Multiple sequence alignment - TraesCS6D01G392600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G392600 chr6D 100.000 3626 0 0 1 3626 467009060 467012685 0.000000e+00 6697
1 TraesCS6D01G392600 chr6D 87.131 474 44 5 2625 3089 467021675 467022140 4.150000e-144 521
2 TraesCS6D01G392600 chr6D 83.582 335 33 11 3306 3619 467022154 467022487 9.850000e-76 294
3 TraesCS6D01G392600 chr6B 91.488 2197 178 7 922 3116 712230210 712232399 0.000000e+00 3013
4 TraesCS6D01G392600 chr6B 88.997 927 77 11 4 929 712229275 712230177 0.000000e+00 1123
5 TraesCS6D01G392600 chr6B 85.897 156 9 5 3459 3610 712232579 712232725 1.740000e-33 154
6 TraesCS6D01G392600 chr6A 91.132 2199 153 14 938 3113 613315140 613317319 0.000000e+00 2944
7 TraesCS6D01G392600 chr6A 92.024 2006 129 13 1120 3113 613322511 613324497 0.000000e+00 2789
8 TraesCS6D01G392600 chr6A 87.977 2304 231 22 827 3113 613305951 613308225 0.000000e+00 2678
9 TraesCS6D01G392600 chr6A 87.678 844 90 7 569 1410 613282481 613283312 0.000000e+00 970
10 TraesCS6D01G392600 chr6A 91.523 696 34 7 2427 3113 613312287 613312966 0.000000e+00 935
11 TraesCS6D01G392600 chr6A 84.574 752 90 10 10 756 613304990 613305720 0.000000e+00 723
12 TraesCS6D01G392600 chr6A 83.889 720 75 13 1 718 613320715 613321395 0.000000e+00 649
13 TraesCS6D01G392600 chr6A 84.985 666 69 7 1 664 613311625 613312261 0.000000e+00 647
14 TraesCS6D01G392600 chr6A 86.333 439 54 3 1 438 613275811 613276244 1.180000e-129 473
15 TraesCS6D01G392600 chr6A 81.765 340 39 10 3280 3596 613308251 613308590 2.780000e-66 263
16 TraesCS6D01G392600 chr6A 81.765 340 39 10 3280 3596 613317345 613317684 2.780000e-66 263
17 TraesCS6D01G392600 chr6A 81.471 340 40 10 3280 3596 613324523 613324862 1.290000e-64 257
18 TraesCS6D01G392600 chr6A 87.293 181 23 0 938 1118 613321862 613322042 1.320000e-49 207
19 TraesCS6D01G392600 chrUn 84.028 720 74 13 1 718 328091667 328092347 0.000000e+00 654
20 TraesCS6D01G392600 chrUn 94.643 168 9 0 3119 3286 115108064 115107897 9.990000e-66 261
21 TraesCS6D01G392600 chrUn 87.293 181 23 0 938 1118 328092814 328092994 1.320000e-49 207
22 TraesCS6D01G392600 chr5D 78.339 554 113 7 2069 2618 555192008 555192558 5.760000e-93 351
23 TraesCS6D01G392600 chr5D 95.808 167 7 0 3114 3280 498721902 498722068 1.660000e-68 270
24 TraesCS6D01G392600 chr1D 95.783 166 6 1 3116 3280 126223338 126223503 2.150000e-67 267
25 TraesCS6D01G392600 chr1D 95.758 165 7 0 3116 3280 160451492 160451656 2.150000e-67 267
26 TraesCS6D01G392600 chr7D 92.778 180 11 2 3107 3285 171307977 171308155 3.590000e-65 259
27 TraesCS6D01G392600 chr7D 90.155 193 15 4 3096 3285 406904214 406904405 7.770000e-62 248
28 TraesCS6D01G392600 chr2D 94.118 170 10 0 3111 3280 402716906 402716737 3.590000e-65 259
29 TraesCS6D01G392600 chr2B 92.778 180 12 1 3101 3280 797534835 797534657 3.590000e-65 259
30 TraesCS6D01G392600 chr3B 95.062 162 8 0 3119 3280 684066048 684066209 4.650000e-64 255
31 TraesCS6D01G392600 chr2A 72.840 324 82 5 2231 2551 147537197 147536877 4.950000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G392600 chr6D 467009060 467012685 3625 False 6697.000000 6697 100.0000 1 3626 1 chr6D.!!$F1 3625
1 TraesCS6D01G392600 chr6D 467021675 467022487 812 False 407.500000 521 85.3565 2625 3619 2 chr6D.!!$F2 994
2 TraesCS6D01G392600 chr6B 712229275 712232725 3450 False 1430.000000 3013 88.7940 4 3610 3 chr6B.!!$F1 3606
3 TraesCS6D01G392600 chr6A 613304990 613324862 19872 False 1123.181818 2944 86.2180 1 3596 11 chr6A.!!$F3 3595
4 TraesCS6D01G392600 chr6A 613282481 613283312 831 False 970.000000 970 87.6780 569 1410 1 chr6A.!!$F2 841
5 TraesCS6D01G392600 chrUn 328091667 328092994 1327 False 430.500000 654 85.6605 1 1118 2 chrUn.!!$F1 1117
6 TraesCS6D01G392600 chr5D 555192008 555192558 550 False 351.000000 351 78.3390 2069 2618 1 chr5D.!!$F2 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 16915 0.320374 CCAGCACGACTTAACCTCCA 59.68 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2764 19301 0.17902 CACAAGCTCAACCTCCACCA 60.179 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.750501 CGGAGACTAAGTTTTTGACATCGATA 59.249 38.462 0.00 0.00 0.00 2.92
73 74 8.447833 GTTTTTGACATCGATATCAACAAGGTA 58.552 33.333 18.34 0.42 34.61 3.08
87 6732 4.451629 ACAAGGTAGTCGTTGATGTAGG 57.548 45.455 7.47 0.00 40.52 3.18
105 6750 3.252974 AGGTGAGCTCGATTGTAAAGG 57.747 47.619 9.64 0.00 0.00 3.11
111 6756 5.233263 GTGAGCTCGATTGTAAAGGAGAATC 59.767 44.000 9.64 0.00 33.59 2.52
118 6763 3.604875 TGTAAAGGAGAATCGGTCACC 57.395 47.619 0.00 0.00 37.26 4.02
122 6767 1.938585 AGGAGAATCGGTCACCTGAA 58.061 50.000 5.46 0.00 44.87 3.02
147 6792 1.065854 AGCTGTTACCTCCTGCATCAC 60.066 52.381 0.00 0.00 0.00 3.06
329 6974 2.879756 GCTGGGGTTGCTACTGAAATCA 60.880 50.000 0.00 0.00 0.00 2.57
364 7009 2.376518 AGAAAGCATCCCCTTCTGTCAA 59.623 45.455 0.00 0.00 0.00 3.18
432 7077 1.471684 GGCCACTCAGCTTCAGATTTG 59.528 52.381 0.00 0.00 0.00 2.32
460 7105 1.947456 GAAGCCGTTGAAGGTGAGTTT 59.053 47.619 0.00 0.00 0.00 2.66
514 7159 4.398319 AGGTTAACAACAATGGTGAGGAG 58.602 43.478 4.82 0.00 0.00 3.69
515 7160 3.506067 GGTTAACAACAATGGTGAGGAGG 59.494 47.826 4.82 0.00 0.00 4.30
516 7161 4.394729 GTTAACAACAATGGTGAGGAGGA 58.605 43.478 4.82 0.00 0.00 3.71
517 7162 2.867109 ACAACAATGGTGAGGAGGAG 57.133 50.000 4.82 0.00 0.00 3.69
518 7163 1.352352 ACAACAATGGTGAGGAGGAGG 59.648 52.381 4.82 0.00 0.00 4.30
519 7164 1.630369 CAACAATGGTGAGGAGGAGGA 59.370 52.381 0.00 0.00 0.00 3.71
520 7165 1.577736 ACAATGGTGAGGAGGAGGAG 58.422 55.000 0.00 0.00 0.00 3.69
561 7206 4.753610 CCATGTCCATAGCTGAGTTACATG 59.246 45.833 17.28 17.28 41.35 3.21
626 7271 0.388907 CAGAAATTGTGCGGCCCAAG 60.389 55.000 3.93 0.00 0.00 3.61
651 7296 8.196771 AGAATGCTCAAGATAACAGAAGACTAG 58.803 37.037 0.00 0.00 0.00 2.57
