Multiple sequence alignment - TraesCS6D01G391900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G391900 chr6D 100.000 4003 0 0 1 4003 466620915 466624917 0.000000e+00 7393.0
1 TraesCS6D01G391900 chr6D 87.923 207 21 4 707 911 465967384 465967180 1.440000e-59 241.0
2 TraesCS6D01G391900 chr6D 84.351 262 22 8 630 873 465348487 465348227 5.170000e-59 239.0
3 TraesCS6D01G391900 chr6D 83.806 247 30 5 688 924 465745388 465745142 4.030000e-55 226.0
4 TraesCS6D01G391900 chr6D 97.581 124 3 0 3880 4003 118612859 118612982 3.130000e-51 213.0
5 TraesCS6D01G391900 chr6D 87.500 104 8 5 3181 3280 346959084 346958982 9.090000e-22 115.0
6 TraesCS6D01G391900 chr6D 89.655 87 8 1 3193 3278 346958984 346959070 4.230000e-20 110.0
7 TraesCS6D01G391900 chr6B 95.086 3907 101 33 25 3883 711876266 711880129 0.000000e+00 6067.0
8 TraesCS6D01G391900 chr6B 88.994 527 36 10 630 1136 711709443 711709967 2.030000e-177 632.0
9 TraesCS6D01G391900 chr6B 86.777 484 55 8 630 1109 711869715 711870193 7.620000e-147 531.0
10 TraesCS6D01G391900 chr6B 85.991 464 46 11 94 546 711714576 711715031 2.800000e-131 479.0
11 TraesCS6D01G391900 chr6B 88.715 319 27 7 25 338 711754491 711754805 8.120000e-102 381.0
12 TraesCS6D01G391900 chr6B 87.671 292 32 3 819 1109 711762634 711762922 1.780000e-88 337.0
13 TraesCS6D01G391900 chr6B 93.846 65 3 1 630 693 711703551 711703487 3.290000e-16 97.1
14 TraesCS6D01G391900 chr6B 97.222 36 1 0 540 575 711704119 711704084 1.200000e-05 62.1
15 TraesCS6D01G391900 chr6A 77.660 1222 223 38 1302 2487 613094622 613095829 0.000000e+00 699.0
16 TraesCS6D01G391900 chr6A 88.988 563 56 4 25 581 613078094 613078656 0.000000e+00 691.0
17 TraesCS6D01G391900 chr6A 84.788 401 45 8 740 1136 613094123 613094511 4.850000e-104 388.0
18 TraesCS6D01G391900 chr6A 90.351 228 16 5 688 911 613079002 613079227 1.090000e-75 294.0
19 TraesCS6D01G391900 chr6A 88.837 215 19 4 688 899 612109827 612109615 3.970000e-65 259.0
20 TraesCS6D01G391900 chr6A 88.350 206 23 1 688 892 611901379 611901584 3.090000e-61 246.0
21 TraesCS6D01G391900 chr6A 97.222 36 1 0 540 575 612582891 612582926 1.200000e-05 62.1
22 TraesCS6D01G391900 chr1B 90.777 206 18 1 346 551 92327788 92327584 1.420000e-69 274.0
23 TraesCS6D01G391900 chr1B 95.062 162 7 1 975 1136 92353262 92353102 1.850000e-63 254.0
24 TraesCS6D01G391900 chr3D 84.000 225 34 2 3661 3884 580128515 580128292 8.710000e-52 215.0
25 TraesCS6D01G391900 chr2D 97.581 124 3 0 3880 4003 10128488 10128611 3.130000e-51 213.0
26 TraesCS6D01G391900 chr2D 97.479 119 3 0 3885 4003 479554191 479554073 1.890000e-48 204.0
27 TraesCS6D01G391900 chr1D 98.333 120 2 0 3884 4003 20424311 20424430 1.130000e-50 211.0
28 TraesCS6D01G391900 chr1D 97.500 120 3 0 3884 4003 16256698 16256579 5.240000e-49 206.0
29 TraesCS6D01G391900 chr1D 97.500 120 3 0 3884 4003 451974547 451974428 5.240000e-49 206.0
30 TraesCS6D01G391900 chr1D 97.368 38 1 0 3234 3271 455751341 455751378 9.290000e-07 65.8
31 TraesCS6D01G391900 chr5D 98.319 119 2 0 3885 4003 510390465 510390583 4.050000e-50 209.0
32 TraesCS6D01G391900 chr5D 81.448 221 39 2 3662 3881 42067967 42067748 3.180000e-41 180.0
33 TraesCS6D01G391900 chr5D 73.731 335 71 13 97 422 209653658 209653332 9.090000e-22 115.0
34 TraesCS6D01G391900 chrUn 97.500 120 3 0 3884 4003 203369456 203369337 5.240000e-49 206.0
35 TraesCS6D01G391900 chr7D 83.482 224 34 3 3660 3881 5318957 5318735 5.240000e-49 206.0
36 TraesCS6D01G391900 chr7D 95.833 120 5 0 3884 4003 14794147 14794028 1.140000e-45 195.0
37 TraesCS6D01G391900 chr7D 82.063 223 38 2 3660 3880 459077910 459077688 5.280000e-44 189.0
38 TraesCS6D01G391900 chr3B 82.353 221 37 2 3662 3881 748466692 748466911 1.470000e-44 191.0
