACCATTTTTCAATCCC 58.739 41.667 15.94 0.00 0.00 3.85
631 904 4.349365 TGAGGTACCATTTTTCAATCCCC 58.651 43.478 15.94 0.00 0.00 4.81
632 905 3.704566 GAGGTACCATTTTTCAATCCCCC 59.295 47.826 15.94 0.00 0.00 5.40
633 906 3.078305 AGGTACCATTTTTCAATCCCCCA 59.922 43.478 15.94 0.00 0.00 4.96
634 907 3.841255 GGTACCATTTTTCAATCCCCCAA 59.159 43.478 7.15 0.00 0.00 4.12
635 908 4.473196 GGTACCATTTTTCAATCCCCCAAT 59.527 41.667 7.15 0.00 0.00 3.16
636 909 5.045213 GGTACCATTTTTCAATCCCCCAATT 60.045 40.000 7.15 0.00 0.00 2.32
637 910 5.597430 ACCATTTTTCAATCCCCCAATTT 57.403 34.783 0.00 0.00 0.00 1.82
638 911 5.963092 ACCATTTTTCAATCCCCCAATTTT 58.037 33.333 0.00 0.00 0.00 1.82
639 912 6.009589 ACCATTTTTCAATCCCCCAATTTTC 58.990 36.000 0.00 0.00 0.00 2.29
640 913 5.123661 CCATTTTTCAATCCCCCAATTTTCG 59.876 40.000 0.00 0.00 0.00 3.46
641 914 5.552870 TTTTTCAATCCCCCAATTTTCGA 57.447 34.783 0.00 0.00 0.00 3.71
642 915 5.753721 TTTTCAATCCCCCAATTTTCGAT 57.246 34.783 0.00 0.00 0.00 3.59
643 916 5.753721 TTTCAATCCCCCAATTTTCGATT 57.246 34.783 0.00 0.00 0.00 3.34
644 917 5.753721 TTCAATCCCCCAATTTTCGATTT 57.246 34.783 0.00 0.00 0.00 2.17
645 918 6.859112 TTCAATCCCCCAATTTTCGATTTA 57.141 33.333 0.00 0.00 0.00 1.40
646 919 6.463995 TCAATCCCCCAATTTTCGATTTAG 57.536 37.500 0.00 0.00 0.00 1.85
647 920 5.362430 TCAATCCCCCAATTTTCGATTTAGG 59.638 40.000 0.00 0.00 0.00 2.69
648 921 3.637769 TCCCCCAATTTTCGATTTAGGG 58.362 45.455 0.00 0.00 34.58 3.53
649 922 3.011934 TCCCCCAATTTTCGATTTAGGGT 59.988 43.478 8.91 0.00 33.54 4.34
650 923 3.772572 CCCCCAATTTTCGATTTAGGGTT 59.227 43.478 8.91 0.00 32.90 4.11
651 924 4.957327 CCCCCAATTTTCGATTTAGGGTTA 59.043 41.667 8.91 0.00 32.90 2.85
652 925 5.068591 CCCCCAATTTTCGATTTAGGGTTAG 59.931 44.000 8.91 0.00 32.90 2.34
653 926 5.451381 CCCCAATTTTCGATTTAGGGTTAGC 60.451 44.000 8.91 0.00 32.90 3.09
654 927 5.359860 CCCAATTTTCGATTTAGGGTTAGCT 59.640 40.000 0.00 0.00 0.00 3.32
655 928 6.127451 CCCAATTTTCGATTTAGGGTTAGCTT 60.127 38.462 0.00 0.00 0.00 3.74
656 929 6.972901 CCAATTTTCGATTTAGGGTTAGCTTC 59.027 38.462 0.00 0.00 0.00 3.86
657 930 7.362574 CCAATTTTCGATTTAGGGTTAGCTTCA 60.363 37.037 0.00 0.00 0.00 3.02
658 931 6.490566 TTTTCGATTTAGGGTTAGCTTCAC 57.509 37.500 0.00 0.00 0.00 3.18
659 932 5.416271 TTCGATTTAGGGTTAGCTTCACT 57.584 39.130 0.00 0.00 0.00 3.41
660 933 4.755411 TCGATTTAGGGTTAGCTTCACTG 58.245 43.478 0.00 0.00 0.00 3.66
661 934 3.309954 CGATTTAGGGTTAGCTTCACTGC 59.690 47.826 0.00 0.00 0.00 4.40
662 935 4.518249 GATTTAGGGTTAGCTTCACTGCT 58.482 43.478 0.00 0.00 46.11 4.24
663 936 4.367039 TTTAGGGTTAGCTTCACTGCTT 57.633 40.909 0.00 0.00 43.74 3.91
664 937 2.191128 AGGGTTAGCTTCACTGCTTG 57.809 50.000 0.00 0.00 43.74 4.01
665 938 0.523519 GGGTTAGCTTCACTGCTTGC 59.476 55.000 0.00 0.00 43.74 4.01
666 939 1.528129 GGTTAGCTTCACTGCTTGCT 58.472 50.000 0.00 0.00 43.74 3.91
667 940 1.198637 GGTTAGCTTCACTGCTTGCTG 59.801 52.381 0.00 0.00 43.74 4.41
668 941 2.146342 GTTAGCTTCACTGCTTGCTGA 58.854 47.619 6.50 0.00 43.74 4.26
669 942 2.746362 GTTAGCTTCACTGCTTGCTGAT 59.254 45.455 6.50 0.00 43.74 2.90
670 943 1.906990 AGCTTCACTGCTTGCTGATT 58.093 45.000 6.50 0.00 40.93 2.57
671 944 1.811359 AGCTTCACTGCTTGCTGATTC 59.189 47.619 6.50 0.00 40.93 2.52
672 945 1.135460 GCTTCACTGCTTGCTGATTCC 60.135 52.381 6.50 0.00 0.00 3.01
673 946 2.434428 CTTCACTGCTTGCTGATTCCT 58.566 47.619 6.50 0.00 0.00 3.36
674 947 2.574006 TCACTGCTTGCTGATTCCTT 57.426 45.000 6.50 0.00 0.00 3.36
675 948 2.156917 TCACTGCTTGCTGATTCCTTG 58.843 47.619 6.50 0.00 0.00 3.61
676 949 1.884579 CACTGCTTGCTGATTCCTTGT 59.115 47.619 6.50 0.00 0.00 3.16
677 950 1.884579 ACTGCTTGCTGATTCCTTGTG 59.115 47.619 6.50 0.00 0.00 3.33
678 951 0.599558 TGCTTGCTGATTCCTTGTGC 59.400 50.000 0.00 0.00 0.00 4.57
679 952 0.886563 GCTTGCTGATTCCTTGTGCT 59.113 50.000 0.00 0.00 0.00 4.40
680 953 1.402456 GCTTGCTGATTCCTTGTGCTG 60.402 52.381 0.00 0.00 0.00 4.41
681 954 0.599558 TTGCTGATTCCTTGTGCTGC 59.400 50.000 0.00 0.00 0.00 5.25
682 955 1.136147 GCTGATTCCTTGTGCTGCG 59.864 57.895 0.00 0.00 0.00 5.18
683 956 1.136147 CTGATTCCTTGTGCTGCGC 59.864 57.895 6.19 6.19 0.00 6.09
684 957 1.579964 CTGATTCCTTGTGCTGCGCA 61.580 55.000 12.53 12.53 35.60 6.09
693 966 4.293648 TGCTGCGCACGGTACACT 62.294 61.111 5.66 0.00 31.71 3.55
694 967 2.126228 GCTGCGCACGGTACACTA 60.126 61.111 5.66 0.00 0.00 2.74
695 968 2.442188 GCTGCGCACGGTACACTAC 61.442 63.158 5.66 0.00 0.00 2.73
696 969 1.081041 CTGCGCACGGTACACTACA 60.081 57.895 5.66 0.00 0.00 2.74
697 970 0.665068 CTGCGCACGGTACACTACAA 60.665 55.000 5.66 0.00 0.00 2.41
698 971 0.038067 TGCGCACGGTACACTACAAT 60.038 50.000 5.66 0.00 0.00 2.71
699 972 0.368907 GCGCACGGTACACTACAATG 59.631 55.000 0.30 0.00 0.00 2.82
700 973 0.368907 CGCACGGTACACTACAATGC 59.631 55.000 0.00 0.00 37.57 3.56
701 974 1.434555 GCACGGTACACTACAATGCA 58.565 50.000 0.00 0.00 39.48 3.96
702 975 2.006888 GCACGGTACACTACAATGCAT 58.993 47.619 0.00 0.00 39.48 3.96
703 976 2.223021 GCACGGTACACTACAATGCATG 60.223 50.000 0.00 0.00 39.48 4.06
704 977 3.258228 CACGGTACACTACAATGCATGA 58.742 45.455 0.00 0.00 0.00 3.07
705 978 3.682377 CACGGTACACTACAATGCATGAA 59.318 43.478 0.00 0.00 0.00 2.57
706 979 3.682858 ACGGTACACTACAATGCATGAAC 59.317 43.478 0.00 0.00 0.00 3.18
707 980 3.682377 CGGTACACTACAATGCATGAACA 59.318 43.478 0.00 0.00 0.00 3.18
708 981 4.332543 CGGTACACTACAATGCATGAACAT 59.667 41.667 0.00 0.00 0.00 2.71
709 982 5.572211 GGTACACTACAATGCATGAACATG 58.428 41.667 0.00 10.04 41.60 3.21
710 983 5.353956 GGTACACTACAATGCATGAACATGA 59.646 40.000 17.40 4.63 41.20 3.07
711 984 5.963176 ACACTACAATGCATGAACATGAA 57.037 34.783 17.40 8.37 41.20 2.57
712 985 5.702865 ACACTACAATGCATGAACATGAAC 58.297 37.500 17.40 2.86 41.20 3.18
713 986 5.097529 CACTACAATGCATGAACATGAACC 58.902 41.667 17.40 2.22 41.20 3.62
714 987 3.220507 ACAATGCATGAACATGAACCG 57.779 42.857 17.40 5.57 41.20 4.44
715 988 2.094597 ACAATGCATGAACATGAACCGG 60.095 45.455 17.40 0.00 41.20 5.28
716 989 1.838112 ATGCATGAACATGAACCGGT 58.162 45.000 17.40 0.00 41.20 5.28
717 990 1.614996 TGCATGAACATGAACCGGTT 58.385 45.000 22.50 22.50 41.20 4.44
718 991 2.784347 TGCATGAACATGAACCGGTTA 58.216 42.857 22.33 9.38 41.20 2.85