707 16442 5.574970 ACAAGAATCTTGGACTTCTTCCT 57.425 39.130 24.77 0.00 46.10 3.36
749 16728 6.421801 GGTTGTGAACAGATTTTTCCAATCAG 59.578 38.462 0.00 0.00 0.00 2.90
776 16765 1.143073 GTGAAACCCAGACTCCAGGTT 59.857 52.381 0.00 0.00 45.79 3.50
780 16769 0.399949 ACCCAGACTCCAGGTTGTCA 60.400 55.000 14.68 0.00 35.81 3.58
803 16792 1.553706 ATACTTCAAGTCGTCGGGGT 58.446 50.000 0.00 0.00 0.00 4.95
891 16915 0.320374 CCAGCACGACTTAACCTCCA 59.680 55.000 0.00 0.00 0.00 3.86
892 16916 1.066143 CCAGCACGACTTAACCTCCAT 60.066 52.381 0.00 0.00 0.00 3.41
895 16919 2.501723 AGCACGACTTAACCTCCATCAT 59.498 45.455 0.00 0.00 0.00 2.45
896 16920 2.609459 GCACGACTTAACCTCCATCATG 59.391 50.000 0.00 0.00 0.00 3.07
897 16921 3.861840 CACGACTTAACCTCCATCATGT 58.138 45.455 0.00 0.00 0.00 3.21
898 16922 4.253685 CACGACTTAACCTCCATCATGTT 58.746 43.478 0.00 0.00 0.00 2.71
899 16923 4.695455 CACGACTTAACCTCCATCATGTTT 59.305 41.667 0.00 0.00 0.00 2.83
900 16924 5.872617 CACGACTTAACCTCCATCATGTTTA 59.127 40.000 0.00 0.00 0.00 2.01
901 16925 5.873164 ACGACTTAACCTCCATCATGTTTAC 59.127 40.000 0.00 0.00 0.00 2.01
1009 17073 3.057033 CCTCTTTGGCAGAATGTTTCCTG 60.057 47.826 0.00 0.00 39.31 3.86
1019 17083 2.957402 ATGTTTCCTGTCTCTTGGCA 57.043 45.000 0.00 0.00 0.00 4.92
1171 17702 4.081476 TGTGGATAGATGACCTGTTGAGTG 60.081 45.833 0.00 0.00 0.00 3.51
1242 17773 5.073428 CCCCTAAGCTTTCAAGATAATCCC 58.927 45.833 3.20 0.00 0.00 3.85
1248 17779 3.886123 CTTTCAAGATAATCCCGGTGGT 58.114 45.455 0.00 0.00 0.00 4.16
1528 18059 2.843730 TCCCAAACTGCTGGCTTCTATA 59.156 45.455 0.00 0.00 34.88 1.31
1532 18063 4.702131 CCAAACTGCTGGCTTCTATAACTT 59.298 41.667 0.00 0.00 0.00 2.66
1534 18065 5.428184 AACTGCTGGCTTCTATAACTTCT 57.572 39.130 0.00 0.00 0.00 2.85
1551 18085 3.387050 ACTTCTACGGTGAGTTCCAAACT 59.613 43.478 0.00 0.00 46.38 2.66
1552 18086 3.380479 TCTACGGTGAGTTCCAAACTG 57.620 47.619 0.00 0.00 43.03 3.16
1567 18101 3.876914 CCAAACTGTTGTACTCAGAAGCA 59.123 43.478 19.74 0.00 36.81 3.91
1569 18103 4.408182 AACTGTTGTACTCAGAAGCAGT 57.592 40.909 19.74 9.03 37.32 4.40
1570 18104 3.722147 ACTGTTGTACTCAGAAGCAGTG 58.278 45.455 19.74 0.00 34.87 3.66
1574 18108 3.013276 TGTACTCAGAAGCAGTGAACG 57.987 47.619 0.00 0.00 0.00 3.95
1576 18110 2.890808 ACTCAGAAGCAGTGAACGAA 57.109 45.000 0.00 0.00 0.00 3.85
1581 18115 3.742882 TCAGAAGCAGTGAACGAATTCAG 59.257 43.478 6.22 1.11 45.58 3.02
1609 18143 5.073554 TGGGTGGACTATGATAGCAAATCAT 59.926 40.000 16.10 16.10 41.25 2.45
1614 18148 7.661437 GTGGACTATGATAGCAAATCATACCAA 59.339 37.037 20.94 9.37 38.13 3.67
1639 18173 5.001232 TGAATGTTACCTTAGCACCTTGTC 58.999 41.667 0.00 0.00 0.00 3.18
1640 18174 4.634012 ATGTTACCTTAGCACCTTGTCA 57.366 40.909 0.00 0.00 0.00 3.58
1642 18176 4.980573 TGTTACCTTAGCACCTTGTCATT 58.019 39.130 0.00 0.00 0.00 2.57
1643 18177 5.001232 TGTTACCTTAGCACCTTGTCATTC 58.999 41.667 0.00 0.00 0.00 2.67
1646 18180 3.074538 ACCTTAGCACCTTGTCATTCCTT 59.925 43.478 0.00 0.00 0.00 3.36
1647 18181 4.082125 CCTTAGCACCTTGTCATTCCTTT 58.918 43.478 0.00 0.00 0.00 3.11
1648 18182 5.222048 ACCTTAGCACCTTGTCATTCCTTTA 60.222 40.000 0.00 0.00 0.00 1.85
1649 18183 5.888161 CCTTAGCACCTTGTCATTCCTTTAT 59.112 40.000 0.00 0.00 0.00 1.40
1687 18221 1.202639 TGCTGTCGACCACTGTCAATT 60.203 47.619 14.12 0.00 41.85 2.32
1802 18336 1.639635 AAGCTAGATGGGGTGGCTGG 61.640 60.000 0.00 0.00 33.30 4.85
1832 18366 4.654262 TGACTACTCTGTTCTCCCTTTTGT 59.346 41.667 0.00 0.00 0.00 2.83
1873 18407 1.253100 TCGGGCCAAATTCCAACTTC 58.747 50.000 4.39 0.00 0.00 3.01
1877 18411 1.276138 GGCCAAATTCCAACTTCCCAG 59.724 52.381 0.00 0.00 0.00 4.45
1905 18439 2.418368 ACATTTTAGGAGCGCCATCA 57.582 45.000 9.88 0.00 36.29 3.07
1923 18457 3.070476 TCAATTGTGCCAGCAGTCATA 57.930 42.857 5.13 0.00 0.00 2.15
1924 18458 3.623703 TCAATTGTGCCAGCAGTCATAT 58.376 40.909 5.13 0.00 0.00 1.78
1955 18489 1.269257 TGCTATTCTGATCTGTCGGCG 60.269 52.381 0.00 0.00 0.00 6.46
1956 18490 1.413382 CTATTCTGATCTGTCGGCGC 58.587 55.000 0.00 0.00 0.00 6.53
1997 18531 4.344679 AGATGATGAGTGGGAGATCAAGTC 59.655 45.833 0.00 0.00 30.14 3.01
2005 18539 2.293118 TGGGAGATCAAGTCTGGGATGA 60.293 50.000 0.00 0.00 37.29 2.92
2006 18540 2.978278 GGGAGATCAAGTCTGGGATGAT 59.022 50.000 0.00 0.00 37.29 2.45
2016 18550 2.932614 GTCTGGGATGATGTCTTTCACG 59.067 50.000 0.00 0.00 0.00 4.35
2034 18568 3.254166 TCACGTACAAGGAACTAGTGACC 59.746 47.826 10.33 10.33 38.49 4.02
2057 18591 3.708195 CCGAAGGCTTCAGCAATTG 57.292 52.632 25.66 0.00 46.14 2.32
2058 18592 0.457337 CCGAAGGCTTCAGCAATTGC 60.457 55.000 25.66 23.05 46.14 3.56
2060 18594 1.706443 GAAGGCTTCAGCAATTGCAC 58.294 50.000 30.89 14.57 45.16 4.57
2061 18595 0.319405 AAGGCTTCAGCAATTGCACC 59.681 50.000 30.89 21.73 45.16 5.01
2106 18640 0.608308 GGGTGTACAAAGGGGTGCTC 60.608 60.000 0.00 0.00 0.00 4.26
2145 18679 3.499737 GCCATCAAGCGGGTGTCG 61.500 66.667 0.00 0.00 42.76 4.35
2381 18915 3.837578 CGTAGCTTCCGGCCTCTA 58.162 61.111 0.00 0.00 43.05 2.43
2532 19066 0.403655 ATGCCCACACCACACATGTA 59.596 50.000 0.00 0.00 0.00 2.29
2764 19301 4.437239 CCTGAGCTGAAAGATTACGACAT 58.563 43.478 0.00 0.00 34.07 3.06
2795 19332 2.334307 GCTTGTGCTGAAGCTTGGA 58.666 52.632 2.10 0.00 44.26 3.53
2821 19358 1.377202 GCTCCCATTCGCTGTCCAA 60.377 57.895 0.00 0.00 0.00 3.53
2999 19536 6.127054 TGTCTGGAAGGTGATACTTCTATTGG 60.127 42.308 5.99 0.00 44.82 3.16
3043 19596 9.364989 GCAAGCTTATCACCAATGTTTATTTTA 57.635 29.630 0.00 0.00 0.00 1.52
3098 19726 4.887190 GGGCCGGTGTGGTGTGTT 62.887 66.667 1.90 0.00 41.21 3.32
3101 19729 2.515991 CCGGTGTGGTGTGTTGCT 60.516 61.111 0.00 0.00 0.00 3.91
3102 19730 2.715005 CGGTGTGGTGTGTTGCTG 59.285 61.111 0.00 0.00 0.00 4.41
3103 19731 1.817520 CGGTGTGGTGTGTTGCTGA 60.818 57.895 0.00 0.00 0.00 4.26
3104 19732 1.165907 CGGTGTGGTGTGTTGCTGAT 61.166 55.000 0.00 0.00 0.00 2.90