39 TraesCS6D01G391900 chr1A 83.099 213 33 2 3662 3872 478426795 478427006 1.470000e-44 191.0
40 TraesCS6D01G391900 chr1A 83.417 199 33 0 3682 3880 478423700 478423898 6.830000e-43 185.0
41 TraesCS6D01G391900 chr5A 81.579 228 38 4 3656 3881 375370472 375370247 6.830000e-43 185.0
42 TraesCS6D01G391900 chr5A 97.222 36 1 0 540 575 46960569 46960534 1.200000e-05 62.1
43 TraesCS6D01G391900 chr3A 75.449 334 65 13 97 422 482410656 482410980 3.220000e-31 147.0
44 TraesCS6D01G391900 chr2B 83.784 148 24 0 1322 1469 118465426 118465279 1.500000e-29 141.0
45 TraesCS6D01G391900 chr2A 76.923 169 35 3 95 262 772877542 772877377 4.260000e-15 93.5
46 TraesCS6D01G391900 chr7B 83.133 83 8 4 3198 3280 329924812 329924736 2.000000e-08 71.3
47 TraesCS6D01G391900 chr7B 80.952 84 15 1 272 354 479146318 479146401 9.290000e-07 65.8
48 TraesCS6D01G391900 chr4B 97.059 34 1 0 540 573 34537879 34537912 1.550000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G391900 chr6D 466620915 466624917 4002 False 7393.0 7393 100.0000 1 4003 1 chr6D.!!$F3 4002
1 TraesCS6D01G391900 chr6B 711876266 711880129 3863 False 6067.0 6067 95.0860 25 3883 1 chr6B.!!$F6 3858
2 TraesCS6D01G391900 chr6B 711709443 711709967 524 False 632.0 632 88.9940 630 1136 1 chr6B.!!$F1 506
3 TraesCS6D01G391900 chr6A 613094123 613095829 1706 False 543.5 699 81.2240 740 2487 2 chr6A.!!$F4 1747
4 TraesCS6D01G391900 chr6A 613078094 613079227 1133 False 492.5 691 89.6695 25 911 2 chr6A.!!$F3 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 337 0.592148 AGAGTGTCGTCGGTCTTGAC 59.408 55.000 0.0 0.0 35.49 3.18 F
1470 1740 1.342074 CCGATCCCTTCTATGCTCCA 58.658 55.000 0.0 0.0 0.00 3.86 F
1913 2198 1.597854 CTCCGCTTGGACAACTGCA 60.598 57.895 0.0 0.0 36.65 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 2090 1.730451 TTGAGTCGCGTGAGACCACA 61.730 55.0 5.77 0.0 43.34 4.17 R
2543 2855 0.447801 CGGCGCTGCAAGTTTTAGAT 59.552 50.0 7.64 0.0 35.30 1.98 R
3908 4221 0.033503 AAGGCCCTTACAAATCGGGG 60.034 55.0 0.00 0.0 41.64 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.862574 CACTGCAAATGACAATCCTGAATG 59.137 41.667 0.00 0.00 0.00 2.67
54 55 1.295357 TGAATGTGCGCCACCTTACG 61.295 55.000 4.18 0.00 32.73 3.18
56 57 0.604243 AATGTGCGCCACCTTACGAA 60.604 50.000 4.18 0.00 32.73 3.85
64 65 2.324860 GCCACCTTACGAAAATGCAAC 58.675 47.619 0.00 0.00 0.00 4.17
153 154 3.181456 CCCTGGCCAAATTCTTTCAACAA 60.181 43.478 7.01 0.00 0.00 2.83
197 198 5.914033 AGCTACTTTGTAAGTCTGACAACA 58.086 37.500 10.88 10.80 41.77 3.33
250 251 2.764572 GGGTGAAGAGGAGATCCGTTAA 59.235 50.000 0.00 0.00 42.08 2.01
251 252 3.197116 GGGTGAAGAGGAGATCCGTTAAA 59.803 47.826 0.00 0.00 42.08 1.52
277 279 2.489275 CCTGGTGTTTGCTGCGGTT 61.489 57.895 0.00 0.00 0.00 4.44
334 337 0.592148 AGAGTGTCGTCGGTCTTGAC 59.408 55.000 0.00 0.00 35.49 3.18
394 399 6.244275 GCTAGCTTTCAGATGTCTTTTTACG 58.756 40.000 7.70 0.00 0.00 3.18
404 409 6.570058 CAGATGTCTTTTTACGAGTTTTGTCG 59.430 38.462 0.00 0.00 45.76 4.35
515 527 5.407407 TTTTGGAAGTAGCAGAGAGTAGG 57.593 43.478 0.00 0.00 0.00 3.18
529 541 6.097129 GCAGAGAGTAGGGAAATACTACAAGT 59.903 42.308 5.52 0.00 42.47 3.16
530 542 7.363968 GCAGAGAGTAGGGAAATACTACAAGTT 60.364 40.741 5.52 0.00 42.47 2.66
532 544 8.751242 AGAGAGTAGGGAAATACTACAAGTTTC 58.249 37.037 5.52 0.00 42.47 2.78
599 634 1.823899 GCCTTTAGCCCATCGGTGG 60.824 63.158 8.08 8.08 45.61 4.61
718 976 1.473677 CAATGGAAGCAATCAAGCGGA 59.526 47.619 0.00 0.00 40.15 5.54
809 1068 4.811557 GTCCTTTCCGGATTACAATCAGAG 59.188 45.833 4.15 0.00 45.44 3.35
1048 1312 4.664062 CCAGACCGATGGCCAAAT 57.336 55.556 10.96 0.00 32.48 2.32
1183 1450 8.422577 AAAAATAGGAGCATGGTAGAAAAAGT 57.577 30.769 0.00 0.00 0.00 2.66
1188 1455 2.558359 AGCATGGTAGAAAAAGTGTGGC 59.442 45.455 0.00 0.00 0.00 5.01