719 992 3.149981 TGCATGAACATGAACCGGTTAA 58.850 40.909 22.33 14.79 41.20 2.01
720 993 3.057876 TGCATGAACATGAACCGGTTAAC 60.058 43.478 22.33 9.69 41.20 2.01
721 994 3.190535 GCATGAACATGAACCGGTTAACT 59.809 43.478 22.33 4.75 41.20 2.24
722 995 4.320935 GCATGAACATGAACCGGTTAACTT 60.321 41.667 22.33 8.04 41.20 2.66
723 996 5.106475 GCATGAACATGAACCGGTTAACTTA 60.106 40.000 22.33 4.99 41.20 2.24
724 997 6.542852 CATGAACATGAACCGGTTAACTTAG 58.457 40.000 22.33 9.76 41.20 2.18
725 998 4.998672 TGAACATGAACCGGTTAACTTAGG 59.001 41.667 22.33 8.78 0.00 2.69
726 999 3.946606 ACATGAACCGGTTAACTTAGGG 58.053 45.455 22.33 6.73 0.00 3.53
727 1000 2.477845 TGAACCGGTTAACTTAGGGC 57.522 50.000 22.33 4.76 0.00 5.19
728 1001 1.698532 TGAACCGGTTAACTTAGGGCA 59.301 47.619 22.33 7.70 0.00 5.36
729 1002 2.306512 TGAACCGGTTAACTTAGGGCAT 59.693 45.455 22.33 0.00 0.00 4.40
730 1003 2.704464 ACCGGTTAACTTAGGGCATC 57.296 50.000 0.00 0.00 0.00 3.91
731 1004 1.910671 ACCGGTTAACTTAGGGCATCA 59.089 47.619 0.00 0.00 0.00 3.07
732 1005 2.508300 ACCGGTTAACTTAGGGCATCAT 59.492 45.455 0.00 0.00 0.00 2.45
733 1006 3.053917 ACCGGTTAACTTAGGGCATCATT 60.054 43.478 0.00 0.00 0.00 2.57
734 1007 3.951680 CCGGTTAACTTAGGGCATCATTT 59.048 43.478 5.42 0.00 0.00 2.32
735 1008 4.036380 CCGGTTAACTTAGGGCATCATTTC 59.964 45.833 5.42 0.00 0.00 2.17
736 1009 4.881850 CGGTTAACTTAGGGCATCATTTCT 59.118 41.667 5.42 0.00 0.00 2.52
737 1010 5.220854 CGGTTAACTTAGGGCATCATTTCTG 60.221 44.000 5.42 0.00 0.00 3.02
738 1011 5.652452 GGTTAACTTAGGGCATCATTTCTGT 59.348 40.000 5.42 0.00 0.00 3.41
739 1012 6.152831 GGTTAACTTAGGGCATCATTTCTGTT 59.847 38.462 5.42 0.00 0.00 3.16
740 1013 5.904362 AACTTAGGGCATCATTTCTGTTC 57.096 39.130 0.00 0.00 0.00 3.18
741 1014 4.922206 ACTTAGGGCATCATTTCTGTTCA 58.078 39.130 0.00 0.00 0.00 3.18
742 1015 5.324409 ACTTAGGGCATCATTTCTGTTCAA 58.676 37.500 0.00 0.00 0.00 2.69
754 1027 2.929641 TCTGTTCAATTGTGCCACTGA 58.070 42.857 5.13 5.56 0.00 3.41
756 1029 3.890756 TCTGTTCAATTGTGCCACTGATT 59.109 39.130 5.13 0.00 0.00 2.57
757 1030 3.979948 TGTTCAATTGTGCCACTGATTG 58.020 40.909 14.38 14.38 0.00 2.67
758 1031 3.635836 TGTTCAATTGTGCCACTGATTGA 59.364 39.130 17.39 17.39 36.89 2.57
759 1032 4.281435 TGTTCAATTGTGCCACTGATTGAT 59.719 37.500 20.12 0.00 38.06 2.57
760 1033 4.443913 TCAATTGTGCCACTGATTGATG 57.556 40.909 17.39 1.43 34.56 3.07
761 1034 4.080687 TCAATTGTGCCACTGATTGATGA 58.919 39.130 17.39 3.24 34.56 2.92
762 1035 4.523558 TCAATTGTGCCACTGATTGATGAA 59.476 37.500 17.39 2.96 34.56 2.57
763 1036 3.921119 TTGTGCCACTGATTGATGAAC 57.079 42.857 0.00 0.00 0.00 3.18
764 1037 1.805943 TGTGCCACTGATTGATGAACG 59.194 47.619 0.00 0.00 0.00 3.95
767 1040 2.027653 TGCCACTGATTGATGAACGGTA 60.028 45.455 0.00 0.00 0.00 4.02
768 1041 3.006940 GCCACTGATTGATGAACGGTAA 58.993 45.455 0.00 0.00 0.00 2.85
769 1042 3.438781 GCCACTGATTGATGAACGGTAAA 59.561 43.478 0.00 0.00 0.00 2.01
771 1044 5.393027 GCCACTGATTGATGAACGGTAAATT 60.393 40.000 0.00 0.00 0.00 1.82
773 1046 6.094048 CCACTGATTGATGAACGGTAAATTCT 59.906 38.462 0.00 0.00 0.00 2.40
774 1047 7.362056 CCACTGATTGATGAACGGTAAATTCTT 60.362 37.037 0.00 0.00 0.00 2.52
775 1048 8.664798 CACTGATTGATGAACGGTAAATTCTTA 58.335 33.333 0.00 0.00 0.00 2.10
776 1049 9.396022 ACTGATTGATGAACGGTAAATTCTTAT 57.604 29.630 0.00 0.00 0.00 1.73
779 1052 8.856490 ATTGATGAACGGTAAATTCTTATTGC 57.144 30.769 0.00 0.00 0.00 3.56
780 1053 7.384439 TGATGAACGGTAAATTCTTATTGCA 57.616 32.000 0.00 0.00 0.00 4.08
781 1054 7.471721 TGATGAACGGTAAATTCTTATTGCAG 58.528 34.615 0.00 0.00 0.00 4.41
782 1055 7.335673 TGATGAACGGTAAATTCTTATTGCAGA 59.664 33.333 0.00 0.00 0.00 4.26
783 1056 7.441890 TGAACGGTAAATTCTTATTGCAGAA 57.558 32.000 0.00 0.00 37.20 3.02
784 1057 8.050778 TGAACGGTAAATTCTTATTGCAGAAT 57.949 30.769 0.00 0.00 44.05 2.40
802 1075 7.483307 TGCAGAATTATTGAAGAAATGTAGGC 58.517 34.615 0.00 0.00 0.00 3.93
803 1076 7.340232 TGCAGAATTATTGAAGAAATGTAGGCT 59.660 33.333 0.00 0.00 0.00 4.58
804 1077 8.193438 GCAGAATTATTGAAGAAATGTAGGCTT 58.807 33.333 0.00 0.00 0.00 4.35
805 1078 9.727627 CAGAATTATTGAAGAAATGTAGGCTTC 57.272 33.333 0.00 0.00 38.73 3.86
806 1079 9.692325 AGAATTATTGAAGAAATGTAGGCTTCT 57.308 29.630 0.00 0.00 38.96 2.85
814 1087 7.176515 TGAAGAAATGTAGGCTTCTTTTATGCA 59.823 33.333 0.00 0.00 40.98 3.96
815 1088 7.466746 AGAAATGTAGGCTTCTTTTATGCAA 57.533 32.000 0.00 0.00 0.00 4.08
816 1089 7.895759 AGAAATGTAGGCTTCTTTTATGCAAA 58.104 30.769 0.00 0.00 0.00 3.68
818 1091 5.059404 TGTAGGCTTCTTTTATGCAAAGC 57.941 39.130 9.56 9.56 41.72 3.51
819 1092 4.766891 TGTAGGCTTCTTTTATGCAAAGCT 59.233 37.500 15.94 6.99 42.85 3.74
820 1093 4.184079 AGGCTTCTTTTATGCAAAGCTG 57.816 40.909 15.94 2.60 42.85 4.24
821 1094 3.828451 AGGCTTCTTTTATGCAAAGCTGA 59.172 39.130 15.94 0.00 42.85 4.26
823 1096 4.082571 GGCTTCTTTTATGCAAAGCTGAGA 60.083 41.667 15.94 2.01 42.85 3.27
825 1098 5.335504 GCTTCTTTTATGCAAAGCTGAGACT 60.336 40.000 10.57 0.00 41.72 3.24
826 1099 6.639632 TTCTTTTATGCAAAGCTGAGACTT 57.360 33.333 0.00 0.00 41.72 3.01
827 1100 6.005583 TCTTTTATGCAAAGCTGAGACTTG 57.994 37.500 0.00 0.00 41.72 3.16
828 1101 5.764686 TCTTTTATGCAAAGCTGAGACTTGA 59.235 36.000 0.00 0.00 41.72 3.02
829 1102 6.262944 TCTTTTATGCAAAGCTGAGACTTGAA 59.737 34.615 0.00 0.00 41.72 2.69
830 1103 6.579666 TTTATGCAAAGCTGAGACTTGAAT 57.420 33.333 0.00 0.00 0.00 2.57
832 1105 3.479489 TGCAAAGCTGAGACTTGAATGA 58.521 40.909 0.00 0.00 0.00 2.57
833 1106 3.501062 TGCAAAGCTGAGACTTGAATGAG 59.499 43.478 0.00 0.00 0.00 2.90
834 1107 3.750130 GCAAAGCTGAGACTTGAATGAGA 59.250 43.478 0.00 0.00 0.00 3.27
835 1108 4.214971 GCAAAGCTGAGACTTGAATGAGAA 59.785 41.667 0.00 0.00 0.00 2.87
836 1109 5.106237 GCAAAGCTGAGACTTGAATGAGAAT 60.106 40.000 0.00 0.00 0.00 2.40
839 1112 6.052405 AGCTGAGACTTGAATGAGAATTCT 57.948 37.500 7.95 7.95 0.00 2.40
840 1113 7.180322 AGCTGAGACTTGAATGAGAATTCTA 57.820 36.000 8.25 0.00 0.00 2.10
842 1115 7.041107 GCTGAGACTTGAATGAGAATTCTAGT 58.959 38.462 8.25 6.99 44.80 2.57
843 1116 7.010367 GCTGAGACTTGAATGAGAATTCTAGTG 59.990 40.741 16.53 6.88 43.16 2.74
844 1117 7.901029 TGAGACTTGAATGAGAATTCTAGTGT 58.099 34.615 16.53 13.61 43.16 3.55
845 1118 7.816513 TGAGACTTGAATGAGAATTCTAGTGTG 59.183 37.037 16.53 0.00 43.16 3.82