3105 19733 0.311790 GGTGTGGTGTGTTGCTGATG 59.688 55.000 0.00 0.00 0.00 3.07
3106 19734 1.024271 GTGTGGTGTGTTGCTGATGT 58.976 50.000 0.00 0.00 0.00 3.06
3107 19735 1.405105 GTGTGGTGTGTTGCTGATGTT 59.595 47.619 0.00 0.00 0.00 2.71
3108 19736 2.098614 TGTGGTGTGTTGCTGATGTTT 58.901 42.857 0.00 0.00 0.00 2.83
3109 19737 2.159268 TGTGGTGTGTTGCTGATGTTTG 60.159 45.455 0.00 0.00 0.00 2.93
3110 19738 2.098614 TGGTGTGTTGCTGATGTTTGT 58.901 42.857 0.00 0.00 0.00 2.83
3111 19739 3.066064 GTGGTGTGTTGCTGATGTTTGTA 59.934 43.478 0.00 0.00 0.00 2.41
3112 19740 3.696548 TGGTGTGTTGCTGATGTTTGTAA 59.303 39.130 0.00 0.00 0.00 2.41
3113 19741 4.202000 TGGTGTGTTGCTGATGTTTGTAAG 60.202 41.667 0.00 0.00 0.00 2.34
3114 19742 3.730715 GTGTGTTGCTGATGTTTGTAAGC 59.269 43.478 0.00 0.00 36.18 3.09
3115 19743 3.379688 TGTGTTGCTGATGTTTGTAAGCA 59.620 39.130 0.00 0.00 43.60 3.91
3116 19744 4.037803 TGTGTTGCTGATGTTTGTAAGCAT 59.962 37.500 0.00 0.00 44.58 3.79
3117 19745 4.383649 GTGTTGCTGATGTTTGTAAGCATG 59.616 41.667 0.00 0.00 44.58 4.06
3118 19746 4.037803 TGTTGCTGATGTTTGTAAGCATGT 59.962 37.500 0.00 0.00 44.58 3.21
3119 19747 5.240403 TGTTGCTGATGTTTGTAAGCATGTA 59.760 36.000 0.00 0.00 44.58 2.29
3120 19748 5.295431 TGCTGATGTTTGTAAGCATGTAC 57.705 39.130 0.00 0.00 40.59 2.90
3121 19749 5.003160 TGCTGATGTTTGTAAGCATGTACT 58.997 37.500 0.00 0.00 40.59 2.73
3122 19750 5.122239 TGCTGATGTTTGTAAGCATGTACTC 59.878 40.000 0.00 0.00 40.59 2.59
3123 19751 5.447818 GCTGATGTTTGTAAGCATGTACTCC 60.448 44.000 0.00 0.00 35.69 3.85
3124 19752 4.941263 TGATGTTTGTAAGCATGTACTCCC 59.059 41.667 0.00 0.00 29.57 4.30
3125 19753 4.634012 TGTTTGTAAGCATGTACTCCCT 57.366 40.909 0.00 0.00 0.00 4.20
3126 19754 4.575885 TGTTTGTAAGCATGTACTCCCTC 58.424 43.478 0.00 0.00 0.00 4.30
3127 19755 3.906720 TTGTAAGCATGTACTCCCTCC 57.093 47.619 0.00 0.00 0.00 4.30
3128 19756 1.754803 TGTAAGCATGTACTCCCTCCG 59.245 52.381 0.00 0.00 0.00 4.63
3129 19757 1.755380 GTAAGCATGTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
3130 19758 1.276622 AAGCATGTACTCCCTCCGTT 58.723 50.000 0.00 0.00 0.00 4.44
3131 19759 0.824759 AGCATGTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
3132 19760 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
3133 19761 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
3134 19762 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
3135 19763 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3136 19764 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3137 19765 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3138 19766 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3139 19767 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3140 19768 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3141 19769 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
3142 19770 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3143 19771 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
3144 19772 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
3145 19773 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
3146 19774 5.221864 CCCTCCGTTCCTAAATATAAGCCTT 60.222 44.000 0.00 0.00 0.00 4.35
3147 19775 6.296803 CCTCCGTTCCTAAATATAAGCCTTT 58.703 40.000 0.00 0.00 0.00 3.11
3148 19776 6.204882 CCTCCGTTCCTAAATATAAGCCTTTG 59.795 42.308 0.00 0.00 0.00 2.77
3149 19777 6.655930 TCCGTTCCTAAATATAAGCCTTTGT 58.344 36.000 0.00 0.00 0.00 2.83
3150 19778 7.794041 TCCGTTCCTAAATATAAGCCTTTGTA 58.206 34.615 0.00 0.00 0.00 2.41
3151 19779 7.929785 TCCGTTCCTAAATATAAGCCTTTGTAG 59.070 37.037 0.00 0.00 0.00 2.74
3152 19780 7.929785 CCGTTCCTAAATATAAGCCTTTGTAGA 59.070 37.037 0.00 0.00 0.00 2.59
3153 19781 8.979574 CGTTCCTAAATATAAGCCTTTGTAGAG 58.020 37.037 0.00 0.00 0.00 2.43
3160 19788 8.910351 AATATAAGCCTTTGTAGAGATTCCAC 57.090 34.615 0.00 0.00 0.00 4.02
3161 19789 4.917906 AAGCCTTTGTAGAGATTCCACT 57.082 40.909 0.00 0.00 0.00 4.00
3162 19790 7.676683 ATAAGCCTTTGTAGAGATTCCACTA 57.323 36.000 0.00 0.00 0.00 2.74
3163 19791 5.606348 AGCCTTTGTAGAGATTCCACTAG 57.394 43.478 0.00 0.00 0.00 2.57
3164 19792 5.273208 AGCCTTTGTAGAGATTCCACTAGA 58.727 41.667 0.00 0.00 0.00 2.43
3165 19793 5.902431 AGCCTTTGTAGAGATTCCACTAGAT 59.098 40.000 0.00 0.00 0.00 1.98
3166 19794 7.069986 AGCCTTTGTAGAGATTCCACTAGATA 58.930 38.462 0.00 0.00 0.00 1.98
3167 19795 7.232534 AGCCTTTGTAGAGATTCCACTAGATAG 59.767 40.741 0.00 0.00 0.00 2.08
3168 19796 7.231722 GCCTTTGTAGAGATTCCACTAGATAGA 59.768 40.741 0.00 0.00 0.00 1.98
3169 19797 8.573035 CCTTTGTAGAGATTCCACTAGATAGAC 58.427 40.741 0.00 0.00 0.00 2.59
3170 19798 9.349713 CTTTGTAGAGATTCCACTAGATAGACT 57.650 37.037 0.00 0.00 0.00 3.24
3172 19800 9.781633 TTGTAGAGATTCCACTAGATAGACTAC 57.218 37.037 0.00 0.00 0.00 2.73
3173 19801 8.935741 TGTAGAGATTCCACTAGATAGACTACA 58.064 37.037 0.00 0.00 34.91 2.74
3174 19802 9.953565 GTAGAGATTCCACTAGATAGACTACAT 57.046 37.037 0.00 0.00 0.00 2.29
3176 19804 9.953565 AGAGATTCCACTAGATAGACTACATAC 57.046 37.037 0.00 0.00 0.00 2.39
3177 19805 8.780846 AGATTCCACTAGATAGACTACATACG 57.219 38.462 0.00 0.00 0.00 3.06
3178 19806 7.825270 AGATTCCACTAGATAGACTACATACGG 59.175 40.741 0.00 0.00 0.00 4.02
3179 19807 6.676990 TCCACTAGATAGACTACATACGGA 57.323 41.667 0.00 0.00 0.00 4.69
3180 19808 6.699366 TCCACTAGATAGACTACATACGGAG 58.301 44.000 0.00 0.00 0.00 4.63
3181 19809 5.352016 CCACTAGATAGACTACATACGGAGC 59.648 48.000 0.00 0.00 0.00 4.70
3182 19810 5.932883 CACTAGATAGACTACATACGGAGCA 59.067 44.000 0.00 0.00 0.00 4.26
3183 19811 6.427242 CACTAGATAGACTACATACGGAGCAA 59.573 42.308 0.00 0.00 0.00 3.91
3184 19812 6.996879 ACTAGATAGACTACATACGGAGCAAA 59.003 38.462 0.00 0.00 0.00 3.68
3185 19813 6.710597 AGATAGACTACATACGGAGCAAAA 57.289 37.500 0.00 0.00 0.00 2.44
3186 19814 7.291411 AGATAGACTACATACGGAGCAAAAT 57.709 36.000 0.00 0.00 0.00 1.82