1202 1469 3.205338 AGTGTGGCCAAAATTGCTTTTC 58.795 40.909 7.24 0.00 32.21 2.29
1293 1563 7.468768 CGAGGCTGTATGTTAGAAATCACTCTA 60.469 40.741 0.00 0.00 0.00 2.43
1470 1740 1.342074 CCGATCCCTTCTATGCTCCA 58.658 55.000 0.00 0.00 0.00 3.86
1678 1963 2.159296 TGTCAGGAACACCATATCGACG 60.159 50.000 0.00 0.00 31.20 5.12
1729 2014 6.672266 ATCTTGACAGAGAAGGTGACTAAA 57.328 37.500 0.00 0.00 32.87 1.85
1805 2090 2.936919 TGCTTGTCCAGACACATTCT 57.063 45.000 0.00 0.00 41.67 2.40
1873 2158 6.688073 TCAGACTTCCCTAAAATCTTCAGT 57.312 37.500 0.00 0.00 0.00 3.41
1913 2198 1.597854 CTCCGCTTGGACAACTGCA 60.598 57.895 0.00 0.00 36.65 4.41
2236 2529 8.510243 AATTAGAGTATTGTTGATGATGCACA 57.490 30.769 0.00 0.00 0.00 4.57
2281 2574 8.722394 CCTTTATTTTGTGAGGTTCTAGTCTTC 58.278 37.037 0.00 0.00 0.00 2.87
2385 2697 1.987770 GTGCATTTGGCTGACATTTCG 59.012 47.619 0.00 0.00 45.15 3.46
2416 2728 3.258123 TGATCTGACTTGGACGATGTTCA 59.742 43.478 0.00 0.00 0.00 3.18
2477 2789 7.789273 TCACGGTAAAGTCTTCAATTTGTAA 57.211 32.000 0.00 0.00 0.00 2.41
2531 2843 3.256383 TGCTGCATGCTGAAGTTACAATT 59.744 39.130 26.71 0.00 43.37 2.32
2538 2850 7.328982 TGCATGCTGAAGTTACAATTTGTATTG 59.671 33.333 20.33 0.00 45.39 1.90
2631 2943 3.665544 GCAAATGTGTTGCAGGTGT 57.334 47.368 6.19 0.00 44.34 4.16
2648 2960 1.139058 GTGTGGGATAGGTGCCTACTG 59.861 57.143 0.00 0.00 37.72 2.74
2649 2961 1.273609 TGTGGGATAGGTGCCTACTGT 60.274 52.381 0.00 0.00 37.72 3.55
2651 2963 1.837439 TGGGATAGGTGCCTACTGTTG 59.163 52.381 0.00 0.00 36.66 3.33
2705 3017 1.883732 CGAGGAGAAGAAGGACGCA 59.116 57.895 0.00 0.00 0.00 5.24
2744 3056 3.064958 CGTCTGCATCAGATTTCAAGCAT 59.935 43.478 0.00 0.00 42.73 3.79
2784 3096 4.951715 TCAGGATCATTGGGTTTCAATCAG 59.048 41.667 0.00 0.00 43.70 2.90
2787 3099 5.420104 AGGATCATTGGGTTTCAATCAGAAC 59.580 40.000 0.00 0.00 43.70 3.01
2795 3107 5.186797 TGGGTTTCAATCAGAACACAAGTTT 59.813 36.000 0.00 0.00 38.30 2.66
3091 3403 4.153475 GTGTTTGCCTATGTTATCGTGTGT 59.847 41.667 0.00 0.00 0.00 3.72
3316 3628 9.005777 GGTTTATAAATCGAGCCACCATATTAA 57.994 33.333 0.31 0.00 0.00 1.40
3620 3933 5.776173 ATGAGTCCATACTTCTTACGGAG 57.224 43.478 0.00 0.00 35.56 4.63
3701 4014 9.770097 TGATCCAGATCTATTATCAAAGTTCAC 57.230 33.333 8.99 0.00 38.60 3.18
3773 4086 4.748892 AGATCACCGAACAATCACTACTG 58.251 43.478 0.00 0.00 0.00 2.74
3884 4197 4.717313 GTGCCCCAAGGACCGGTC 62.717 72.222 27.04 27.04 33.47 4.79
3886 4199 4.717313 GCCCCAAGGACCGGTCAC 62.717 72.222 34.40 23.29 33.47 3.67
3887 4200 2.928396 CCCCAAGGACCGGTCACT 60.928 66.667 34.40 25.04 33.47 3.41
3888 4201 1.611261 CCCCAAGGACCGGTCACTA 60.611 63.158 34.40 0.00 33.47 2.74
3889 4202 1.614241 CCCCAAGGACCGGTCACTAG 61.614 65.000 34.40 21.18 33.47 2.57
3890 4203 0.903454 CCCAAGGACCGGTCACTAGT 60.903 60.000 34.40 13.13 0.00 2.57
3891 4204 1.617804 CCCAAGGACCGGTCACTAGTA 60.618 57.143 34.40 0.00 0.00 1.82
3892 4205 1.749634 CCAAGGACCGGTCACTAGTAG 59.250 57.143 34.40 16.25 0.00 2.57
3893 4206 1.749634 CAAGGACCGGTCACTAGTAGG 59.250 57.143 34.40 11.63 0.00 3.18
3894 4207 1.293062 AGGACCGGTCACTAGTAGGA 58.707 55.000 34.40 0.00 0.00 2.94
3895 4208 1.637553 AGGACCGGTCACTAGTAGGAA 59.362 52.381 34.40 0.00 0.00 3.36
3896 4209 2.042162 AGGACCGGTCACTAGTAGGAAA 59.958 50.000 34.40 0.00 0.00 3.13
3897 4210 3.029570 GGACCGGTCACTAGTAGGAAAT 58.970 50.000 34.40 0.00 0.00 2.17
3898 4211 3.181478 GGACCGGTCACTAGTAGGAAATG 60.181 52.174 34.40 0.00 0.00 2.32
3899 4212 2.764572 ACCGGTCACTAGTAGGAAATGG 59.235 50.000 0.00 0.68 0.00 3.16
3900 4213 2.102588 CCGGTCACTAGTAGGAAATGGG 59.897 54.545 1.45 0.00 0.00 4.00
3901 4214 2.102588 CGGTCACTAGTAGGAAATGGGG 59.897 54.545 1.45 0.00 0.00 4.96
3902 4215 2.158798 GGTCACTAGTAGGAAATGGGGC 60.159 54.545 1.45 0.00 0.00 5.80
3903 4216 2.772515 GTCACTAGTAGGAAATGGGGCT 59.227 50.000 1.45 0.00 0.00 5.19