846 1119 7.675062 AGACTTGAATGAGAATTCTAGTGTGT 58.325 34.615 16.53 2.17 43.16 3.72
847 1120 8.153550 AGACTTGAATGAGAATTCTAGTGTGTT 58.846 33.333 16.53 0.00 43.16 3.32
849 1122 8.562892 ACTTGAATGAGAATTCTAGTGTGTTTG 58.437 33.333 8.25 0.00 42.16 2.93
850 1123 8.450578 TTGAATGAGAATTCTAGTGTGTTTGT 57.549 30.769 8.25 0.00 0.00 2.83
851 1124 9.554395 TTGAATGAGAATTCTAGTGTGTTTGTA 57.446 29.630 8.25 0.00 0.00 2.41
852 1125 9.554395 TGAATGAGAATTCTAGTGTGTTTGTAA 57.446 29.630 8.25 0.00 0.00 2.41
855 1128 8.589335 TGAGAATTCTAGTGTGTTTGTAAGAC 57.411 34.615 8.25 0.00 0.00 3.01
856 1129 7.656137 TGAGAATTCTAGTGTGTTTGTAAGACC 59.344 37.037 8.25 0.00 0.00 3.85
859 1132 7.672983 ATTCTAGTGTGTTTGTAAGACCATG 57.327 36.000 0.00 0.00 0.00 3.66
863 1136 8.205512 TCTAGTGTGTTTGTAAGACCATGTTAA 58.794 33.333 0.00 0.00 0.00 2.01
866 1139 7.719633 AGTGTGTTTGTAAGACCATGTTAATCT 59.280 33.333 0.00 0.00 0.00 2.40
867 1140 8.995220 GTGTGTTTGTAAGACCATGTTAATCTA 58.005 33.333 0.00 0.00 0.00 1.98
868 1141 9.733556 TGTGTTTGTAAGACCATGTTAATCTAT 57.266 29.630 0.00 0.00 0.00 1.98
879 1152 9.561069 GACCATGTTAATCTATTTCTATGTGGT 57.439 33.333 0.00 0.00 36.51 4.16
920 1492 9.979578 ACAATGTTTACATGTCATATTTGTTGT 57.020 25.926 0.00 2.56 36.56 3.32
922 1494 8.894409 ATGTTTACATGTCATATTTGTTGTCG 57.106 30.769 0.00 0.00 34.83 4.35
923 1495 8.089115 TGTTTACATGTCATATTTGTTGTCGA 57.911 30.769 0.00 0.00 0.00 4.20
924 1496 8.726068 TGTTTACATGTCATATTTGTTGTCGAT 58.274 29.630 0.00 0.00 0.00 3.59
925 1497 9.554724 GTTTACATGTCATATTTGTTGTCGATT 57.445 29.630 0.00 0.00 0.00 3.34
958 1530 7.404671 GTGGATCACCCTGTTGTAAATTAAT 57.595 36.000 0.00 0.00 35.38 1.40
959 1531 7.836842 GTGGATCACCCTGTTGTAAATTAATT 58.163 34.615 0.00 0.00 35.38 1.40
960 1532 7.759433 GTGGATCACCCTGTTGTAAATTAATTG 59.241 37.037 0.39 0.00 35.38 2.32
961 1533 6.756542 GGATCACCCTGTTGTAAATTAATTGC 59.243 38.462 0.39 0.00 0.00 3.56
963 1535 8.588290 ATCACCCTGTTGTAAATTAATTGCTA 57.412 30.769 0.39 0.00 0.00 3.49
964 1536 8.050778 TCACCCTGTTGTAAATTAATTGCTAG 57.949 34.615 0.39 0.00 0.00 3.42
965 1537 6.751888 CACCCTGTTGTAAATTAATTGCTAGC 59.248 38.462 8.10 8.10 0.00 3.42
966 1538 6.663523 ACCCTGTTGTAAATTAATTGCTAGCT 59.336 34.615 17.23 0.00 0.00 3.32
968 1540 7.196331 CCTGTTGTAAATTAATTGCTAGCTCC 58.804 38.462 17.23 0.00 0.00 4.70
969 1541 6.781138 TGTTGTAAATTAATTGCTAGCTCCG 58.219 36.000 17.23 0.00 0.00 4.63
970 1542 5.418310 TGTAAATTAATTGCTAGCTCCGC 57.582 39.130 17.23 0.00 0.00 5.54
971 1543 3.990318 AAATTAATTGCTAGCTCCGCC 57.010 42.857 17.23 0.00 0.00 6.13
972 1544 2.638480 ATTAATTGCTAGCTCCGCCA 57.362 45.000 17.23 0.00 0.00 5.69
973 1545 1.663695 TTAATTGCTAGCTCCGCCAC 58.336 50.000 17.23 0.00 0.00 5.01
974 1546 0.830648 TAATTGCTAGCTCCGCCACT 59.169 50.000 17.23 0.00 0.00 4.00
975 1547 0.745845 AATTGCTAGCTCCGCCACTG 60.746 55.000 17.23 0.00 0.00 3.66
976 1548 3.958147 TTGCTAGCTCCGCCACTGC 62.958 63.158 17.23 0.00 0.00 4.40
977 1549 4.154347 GCTAGCTCCGCCACTGCT 62.154 66.667 7.70 0.00 40.43 4.24
978 1550 2.105930 CTAGCTCCGCCACTGCTC 59.894 66.667 0.00 0.00 38.15 4.26
979 1551 3.764810 CTAGCTCCGCCACTGCTCG 62.765 68.421 0.00 0.00 38.15 5.03
993 1565 2.875485 CTCGTCGCCGGAGAAGAA 59.125 61.111 22.42 8.71 33.95 2.52
1377 1955 1.298014 CTGGAAGCAGGTGGAGTCC 59.702 63.158 0.73 0.73 0.00 3.85
1388 1966 2.364448 GGAGTCCGGGGAGAAGCT 60.364 66.667 0.00 0.00 0.00 3.74
1478 2056 2.272146 GGGAGCCGGAAATGAGCA 59.728 61.111 5.05 0.00 0.00 4.26
1713 2291 0.992431 AGGCTGGAGATGGCAGGAAT 60.992 55.000 0.00 0.00 0.00 3.01
1817 2395 1.337260 GGATTCATCGGACGAGGATGG 60.337 57.143 9.93 0.00 41.24 3.51
2132 2710 9.059260 GTTTACCAATAAAAGGTTACACTCTCA 57.941 33.333 0.00 0.00 40.54 3.27
2135 2713 6.001460 CCAATAAAAGGTTACACTCTCACCA 58.999 40.000 0.00 0.00 32.43 4.17
2169 2747 5.988092 TGTTGTTTATTTTCCTCGTAACCG 58.012 37.500 0.00 0.00 0.00 4.44
2205 2783 1.266989 GTGTGGCCTGCTAACTTTGTC 59.733 52.381 3.32 0.00 0.00 3.18
2258 2836 8.841300 AGGAAAAATCAACTAAGAAGACTTGAC 58.159 33.333 0.00 0.00 37.53 3.18
2275 2853 2.429478 TGACATGTGTGGCTCTTGATG 58.571 47.619 1.15 0.00 33.19 3.07
2357 2935 2.573340 CAAGAATTGGCCACCCGC 59.427 61.111 3.88 0.00 43.94 6.13
2500 3078 7.670979 TGCAATAGTGATTATGCCCATCTTATT 59.329 33.333 0.00 0.00 0.00 1.40
2662 3240 2.023673 CAACTGTTGTCCAGGAAGCAA 58.976 47.619 12.30 0.00 46.06 3.91
2862 3440 6.753180 TGAACTATCTGAAGATGCTATCACC 58.247 40.000 2.99 0.00 36.05 4.02
2997 3575 8.081633 TGGTAATGTTCATTTGCAAGAAGTTAG 58.918 33.333 0.00 0.00 0.00 2.34
3001 3579 9.463443 AATGTTCATTTGCAAGAAGTTAGTTAC 57.537 29.630 0.00 0.00 0.00 2.50
3002 3580 8.220755 TGTTCATTTGCAAGAAGTTAGTTACT 57.779 30.769 0.00 0.00 39.32 2.24
3004 3582 9.516314 GTTCATTTGCAAGAAGTTAGTTACTTT 57.484 29.630 0.00 0.00 47.00 2.66
3005 3583 9.515020 TTCATTTGCAAGAAGTTAGTTACTTTG 57.485 29.630 0.00 0.00 47.00 2.77
3007 3585 6.385649 TTGCAAGAAGTTAGTTACTTTGGG 57.614 37.500 0.00 0.00 47.00 4.12
3008 3586 5.686753 TGCAAGAAGTTAGTTACTTTGGGA 58.313 37.500 0.00 0.00 47.00 4.37
3009 3587 6.303839 TGCAAGAAGTTAGTTACTTTGGGAT 58.696 36.000 0.00 0.00 47.00 3.85
3031 3609 2.882324 TGTTCCTTTCGGTTTTGTTGC 58.118 42.857 0.00 0.00 0.00 4.17
3056 3634 7.148423 GCCCTTCAACCAATTTATTAAAAGCAG 60.148 37.037 0.00 0.00 0.00 4.24
3353 3931 4.465305 GTCTAAACTCCTAACTGCTGGGTA 59.535 45.833 0.00 0.00 0.00 3.69
3360 3938 4.880164 TCCTAACTGCTGGGTAGACTTAT 58.120 43.478 4.34 0.00 37.41 1.73
3361 3939 6.022107 TCCTAACTGCTGGGTAGACTTATA 57.978 41.667 4.34 0.00 37.41 0.98
3362 3940 6.621394 TCCTAACTGCTGGGTAGACTTATAT 58.379 40.000 4.34 0.00 37.41 0.86
3365 3943 8.470805 CCTAACTGCTGGGTAGACTTATATATG 58.529 40.741 0.00 0.00 37.41 1.78
3366 3944 6.859112 ACTGCTGGGTAGACTTATATATGG 57.141 41.667 0.00 0.00 0.00 2.74
3367 3945 6.323737 ACTGCTGGGTAGACTTATATATGGT 58.676 40.000 0.00 0.00 0.00 3.55
3369 3947 5.483937 TGCTGGGTAGACTTATATATGGTGG 59.516 44.000 0.00 0.00 0.00 4.61
3370 3948 5.104900 GCTGGGTAGACTTATATATGGTGGG 60.105 48.000 0.00 0.00 0.00 4.61
3371 3949 6.235765 TGGGTAGACTTATATATGGTGGGA 57.764 41.667 0.00 0.00 0.00 4.37
4044 4631 6.925610 TGGTGTTCTATTGCATCATTCTAC 57.074 37.500 0.00 0.00 0.00 2.59
4077 4664 3.621558 ACCCCATTTAGCTGTTTAGAGC 58.378 45.455 0.00 0.00 39.46 4.09