3187 19815 7.148641 AGATAGACTACATACGGAGCAAAATG 58.851 38.462 0.00 0.00 0.00 2.32
3188 19816 4.442706 AGACTACATACGGAGCAAAATGG 58.557 43.478 0.00 0.00 0.00 3.16
3189 19817 4.161565 AGACTACATACGGAGCAAAATGGA 59.838 41.667 0.00 0.00 0.00 3.41
3190 19818 5.036117 ACTACATACGGAGCAAAATGGAT 57.964 39.130 0.00 0.00 0.00 3.41
3191 19819 4.816385 ACTACATACGGAGCAAAATGGATG 59.184 41.667 0.00 0.00 0.00 3.51
3192 19820 3.884895 ACATACGGAGCAAAATGGATGA 58.115 40.909 0.00 0.00 0.00 2.92
3193 19821 4.269183 ACATACGGAGCAAAATGGATGAA 58.731 39.130 0.00 0.00 0.00 2.57
3194 19822 4.889409 ACATACGGAGCAAAATGGATGAAT 59.111 37.500 0.00 0.00 0.00 2.57
3195 19823 5.009010 ACATACGGAGCAAAATGGATGAATC 59.991 40.000 0.00 0.00 0.00 2.52
3196 19824 3.624777 ACGGAGCAAAATGGATGAATCT 58.375 40.909 0.00 0.00 0.00 2.40
3197 19825 4.780815 ACGGAGCAAAATGGATGAATCTA 58.219 39.130 0.00 0.00 0.00 1.98
3198 19826 4.576463 ACGGAGCAAAATGGATGAATCTAC 59.424 41.667 0.00 0.00 0.00 2.59
3199 19827 4.576053 CGGAGCAAAATGGATGAATCTACA 59.424 41.667 0.00 0.00 0.00 2.74
3200 19828 5.504665 CGGAGCAAAATGGATGAATCTACAC 60.505 44.000 0.00 0.00 0.00 2.90
3201 19829 5.591877 GGAGCAAAATGGATGAATCTACACT 59.408 40.000 0.00 0.00 0.00 3.55
3202 19830 6.096001 GGAGCAAAATGGATGAATCTACACTT 59.904 38.462 0.00 0.00 0.00 3.16
3203 19831 7.093322 AGCAAAATGGATGAATCTACACTTC 57.907 36.000 0.00 0.00 0.00 3.01
3204 19832 6.660521 AGCAAAATGGATGAATCTACACTTCA 59.339 34.615 0.00 0.00 37.06 3.02
3205 19833 7.177216 AGCAAAATGGATGAATCTACACTTCAA 59.823 33.333 0.00 0.00 36.30 2.69
3206 19834 7.814107 GCAAAATGGATGAATCTACACTTCAAA 59.186 33.333 0.00 0.00 36.30 2.69
3207 19835 9.865321 CAAAATGGATGAATCTACACTTCAAAT 57.135 29.630 0.00 0.00 36.30 2.32
3208 19836 9.865321 AAAATGGATGAATCTACACTTCAAATG 57.135 29.630 0.00 0.00 36.30 2.32
3209 19837 6.441093 TGGATGAATCTACACTTCAAATGC 57.559 37.500 0.00 0.00 36.30 3.56
3210 19838 5.945191 TGGATGAATCTACACTTCAAATGCA 59.055 36.000 0.00 0.00 36.30 3.96
3211 19839 6.604396 TGGATGAATCTACACTTCAAATGCAT 59.396 34.615 0.00 0.00 36.30 3.96
3212 19840 7.137426 GGATGAATCTACACTTCAAATGCATC 58.863 38.462 0.00 0.00 36.30 3.91
3213 19841 7.013083 GGATGAATCTACACTTCAAATGCATCT 59.987 37.037 0.00 0.00 36.30 2.90
3214 19842 8.969260 ATGAATCTACACTTCAAATGCATCTA 57.031 30.769 0.00 0.00 36.30 1.98
3215 19843 8.969260 TGAATCTACACTTCAAATGCATCTAT 57.031 30.769 0.00 0.00 29.96 1.98
3223 19851 9.224267 ACACTTCAAATGCATCTATATACATCC 57.776 33.333 0.00 0.00 0.00 3.51
3224 19852 8.385858 CACTTCAAATGCATCTATATACATCCG 58.614 37.037 0.00 0.00 0.00 4.18
3225 19853 8.097038 ACTTCAAATGCATCTATATACATCCGT 58.903 33.333 0.00 0.00 0.00 4.69
3226 19854 9.586435 CTTCAAATGCATCTATATACATCCGTA 57.414 33.333 0.00 0.00 0.00 4.02
3228 19856 9.533253 TCAAATGCATCTATATACATCCGTATG 57.467 33.333 0.00 0.00 38.79 2.39
3230 19858 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
3231 19859 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
3232 19860 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
3233 19861 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
3234 19862 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
3235 19863 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
3236 19864 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
3237 19865 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
3238 19866 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
3239 19867 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
3240 19868 7.770366 ATACATCCGTATGTGGTTCATAGTA 57.230 36.000 3.56 0.00 45.99 1.82
3241 19869 6.085555 ACATCCGTATGTGGTTCATAGTAG 57.914 41.667 0.00 0.00 44.79 2.57
3242 19870 5.831525 ACATCCGTATGTGGTTCATAGTAGA 59.168 40.000 0.00 0.00 44.79 2.59
3243 19871 6.322969 ACATCCGTATGTGGTTCATAGTAGAA 59.677 38.462 0.00 0.00 44.79 2.10
3244 19872 6.971726 TCCGTATGTGGTTCATAGTAGAAT 57.028 37.500 0.00 0.00 39.36 2.40
3245 19873 6.978338 TCCGTATGTGGTTCATAGTAGAATC 58.022 40.000 0.00 0.00 39.36 2.52
3246 19874 6.776116 TCCGTATGTGGTTCATAGTAGAATCT 59.224 38.462 0.00 0.00 39.36 2.40
3247 19875 7.040617 TCCGTATGTGGTTCATAGTAGAATCTC 60.041 40.741 0.00 0.00 39.36 2.75
3248 19876 7.040340 CCGTATGTGGTTCATAGTAGAATCTCT 60.040 40.741 0.00 0.00 39.36 3.10
3249 19877 9.000486 CGTATGTGGTTCATAGTAGAATCTCTA 58.000 37.037 0.00 0.00 39.36 2.43
3251 19879 9.862149 TATGTGGTTCATAGTAGAATCTCTACA 57.138 33.333 14.55 3.46 42.75 2.74
3274 19902 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3275 19903 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3276 19904 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3277 19905 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3278 19906 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3279 19907 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3280 19908 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.00 0.00 3.51
3281 19909 1.272807 TTTAGGAACGGAGGGAGTGG 58.727 55.000 0.00 0.00 0.00 4.00
3282 19910 0.115745 TTAGGAACGGAGGGAGTGGT 59.884 55.000 0.00 0.00 0.00 4.16
3283 19911 1.002069 TAGGAACGGAGGGAGTGGTA 58.998 55.000 0.00 0.00 0.00 3.25
3284 19912 0.324460 AGGAACGGAGGGAGTGGTAG 60.324 60.000 0.00 0.00 0.00 3.18
3285 19913 1.328430 GGAACGGAGGGAGTGGTAGG 61.328 65.000 0.00 0.00 0.00 3.18
3286 19914 1.305887 AACGGAGGGAGTGGTAGGG 60.306 63.158 0.00 0.00 0.00 3.53
3287 19915 2.103079 AACGGAGGGAGTGGTAGGGT 62.103 60.000 0.00 0.00 0.00 4.34
3288 19916 2.058595 CGGAGGGAGTGGTAGGGTG 61.059 68.421 0.00 0.00 0.00 4.61
3289 19917 1.080538 GGAGGGAGTGGTAGGGTGT 59.919 63.158 0.00 0.00 0.00 4.16
3290 19918 0.976590 GGAGGGAGTGGTAGGGTGTC 60.977 65.000 0.00 0.00 0.00 3.67
3291 19919 0.252103 GAGGGAGTGGTAGGGTGTCA 60.252 60.000 0.00 0.00 0.00 3.58
3292 19920 0.192566 AGGGAGTGGTAGGGTGTCAA 59.807 55.000 0.00 0.00 0.00 3.18