3904 4217 3.200165 GTCACTAGTAGGAAATGGGGCTT 59.800 47.826 1.45 0.00 0.00 4.35
3905 4218 3.850173 TCACTAGTAGGAAATGGGGCTTT 59.150 43.478 1.45 0.00 0.00 3.51
3906 4219 4.291249 TCACTAGTAGGAAATGGGGCTTTT 59.709 41.667 1.45 0.00 0.00 2.27
3907 4220 5.489637 TCACTAGTAGGAAATGGGGCTTTTA 59.510 40.000 1.45 0.00 0.00 1.52
3908 4221 5.589050 CACTAGTAGGAAATGGGGCTTTTAC 59.411 44.000 1.45 0.00 0.00 2.01
3909 4222 3.977312 AGTAGGAAATGGGGCTTTTACC 58.023 45.455 0.00 0.00 0.00 2.85
3918 4231 1.552578 GGGCTTTTACCCCGATTTGT 58.447 50.000 0.00 0.00 45.00 2.83
3919 4232 2.725637 GGGCTTTTACCCCGATTTGTA 58.274 47.619 0.00 0.00 45.00 2.41
3920 4233 3.090790 GGGCTTTTACCCCGATTTGTAA 58.909 45.455 0.00 0.00 45.00 2.41
3921 4234 3.129813 GGGCTTTTACCCCGATTTGTAAG 59.870 47.826 0.00 0.00 45.00 2.34
3922 4235 3.129813 GGCTTTTACCCCGATTTGTAAGG 59.870 47.826 0.00 0.00 0.00 2.69
3923 4236 3.129813 GCTTTTACCCCGATTTGTAAGGG 59.870 47.826 0.00 0.00 45.75 3.95
3924 4237 2.423446 TTACCCCGATTTGTAAGGGC 57.577 50.000 0.00 0.00 43.96 5.19
3925 4238 0.547553 TACCCCGATTTGTAAGGGCC 59.452 55.000 0.00 0.00 43.96 5.80
3926 4239 1.212250 ACCCCGATTTGTAAGGGCCT 61.212 55.000 0.00 0.00 43.96 5.19
3927 4240 0.033503 CCCCGATTTGTAAGGGCCTT 60.034 55.000 24.44 24.44 43.74 4.35
3928 4241 1.618616 CCCCGATTTGTAAGGGCCTTT 60.619 52.381 26.29 5.43 43.74 3.11
3929 4242 2.176045 CCCGATTTGTAAGGGCCTTTT 58.824 47.619 26.29 2.86 38.51 2.27
3930 4243 2.094234 CCCGATTTGTAAGGGCCTTTTG 60.094 50.000 26.29 9.65 38.51 2.44
3931 4244 2.560981 CCGATTTGTAAGGGCCTTTTGT 59.439 45.455 26.29 1.50 0.00 2.83
3932 4245 3.366985 CCGATTTGTAAGGGCCTTTTGTC 60.367 47.826 26.29 14.10 0.00 3.18
3933 4246 3.366985 CGATTTGTAAGGGCCTTTTGTCC 60.367 47.826 26.29 8.91 0.00 4.02
3934 4247 2.003937 TTGTAAGGGCCTTTTGTCCC 57.996 50.000 26.29 6.47 42.94 4.46
3938 4251 2.203582 GGGCCTTTTGTCCCGGTT 60.204 61.111 0.84 0.00 32.00 4.44
3939 4252 1.835267 GGGCCTTTTGTCCCGGTTT 60.835 57.895 0.84 0.00 32.00 3.27
3940 4253 1.404479 GGGCCTTTTGTCCCGGTTTT 61.404 55.000 0.84 0.00 32.00 2.43
3941 4254 0.032952 GGCCTTTTGTCCCGGTTTTC 59.967 55.000 0.00 0.00 0.00 2.29
3942 4255 0.318360 GCCTTTTGTCCCGGTTTTCG 60.318 55.000 0.00 0.00 38.88 3.46
3943 4256 1.310904 CCTTTTGTCCCGGTTTTCGA 58.689 50.000 0.00 0.00 42.43 3.71
3944 4257 1.677052 CCTTTTGTCCCGGTTTTCGAA 59.323 47.619 0.00 0.00 42.43 3.71
3945 4258 2.542205 CCTTTTGTCCCGGTTTTCGAAC 60.542 50.000 0.00 0.00 42.43 3.95
3946 4259 2.041251 TTTGTCCCGGTTTTCGAACT 57.959 45.000 0.00 0.00 42.43 3.01
3947 4260 1.301423 TTGTCCCGGTTTTCGAACTG 58.699 50.000 0.00 0.00 42.43 3.16
3948 4261 0.533308 TGTCCCGGTTTTCGAACTGG 60.533 55.000 7.99 7.99 46.43 4.00
3950 4263 4.783667 CCGGTTTTCGAACTGGGA 57.216 55.556 7.16 0.00 43.82 4.37
3951 4264 2.241171 CCGGTTTTCGAACTGGGAC 58.759 57.895 7.16 0.00 43.82 4.46
3952 4265 0.250166 CCGGTTTTCGAACTGGGACT 60.250 55.000 7.16 0.00 43.82 3.85
3953 4266 1.001181 CCGGTTTTCGAACTGGGACTA 59.999 52.381 7.16 0.00 43.82 2.59
3954 4267 2.548493 CCGGTTTTCGAACTGGGACTAA 60.548 50.000 7.16 0.00 43.82 2.24
3955 4268 3.132925 CGGTTTTCGAACTGGGACTAAA 58.867 45.455 0.00 0.00 42.43 1.85
3956 4269 3.185797 CGGTTTTCGAACTGGGACTAAAG 59.814 47.826 0.00 0.00 42.43 1.85
3957 4270 3.501062 GGTTTTCGAACTGGGACTAAAGG 59.499 47.826 0.00 0.00 0.00 3.11
3958 4271 3.412237 TTTCGAACTGGGACTAAAGGG 57.588 47.619 0.00 0.00 0.00 3.95
3959 4272 2.019807 TCGAACTGGGACTAAAGGGT 57.980 50.000 0.00 0.00 0.00 4.34
3960 4273 1.897802 TCGAACTGGGACTAAAGGGTC 59.102 52.381 0.00 0.00 35.66 4.46
3961 4274 1.403780 CGAACTGGGACTAAAGGGTCG 60.404 57.143 0.00 0.00 37.12 4.79
3962 4275 1.622312 GAACTGGGACTAAAGGGTCGT 59.378 52.381 0.00 0.00 37.12 4.34
3963 4276 1.725803 ACTGGGACTAAAGGGTCGTT 58.274 50.000 0.00 0.00 37.12 3.85