4326 4923 8.450578 TGTAATAGCCTTTCTGTTATGGATTG 57.549 34.615 0.00 0.00 32.24 2.67
4331 4928 6.458210 AGCCTTTCTGTTATGGATTGTTTTG 58.542 36.000 0.00 0.00 0.00 2.44
4397 4994 6.653989 AGCTTAGGTACAACAGCAATATCTT 58.346 36.000 10.88 0.00 34.49 2.40
4433 5030 5.048782 TGAACTGCACTTTCATATGGTTCAC 60.049 40.000 12.82 0.00 37.47 3.18
4770 5367 4.124851 ACGTGGAGTGAATTATCCAGAC 57.875 45.455 6.74 0.00 46.09 3.51
4804 5401 8.341892 AGTGATTCAGGTAGAATTTCTTTTCC 57.658 34.615 3.86 5.71 46.76 3.13
4900 5497 4.712476 AGTGGCAGCTATCTCTTTAATGG 58.288 43.478 0.00 0.00 0.00 3.16
4949 5546 0.097674 GCTGCTCTAACCGCACATTG 59.902 55.000 0.00 0.00 33.19 2.82
5175 5772 4.691685 TCGGCGTACTTGTTCATATTTTGT 59.308 37.500 6.85 0.00 0.00 2.83
5400 5997 4.002797 GCATGGAAAAGCCTCCGT 57.997 55.556 0.00 0.00 38.44 4.69
5403 6000 0.673644 CATGGAAAAGCCTCCGTCGT 60.674 55.000 0.00 0.00 38.44 4.34
5560 6157 4.452114 TGAAACTGATCGATGTCTTGTTGG 59.548 41.667 0.54 0.00 0.00 3.77
5573 6170 1.034838 TTGTTGGCTGGCTCAAACGT 61.035 50.000 2.00 0.00 0.00 3.99
5581 6178 2.607187 CTGGCTCAAACGTAGAACGAT 58.393 47.619 6.44 0.00 46.05 3.73
5664 6262 8.299570 CAGATGTATTTACCCTTGGCATTATTC 58.700 37.037 0.00 0.00 0.00 1.75
5694 6292 0.543749 CAGCCTCTTACTCTTGGGGG 59.456 60.000 0.00 0.00 0.00 5.40
5886 6484 6.773976 AGGTCAGTTTGTTTTCAGATGAAA 57.226 33.333 3.91 3.91 41.77 2.69
5952 6550 1.691196 TTCCTGAAGCAGTTGGGTTG 58.309 50.000 0.00 0.00 37.33 3.77
6091 6718 3.914771 CCTGGGGATTGTAATCAATGGT 58.085 45.455 6.90 0.00 43.33 3.55
6098 6725 7.057894 GGGGATTGTAATCAATGGTGTAAGTA 58.942 38.462 6.90 0.00 43.33 2.24
6115 6742 7.255871 GGTGTAAGTAGAAAGAGGACTGAAGAA 60.256 40.741 0.00 0.00 0.00 2.52
6140 6767 1.772836 ATTCCTCTCAAAGCCCATGC 58.227 50.000 0.00 0.00 37.95 4.06
6141 6768 0.677731 TTCCTCTCAAAGCCCATGCG 60.678 55.000 0.00 0.00 44.33 4.73
6147 6774 2.117206 AAAGCCCATGCGGAACCA 59.883 55.556 4.56 0.00 44.33 3.67
6159 6786 2.224549 TGCGGAACCAGTTGTTATTTCG 59.775 45.455 0.00 0.00 37.29 3.46
6201 6828 3.254093 TCTCACCAGTTAACCTCCTGA 57.746 47.619 0.88 0.00 0.00 3.86
6203 6830 4.168101 TCTCACCAGTTAACCTCCTGATT 58.832 43.478 0.88 0.00 0.00 2.57
6375 7030 1.925623 TGGGGATCCTCCATTGGATT 58.074 50.000 9.81 0.00 46.00 3.01
6389 7044 4.639310 CCATTGGATTCAGAAGAAGGTGAG 59.361 45.833 0.00 0.00 37.14 3.51
6410 7065 2.332654 CGCCCAAGGTCCGAAAAGG 61.333 63.158 0.00 0.00 42.97 3.11
6431 7086 3.454812 GGAGTTCTTCATAGGCTGGGTAA 59.545 47.826 0.00 0.00 0.00 2.85
6433 7088 3.844211 AGTTCTTCATAGGCTGGGTAACA 59.156 43.478 0.00 0.00 39.74 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 172 4.760047 TTCGCTTCCCTCGCTGGC 62.760 66.667 0.00 0.00 0.00 4.85
174 182 1.375268 AGCTGCTGACTTCGCTTCC 60.375 57.895 0.00 0.00 0.00 3.46
184 192 3.767806 CTCCTCGCCAGCTGCTGA 61.768 66.667 30.10 10.22 38.05 4.26
266 274 4.803426 CAGGTCGCGGAGTCCAGC 62.803 72.222 10.49 12.49 0.00 4.85
267 275 1.949847 ATTCAGGTCGCGGAGTCCAG 61.950 60.000 10.49 2.37 0.00 3.86
268 276 1.982395 ATTCAGGTCGCGGAGTCCA 60.982 57.895 10.49 0.00 0.00 4.02
269 277 1.519455 CATTCAGGTCGCGGAGTCC 60.519 63.158 6.13 0.00 0.00 3.85
270 278 2.167861 GCATTCAGGTCGCGGAGTC 61.168 63.158 6.13 0.00 0.00 3.36
271 279 2.125512 GCATTCAGGTCGCGGAGT 60.126 61.111 6.13 0.00 0.00 3.85
272 280 3.257561 CGCATTCAGGTCGCGGAG 61.258 66.667 6.13 0.00 45.08 4.63
276 284 2.892425 CCTCCGCATTCAGGTCGC 60.892 66.667 0.00 0.00 0.00 5.19
277 285 2.892425 GCCTCCGCATTCAGGTCG 60.892 66.667 0.00 0.00 34.03 4.79
278 286 2.892425 CGCCTCCGCATTCAGGTC 60.892 66.667 0.00 0.00 34.03 3.85
279 287 3.665675 GACGCCTCCGCATTCAGGT 62.666 63.158 0.00 0.00 38.22 4.00
280 288 2.892425 GACGCCTCCGCATTCAGG 60.892 66.667 0.00 0.00 38.22 3.86
281 289 1.493950 GATGACGCCTCCGCATTCAG 61.494 60.000 0.00 0.00 38.22 3.02
282 290 1.521457 GATGACGCCTCCGCATTCA 60.521 57.895 0.00 0.00 38.22 2.57
283 291 1.089481 TTGATGACGCCTCCGCATTC 61.089 55.000 0.00 0.00 38.22 2.67
284 292 1.078497 TTGATGACGCCTCCGCATT 60.078 52.632 0.00 0.00 38.22 3.56
285 293 1.815421 GTTGATGACGCCTCCGCAT 60.815 57.895 0.00 0.00 38.22 4.73
286 294 2.434185 GTTGATGACGCCTCCGCA 60.434 61.111 0.00 0.00 38.22 5.69
287 295 1.741770 AAGTTGATGACGCCTCCGC 60.742 57.895 0.00 0.00 38.22 5.54
288 296 0.670546 ACAAGTTGATGACGCCTCCG 60.671 55.000 10.54 0.00 41.14 4.63
289 297 1.464997 GAACAAGTTGATGACGCCTCC 59.535 52.381 10.54 0.00 0.00 4.30
290 298 1.126846 CGAACAAGTTGATGACGCCTC 59.873 52.381 10.54 0.00 0.00 4.70
291 299 1.148310 CGAACAAGTTGATGACGCCT 58.852 50.000 10.54 0.00 0.00 5.52
292 300 1.144969 TCGAACAAGTTGATGACGCC 58.855 50.000 10.54 0.00 0.00 5.68
293 301 2.411547 CCTTCGAACAAGTTGATGACGC 60.412 50.000 10.54 0.00 0.00 5.19
294 302 2.411547 GCCTTCGAACAAGTTGATGACG 60.412 50.000 10.54 9.21 0.00 4.35
295 303 2.411547 CGCCTTCGAACAAGTTGATGAC 60.412 50.000 10.54 0.00 38.10 3.06
296 304 1.798223 CGCCTTCGAACAAGTTGATGA 59.202 47.619 10.54 1.14 38.10 2.92
297 305 1.135972 CCGCCTTCGAACAAGTTGATG 60.136 52.381 10.54 0.00 38.10 3.07
298 306 1.156736 CCGCCTTCGAACAAGTTGAT 58.843 50.000 10.54 0.00 38.10 2.57
299 307 0.105224 TCCGCCTTCGAACAAGTTGA 59.895 50.000 10.54 0.00 38.10 3.18
300 308 0.941542 TTCCGCCTTCGAACAAGTTG 59.058 50.000 0.00 0.00 38.10 3.16
301 309 1.332686 GTTTCCGCCTTCGAACAAGTT 59.667 47.619 0.00 0.00 38.10 2.66
302 310 0.942252 GTTTCCGCCTTCGAACAAGT 59.058 50.000 0.00 0.00 38.10 3.16
303 311 0.237498 GGTTTCCGCCTTCGAACAAG 59.763 55.000 0.00 0.00 38.10 3.16
304 312 0.179040 AGGTTTCCGCCTTCGAACAA 60.179 50.000 0.00 0.00 34.71 2.83
305 313 0.179040 AAGGTTTCCGCCTTCGAACA 60.179 50.000 0.00 0.00 45.03 3.18
306 314 2.625375 AAGGTTTCCGCCTTCGAAC 58.375 52.632 0.00 0.00 45.03 3.95
312 320 0.606673 GAGCAGAAAGGTTTCCGCCT 60.607 55.000 6.98 0.00 40.54 5.52
313 321 0.889186 TGAGCAGAAAGGTTTCCGCC 60.889 55.000 6.98 1.21 40.54 6.13
314 322 1.131315 GATGAGCAGAAAGGTTTCCGC 59.869 52.381 2.94 2.94 40.09 5.54
315 323 2.704572 AGATGAGCAGAAAGGTTTCCG 58.295 47.619 0.00 0.00 37.92 4.30
316 324 4.393371 GTGTAGATGAGCAGAAAGGTTTCC 59.607 45.833 0.00 0.00 37.92 3.13
317 325 4.393371 GGTGTAGATGAGCAGAAAGGTTTC 59.607 45.833 0.00 0.00 37.45 2.78
318 326 4.202461 TGGTGTAGATGAGCAGAAAGGTTT 60.202 41.667 0.00 0.00 0.00 3.27