3293 19921 0.323957 GGGAGTGGTAGGGTGTCAAC 59.676 60.000 0.00 0.00 0.00 3.18
3294 19922 1.349067 GGAGTGGTAGGGTGTCAACT 58.651 55.000 0.00 0.00 0.00 3.16
3295 19923 2.532843 GGAGTGGTAGGGTGTCAACTA 58.467 52.381 0.00 0.00 0.00 2.24
3296 19924 2.496470 GGAGTGGTAGGGTGTCAACTAG 59.504 54.545 0.00 0.00 0.00 2.57
3297 19925 2.496470 GAGTGGTAGGGTGTCAACTAGG 59.504 54.545 0.00 0.00 0.00 3.02
3298 19926 1.553704 GTGGTAGGGTGTCAACTAGGG 59.446 57.143 0.00 0.00 0.00 3.53
3299 19927 1.150560 TGGTAGGGTGTCAACTAGGGT 59.849 52.381 0.00 0.00 0.00 4.34
3300 19928 2.263545 GGTAGGGTGTCAACTAGGGTT 58.736 52.381 0.00 0.00 35.86 4.11
3312 19940 2.616524 ACTAGGGTTGCTTGAGTGGTA 58.383 47.619 0.00 0.00 0.00 3.25
3314 19942 1.729586 AGGGTTGCTTGAGTGGTAGA 58.270 50.000 0.00 0.00 0.00 2.59
3316 19944 1.348036 GGGTTGCTTGAGTGGTAGAGT 59.652 52.381 0.00 0.00 0.00 3.24
3326 19954 1.534476 TGGTAGAGTCGTTGGGGCA 60.534 57.895 0.00 0.00 0.00 5.36
3358 19993 1.743995 GGCGTGGGCTCGTTGTATT 60.744 57.895 4.87 0.00 39.81 1.89
3369 20004 2.482721 CTCGTTGTATTGGTTTTCGGCT 59.517 45.455 0.00 0.00 0.00 5.52
3376 20011 0.747852 TTGGTTTTCGGCTGGTTTCC 59.252 50.000 0.00 0.00 0.00 3.13
3384 20019 1.102978 CGGCTGGTTTCCCTTATTGG 58.897 55.000 0.00 0.00 0.00 3.16
3395 20030 6.179756 GTTTCCCTTATTGGCCAATCAATTT 58.820 36.000 33.89 13.39 38.24 1.82
3447 20092 6.153680 TCCTGCTGGTTACTCAAAAAGAAAAA 59.846 34.615 9.73 0.00 34.23 1.94
3520 20165 2.413371 GCCGAAAAGCTCTAGTTGCAAG 60.413 50.000 0.00 0.00 0.00 4.01
3565 20211 3.179048 GTTGGCACACTCAGAAACAAAC 58.821 45.455 0.00 0.00 39.29 2.93
3572 20218 4.336433 CACACTCAGAAACAAACTGGACAT 59.664 41.667 0.00 0.00 36.22 3.06
3574 20220 5.066505 ACACTCAGAAACAAACTGGACATTC 59.933 40.000 0.00 0.00 36.22 2.67
3586 20232 7.094075 ACAAACTGGACATTCGTAGTACTGATA 60.094 37.037 5.39 0.00 0.00 2.15
3589 20235 7.426410 ACTGGACATTCGTAGTACTGATAATG 58.574 38.462 17.48 17.48 0.00 1.90
3590 20236 7.068348 ACTGGACATTCGTAGTACTGATAATGT 59.932 37.037 21.65 21.65 39.53 2.71
3591 20237 7.423199 TGGACATTCGTAGTACTGATAATGTC 58.577 38.462 28.89 28.89 46.28 3.06
3611 20259 7.704789 ATGTCAGATTTGCAGTTTCTTTTTC 57.295 32.000 0.00 0.00 0.00 2.29
3619 20267 3.766591 TGCAGTTTCTTTTTCCACCAGAA 59.233 39.130 0.00 0.00 0.00 3.02
3620 20268 4.221703 TGCAGTTTCTTTTTCCACCAGAAA 59.778 37.500 0.00 0.00 42.82 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.339644 TAACCATACCACCGGCTCCC 61.340 60.000 0.00 0.00 0.00 4.30
73 74 2.164624 GAGCTCACCTACATCAACGACT 59.835 50.000 9.40 0.00 0.00 4.18
87 6732 4.111375 TCTCCTTTACAATCGAGCTCAC 57.889 45.455 15.40 0.00 0.00 3.51
105 6750 2.939103 CCAATTCAGGTGACCGATTCTC 59.061 50.000 0.00 0.00 0.00 2.87
111 6756 0.036010 AGCTCCAATTCAGGTGACCG 60.036 55.000 0.00 0.00 0.00 4.79
141 6786 0.524862 CAGCTGGGTTTCAGTGATGC 59.475 55.000 5.57 0.00 45.08 3.91
147 6792 2.677875 GGGCCAGCTGGGTTTCAG 60.678 66.667 33.46 7.22 46.03 3.02
239 6884 1.623811 GACACTACAGAAAGCCCCTCA 59.376 52.381 0.00 0.00 0.00 3.86
251 6896 2.632512 TGCCATCAACTCTGACACTACA 59.367 45.455 0.00 0.00 33.30 2.74
254 6899 2.880890 GTTTGCCATCAACTCTGACACT 59.119 45.455 0.00 0.00 33.30 3.55
308 6953 1.745653 GATTTCAGTAGCAACCCCAGC 59.254 52.381 0.00 0.00 0.00 4.85
313 6958 2.755103 CCCCTTGATTTCAGTAGCAACC 59.245 50.000 0.00 0.00 0.00 3.77
329 6974 0.329596 CTTTCTACAGCAGGCCCCTT 59.670 55.000 0.00 0.00 0.00 3.95
453 7098 1.571460 CCAGCAGCGACAAACTCAC 59.429 57.895 0.00 0.00 0.00 3.51
480 7125 6.656632 TGTTGTTAACCTCCATGCATTTAA 57.343 33.333 0.00 0.00 0.00 1.52
514 7159 0.178935 CCATCTCCTCCTCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
515 7160 0.560688 ACCATCTCCTCCTCCTCCTC 59.439 60.000 0.00 0.00 0.00 3.71
516 7161 1.022903 AACCATCTCCTCCTCCTCCT 58.977 55.000 0.00 0.00 0.00 3.69
517 7162 2.321719 GTAACCATCTCCTCCTCCTCC 58.678 57.143 0.00 0.00 0.00 4.30
518 7163 2.321719 GGTAACCATCTCCTCCTCCTC 58.678 57.143 0.00 0.00 0.00 3.71
519 7164 2.480642 GGTAACCATCTCCTCCTCCT 57.519 55.000 0.00 0.00 0.00 3.69
550 7195 4.887748 ACTTCAGTGTCCATGTAACTCAG 58.112 43.478 0.00 0.00 0.00 3.35
561 7206 3.134458 GCAGGCATATACTTCAGTGTCC 58.866 50.000 0.00 0.00 0.00 4.02
626 7271 8.194104 TCTAGTCTTCTGTTATCTTGAGCATTC 58.806 37.037 0.00 0.00 0.00 2.67
707 16442 1.303236 CCCCATCCAAGACGCAACA 60.303 57.895 0.00 0.00 0.00 3.33
749 16728 2.872858 GAGTCTGGGTTTCACTGTCAAC 59.127 50.000 0.00 0.00 0.00 3.18
776 16765 4.142752 CGACGACTTGAAGTATAGGTGACA 60.143 45.833 0.00 0.00 0.00 3.58
780 16769 2.686915 CCCGACGACTTGAAGTATAGGT 59.313 50.000 0.00 0.00 0.00 3.08
891 16915 8.671921 CAAAATCTGTGCTAGAGTAAACATGAT 58.328 33.333 0.00 0.00 39.20 2.45
892 16916 7.361201 GCAAAATCTGTGCTAGAGTAAACATGA 60.361 37.037 0.00 0.00 39.20 3.07
895 16919 5.762711 TGCAAAATCTGTGCTAGAGTAAACA 59.237 36.000 0.00 0.00 42.69 2.83
896 16920 6.073003 AGTGCAAAATCTGTGCTAGAGTAAAC 60.073 38.462 0.00 0.00 42.69 2.01
897 16921 5.997746 AGTGCAAAATCTGTGCTAGAGTAAA 59.002 36.000 0.00 0.00 42.69 2.01
898 16922 5.551233 AGTGCAAAATCTGTGCTAGAGTAA 58.449 37.500 0.00 0.00 42.69 2.24
899 16923 5.152623 AGTGCAAAATCTGTGCTAGAGTA 57.847 39.130 0.00 0.00 42.69 2.59
900 16924 4.013267 AGTGCAAAATCTGTGCTAGAGT 57.987 40.909 0.00 0.00 42.69 3.24
901 16925 7.959689 ATATAGTGCAAAATCTGTGCTAGAG 57.040 36.000 0.00 0.00 42.69 2.43
982 17046 5.453567 AACATTCTGCCAAAGAGGTAAAC 57.546 39.130 0.00 0.00 40.61 2.01
1009 17073 0.910088 AGGTAGGGGTGCCAAGAGAC 60.910 60.000 0.00 0.00 0.00 3.36
1019 17083 0.042881 GAGAACAGGGAGGTAGGGGT 59.957 60.000 0.00 0.00 0.00 4.95
1171 17702 0.970427 CCACCTGGGCCATTGGTTAC 60.970 60.000 21.21 0.00 30.72 2.50
1215 17746 8.332487 GGATTATCTTGAAAGCTTAGGGGATAT 58.668 37.037 0.00 0.00 0.00 1.63
1242 17773 0.757188 AGGAGGAGATAGCACCACCG 60.757 60.000 5.37 0.00 39.75 4.94
1248 17779 3.987745 AGTTGAGAAGGAGGAGATAGCA 58.012 45.455 0.00 0.00 0.00 3.49
1528 18059 4.124970 GTTTGGAACTCACCGTAGAAGTT 58.875 43.478 0.00 0.00 0.00 2.66