3964 4277 2.893424 ACTGGGACTAAAGGGTCGTTA 58.107 47.619 0.00 0.00 37.12 3.18
3965 4278 2.564504 ACTGGGACTAAAGGGTCGTTAC 59.435 50.000 0.00 0.00 37.12 2.50
3966 4279 2.830321 CTGGGACTAAAGGGTCGTTACT 59.170 50.000 0.00 0.00 37.12 2.24
3967 4280 4.019174 CTGGGACTAAAGGGTCGTTACTA 58.981 47.826 0.00 0.00 37.12 1.82
3968 4281 4.415596 TGGGACTAAAGGGTCGTTACTAA 58.584 43.478 0.00 0.00 37.12 2.24
3969 4282 4.837860 TGGGACTAAAGGGTCGTTACTAAA 59.162 41.667 0.00 0.00 37.12 1.85
3970 4283 5.047092 TGGGACTAAAGGGTCGTTACTAAAG 60.047 44.000 0.00 0.00 37.12 1.85
3971 4284 4.867047 GGACTAAAGGGTCGTTACTAAAGC 59.133 45.833 0.00 0.00 37.12 3.51
3972 4285 4.825422 ACTAAAGGGTCGTTACTAAAGCC 58.175 43.478 0.00 0.00 0.00 4.35
3973 4286 2.775911 AAGGGTCGTTACTAAAGCCC 57.224 50.000 0.00 0.00 36.46 5.19
3974 4287 1.948391 AGGGTCGTTACTAAAGCCCT 58.052 50.000 9.43 9.43 41.31 5.19
3975 4288 3.105959 AGGGTCGTTACTAAAGCCCTA 57.894 47.619 12.05 0.00 44.00 3.53
3976 4289 3.444029 AGGGTCGTTACTAAAGCCCTAA 58.556 45.455 12.05 0.00 44.00 2.69
3977 4290 3.196469 AGGGTCGTTACTAAAGCCCTAAC 59.804 47.826 12.05 0.00 44.00 2.34
3978 4291 3.525537 GGTCGTTACTAAAGCCCTAACC 58.474 50.000 0.00 0.00 0.00 2.85
3979 4292 3.525537 GTCGTTACTAAAGCCCTAACCC 58.474 50.000 0.00 0.00 0.00 4.11
3980 4293 3.196469 GTCGTTACTAAAGCCCTAACCCT 59.804 47.826 0.00 0.00 0.00 4.34
3981 4294 3.840078 TCGTTACTAAAGCCCTAACCCTT 59.160 43.478 0.00 0.00 0.00 3.95
3982 4295 4.286808 TCGTTACTAAAGCCCTAACCCTTT 59.713 41.667 0.00 0.00 35.60 3.11
3983 4296 5.483583 TCGTTACTAAAGCCCTAACCCTTTA 59.516 40.000 0.00 0.00 33.64 1.85
3987 4300 3.733883 AAAGCCCTAACCCTTTAGTCC 57.266 47.619 0.00 0.00 33.92 3.85
3988 4301 1.592948 AGCCCTAACCCTTTAGTCCC 58.407 55.000 0.00 0.00 33.92 4.46
3989 4302 0.179702 GCCCTAACCCTTTAGTCCCG 59.820 60.000 0.00 0.00 33.92 5.14
3990 4303 0.835276 CCCTAACCCTTTAGTCCCGG 59.165 60.000 0.00 0.00 33.92 5.73
3991 4304 1.576577 CCTAACCCTTTAGTCCCGGT 58.423 55.000 0.00 0.00 33.92 5.28
3992 4305 1.911357 CCTAACCCTTTAGTCCCGGTT 59.089 52.381 0.00 0.00 41.43 4.44
3993 4306 2.093288 CCTAACCCTTTAGTCCCGGTTC 60.093 54.545 0.00 0.00 39.33 3.62
3994 4307 1.738474 AACCCTTTAGTCCCGGTTCT 58.262 50.000 0.00 0.15 33.22 3.01
3995 4308 1.738474 ACCCTTTAGTCCCGGTTCTT 58.262 50.000 0.00 0.00 0.00 2.52
3996 4309 2.906568 ACCCTTTAGTCCCGGTTCTTA 58.093 47.619 0.00 0.00 0.00 2.10
3997 4310 2.568956 ACCCTTTAGTCCCGGTTCTTAC 59.431 50.000 0.00 0.00 0.00 2.34
3998 4311 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
3999 4312 3.199289 CCCTTTAGTCCCGGTTCTTACAT 59.801 47.826 0.00 0.00 0.00 2.29
4000 4313 4.189231 CCTTTAGTCCCGGTTCTTACATG 58.811 47.826 0.00 0.00 0.00 3.21
4001 4314 4.081309 CCTTTAGTCCCGGTTCTTACATGA 60.081 45.833 0.00 0.00 0.00 3.07
4002 4315 5.484715 CTTTAGTCCCGGTTCTTACATGAA 58.515 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.752187 AGGATTGTCATTTGCAGTGTTATTATT 58.248 29.630 0.00 0.00 0.00 1.40
10 11 8.192774 CAGGATTGTCATTTGCAGTGTTATTAT 58.807 33.333 0.00 0.00 0.00 1.28
11 12 7.392953 TCAGGATTGTCATTTGCAGTGTTATTA 59.607 33.333 0.00 0.00 0.00 0.98
12 13 6.209192 TCAGGATTGTCATTTGCAGTGTTATT 59.791 34.615 0.00 0.00 0.00 1.40
13 14 5.711506 TCAGGATTGTCATTTGCAGTGTTAT 59.288 36.000 0.00 0.00 0.00 1.89
14 15 5.069318 TCAGGATTGTCATTTGCAGTGTTA 58.931 37.500 0.00 0.00 0.00 2.41
15 16 3.890756 TCAGGATTGTCATTTGCAGTGTT 59.109 39.130 0.00 0.00 0.00 3.32
16 17 3.489355 TCAGGATTGTCATTTGCAGTGT 58.511 40.909 0.00 0.00 0.00 3.55
17 18 4.508461 TTCAGGATTGTCATTTGCAGTG 57.492 40.909 0.00 0.00 0.00 3.66
18 19 4.525487 ACATTCAGGATTGTCATTTGCAGT 59.475 37.500 0.00 0.00 0.00 4.40
19 20 4.862574 CACATTCAGGATTGTCATTTGCAG 59.137 41.667 0.00 0.00 0.00 4.41
20 21 4.811908 CACATTCAGGATTGTCATTTGCA 58.188 39.130 0.00 0.00 0.00 4.08