319 327 3.327757 TGGTGTAGATGAGCAGAAAGGTT 59.672 43.478 0.00 0.00 0.00 3.50
320 328 2.906389 TGGTGTAGATGAGCAGAAAGGT 59.094 45.455 0.00 0.00 0.00 3.50
321 329 3.616956 TGGTGTAGATGAGCAGAAAGG 57.383 47.619 0.00 0.00 0.00 3.11
322 330 4.763073 TGATGGTGTAGATGAGCAGAAAG 58.237 43.478 0.00 0.00 0.00 2.62
323 331 4.223700 ACTGATGGTGTAGATGAGCAGAAA 59.776 41.667 0.00 0.00 0.00 2.52
324 332 3.771479 ACTGATGGTGTAGATGAGCAGAA 59.229 43.478 0.00 0.00 0.00 3.02
325 333 3.369175 ACTGATGGTGTAGATGAGCAGA 58.631 45.455 0.00 0.00 0.00 4.26
326 334 3.815856 ACTGATGGTGTAGATGAGCAG 57.184 47.619 0.00 0.00 0.00 4.24
327 335 5.675684 TTTACTGATGGTGTAGATGAGCA 57.324 39.130 0.00 0.00 0.00 4.26
328 336 6.183360 GGTTTTTACTGATGGTGTAGATGAGC 60.183 42.308 0.00 0.00 0.00 4.26
329 337 7.106239 AGGTTTTTACTGATGGTGTAGATGAG 58.894 38.462 0.00 0.00 0.00 2.90
330 338 7.016153 AGGTTTTTACTGATGGTGTAGATGA 57.984 36.000 0.00 0.00 0.00 2.92
331 339 7.687941 AAGGTTTTTACTGATGGTGTAGATG 57.312 36.000 0.00 0.00 0.00 2.90
332 340 7.176690 CCAAAGGTTTTTACTGATGGTGTAGAT 59.823 37.037 0.00 0.00 0.00 1.98
333 341 6.488683 CCAAAGGTTTTTACTGATGGTGTAGA 59.511 38.462 0.00 0.00 0.00 2.59
334 342 6.677913 CCAAAGGTTTTTACTGATGGTGTAG 58.322 40.000 0.00 0.00 0.00 2.74
335 343 5.010213 GCCAAAGGTTTTTACTGATGGTGTA 59.990 40.000 0.00 0.00 31.74 2.90
336 344 4.202212 GCCAAAGGTTTTTACTGATGGTGT 60.202 41.667 0.00 0.00 31.74 4.16
337 345 4.306600 GCCAAAGGTTTTTACTGATGGTG 58.693 43.478 0.00 0.00 31.74 4.17
338 346 3.323691 GGCCAAAGGTTTTTACTGATGGT 59.676 43.478 0.00 0.00 31.74 3.55
339 347 3.613910 CGGCCAAAGGTTTTTACTGATGG 60.614 47.826 2.24 0.00 0.00 3.51
340 348 3.005367 ACGGCCAAAGGTTTTTACTGATG 59.995 43.478 2.24 0.00 0.00 3.07
341 349 3.227614 ACGGCCAAAGGTTTTTACTGAT 58.772 40.909 2.24 0.00 0.00 2.90
342 350 2.619646 GACGGCCAAAGGTTTTTACTGA 59.380 45.455 2.24 0.00 0.00 3.41
343 351 2.359531 TGACGGCCAAAGGTTTTTACTG 59.640 45.455 2.24 0.00 0.00 2.74
344 352 2.657143 TGACGGCCAAAGGTTTTTACT 58.343 42.857 2.24 0.00 0.00 2.24
345 353 3.117794 GTTGACGGCCAAAGGTTTTTAC 58.882 45.455 2.24 0.00 36.36 2.01
346 354 3.025262 AGTTGACGGCCAAAGGTTTTTA 58.975 40.909 2.24 0.00 36.36 1.52
347 355 1.828595 AGTTGACGGCCAAAGGTTTTT 59.171 42.857 2.24 0.00 36.36 1.94
348 356 1.407618 GAGTTGACGGCCAAAGGTTTT 59.592 47.619 2.24 0.00 36.36 2.43
349 357 1.029681 GAGTTGACGGCCAAAGGTTT 58.970 50.000 2.24 0.00 36.36 3.27
350 358 0.182775 AGAGTTGACGGCCAAAGGTT 59.817 50.000 2.24 0.00 36.36 3.50
351 359 0.182775 AAGAGTTGACGGCCAAAGGT 59.817 50.000 2.24 0.00 36.36 3.50
352 360 2.178912 TAAGAGTTGACGGCCAAAGG 57.821 50.000 2.24 0.00 36.36 3.11
353 361 2.225727 GGTTAAGAGTTGACGGCCAAAG 59.774 50.000 2.24 0.00 36.36 2.77
354 362 2.223745 GGTTAAGAGTTGACGGCCAAA 58.776 47.619 2.24 0.00 36.36 3.28
355 363 1.543871 GGGTTAAGAGTTGACGGCCAA 60.544 52.381 2.24 0.00 0.00 4.52
356 364 0.035739 GGGTTAAGAGTTGACGGCCA 59.964 55.000 2.24 0.00 0.00 5.36
357 365 0.323957 AGGGTTAAGAGTTGACGGCC 59.676 55.000 0.00 0.00 0.00 6.13
358 366 2.028748 TGTAGGGTTAAGAGTTGACGGC 60.029 50.000 0.00 0.00 0.00 5.68
359 367 3.006110 TGTGTAGGGTTAAGAGTTGACGG 59.994 47.826 0.00 0.00 0.00 4.79
360 368 3.985925 GTGTGTAGGGTTAAGAGTTGACG 59.014 47.826 0.00 0.00 0.00 4.35
361 369 4.313282 GGTGTGTAGGGTTAAGAGTTGAC 58.687 47.826 0.00 0.00 0.00 3.18
362 370 3.325716 GGGTGTGTAGGGTTAAGAGTTGA 59.674 47.826 0.00 0.00 0.00 3.18
363 371 3.326880 AGGGTGTGTAGGGTTAAGAGTTG 59.673 47.826 0.00 0.00 0.00 3.16
364 372 3.326880 CAGGGTGTGTAGGGTTAAGAGTT 59.673 47.826 0.00 0.00 0.00 3.01
365 373 2.904434 CAGGGTGTGTAGGGTTAAGAGT 59.096 50.000 0.00 0.00 0.00 3.24
366 374 2.354805 GCAGGGTGTGTAGGGTTAAGAG 60.355 54.545 0.00 0.00 0.00 2.85
367 375 1.626825 GCAGGGTGTGTAGGGTTAAGA 59.373 52.381 0.00 0.00 0.00 2.10
368 376 1.339727 GGCAGGGTGTGTAGGGTTAAG 60.340 57.143 0.00 0.00 0.00 1.85
369 377 0.694196 GGCAGGGTGTGTAGGGTTAA 59.306 55.000 0.00 0.00 0.00 2.01
370 378 1.202769 GGGCAGGGTGTGTAGGGTTA 61.203 60.000 0.00 0.00 0.00 2.85
371 379 2.535331 GGGCAGGGTGTGTAGGGTT 61.535 63.158 0.00 0.00 0.00 4.11
372 380 2.933834 GGGCAGGGTGTGTAGGGT 60.934 66.667 0.00 0.00 0.00 4.34
373 381 4.096003 CGGGCAGGGTGTGTAGGG 62.096 72.222 0.00 0.00 0.00 3.53
374 382 3.000819 TCGGGCAGGGTGTGTAGG 61.001 66.667 0.00 0.00 0.00 3.18
375 383 2.264794 GTCGGGCAGGGTGTGTAG 59.735 66.667 0.00 0.00 0.00 2.74
376 384 3.687102 CGTCGGGCAGGGTGTGTA 61.687 66.667 0.00 0.00 0.00 2.90
456 729 3.174265 CTCCTGGGAGGATGGGCC 61.174 72.222 8.68 0.00 44.81 5.80
476 749 4.704103 AGAGGCAGGTGCGGAGGA 62.704 66.667 0.00 0.00 43.26 3.71
477 750 4.154347 GAGAGGCAGGTGCGGAGG 62.154 72.222 0.00 0.00 43.26 4.30
481 754 4.803426 GACGGAGAGGCAGGTGCG 62.803 72.222 0.00 0.00 43.26 5.34
482 755 4.803426 CGACGGAGAGGCAGGTGC 62.803 72.222 0.00 0.00 41.14 5.01
564 837 4.704833 CAGACTGGGCGGTGGGTG 62.705 72.222 0.00 0.00 0.00 4.61
568 841 4.320456 AGTGCAGACTGGGCGGTG 62.320 66.667 4.26 0.00 0.00 4.94
569 842 4.008933 GAGTGCAGACTGGGCGGT 62.009 66.667 4.26 0.00 30.16 5.68
570 843 4.767255 GGAGTGCAGACTGGGCGG 62.767 72.222 4.26 0.00 30.16 6.13
572 845 4.767255 CCGGAGTGCAGACTGGGC 62.767 72.222 0.00 0.00 30.16 5.36
573 846 4.767255 GCCGGAGTGCAGACTGGG 62.767 72.222 5.05 3.75 33.56 4.45
574 847 4.007644 TGCCGGAGTGCAGACTGG 62.008 66.667 5.05 12.13 36.04 4.00
575 848 2.740055 GTGCCGGAGTGCAGACTG 60.740 66.667 5.05 0.00 43.02 3.51
576 849 2.919856 AGTGCCGGAGTGCAGACT 60.920 61.111 5.05 0.00 43.02 3.24
577 850 2.433318 GAGTGCCGGAGTGCAGAC 60.433 66.667 5.05 0.00 43.02 3.51
578 851 4.056125 CGAGTGCCGGAGTGCAGA 62.056 66.667 5.05 0.00 43.02 4.26
598 871 1.007118 TGGTACCTCAGATCAGGCTGA 59.993 52.381 21.19 21.19 42.31 4.26
599 872 1.489481 TGGTACCTCAGATCAGGCTG 58.511 55.000 14.36 8.58 36.98 4.85
600 873 2.485966 ATGGTACCTCAGATCAGGCT 57.514 50.000 14.36 0.00 36.98 4.58
601 874 3.567478 AAATGGTACCTCAGATCAGGC 57.433 47.619 14.36 0.00 36.98 4.85
602 875 5.500234 TGAAAAATGGTACCTCAGATCAGG 58.500 41.667 14.36 0.00 39.80 3.86
603 876 7.201767 GGATTGAAAAATGGTACCTCAGATCAG 60.202 40.741 14.36 0.00 0.00 2.90
604 877 6.603201 GGATTGAAAAATGGTACCTCAGATCA 59.397 38.462 14.36 9.52 0.00 2.92