1532 18063 2.696707 ACAGTTTGGAACTCACCGTAGA 59.303 45.455 0.00 0.00 40.46 2.59
1534 18065 3.199677 CAACAGTTTGGAACTCACCGTA 58.800 45.455 0.00 0.00 40.46 4.02
1551 18085 4.119862 GTTCACTGCTTCTGAGTACAACA 58.880 43.478 0.00 0.00 0.00 3.33
1552 18086 3.182572 CGTTCACTGCTTCTGAGTACAAC 59.817 47.826 0.00 0.00 0.00 3.32
1567 18101 1.148310 CACGCCTGAATTCGTTCACT 58.852 50.000 0.04 0.00 36.73 3.41
1569 18103 0.953471 CCCACGCCTGAATTCGTTCA 60.953 55.000 0.04 0.00 36.73 3.18
1570 18104 0.953960 ACCCACGCCTGAATTCGTTC 60.954 55.000 0.04 0.00 36.73 3.95
1574 18108 1.002624 TCCACCCACGCCTGAATTC 60.003 57.895 0.00 0.00 0.00 2.17
1576 18110 0.907704 TAGTCCACCCACGCCTGAAT 60.908 55.000 0.00 0.00 0.00 2.57
1581 18115 1.000955 CTATCATAGTCCACCCACGCC 59.999 57.143 0.00 0.00 0.00 5.68
1609 18143 5.935789 GTGCTAAGGTAACATTCAGTTGGTA 59.064 40.000 0.00 0.00 41.50 3.25
1614 18148 4.910458 AGGTGCTAAGGTAACATTCAGT 57.090 40.909 0.00 0.00 41.41 3.41
1639 18173 7.327975 GGAAGTTGGGGTTTAATAAAGGAATG 58.672 38.462 0.00 0.00 0.00 2.67
1640 18174 6.153851 CGGAAGTTGGGGTTTAATAAAGGAAT 59.846 38.462 0.00 0.00 0.00 3.01
1642 18176 5.011586 CGGAAGTTGGGGTTTAATAAAGGA 58.988 41.667 0.00 0.00 0.00 3.36
1643 18177 4.768448 ACGGAAGTTGGGGTTTAATAAAGG 59.232 41.667 0.00 0.00 46.40 3.11
1687 18221 4.104102 ACCCAGTGACAACAAAGAGGATAA 59.896 41.667 0.00 0.00 0.00 1.75
1802 18336 4.321378 GGAGAACAGAGTAGTCAAGTGGTC 60.321 50.000 0.00 0.00 0.00 4.02
1856 18390 0.613260 GGGAAGTTGGAATTTGGCCC 59.387 55.000 0.00 0.00 0.00 5.80
1858 18392 1.338105 GCTGGGAAGTTGGAATTTGGC 60.338 52.381 0.00 0.00 0.00 4.52
1873 18407 5.139727 TCCTAAAATGTTCATATGGCTGGG 58.860 41.667 2.13 0.00 0.00 4.45
1877 18411 4.787598 CGCTCCTAAAATGTTCATATGGC 58.212 43.478 2.13 0.00 0.00 4.40
1905 18439 6.720112 ATTAATATGACTGCTGGCACAATT 57.280 33.333 0.00 7.62 38.70 2.32
1997 18531 2.977914 ACGTGAAAGACATCATCCCAG 58.022 47.619 0.00 0.00 0.00 4.45
2005 18539 4.957296 AGTTCCTTGTACGTGAAAGACAT 58.043 39.130 12.22 0.00 0.00 3.06
2006 18540 4.395959 AGTTCCTTGTACGTGAAAGACA 57.604 40.909 12.22 0.00 0.00 3.41
2016 18550 2.603953 GCGGTCACTAGTTCCTTGTAC 58.396 52.381 10.84 0.00 0.00 2.90
2061 18595 3.090532 CCCCCTTTCCCGAGGAGG 61.091 72.222 0.00 0.00 39.25 4.30
2106 18640 0.677731 CATGCTGTGTGGTGGTAGGG 60.678 60.000 0.00 0.00 0.00 3.53
2127 18661 3.134127 GACACCCGCTTGATGGCC 61.134 66.667 0.00 0.00 0.00 5.36
2145 18679 2.418083 CCCCTGCTTTGATTCCGGC 61.418 63.158 0.00 0.00 0.00 6.13
2381 18915 0.537188 CCAATCCTCGTGCAGGTAGT 59.463 55.000 6.26 0.00 43.95 2.73
2505 19039 2.662596 GTGTGGGCATCGACTCCA 59.337 61.111 7.05 3.49 0.00 3.86
2532 19066 2.042762 TATCCCCAGGTGCCTGCT 59.957 61.111 12.54 0.45 42.35 4.24
2764 19301 0.179020 CACAAGCTCAACCTCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2795 19332 1.660560 GCGAATGGGAGCACAGCAAT 61.661 55.000 0.00 0.00 0.00 3.56
2821 19358 2.588877 GCATACATGGCCGCGACT 60.589 61.111 8.23 0.00 0.00 4.18
2999 19536 4.082895 GCTTGCATGATGATATGAACTCCC 60.083 45.833 3.33 0.00 0.00 4.30
3089 19717 2.159254 ACAAACATCAGCAACACACCAC 60.159 45.455 0.00 0.00 0.00 4.16
3090 19718 2.098614 ACAAACATCAGCAACACACCA 58.901 42.857 0.00 0.00 0.00 4.17
3091 19719 2.869233 ACAAACATCAGCAACACACC 57.131 45.000 0.00 0.00 0.00 4.16
3092 19720 3.730715 GCTTACAAACATCAGCAACACAC 59.269 43.478 0.00 0.00 32.17 3.82
3095 19723 4.037803 ACATGCTTACAAACATCAGCAACA 59.962 37.500 0.00 0.00 45.14 3.33
3098 19726 5.003160 AGTACATGCTTACAAACATCAGCA 58.997 37.500 0.00 0.00 46.02 4.41
3101 19729 4.941263 GGGAGTACATGCTTACAAACATCA 59.059 41.667 0.00 0.00 0.00 3.07
3102 19730 5.186198 AGGGAGTACATGCTTACAAACATC 58.814 41.667 0.00 0.00 0.00 3.06
3103 19731 5.179452 AGGGAGTACATGCTTACAAACAT 57.821 39.130 0.00 0.00 0.00 2.71
3104 19732 4.564821 GGAGGGAGTACATGCTTACAAACA 60.565 45.833 0.00 0.00 0.00 2.83
3105 19733 3.939592 GGAGGGAGTACATGCTTACAAAC 59.060 47.826 0.00 0.00 0.00 2.93
3106 19734 3.369052 CGGAGGGAGTACATGCTTACAAA 60.369 47.826 0.00 0.00 0.00 2.83
3107 19735 2.167693 CGGAGGGAGTACATGCTTACAA 59.832 50.000 0.00 0.00 0.00 2.41
3108 19736 1.754803 CGGAGGGAGTACATGCTTACA 59.245 52.381 0.00 0.00 0.00 2.41
3109 19737 1.755380 ACGGAGGGAGTACATGCTTAC 59.245 52.381 0.00 0.00 0.00 2.34
3110 19738 2.154567 ACGGAGGGAGTACATGCTTA 57.845 50.000 0.00 0.00 0.00 3.09
3111 19739 1.207329 GAACGGAGGGAGTACATGCTT 59.793 52.381 0.00 0.00 0.00 3.91
3112 19740 0.824759 GAACGGAGGGAGTACATGCT 59.175 55.000 0.00 0.00 0.00 3.79
3113 19741 0.179081 GGAACGGAGGGAGTACATGC 60.179 60.000 0.00 0.00 0.00 4.06
3114 19742 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
3115 19743 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
3116 19744 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
3117 19745 7.530426 TTATATTTAGGAACGGAGGGAGTAC 57.470 40.000 0.00 0.00 0.00 2.73
3118 19746 6.210185 GCTTATATTTAGGAACGGAGGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
3119 19747 5.011840 GCTTATATTTAGGAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
3120 19748 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
3121 19749 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
3122 19750 4.286291 AGGCTTATATTTAGGAACGGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
3123 19751 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
3124 19752 6.766467 ACAAAGGCTTATATTTAGGAACGGAG 59.234 38.462 0.00 0.00 0.00 4.63
3125 19753 6.655930 ACAAAGGCTTATATTTAGGAACGGA 58.344 36.000 0.00 0.00 0.00 4.69
3126 19754 6.937436 ACAAAGGCTTATATTTAGGAACGG 57.063 37.500 0.00 0.00 0.00 4.44
3127 19755 8.882415 TCTACAAAGGCTTATATTTAGGAACG 57.118 34.615 0.00 0.00 0.00 3.95
3134 19762 9.343539 GTGGAATCTCTACAAAGGCTTATATTT 57.656 33.333 0.00 0.00 0.00 1.40
3135 19763 8.718656 AGTGGAATCTCTACAAAGGCTTATATT 58.281 33.333 0.00 0.00 29.47 1.28