21 22 3.615496 GCACATTCAGGATTGTCATTTGC 59.385 43.478 0.00 0.00 0.00 3.68
22 23 3.855379 CGCACATTCAGGATTGTCATTTG 59.145 43.478 0.00 0.00 0.00 2.32
23 24 3.674138 GCGCACATTCAGGATTGTCATTT 60.674 43.478 0.30 0.00 0.00 2.32
29 30 0.179156 GTGGCGCACATTCAGGATTG 60.179 55.000 10.83 0.00 34.08 2.67
40 41 0.519961 ATTTTCGTAAGGTGGCGCAC 59.480 50.000 10.83 5.50 38.47 5.34
64 65 3.136123 CGCTTGGCACCCATCTGG 61.136 66.667 0.00 0.00 41.37 3.86
95 96 4.520111 CACACCATCAAACTCCAGATTTGA 59.480 41.667 2.89 2.89 46.96 2.69
153 154 2.507407 ACCAACGGTGAAGCCATTAT 57.493 45.000 0.00 0.00 32.98 1.28
197 198 1.610102 GGCTCCATCGCTGATATGCTT 60.610 52.381 0.00 0.00 0.00 3.91
334 337 6.204882 AGGACCGTCAAGAAAGAAAATTACAG 59.795 38.462 0.00 0.00 0.00 2.74
394 399 1.725164 GACATCGACCCGACAAAACTC 59.275 52.381 0.00 0.00 39.18 3.01
718 976 3.842923 CTGCGGCTCGGAGTGGAT 61.843 66.667 6.90 0.00 40.30 3.41
809 1068 1.095600 GAATTCGAAAGGGGGCTGTC 58.904 55.000 0.00 0.00 0.00 3.51
1183 1450 3.204526 CAGAAAAGCAATTTTGGCCACA 58.795 40.909 3.88 0.00 0.00 4.17
1188 1455 3.560896 CCACACCAGAAAAGCAATTTTGG 59.439 43.478 8.85 8.85 36.28 3.28
1202 1469 4.789012 ATTGTGCTATTTTCCACACCAG 57.211 40.909 0.00 0.00 41.26 4.00
1261 1528 5.752892 TCTAACATACAGCCTCGACTTAG 57.247 43.478 0.00 0.00 0.00 2.18
1267 1537 5.352284 AGTGATTTCTAACATACAGCCTCG 58.648 41.667 0.00 0.00 0.00 4.63
1293 1563 4.021916 CTGGCATGGAAGGAAGAGAAATT 58.978 43.478 0.00 0.00 0.00 1.82
1470 1740 7.394016 GGAACCAACCTTTATGGAAATTTCAT 58.606 34.615 19.49 12.81 40.56 2.57
1678 1963 2.294512 CTCAGCCAAACCAACCTTCTTC 59.705 50.000 0.00 0.00 0.00 2.87
1729 2014 3.405831 CATATCGTCATGGGTGCATCTT 58.594 45.455 0.00 0.00 0.00 2.40
1805 2090 1.730451 TTGAGTCGCGTGAGACCACA 61.730 55.000 5.77 0.00 43.34 4.17
1873 2158 2.979814 ACACCAGTCGCTTGCATATA 57.020 45.000 0.00 0.00 0.00 0.86
1913 2198 2.528564 CAAGGACATCAACCCCATGTT 58.471 47.619 0.00 0.00 34.49 2.71
2182 2467 7.889589 AACCTTTTCACTTTCAAAGTTCAAG 57.110 32.000 0.00 3.29 40.46 3.02
2213 2498 9.612066 TTATGTGCATCATCAACAATACTCTAA 57.388 29.630 5.25 0.00 37.91 2.10
2236 2529 4.640771 AGGCATGACCACGGAATATTAT 57.359 40.909 0.00 0.00 43.14 1.28
2385 2697 3.259374 TCCAAGTCAGATCACAGTCTTCC 59.741 47.826 0.00 0.00 0.00 3.46
2531 2843 8.389779 TGCAAGTTTTAGATGAGACAATACAA 57.610 30.769 0.00 0.00 0.00 2.41
2538 2850 3.726190 GCGCTGCAAGTTTTAGATGAGAC 60.726 47.826 0.00 0.00 35.30 3.36
2539 2851 2.416547 GCGCTGCAAGTTTTAGATGAGA 59.583 45.455 0.00 0.00 35.30 3.27
2540 2852 2.476854 GGCGCTGCAAGTTTTAGATGAG 60.477 50.000 7.64 0.00 35.30 2.90
2541 2853 1.468520 GGCGCTGCAAGTTTTAGATGA 59.531 47.619 7.64 0.00 35.30 2.92
2542 2854 1.791555 CGGCGCTGCAAGTTTTAGATG 60.792 52.381 7.64 0.00 35.30 2.90
2543 2855 0.447801 CGGCGCTGCAAGTTTTAGAT 59.552 50.000 7.64 0.00 35.30 1.98
2544 2856 1.866237 CGGCGCTGCAAGTTTTAGA 59.134 52.632 7.64 0.00 35.30 2.10
2545 2857 1.797537 GCGGCGCTGCAAGTTTTAG 60.798 57.895 35.40 0.30 35.30 1.85
2546 2858 2.254051 GCGGCGCTGCAAGTTTTA 59.746 55.556 35.40 0.00 35.30 1.52
2547 2859 3.898509 TGCGGCGCTGCAAGTTTT 61.899 55.556 40.05 0.00 43.02 2.43
2631 2943 1.837439 CAACAGTAGGCACCTATCCCA 59.163 52.381 0.00 0.00 0.00 4.37
2648 2960 2.362717 CCTCTCGGTCTTATCCCTCAAC 59.637 54.545 0.00 0.00 0.00 3.18
2649 2961 2.243994 TCCTCTCGGTCTTATCCCTCAA 59.756 50.000 0.00 0.00 0.00 3.02
2651 2963 2.660670 TCCTCTCGGTCTTATCCCTC 57.339 55.000 0.00 0.00 0.00 4.30
2705 3017 1.071471 CGTTTCCCACTCTGTGCCT 59.929 57.895 0.00 0.00 31.34 4.75
2744 3056 2.416747 CTGAGCACCGAAAGATTGTGA 58.583 47.619 0.00 0.00 31.66 3.58
2795 3107 3.007831 TGACAGCAGTGACATATTCCACA 59.992 43.478 0.00 0.00 35.84 4.17
2801 3113 4.449131 CTTCCATGACAGCAGTGACATAT 58.551 43.478 0.00 0.00 37.01 1.78