605 878 6.039829 GGGATTGAAAAATGGTACCTCAGATC 59.960 42.308 14.36 12.11 0.00 2.75
606 879 5.893824 GGGATTGAAAAATGGTACCTCAGAT 59.106 40.000 14.36 4.82 0.00 2.90
607 880 5.261216 GGGATTGAAAAATGGTACCTCAGA 58.739 41.667 14.36 0.00 0.00 3.27
608 881 4.402474 GGGGATTGAAAAATGGTACCTCAG 59.598 45.833 14.36 0.00 0.00 3.35
609 882 4.349365 GGGGATTGAAAAATGGTACCTCA 58.651 43.478 14.36 4.99 0.00 3.86
610 883 3.704566 GGGGGATTGAAAAATGGTACCTC 59.295 47.826 14.36 2.01 0.00 3.85
611 884 3.078305 TGGGGGATTGAAAAATGGTACCT 59.922 43.478 14.36 0.00 0.00 3.08
612 885 3.445987 TGGGGGATTGAAAAATGGTACC 58.554 45.455 4.43 4.43 0.00 3.34
613 886 5.692115 ATTGGGGGATTGAAAAATGGTAC 57.308 39.130 0.00 0.00 0.00 3.34
614 887 6.710499 AAATTGGGGGATTGAAAAATGGTA 57.290 33.333 0.00 0.00 0.00 3.25
615 888 5.597430 AAATTGGGGGATTGAAAAATGGT 57.403 34.783 0.00 0.00 0.00 3.55
616 889 5.123661 CGAAAATTGGGGGATTGAAAAATGG 59.876 40.000 0.00 0.00 0.00 3.16
617 890 5.936956 TCGAAAATTGGGGGATTGAAAAATG 59.063 36.000 0.00 0.00 0.00 2.32
618 891 6.120507 TCGAAAATTGGGGGATTGAAAAAT 57.879 33.333 0.00 0.00 0.00 1.82
619 892 5.552870 TCGAAAATTGGGGGATTGAAAAA 57.447 34.783 0.00 0.00 0.00 1.94
620 893 5.753721 ATCGAAAATTGGGGGATTGAAAA 57.246 34.783 0.00 0.00 0.00 2.29
621 894 5.753721 AATCGAAAATTGGGGGATTGAAA 57.246 34.783 0.00 0.00 0.00 2.69
622 895 5.753721 AAATCGAAAATTGGGGGATTGAA 57.246 34.783 0.00 0.00 0.00 2.69
623 896 5.362430 CCTAAATCGAAAATTGGGGGATTGA 59.638 40.000 0.00 0.00 0.00 2.57
624 897 5.453198 CCCTAAATCGAAAATTGGGGGATTG 60.453 44.000 17.45 0.00 42.08 2.67
625 898 4.653801 CCCTAAATCGAAAATTGGGGGATT 59.346 41.667 17.45 0.00 42.08 3.01
626 899 4.223144 CCCTAAATCGAAAATTGGGGGAT 58.777 43.478 17.45 0.00 42.08 3.85
627 900 3.637769 CCCTAAATCGAAAATTGGGGGA 58.362 45.455 17.45 0.00 42.08 4.81
630 903 5.359860 AGCTAACCCTAAATCGAAAATTGGG 59.640 40.000 11.52 11.52 39.06 4.12
631 904 6.451064 AGCTAACCCTAAATCGAAAATTGG 57.549 37.500 0.00 0.00 0.00 3.16
632 905 7.484959 GTGAAGCTAACCCTAAATCGAAAATTG 59.515 37.037 0.00 0.00 0.00 2.32
633 906 7.393515 AGTGAAGCTAACCCTAAATCGAAAATT 59.606 33.333 0.00 0.00 0.00 1.82
634 907 6.884836 AGTGAAGCTAACCCTAAATCGAAAAT 59.115 34.615 0.00 0.00 0.00 1.82
635 908 6.148811 CAGTGAAGCTAACCCTAAATCGAAAA 59.851 38.462 0.00 0.00 0.00 2.29
636 909 5.642063 CAGTGAAGCTAACCCTAAATCGAAA 59.358 40.000 0.00 0.00 0.00 3.46
637 910 5.175859 CAGTGAAGCTAACCCTAAATCGAA 58.824 41.667 0.00 0.00 0.00 3.71
638 911 4.755411 CAGTGAAGCTAACCCTAAATCGA 58.245 43.478 0.00 0.00 0.00 3.59
639 912 3.309954 GCAGTGAAGCTAACCCTAAATCG 59.690 47.826 0.00 0.00 0.00 3.34
640 913 4.518249 AGCAGTGAAGCTAACCCTAAATC 58.482 43.478 0.00 0.00 44.50 2.17
641 914 4.576330 AGCAGTGAAGCTAACCCTAAAT 57.424 40.909 0.00 0.00 44.50 1.40
642 915 4.072131 CAAGCAGTGAAGCTAACCCTAAA 58.928 43.478 0.00 0.00 45.89 1.85
643 916 3.674997 CAAGCAGTGAAGCTAACCCTAA 58.325 45.455 0.00 0.00 45.89 2.69
644 917 2.615493 GCAAGCAGTGAAGCTAACCCTA 60.615 50.000 0.00 0.00 45.89 3.53
645 918 1.884067 GCAAGCAGTGAAGCTAACCCT 60.884 52.381 0.00 0.00 45.89 4.34
646 919 0.523519 GCAAGCAGTGAAGCTAACCC 59.476 55.000 0.00 0.00 45.89 4.11
647 920 1.198637 CAGCAAGCAGTGAAGCTAACC 59.801 52.381 0.00 0.00 45.89 2.85
648 921 2.146342 TCAGCAAGCAGTGAAGCTAAC 58.854 47.619 0.00 0.00 45.89 2.34
649 922 2.549064 TCAGCAAGCAGTGAAGCTAA 57.451 45.000 0.00 0.00 45.89 3.09
650 923 2.775911 ATCAGCAAGCAGTGAAGCTA 57.224 45.000 0.00 0.00 45.89 3.32
652 925 1.135460 GGAATCAGCAAGCAGTGAAGC 60.135 52.381 0.00 0.00 0.00 3.86
653 926 2.434428 AGGAATCAGCAAGCAGTGAAG 58.566 47.619 0.00 0.00 0.00 3.02
654 927 2.555325 CAAGGAATCAGCAAGCAGTGAA 59.445 45.455 0.00 0.00 0.00 3.18
655 928 2.156917 CAAGGAATCAGCAAGCAGTGA 58.843 47.619 0.00 0.00 0.00 3.41
656 929 1.884579 ACAAGGAATCAGCAAGCAGTG 59.115 47.619 0.00 0.00 0.00 3.66
657 930 1.884579 CACAAGGAATCAGCAAGCAGT 59.115 47.619 0.00 0.00 0.00 4.40
658 931 1.402456 GCACAAGGAATCAGCAAGCAG 60.402 52.381 0.00 0.00 0.00 4.24
659 932 0.599558 GCACAAGGAATCAGCAAGCA 59.400 50.000 0.00 0.00 0.00 3.91
660 933 0.886563 AGCACAAGGAATCAGCAAGC 59.113 50.000 0.00 0.00 0.00 4.01
661 934 1.402456 GCAGCACAAGGAATCAGCAAG 60.402 52.381 0.00 0.00 0.00 4.01
662 935 0.599558 GCAGCACAAGGAATCAGCAA 59.400 50.000 0.00 0.00 0.00 3.91
663 936 1.579964 CGCAGCACAAGGAATCAGCA 61.580 55.000 0.00 0.00 0.00 4.41
664 937 1.136147 CGCAGCACAAGGAATCAGC 59.864 57.895 0.00 0.00 0.00 4.26
678 951 0.665068 TTGTAGTGTACCGTGCGCAG 60.665 55.000 12.22 1.57 0.00 5.18
679 952 0.038067 ATTGTAGTGTACCGTGCGCA 60.038 50.000 5.66 5.66 0.00 6.09
680 953 0.368907 CATTGTAGTGTACCGTGCGC 59.631 55.000 0.00 0.00 0.00 6.09
681 954 0.368907 GCATTGTAGTGTACCGTGCG 59.631 55.000 0.00 0.00 31.61 5.34
682 955 1.434555 TGCATTGTAGTGTACCGTGC 58.565 50.000 0.00 0.00 38.05 5.34
683 956 3.258228 TCATGCATTGTAGTGTACCGTG 58.742 45.455 0.00 0.00 0.00 4.94
684 957 3.603158 TCATGCATTGTAGTGTACCGT 57.397 42.857 0.00 0.00 0.00 4.83
685 958 3.682377 TGTTCATGCATTGTAGTGTACCG 59.318 43.478 0.00 0.00 0.00 4.02
686 959 5.353956 TCATGTTCATGCATTGTAGTGTACC 59.646 40.000 0.00 0.00 0.00 3.34
687 960 6.421377 TCATGTTCATGCATTGTAGTGTAC 57.579 37.500 0.00 0.00 0.00 2.90
688 961 6.128035 GGTTCATGTTCATGCATTGTAGTGTA 60.128 38.462 0.00 0.00 0.00 2.90
689 962 5.335897 GGTTCATGTTCATGCATTGTAGTGT 60.336 40.000 0.00 0.00 0.00 3.55
690 963 5.097529 GGTTCATGTTCATGCATTGTAGTG 58.902 41.667 0.00 0.00 0.00 2.74
691 964 4.142622 CGGTTCATGTTCATGCATTGTAGT 60.143 41.667 0.00 0.00 0.00 2.73
692 965 4.345288 CGGTTCATGTTCATGCATTGTAG 58.655 43.478 0.00 0.00 0.00 2.74
693 966 3.128415 CCGGTTCATGTTCATGCATTGTA 59.872 43.478 0.00 0.00 0.00 2.41
694 967 2.094597 CCGGTTCATGTTCATGCATTGT 60.095 45.455 0.00 0.00 0.00 2.71
695 968 2.094597 ACCGGTTCATGTTCATGCATTG 60.095 45.455 0.00 0.00 0.00 2.82
696 969 2.170166 ACCGGTTCATGTTCATGCATT 58.830 42.857 0.00 0.00 0.00 3.56
697 970 1.838112 ACCGGTTCATGTTCATGCAT 58.162 45.000 0.00 0.00 0.00 3.96
698 971 1.614996 AACCGGTTCATGTTCATGCA 58.385 45.000 15.86 0.00 0.00 3.96
699 972 3.190535 AGTTAACCGGTTCATGTTCATGC 59.809 43.478 26.16 0.00 0.00 4.06
700 973 5.371115 AAGTTAACCGGTTCATGTTCATG 57.629 39.130 26.16 6.46 0.00 3.07
701 974 5.646360 CCTAAGTTAACCGGTTCATGTTCAT 59.354 40.000 26.16 5.90 0.00 2.57