3136 19764 8.268878 AGTGGAATCTCTACAAAGGCTTATAT 57.731 34.615 0.00 0.00 29.47 0.86
3137 19765 7.676683 AGTGGAATCTCTACAAAGGCTTATA 57.323 36.000 0.00 0.00 29.47 0.98
3138 19766 6.567602 AGTGGAATCTCTACAAAGGCTTAT 57.432 37.500 0.00 0.00 29.47 1.73
3139 19767 6.895756 TCTAGTGGAATCTCTACAAAGGCTTA 59.104 38.462 0.00 0.00 29.47 3.09
3140 19768 4.917906 AGTGGAATCTCTACAAAGGCTT 57.082 40.909 0.00 0.00 29.47 4.35
3141 19769 5.273208 TCTAGTGGAATCTCTACAAAGGCT 58.727 41.667 0.00 0.00 29.47 4.58
3142 19770 5.599999 TCTAGTGGAATCTCTACAAAGGC 57.400 43.478 0.00 0.00 29.47 4.35
3143 19771 8.573035 GTCTATCTAGTGGAATCTCTACAAAGG 58.427 40.741 0.00 0.00 29.47 3.11
3144 19772 9.349713 AGTCTATCTAGTGGAATCTCTACAAAG 57.650 37.037 0.00 0.00 29.47 2.77
3146 19774 9.781633 GTAGTCTATCTAGTGGAATCTCTACAA 57.218 37.037 0.00 0.00 29.47 2.41
3147 19775 8.935741 TGTAGTCTATCTAGTGGAATCTCTACA 58.064 37.037 0.00 0.00 32.68 2.74
3148 19776 9.953565 ATGTAGTCTATCTAGTGGAATCTCTAC 57.046 37.037 0.00 0.00 0.00 2.59
3150 19778 9.953565 GTATGTAGTCTATCTAGTGGAATCTCT 57.046 37.037 0.00 0.00 0.00 3.10
3151 19779 8.875803 CGTATGTAGTCTATCTAGTGGAATCTC 58.124 40.741 0.00 0.00 0.00 2.75
3152 19780 7.825270 CCGTATGTAGTCTATCTAGTGGAATCT 59.175 40.741 0.00 0.00 0.00 2.40
3153 19781 7.823310 TCCGTATGTAGTCTATCTAGTGGAATC 59.177 40.741 0.00 0.00 0.00 2.52
3154 19782 7.687388 TCCGTATGTAGTCTATCTAGTGGAAT 58.313 38.462 0.00 0.00 0.00 3.01
3155 19783 7.071069 TCCGTATGTAGTCTATCTAGTGGAA 57.929 40.000 0.00 0.00 0.00 3.53
3156 19784 6.676990 TCCGTATGTAGTCTATCTAGTGGA 57.323 41.667 0.00 0.00 0.00 4.02
3157 19785 5.352016 GCTCCGTATGTAGTCTATCTAGTGG 59.648 48.000 0.00 0.00 0.00 4.00
3158 19786 5.932883 TGCTCCGTATGTAGTCTATCTAGTG 59.067 44.000 0.00 0.00 0.00 2.74
3159 19787 6.111669 TGCTCCGTATGTAGTCTATCTAGT 57.888 41.667 0.00 0.00 0.00 2.57
3160 19788 7.436430 TTTGCTCCGTATGTAGTCTATCTAG 57.564 40.000 0.00 0.00 0.00 2.43
3161 19789 7.812690 TTTTGCTCCGTATGTAGTCTATCTA 57.187 36.000 0.00 0.00 0.00 1.98
3162 19790 6.710597 TTTTGCTCCGTATGTAGTCTATCT 57.289 37.500 0.00 0.00 0.00 1.98
3163 19791 6.366332 CCATTTTGCTCCGTATGTAGTCTATC 59.634 42.308 0.00 0.00 0.00 2.08
3164 19792 6.041637 TCCATTTTGCTCCGTATGTAGTCTAT 59.958 38.462 0.00 0.00 0.00 1.98
3165 19793 5.361571 TCCATTTTGCTCCGTATGTAGTCTA 59.638 40.000 0.00 0.00 0.00 2.59
3166 19794 4.161565 TCCATTTTGCTCCGTATGTAGTCT 59.838 41.667 0.00 0.00 0.00 3.24
3167 19795 4.439057 TCCATTTTGCTCCGTATGTAGTC 58.561 43.478 0.00 0.00 0.00 2.59
3168 19796 4.481368 TCCATTTTGCTCCGTATGTAGT 57.519 40.909 0.00 0.00 0.00 2.73
3169 19797 5.056480 TCATCCATTTTGCTCCGTATGTAG 58.944 41.667 0.00 0.00 0.00 2.74
3170 19798 5.029807 TCATCCATTTTGCTCCGTATGTA 57.970 39.130 0.00 0.00 0.00 2.29
3171 19799 3.884895 TCATCCATTTTGCTCCGTATGT 58.115 40.909 0.00 0.00 0.00 2.29
3172 19800 4.898829 TTCATCCATTTTGCTCCGTATG 57.101 40.909 0.00 0.00 0.00 2.39
3173 19801 5.380043 AGATTCATCCATTTTGCTCCGTAT 58.620 37.500 0.00 0.00 0.00 3.06
3174 19802 4.780815 AGATTCATCCATTTTGCTCCGTA 58.219 39.130 0.00 0.00 0.00 4.02
3175 19803 3.624777 AGATTCATCCATTTTGCTCCGT 58.375 40.909 0.00 0.00 0.00 4.69
3176 19804 4.576053 TGTAGATTCATCCATTTTGCTCCG 59.424 41.667 0.00 0.00 0.00 4.63
3177 19805 5.591877 AGTGTAGATTCATCCATTTTGCTCC 59.408 40.000 0.00 0.00 0.00 4.70
3178 19806 6.690194 AGTGTAGATTCATCCATTTTGCTC 57.310 37.500 0.00 0.00 0.00 4.26
3179 19807 6.660521 TGAAGTGTAGATTCATCCATTTTGCT 59.339 34.615 0.00 0.00 31.86 3.91
3180 19808 6.855836 TGAAGTGTAGATTCATCCATTTTGC 58.144 36.000 0.00 0.00 31.86 3.68
3181 19809 9.865321 ATTTGAAGTGTAGATTCATCCATTTTG 57.135 29.630 0.00 0.00 36.60 2.44
3182 19810 9.865321 CATTTGAAGTGTAGATTCATCCATTTT 57.135 29.630 0.00 0.00 36.60 1.82
3183 19811 7.977853 GCATTTGAAGTGTAGATTCATCCATTT 59.022 33.333 0.00 0.00 36.60 2.32
3184 19812 7.123098 TGCATTTGAAGTGTAGATTCATCCATT 59.877 33.333 0.00 0.00 36.60 3.16
3185 19813 6.604396 TGCATTTGAAGTGTAGATTCATCCAT 59.396 34.615 0.00 0.00 36.60 3.41
3186 19814 5.945191 TGCATTTGAAGTGTAGATTCATCCA 59.055 36.000 0.00 0.00 36.60 3.41
3187 19815 6.441093 TGCATTTGAAGTGTAGATTCATCC 57.559 37.500 0.00 0.00 36.60 3.51
3188 19816 7.928103 AGATGCATTTGAAGTGTAGATTCATC 58.072 34.615 0.00 0.00 36.60 2.92
3189 19817 7.876936 AGATGCATTTGAAGTGTAGATTCAT 57.123 32.000 0.00 0.00 36.60 2.57
3190 19818 8.969260 ATAGATGCATTTGAAGTGTAGATTCA 57.031 30.769 0.00 0.00 34.93 2.57
3197 19825 9.224267 GGATGTATATAGATGCATTTGAAGTGT 57.776 33.333 0.00 0.00 38.38 3.55
3198 19826 8.385858 CGGATGTATATAGATGCATTTGAAGTG 58.614 37.037 11.19 0.00 38.38 3.16
3199 19827 8.097038 ACGGATGTATATAGATGCATTTGAAGT 58.903 33.333 11.19 0.00 38.38 3.01
3200 19828 8.484641 ACGGATGTATATAGATGCATTTGAAG 57.515 34.615 11.19 0.00 38.38 3.02
3202 19830 9.533253 CATACGGATGTATATAGATGCATTTGA 57.467 33.333 11.19 0.00 38.38 2.69
3203 19831 9.317936 ACATACGGATGTATATAGATGCATTTG 57.682 33.333 12.79 4.74 44.77 2.32
3204 19832 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
3205 19833 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
3206 19834 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
3207 19835 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
3208 19836 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
3209 19837 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
3210 19838 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
3211 19839 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
3212 19840 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
3213 19841 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
3214 19842 8.362464 ACTATGAACCACATACGGATGTATAT 57.638 34.615 14.23 1.68 44.82 0.86
3215 19843 7.770366 ACTATGAACCACATACGGATGTATA 57.230 36.000 14.23 6.48 44.82 1.47
3216 19844 6.665992 ACTATGAACCACATACGGATGTAT 57.334 37.500 14.23 5.54 44.82 2.29