2828 3140 6.463614 GCAGGTATATGTCCTTCAGATTCACT 60.464 42.308 0.00 0.00 32.37 3.41
3091 3403 2.765122 GCAGCCTTGCCAAAATGTAAA 58.235 42.857 0.00 0.00 44.74 2.01
3246 3558 2.752903 GTTCGGAAATAAGTGGCATGGT 59.247 45.455 0.00 0.00 0.00 3.55
3701 4014 2.972625 TGAGATGCTTTGTACTTCCGG 58.027 47.619 0.00 0.00 0.00 5.14
3773 4086 4.373116 TCGGCTCGTTCTGGTGCC 62.373 66.667 0.00 0.00 41.76 5.01
3818 4131 3.383761 GACAAGGTTAAGTCGGTTTCGA 58.616 45.455 0.00 0.00 43.86 3.71
3879 4192 2.102588 CCCATTTCCTACTAGTGACCGG 59.897 54.545 5.39 0.00 0.00 5.28
3883 4196 3.130734 AGCCCCATTTCCTACTAGTGA 57.869 47.619 5.39 0.00 0.00 3.41
3884 4197 3.933861 AAGCCCCATTTCCTACTAGTG 57.066 47.619 5.39 0.00 0.00 2.74
3885 4198 4.948062 AAAAGCCCCATTTCCTACTAGT 57.052 40.909 0.00 0.00 0.00 2.57
3886 4199 5.131067 GGTAAAAGCCCCATTTCCTACTAG 58.869 45.833 0.00 0.00 0.00 2.57
3887 4200 4.079615 GGGTAAAAGCCCCATTTCCTACTA 60.080 45.833 0.00 0.00 42.89 1.82
3888 4201 3.309629 GGGTAAAAGCCCCATTTCCTACT 60.310 47.826 0.00 0.00 42.89 2.57
3889 4202 3.028850 GGGTAAAAGCCCCATTTCCTAC 58.971 50.000 0.00 0.00 42.89 3.18
3890 4203 3.391799 GGGTAAAAGCCCCATTTCCTA 57.608 47.619 0.00 0.00 42.89 2.94
3891 4204 2.247699 GGGTAAAAGCCCCATTTCCT 57.752 50.000 0.00 0.00 42.89 3.36
3900 4213 3.129813 CCTTACAAATCGGGGTAAAAGCC 59.870 47.826 0.00 0.00 34.31 4.35
3901 4214 3.129813 CCCTTACAAATCGGGGTAAAAGC 59.870 47.826 0.00 0.00 34.22 3.51
3902 4215 3.129813 GCCCTTACAAATCGGGGTAAAAG 59.870 47.826 0.00 0.00 40.86 2.27
3903 4216 3.090790 GCCCTTACAAATCGGGGTAAAA 58.909 45.455 0.00 0.00 40.86 1.52
3904 4217 2.621147 GGCCCTTACAAATCGGGGTAAA 60.621 50.000 0.00 0.00 40.86 2.01
3905 4218 1.064537 GGCCCTTACAAATCGGGGTAA 60.065 52.381 0.00 0.00 40.86 2.85
3906 4219 0.547553 GGCCCTTACAAATCGGGGTA 59.452 55.000 0.00 0.00 40.86 3.69
3907 4220 1.212250 AGGCCCTTACAAATCGGGGT 61.212 55.000 0.00 0.00 40.86 4.95
3908 4221 0.033503 AAGGCCCTTACAAATCGGGG 60.034 55.000 0.00 0.00 41.64 5.73
3909 4222 1.847328 AAAGGCCCTTACAAATCGGG 58.153 50.000 0.00 0.00 41.06 5.14
3910 4223 2.560981 ACAAAAGGCCCTTACAAATCGG 59.439 45.455 0.00 0.00 0.00 4.18
3911 4224 3.366985 GGACAAAAGGCCCTTACAAATCG 60.367 47.826 0.00 0.00 0.00 3.34
3912 4225 3.056107 GGGACAAAAGGCCCTTACAAATC 60.056 47.826 0.00 0.00 41.31 2.17
3913 4226 2.903784 GGGACAAAAGGCCCTTACAAAT 59.096 45.455 0.00 0.00 41.31 2.32
3914 4227 2.321719 GGGACAAAAGGCCCTTACAAA 58.678 47.619 0.00 0.00 41.31 2.83
3915 4228 1.820090 CGGGACAAAAGGCCCTTACAA 60.820 52.381 4.64 0.00 42.40 2.41
3916 4229 0.250989 CGGGACAAAAGGCCCTTACA 60.251 55.000 4.64 0.00 42.40 2.41
3917 4230 0.963856 CCGGGACAAAAGGCCCTTAC 60.964 60.000 4.64 0.00 42.40 2.34
3918 4231 1.381076 CCGGGACAAAAGGCCCTTA 59.619 57.895 4.64 0.00 42.40 2.69
3919 4232 2.117423 CCGGGACAAAAGGCCCTT 59.883 61.111 4.64 0.00 42.40 3.95
3920 4233 2.306715 AAACCGGGACAAAAGGCCCT 62.307 55.000 6.32 0.00 42.40 5.19
3921 4234 1.404479 AAAACCGGGACAAAAGGCCC 61.404 55.000 6.32 0.00 41.11 5.80
3922 4235 0.032952 GAAAACCGGGACAAAAGGCC 59.967 55.000 6.32 0.00 0.00 5.19
3923 4236 0.318360 CGAAAACCGGGACAAAAGGC 60.318 55.000 6.32 0.00 33.91 4.35
3924 4237 1.310904 TCGAAAACCGGGACAAAAGG 58.689 50.000 6.32 0.00 39.14 3.11
3925 4238 2.356695 AGTTCGAAAACCGGGACAAAAG 59.643 45.455 6.32 0.00 39.14 2.27
3926 4239 2.097791 CAGTTCGAAAACCGGGACAAAA 59.902 45.455 6.32 0.00 39.14 2.44
3927 4240 1.671845 CAGTTCGAAAACCGGGACAAA 59.328 47.619 6.32 0.00 39.14 2.83
3928 4241 1.301423 CAGTTCGAAAACCGGGACAA 58.699 50.000 6.32 0.00 39.14 3.18
3929 4242 0.533308 CCAGTTCGAAAACCGGGACA 60.533 55.000 6.32 0.00 39.14 4.02
3930 4243 2.241171 CCAGTTCGAAAACCGGGAC 58.759 57.895 6.32 0.00 39.14 4.46
3931 4244 4.783667 CCAGTTCGAAAACCGGGA 57.216 55.556 6.32 0.00 39.14 5.14
3932 4245 3.663202 CCCAGTTCGAAAACCGGG 58.337 61.111 6.32 3.62 44.72 5.73