702 975 4.998672 CCTAAGTTAACCGGTTCATGTTCA 59.001 41.667 26.16 0.18 0.00 3.18
703 976 4.393990 CCCTAAGTTAACCGGTTCATGTTC 59.606 45.833 26.16 8.94 0.00 3.18
704 977 4.329392 CCCTAAGTTAACCGGTTCATGTT 58.671 43.478 26.16 15.29 0.00 2.71
705 978 3.871074 GCCCTAAGTTAACCGGTTCATGT 60.871 47.826 26.16 10.84 0.00 3.21
706 979 2.681344 GCCCTAAGTTAACCGGTTCATG 59.319 50.000 26.16 9.18 0.00 3.07
707 980 2.306512 TGCCCTAAGTTAACCGGTTCAT 59.693 45.455 26.16 11.05 0.00 2.57
708 981 1.698532 TGCCCTAAGTTAACCGGTTCA 59.301 47.619 26.16 10.88 0.00 3.18
709 982 2.477845 TGCCCTAAGTTAACCGGTTC 57.522 50.000 26.16 10.91 0.00 3.62
710 983 2.306512 TGATGCCCTAAGTTAACCGGTT 59.693 45.455 25.64 25.64 0.00 4.44
711 984 1.910671 TGATGCCCTAAGTTAACCGGT 59.089 47.619 0.00 0.00 0.00 5.28
712 985 2.702592 TGATGCCCTAAGTTAACCGG 57.297 50.000 0.00 0.00 0.00 5.28
713 986 4.881850 AGAAATGATGCCCTAAGTTAACCG 59.118 41.667 0.88 0.00 0.00 4.44
714 987 5.652452 ACAGAAATGATGCCCTAAGTTAACC 59.348 40.000 0.88 0.00 0.00 2.85
715 988 6.759497 ACAGAAATGATGCCCTAAGTTAAC 57.241 37.500 0.00 0.00 0.00 2.01
716 989 6.945435 TGAACAGAAATGATGCCCTAAGTTAA 59.055 34.615 0.00 0.00 0.00 2.01
717 990 6.480763 TGAACAGAAATGATGCCCTAAGTTA 58.519 36.000 0.00 0.00 0.00 2.24
718 991 5.324409 TGAACAGAAATGATGCCCTAAGTT 58.676 37.500 0.00 0.00 0.00 2.66
719 992 4.922206 TGAACAGAAATGATGCCCTAAGT 58.078 39.130 0.00 0.00 0.00 2.24
720 993 5.902613 TTGAACAGAAATGATGCCCTAAG 57.097 39.130 0.00 0.00 0.00 2.18
721 994 6.211184 ACAATTGAACAGAAATGATGCCCTAA 59.789 34.615 13.59 0.00 0.00 2.69
722 995 5.716228 ACAATTGAACAGAAATGATGCCCTA 59.284 36.000 13.59 0.00 0.00 3.53
723 996 4.529377 ACAATTGAACAGAAATGATGCCCT 59.471 37.500 13.59 0.00 0.00 5.19
724 997 4.628333 CACAATTGAACAGAAATGATGCCC 59.372 41.667 13.59 0.00 0.00 5.36
725 998 4.092383 GCACAATTGAACAGAAATGATGCC 59.908 41.667 13.59 0.00 0.00 4.40
726 999 4.092383 GGCACAATTGAACAGAAATGATGC 59.908 41.667 13.59 6.58 32.13 3.91
727 1000 5.119588 GTGGCACAATTGAACAGAAATGATG 59.880 40.000 13.59 0.00 44.16 3.07
728 1001 5.011329 AGTGGCACAATTGAACAGAAATGAT 59.989 36.000 21.41 0.00 44.16 2.45
729 1002 4.341806 AGTGGCACAATTGAACAGAAATGA 59.658 37.500 21.41 0.00 44.16 2.57
730 1003 4.446385 CAGTGGCACAATTGAACAGAAATG 59.554 41.667 21.41 0.00 44.16 2.32
731 1004 4.341806 TCAGTGGCACAATTGAACAGAAAT 59.658 37.500 21.41 0.00 44.16 2.17
732 1005 3.698539 TCAGTGGCACAATTGAACAGAAA 59.301 39.130 21.41 0.00 44.16 2.52
733 1006 3.286353 TCAGTGGCACAATTGAACAGAA 58.714 40.909 21.41 0.00 44.16 3.02
734 1007 2.929641 TCAGTGGCACAATTGAACAGA 58.070 42.857 21.41 4.66 44.16 3.41
735 1008 3.928727 ATCAGTGGCACAATTGAACAG 57.071 42.857 21.41 2.42 44.16 3.16
736 1009 3.635836 TCAATCAGTGGCACAATTGAACA 59.364 39.130 30.14 17.41 44.16 3.18
737 1010 4.241590 TCAATCAGTGGCACAATTGAAC 57.758 40.909 30.14 3.08 44.16 3.18
738 1011 4.523558 TCATCAATCAGTGGCACAATTGAA 59.476 37.500 33.04 23.04 44.16 2.69
739 1012 4.080687 TCATCAATCAGTGGCACAATTGA 58.919 39.130 32.24 32.24 44.16 2.57
740 1013 4.443913 TCATCAATCAGTGGCACAATTG 57.556 40.909 26.85 26.85 44.16 2.32
741 1014 4.616604 CGTTCATCAATCAGTGGCACAATT 60.617 41.667 21.41 15.51 44.16 2.32
742 1015 3.119743 CGTTCATCAATCAGTGGCACAAT 60.120 43.478 21.41 10.04 44.16 2.71
754 1027 8.465999 TGCAATAAGAATTTACCGTTCATCAAT 58.534 29.630 0.00 0.00 0.00 2.57
756 1029 7.335673 TCTGCAATAAGAATTTACCGTTCATCA 59.664 33.333 0.00 0.00 0.00 3.07
757 1030 7.693952 TCTGCAATAAGAATTTACCGTTCATC 58.306 34.615 0.00 0.00 0.00 2.92
758 1031 7.624360 TCTGCAATAAGAATTTACCGTTCAT 57.376 32.000 0.00 0.00 0.00 2.57
759 1032 7.441890 TTCTGCAATAAGAATTTACCGTTCA 57.558 32.000 0.00 0.00 31.19 3.18
776 1049 7.975616 GCCTACATTTCTTCAATAATTCTGCAA 59.024 33.333 0.00 0.00 0.00 4.08
777 1050 7.340232 AGCCTACATTTCTTCAATAATTCTGCA 59.660 33.333 0.00 0.00 0.00 4.41
779 1052 9.727627 GAAGCCTACATTTCTTCAATAATTCTG 57.272 33.333 0.00 0.00 36.96 3.02
780 1053 9.692325 AGAAGCCTACATTTCTTCAATAATTCT 57.308 29.630 0.00 0.00 38.83 2.40
789 1062 7.538575 TGCATAAAAGAAGCCTACATTTCTTC 58.461 34.615 0.52 0.00 41.45 2.87
790 1063 7.466746 TGCATAAAAGAAGCCTACATTTCTT 57.533 32.000 0.00 0.00 43.49 2.52
791 1064 7.466746 TTGCATAAAAGAAGCCTACATTTCT 57.533 32.000 0.00 0.00 35.25 2.52
805 1078 6.005583 TCAAGTCTCAGCTTTGCATAAAAG 57.994 37.500 0.00 0.00 46.90 2.27
806 1079 6.389830 TTCAAGTCTCAGCTTTGCATAAAA 57.610 33.333 0.00 0.00 0.00 1.52
807 1080 6.207221 TCATTCAAGTCTCAGCTTTGCATAAA 59.793 34.615 0.00 0.00 0.00 1.40
808 1081 5.706833 TCATTCAAGTCTCAGCTTTGCATAA 59.293 36.000 0.00 0.00 0.00 1.90
809 1082 5.247862 TCATTCAAGTCTCAGCTTTGCATA 58.752 37.500 0.00 0.00 0.00 3.14
810 1083 4.077108 TCATTCAAGTCTCAGCTTTGCAT 58.923 39.130 0.00 0.00 0.00 3.96
811 1084 3.479489 TCATTCAAGTCTCAGCTTTGCA 58.521 40.909 0.00 0.00 0.00 4.08
812 1085 3.750130 TCTCATTCAAGTCTCAGCTTTGC 59.250 43.478 0.00 0.00 0.00 3.68
814 1087 6.941436 AGAATTCTCATTCAAGTCTCAGCTTT 59.059 34.615 0.88 0.00 41.37 3.51
815 1088 6.474630 AGAATTCTCATTCAAGTCTCAGCTT 58.525 36.000 0.88 0.00 41.37 3.74
816 1089 6.052405 AGAATTCTCATTCAAGTCTCAGCT 57.948 37.500 0.88 0.00 41.37 4.24
818 1091 8.034215 ACACTAGAATTCTCATTCAAGTCTCAG 58.966 37.037 12.24 1.36 41.37 3.35
819 1092 7.816513 CACACTAGAATTCTCATTCAAGTCTCA 59.183 37.037 12.24 0.00 41.37 3.27
820 1093 7.816995 ACACACTAGAATTCTCATTCAAGTCTC 59.183 37.037 12.24 0.00 41.37 3.36
821 1094 7.675062 ACACACTAGAATTCTCATTCAAGTCT 58.325 34.615 12.24 0.00 41.37 3.24
823 1096 8.562892 CAAACACACTAGAATTCTCATTCAAGT 58.437 33.333 12.24 5.85 41.37 3.16
825 1098 8.450578 ACAAACACACTAGAATTCTCATTCAA 57.549 30.769 12.24 0.00 41.37 2.69
826 1099 9.554395 TTACAAACACACTAGAATTCTCATTCA 57.446 29.630 12.24 0.00 41.37 2.57
828 1101 9.778741 TCTTACAAACACACTAGAATTCTCATT 57.221 29.630 12.24 0.00 0.00 2.57
829 1102 9.209175 GTCTTACAAACACACTAGAATTCTCAT 57.791 33.333 12.24 0.00 0.00 2.90
830 1103 7.656137 GGTCTTACAAACACACTAGAATTCTCA 59.344 37.037 12.24 0.00 0.00 3.27
832 1105 7.506114 TGGTCTTACAAACACACTAGAATTCT 58.494 34.615 13.56 13.56 0.00 2.40
833 1106 7.724305 TGGTCTTACAAACACACTAGAATTC 57.276 36.000 0.00 0.00 0.00 2.17
834 1107 7.719633 ACATGGTCTTACAAACACACTAGAATT 59.280 33.333 0.00 0.00 0.00 2.17