3217 19845 6.999871 TCTACTATGAACCACATACGGATGTA 59.000 38.462 14.23 0.00 44.82 2.29
3219 19847 6.327279 TCTACTATGAACCACATACGGATG 57.673 41.667 5.94 5.94 40.07 3.51
3220 19848 6.971726 TTCTACTATGAACCACATACGGAT 57.028 37.500 0.00 0.00 40.07 4.18
3221 19849 6.776116 AGATTCTACTATGAACCACATACGGA 59.224 38.462 0.00 0.00 40.07 4.69
3222 19850 6.982852 AGATTCTACTATGAACCACATACGG 58.017 40.000 0.00 0.00 40.07 4.02
3223 19851 7.877003 AGAGATTCTACTATGAACCACATACG 58.123 38.462 0.00 0.00 40.07 3.06
3249 19877 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3250 19878 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3251 19879 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3252 19880 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3253 19881 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3254 19882 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3255 19883 6.041751 CACTCCCTCCGTTCCTAAATATAAGT 59.958 42.308 0.00 0.00 0.00 2.24
3256 19884 6.456501 CACTCCCTCCGTTCCTAAATATAAG 58.543 44.000 0.00 0.00 0.00 1.73
3257 19885 5.306160 CCACTCCCTCCGTTCCTAAATATAA 59.694 44.000 0.00 0.00 0.00 0.98
3258 19886 4.836736 CCACTCCCTCCGTTCCTAAATATA 59.163 45.833 0.00 0.00 0.00 0.86
3259 19887 3.646637 CCACTCCCTCCGTTCCTAAATAT 59.353 47.826 0.00 0.00 0.00 1.28
3260 19888 3.036091 CCACTCCCTCCGTTCCTAAATA 58.964 50.000 0.00 0.00 0.00 1.40
3261 19889 1.838077 CCACTCCCTCCGTTCCTAAAT 59.162 52.381 0.00 0.00 0.00 1.40
3262 19890 1.272807 CCACTCCCTCCGTTCCTAAA 58.727 55.000 0.00 0.00 0.00 1.85
3263 19891 0.115745 ACCACTCCCTCCGTTCCTAA 59.884 55.000 0.00 0.00 0.00 2.69
3264 19892 1.002069 TACCACTCCCTCCGTTCCTA 58.998 55.000 0.00 0.00 0.00 2.94
3265 19893 0.324460 CTACCACTCCCTCCGTTCCT 60.324 60.000 0.00 0.00 0.00 3.36
3266 19894 1.328430 CCTACCACTCCCTCCGTTCC 61.328 65.000 0.00 0.00 0.00 3.62
3267 19895 1.328430 CCCTACCACTCCCTCCGTTC 61.328 65.000 0.00 0.00 0.00 3.95
3268 19896 1.305887 CCCTACCACTCCCTCCGTT 60.306 63.158 0.00 0.00 0.00 4.44
3269 19897 2.363361 CCCTACCACTCCCTCCGT 59.637 66.667 0.00 0.00 0.00 4.69
3270 19898 2.058595 CACCCTACCACTCCCTCCG 61.059 68.421 0.00 0.00 0.00 4.63
3271 19899 0.976590 GACACCCTACCACTCCCTCC 60.977 65.000 0.00 0.00 0.00 4.30
3272 19900 0.252103 TGACACCCTACCACTCCCTC 60.252 60.000 0.00 0.00 0.00 4.30
3273 19901 0.192566 TTGACACCCTACCACTCCCT 59.807 55.000 0.00 0.00 0.00 4.20
3274 19902 0.323957 GTTGACACCCTACCACTCCC 59.676 60.000 0.00 0.00 0.00 4.30
3275 19903 1.349067 AGTTGACACCCTACCACTCC 58.651 55.000 0.00 0.00 0.00 3.85
3276 19904 2.496470 CCTAGTTGACACCCTACCACTC 59.504 54.545 0.00 0.00 0.00 3.51
3277 19905 2.537143 CCTAGTTGACACCCTACCACT 58.463 52.381 0.00 0.00 0.00 4.00
3278 19906 1.553704 CCCTAGTTGACACCCTACCAC 59.446 57.143 0.00 0.00 0.00 4.16
3279 19907 1.150560 ACCCTAGTTGACACCCTACCA 59.849 52.381 0.00 0.00 0.00 3.25
3280 19908 1.948391 ACCCTAGTTGACACCCTACC 58.052 55.000 0.00 0.00 0.00 3.18
3291 19919 1.774856 ACCACTCAAGCAACCCTAGTT 59.225 47.619 0.00 0.00 36.33 2.24
3292 19920 1.435256 ACCACTCAAGCAACCCTAGT 58.565 50.000 0.00 0.00 0.00 2.57
3293 19921 2.832129 TCTACCACTCAAGCAACCCTAG 59.168 50.000 0.00 0.00 0.00 3.02
3294 19922 2.832129 CTCTACCACTCAAGCAACCCTA 59.168 50.000 0.00 0.00 0.00 3.53
3295 19923 1.625818 CTCTACCACTCAAGCAACCCT 59.374 52.381 0.00 0.00 0.00 4.34
3296 19924 1.348036 ACTCTACCACTCAAGCAACCC 59.652 52.381 0.00 0.00 0.00 4.11
3297 19925 2.689646 GACTCTACCACTCAAGCAACC 58.310 52.381 0.00 0.00 0.00 3.77
3298 19926 2.288273 ACGACTCTACCACTCAAGCAAC 60.288 50.000 0.00 0.00 0.00 4.17
3299 19927 1.961394 ACGACTCTACCACTCAAGCAA 59.039 47.619 0.00 0.00 0.00 3.91
3300 19928 1.617322 ACGACTCTACCACTCAAGCA 58.383 50.000 0.00 0.00 0.00 3.91
3301 19929 2.329379 CAACGACTCTACCACTCAAGC 58.671 52.381 0.00 0.00 0.00 4.01
3302 19930 2.352814 CCCAACGACTCTACCACTCAAG 60.353 54.545 0.00 0.00 0.00 3.02
3303 19931 1.616865 CCCAACGACTCTACCACTCAA 59.383 52.381 0.00 0.00 0.00 3.02
3304 19932 1.254026 CCCAACGACTCTACCACTCA 58.746 55.000 0.00 0.00 0.00 3.41
3309 19937 1.079336 GTGCCCCAACGACTCTACC 60.079 63.158 0.00 0.00 0.00 3.18
3312 19940 2.743718 CTGTGCCCCAACGACTCT 59.256 61.111 0.00 0.00 0.00 3.24
3314 19942 4.643387 GGCTGTGCCCCAACGACT 62.643 66.667 0.00 0.00 44.06 4.18
3358 19993 2.421220 GGAAACCAGCCGAAAACCA 58.579 52.632 0.00 0.00 0.00 3.67
3369 20004 6.289656 ATTGATTGGCCAATAAGGGAAACCA 61.290 40.000 30.73 17.50 43.35 3.67
3376 20011 7.333323 AGAAGAAAATTGATTGGCCAATAAGG 58.667 34.615 30.73 0.00 35.86 2.69
3420 20061 2.185004 TTTGAGTAACCAGCAGGAGC 57.815 50.000 0.35 0.00 42.56 4.70
3447 20092 0.035056 CCAGAGCTCCCGGTGATTTT 60.035 55.000 10.93 0.00 0.00 1.82
3520 20165 7.617557 ACAAATTTCGTTCTAATTGTTGCAAC 58.382 30.769 22.83 22.83 0.00 4.17
3536 20181 3.044986 CTGAGTGTGCCAACAAATTTCG 58.955 45.455 0.00 0.00 38.27 3.46
3565 20211 7.426410 ACATTATCAGTACTACGAATGTCCAG 58.574 38.462 16.79 1.57 33.40 3.86
3586 20232 7.225341 GGAAAAAGAAACTGCAAATCTGACATT 59.775 33.333 0.00 0.00 0.00 2.71
3589 20235 6.019559 GTGGAAAAAGAAACTGCAAATCTGAC 60.020 38.462 0.00 0.00 0.00 3.51
3590 20236 6.042143 GTGGAAAAAGAAACTGCAAATCTGA 58.958 36.000 0.00 0.00 0.00 3.27
3591 20237 5.234972 GGTGGAAAAAGAAACTGCAAATCTG 59.765 40.000 0.00 0.00 0.00 2.90
3592 20238 5.104982 TGGTGGAAAAAGAAACTGCAAATCT 60.105 36.000 0.00 0.00 0.00 2.40
3593 20239 5.115480 TGGTGGAAAAAGAAACTGCAAATC 58.885 37.500 0.00 0.00 0.00 2.17
3594 20240 5.096443 TGGTGGAAAAAGAAACTGCAAAT 57.904 34.783 0.00 0.00 0.00 2.32
3595 20241 4.221703 TCTGGTGGAAAAAGAAACTGCAAA 59.778 37.500 0.00 0.00 0.00 3.68
3596 20242 3.766591 TCTGGTGGAAAAAGAAACTGCAA 59.233 39.130 0.00 0.00 0.00 4.08
3597 20243 3.360867 TCTGGTGGAAAAAGAAACTGCA 58.639 40.909 0.00 0.00 0.00 4.41
3598 20244 4.385358 TTCTGGTGGAAAAAGAAACTGC 57.615 40.909 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.