3933 4246 0.250166 AGTCCCAGTTCGAAAACCGG 60.250 55.000 0.00 0.00 39.14 5.28
3934 4247 2.443887 TAGTCCCAGTTCGAAAACCG 57.556 50.000 0.00 0.00 35.92 4.44
3935 4248 3.501062 CCTTTAGTCCCAGTTCGAAAACC 59.499 47.826 0.00 0.00 35.92 3.27
3936 4249 3.501062 CCCTTTAGTCCCAGTTCGAAAAC 59.499 47.826 0.00 0.00 35.50 2.43
3937 4250 3.136992 ACCCTTTAGTCCCAGTTCGAAAA 59.863 43.478 0.00 0.00 0.00 2.29
3938 4251 2.707257 ACCCTTTAGTCCCAGTTCGAAA 59.293 45.455 0.00 0.00 0.00 3.46
3939 4252 2.301009 GACCCTTTAGTCCCAGTTCGAA 59.699 50.000 0.00 0.00 0.00 3.71
3940 4253 1.897802 GACCCTTTAGTCCCAGTTCGA 59.102 52.381 0.00 0.00 0.00 3.71
3941 4254 1.403780 CGACCCTTTAGTCCCAGTTCG 60.404 57.143 0.00 0.00 32.91 3.95
3942 4255 1.622312 ACGACCCTTTAGTCCCAGTTC 59.378 52.381 0.00 0.00 32.91 3.01
3943 4256 1.725803 ACGACCCTTTAGTCCCAGTT 58.274 50.000 0.00 0.00 32.91 3.16
3944 4257 1.725803 AACGACCCTTTAGTCCCAGT 58.274 50.000 0.00 0.00 32.91 4.00
3945 4258 2.830321 AGTAACGACCCTTTAGTCCCAG 59.170 50.000 0.00 0.00 32.91 4.45
3946 4259 2.893424 AGTAACGACCCTTTAGTCCCA 58.107 47.619 0.00 0.00 32.91 4.37
3947 4260 5.405935 TTTAGTAACGACCCTTTAGTCCC 57.594 43.478 0.00 0.00 32.91 4.46
3948 4261 4.867047 GCTTTAGTAACGACCCTTTAGTCC 59.133 45.833 0.00 0.00 32.91 3.85
3949 4262 4.867047 GGCTTTAGTAACGACCCTTTAGTC 59.133 45.833 0.00 0.00 0.00 2.59
3950 4263 4.323028 GGGCTTTAGTAACGACCCTTTAGT 60.323 45.833 0.00 0.00 34.34 2.24
3951 4264 4.081254 AGGGCTTTAGTAACGACCCTTTAG 60.081 45.833 7.64 0.00 45.55 1.85
3952 4265 3.840078 AGGGCTTTAGTAACGACCCTTTA 59.160 43.478 7.64 0.00 45.55 1.85
3953 4266 2.641321 AGGGCTTTAGTAACGACCCTTT 59.359 45.455 7.64 0.00 45.55 3.11
3954 4267 2.263545 AGGGCTTTAGTAACGACCCTT 58.736 47.619 7.64 0.00 45.55 3.95
3955 4268 1.948391 AGGGCTTTAGTAACGACCCT 58.052 50.000 7.64 10.62 42.97 4.34
3956 4269 3.525537 GTTAGGGCTTTAGTAACGACCC 58.474 50.000 7.64 8.73 37.63 4.46
3957 4270 3.525537 GGTTAGGGCTTTAGTAACGACC 58.474 50.000 2.95 2.95 0.00 4.79
3958 4271 3.196469 AGGGTTAGGGCTTTAGTAACGAC 59.804 47.826 0.00 0.00 0.00 4.34
3959 4272 3.444029 AGGGTTAGGGCTTTAGTAACGA 58.556 45.455 0.00 0.00 0.00 3.85
3960 4273 3.900966 AGGGTTAGGGCTTTAGTAACG 57.099 47.619 0.00 0.00 0.00 3.18
3961 4274 6.715280 ACTAAAGGGTTAGGGCTTTAGTAAC 58.285 40.000 5.23 0.00 45.23 2.50
3962 4275 6.070021 GGACTAAAGGGTTAGGGCTTTAGTAA 60.070 42.308 6.31 0.00 46.28 2.24
3963 4276 5.426509 GGACTAAAGGGTTAGGGCTTTAGTA 59.573 44.000 6.31 0.00 46.28 1.82
3965 4278 4.384978 GGGACTAAAGGGTTAGGGCTTTAG 60.385 50.000 1.97 1.97 41.03 1.85
3966 4279 3.524789 GGGACTAAAGGGTTAGGGCTTTA 59.475 47.826 0.00 0.00 41.03 1.85
3967 4280 2.310945 GGGACTAAAGGGTTAGGGCTTT 59.689 50.000 0.00 0.00 41.03 3.51
3968 4281 1.921049 GGGACTAAAGGGTTAGGGCTT 59.079 52.381 0.00 0.00 41.03 4.35
3969 4282 1.592948 GGGACTAAAGGGTTAGGGCT 58.407 55.000 0.00 0.00 41.03 5.19
3970 4283 0.179702 CGGGACTAAAGGGTTAGGGC 59.820 60.000 0.00 0.00 41.03 5.19
3971 4284 0.835276 CCGGGACTAAAGGGTTAGGG 59.165 60.000 0.00 0.00 41.03 3.53
3972 4285 1.576577 ACCGGGACTAAAGGGTTAGG 58.423 55.000 6.32 0.00 41.03 2.69
3973 4286 2.836372 AGAACCGGGACTAAAGGGTTAG 59.164 50.000 6.32 0.00 42.54 2.34
3974 4287 2.906568 AGAACCGGGACTAAAGGGTTA 58.093 47.619 6.32 0.00 42.54 2.85
3975 4288 1.738474 AGAACCGGGACTAAAGGGTT 58.262 50.000 6.32 0.00 45.02 4.11
3976 4289 1.738474 AAGAACCGGGACTAAAGGGT 58.262 50.000 6.32 0.00 0.00 4.34
3977 4290 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
3978 4291 3.967332 TGTAAGAACCGGGACTAAAGG 57.033 47.619 6.32 0.00 0.00 3.11
3979 4292 5.080969 TCATGTAAGAACCGGGACTAAAG 57.919 43.478 6.32 0.00 0.00 1.85
3980 4293 5.486735 TTCATGTAAGAACCGGGACTAAA 57.513 39.130 6.32 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.