835 1108 7.224297 ACATGGTCTTACAAACACACTAGAAT 58.776 34.615 0.00 0.00 0.00 2.40
836 1109 6.588204 ACATGGTCTTACAAACACACTAGAA 58.412 36.000 0.00 0.00 0.00 2.10
839 1112 8.911918 ATTAACATGGTCTTACAAACACACTA 57.088 30.769 0.00 0.00 0.00 2.74
840 1113 7.719633 AGATTAACATGGTCTTACAAACACACT 59.280 33.333 0.00 0.00 0.00 3.55
842 1115 9.733556 ATAGATTAACATGGTCTTACAAACACA 57.266 29.630 0.00 0.00 0.00 3.72
852 1125 9.784531 CCACATAGAAATAGATTAACATGGTCT 57.215 33.333 0.00 0.00 0.00 3.85
853 1126 9.561069 ACCACATAGAAATAGATTAACATGGTC 57.439 33.333 0.00 0.00 28.08 4.02
874 1147 9.935241 ACATTGTAATTAATTGCAAATACCACA 57.065 25.926 27.95 11.78 43.62 4.17
896 1468 9.340695 CGACAACAAATATGACATGTAAACATT 57.659 29.630 0.00 0.00 33.61 2.71
899 1471 9.554724 AATCGACAACAAATATGACATGTAAAC 57.445 29.630 0.00 0.00 0.00 2.01
934 1506 6.827586 TTAATTTACAACAGGGTGATCCAC 57.172 37.500 0.00 0.00 38.24 4.02
935 1507 7.578571 GCAATTAATTTACAACAGGGTGATCCA 60.579 37.037 0.00 0.00 38.24 3.41
936 1508 6.756542 GCAATTAATTTACAACAGGGTGATCC 59.243 38.462 0.00 0.00 0.00 3.36
937 1509 7.547227 AGCAATTAATTTACAACAGGGTGATC 58.453 34.615 0.00 0.00 0.00 2.92
938 1510 7.480760 AGCAATTAATTTACAACAGGGTGAT 57.519 32.000 0.00 0.00 0.00 3.06
939 1511 6.909550 AGCAATTAATTTACAACAGGGTGA 57.090 33.333 0.00 0.00 0.00 4.02
942 1514 7.100458 AGCTAGCAATTAATTTACAACAGGG 57.900 36.000 18.83 0.00 0.00 4.45
979 1551 1.446272 CTGGTTCTTCTCCGGCGAC 60.446 63.158 9.30 0.00 0.00 5.19
980 1552 1.595993 CTCTGGTTCTTCTCCGGCGA 61.596 60.000 9.30 0.00 0.00 5.54
981 1553 1.153745 CTCTGGTTCTTCTCCGGCG 60.154 63.158 0.00 0.00 0.00 6.46
982 1554 0.827368 ATCTCTGGTTCTTCTCCGGC 59.173 55.000 0.00 0.00 0.00 6.13
983 1555 1.137872 CCATCTCTGGTTCTTCTCCGG 59.862 57.143 0.00 0.00 37.79 5.14
984 1556 1.137872 CCCATCTCTGGTTCTTCTCCG 59.862 57.143 0.00 0.00 41.37 4.63
985 1557 1.488393 CCCCATCTCTGGTTCTTCTCC 59.512 57.143 0.00 0.00 41.37 3.71
1029 1601 4.284550 TGCCACTTGGACAGCCCC 62.285 66.667 0.00 0.00 37.39 5.80
1104 1676 1.098869 CGAGGTAGAGCTGCTTCTCA 58.901 55.000 2.53 0.00 35.59 3.27
1377 1955 2.124942 GGCTTCAGCTTCTCCCCG 60.125 66.667 0.00 0.00 41.70 5.73
1488 2066 2.664851 CTCTGGTTGAACGCGGCA 60.665 61.111 12.47 5.25 0.00 5.69
1713 2291 3.923864 AGAGCCAACGGTGTCGCA 61.924 61.111 0.00 0.00 40.63 5.10
1817 2395 2.203209 CAGCCGGCATAACCTCCC 60.203 66.667 31.54 0.00 35.61 4.30
2169 2747 3.319755 CCACACAACAAATGAGGCAATC 58.680 45.455 0.00 0.00 0.00 2.67
2205 2783 3.325293 ACCATGCAGACACTACTTCTG 57.675 47.619 0.00 0.00 43.01 3.02
2258 2836 4.193865 TCATACATCAAGAGCCACACATG 58.806 43.478 0.00 0.00 0.00 3.21
2275 2853 2.000447 GGCAACTTCGGTGACTCATAC 59.000 52.381 0.00 0.00 0.00 2.39
2862 3440 1.135972 CCTGATCGTTGCAAGGTTTCG 60.136 52.381 17.96 9.36 0.00 3.46
3031 3609 7.877612 ACTGCTTTTAATAAATTGGTTGAAGGG 59.122 33.333 0.00 0.00 0.00 3.95
3056 3634 5.098211 GCAGGAAGCTGTTTATCAATTCAC 58.902 41.667 0.00 0.00 41.15 3.18
3353 3931 7.746703 GGAAAACTCCCACCATATATAAGTCT 58.253 38.462 0.00 0.00 0.00 3.24
3369 3947 4.607293 AAATCTGCAAAGGGAAAACTCC 57.393 40.909 0.00 0.00 0.00 3.85
3370 3948 6.642540 CACTAAAATCTGCAAAGGGAAAACTC 59.357 38.462 0.00 0.00 0.00 3.01
3371 3949 6.462909 CCACTAAAATCTGCAAAGGGAAAACT 60.463 38.462 0.00 0.00 0.00 2.66
3383 3962 2.558359 AGGTGTTGCCACTAAAATCTGC 59.442 45.455 0.00 0.00 41.53 4.26
4044 4631 5.952347 AGCTAAATGGGGTCCTTTTCTTAAG 59.048 40.000 0.00 0.00 33.78 1.85
4077 4664 4.904116 TGAAAGCTGAACAACGTGTAAAG 58.096 39.130 0.00 0.00 0.00 1.85
4275 4862 8.131627 AGAATCATACTCCCTCCAATCCATATA 58.868 37.037 0.00 0.00 0.00 0.86
4284 4871 6.211584 GCTATTACAGAATCATACTCCCTCCA 59.788 42.308 0.00 0.00 0.00 3.86
4326 4923 7.968405 GGATCAATATTCTACCACACACAAAAC 59.032 37.037 0.00 0.00 0.00 2.43
4331 4928 5.930135 AGGGATCAATATTCTACCACACAC 58.070 41.667 0.00 0.00 0.00 3.82
4433 5030 3.742433 ATATGCTCTCGAAGAAGGTGG 57.258 47.619 0.00 0.00 34.09 4.61
4435 5032 5.069648 TGATCAATATGCTCTCGAAGAAGGT 59.930 40.000 0.00 0.00 34.09 3.50
4770 5367 4.885907 TCTACCTGAATCACTAGGGTAACG 59.114 45.833 0.00 0.00 38.42 3.18
4804 5401 6.599244 TCCTCAGCTGTATTAACCATCAAAAG 59.401 38.462 14.67 0.00 0.00 2.27
4900 5497 4.178545 AGACAACCATGCAAAGTAATGC 57.821 40.909 0.00 0.00 46.58 3.56
4949 5546 4.335594 GGAACACCAGCCTAATACAATCAC 59.664 45.833 0.00 0.00 0.00 3.06
5175 5772 7.547722 AGAATGTATGCATATAACGCCGAAATA 59.452 33.333 10.16 0.00 34.39 1.40
5400 5997 1.603326 GGCGGTTTTCCTAAACAACGA 59.397 47.619 0.00 0.00 44.37 3.85
5403 6000 3.288964 TCAAGGCGGTTTTCCTAAACAA 58.711 40.909 0.00 0.00 44.37 2.83
5560 6157 0.438830 CGTTCTACGTTTGAGCCAGC 59.561 55.000 0.00 0.00 36.74 4.85
5573 6170 8.644619 CGTAAGAAAAATGTGAGAATCGTTCTA 58.355 33.333 1.08 0.00 39.36 2.10
5581 6178 4.394729 AGGCCGTAAGAAAAATGTGAGAA 58.605 39.130 0.00 0.00 43.02 2.87
5629 6226 5.483937 AGGGTAAATACATCTGTCACAGTCA 59.516 40.000 4.28 0.00 32.61 3.41
5664 6262 3.456277 AGTAAGAGGCTGGACAATAAGGG 59.544 47.826 0.00 0.00 0.00 3.95
5824 6422 4.159135 AGGCTTGCCATAAACAGAGAAATG 59.841 41.667 14.54 0.00 0.00 2.32
5952 6550 1.790481 GCCTTTGACGTTCGCATTAGC 60.790 52.381 0.00 0.00 37.42 3.09
6091 6718 7.834881 TTCTTCAGTCCTCTTTCTACTTACA 57.165 36.000 0.00 0.00 0.00 2.41
6115 6742 6.210185 GCATGGGCTTTGAGAGGAATAATTAT 59.790 38.462 0.00 0.00 36.96 1.28
6140 6767 2.224549 TGCGAAATAACAACTGGTTCCG 59.775 45.455 0.00 0.00 40.96 4.30
6141 6768 3.365969 CCTGCGAAATAACAACTGGTTCC 60.366 47.826 0.00 0.00 40.96 3.62
6147 6774 7.532571 GGTAAATAACCTGCGAAATAACAACT 58.467 34.615 0.00 0.00 45.75 3.16
6201 6828 7.530010 CAATGTGATAAAACGTCAGGAGAAAT 58.470 34.615 0.00 0.00 0.00 2.17
6203 6830 5.106712 GCAATGTGATAAAACGTCAGGAGAA 60.107 40.000 0.00 0.00 0.00 2.87
6298 6926 2.176546 CTTTGGCACGTGCATCCG 59.823 61.111 38.60 21.29 44.36 4.18
6375 7030 1.975327 CGGGCTCACCTTCTTCTGA 59.025 57.895 0.00 0.00 36.97 3.27
6400 7055 4.870991 CCTATGAAGAACTCCTTTTCGGAC 59.129 45.833 0.00 0.00 36.69 4.79
6410 7065 4.081087 TGTTACCCAGCCTATGAAGAACTC 60.081 45.833 0.00 0.00 0.00 3.01
6417 7072 2.026636 GGTTGTGTTACCCAGCCTATGA 60.027 50.000 0.00 0.00 31.17 2.15
6431 7086 2.530701 TGGGTGTCAAAAAGGTTGTGT 58.469 42.857 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.