Multiple sequence alignment - TraesCS6D01G391800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G391800 chr6D 100.000 3715 0 0 1 3715 466552924 466549210 0.000000e+00 6861.0
1 TraesCS6D01G391800 chr6D 90.713 1712 124 16 1070 2758 466544004 466545703 0.000000e+00 2248.0
2 TraesCS6D01G391800 chr6D 84.696 2091 195 54 977 2990 67326887 67324845 0.000000e+00 1973.0
3 TraesCS6D01G391800 chr6D 85.984 1534 165 16 1273 2765 466528246 466526722 0.000000e+00 1596.0
4 TraesCS6D01G391800 chr6D 83.483 333 37 10 1022 1339 466528671 466528342 1.010000e-75 294.0
5 TraesCS6D01G391800 chr6D 86.885 244 23 6 674 908 466541876 466542119 7.910000e-67 265.0
6 TraesCS6D01G391800 chr6D 85.650 223 26 3 133 355 439922790 439922574 2.890000e-56 230.0
7 TraesCS6D01G391800 chr6D 83.529 255 29 8 3012 3258 67324605 67324356 3.730000e-55 226.0
8 TraesCS6D01G391800 chr6D 91.176 102 9 0 970 1071 466542107 466542208 5.000000e-29 139.0
9 TraesCS6D01G391800 chr6D 82.424 165 22 6 540 701 439922697 439922537 1.800000e-28 137.0
10 TraesCS6D01G391800 chr6D 81.143 175 22 6 3 172 466541626 466541794 3.010000e-26 130.0
11 TraesCS6D01G391800 chr6D 87.037 108 7 6 595 700 440221463 440221361 8.430000e-22 115.0
12 TraesCS6D01G391800 chr6D 76.444 225 27 13 149 368 84083574 84083777 8.490000e-17 99.0
13 TraesCS6D01G391800 chr6D 80.597 134 19 6 552 682 440016067 440015938 3.050000e-16 97.1
14 TraesCS6D01G391800 chr6D 95.745 47 2 0 198 244 466541798 466541844 3.980000e-10 76.8
15 TraesCS6D01G391800 chr6B 96.566 2242 54 5 833 3053 711695282 711693043 0.000000e+00 3692.0
16 TraesCS6D01G391800 chr6B 91.004 1812 129 14 970 2758 711665148 711666948 0.000000e+00 2412.0
17 TraesCS6D01G391800 chr6B 81.078 1670 252 37 992 2619 95237723 95236076 0.000000e+00 1275.0
18 TraesCS6D01G391800 chr6B 86.859 1073 118 13 1681 2736 142099020 142097954 0.000000e+00 1179.0
19 TraesCS6D01G391800 chr6B 93.361 482 12 8 3070 3548 711692910 711692446 0.000000e+00 695.0
20 TraesCS6D01G391800 chr6B 96.450 169 5 1 3548 3715 711692340 711692172 1.020000e-70 278.0
21 TraesCS6D01G391800 chr6B 93.373 166 10 1 354 518 226362479 226362644 1.030000e-60 244.0
22 TraesCS6D01G391800 chr6B 81.212 165 24 6 540 701 665162839 665162679 3.900000e-25 126.0
23 TraesCS6D01G391800 chr6B 87.963 108 6 4 597 701 665418050 665417947 1.810000e-23 121.0
24 TraesCS6D01G391800 chr6B 81.818 154 19 5 3 155 711695572 711695427 1.810000e-23 121.0
25 TraesCS6D01G391800 chr6B 79.545 176 23 10 3 172 711664648 711664816 3.030000e-21 113.0
26 TraesCS6D01G391800 chr6B 83.673 98 13 3 255 352 159702207 159702301 5.110000e-14 89.8
27 TraesCS6D01G391800 chr6B 88.158 76 3 1 625 700 665426015 665425946 6.610000e-13 86.1
28 TraesCS6D01G391800 chr6B 92.453 53 2 2 3279 3331 142092143 142092093 1.430000e-09 75.0
29 TraesCS6D01G391800 chr6B 97.561 41 1 0 674 714 711695351 711695311 1.850000e-08 71.3
30 TraesCS6D01G391800 chr7A 82.448 1675 231 37 970 2605 219396795 219398445 0.000000e+00 1406.0
31 TraesCS6D01G391800 chr7A 86.143 1133 124 16 981 2090 668062045 668063167 0.000000e+00 1192.0
32 TraesCS6D01G391800 chr7A 81.461 178 27 5 674 850 219396525 219396697 1.390000e-29 141.0
33 TraesCS6D01G391800 chr7A 89.831 59 5 1 3594 3651 120747248 120747306 1.430000e-09 75.0
34 TraesCS6D01G391800 chr7A 89.831 59 5 1 3594 3651 120747836 120747894 1.430000e-09 75.0
35 TraesCS6D01G391800 chr2A 87.649 1174 104 19 969 2115 581965259 581964100 0.000000e+00 1327.0
36 TraesCS6D01G391800 chr2A 86.245 727 80 14 2132 2847 581963984 581963267 0.000000e+00 771.0
37 TraesCS6D01G391800 chr2A 85.019 267 28 9 91 351 639694143 639694403 1.020000e-65 261.0
38 TraesCS6D01G391800 chr2A 91.379 174 13 2 352 524 197662854 197662682 1.720000e-58 237.0
39 TraesCS6D01G391800 chr2A 80.597 201 23 11 3 203 581966172 581965988 1.390000e-29 141.0
40 TraesCS6D01G391800 chr2A 91.549 71 6 0 3581 3651 728612740 728612670 8.490000e-17 99.0
41 TraesCS6D01G391800 chr7D 87.446 1155 112 12 970 2097 576658075 576659223 0.000000e+00 1299.0
42 TraesCS6D01G391800 chr7D 84.138 725 95 14 2132 2844 576661160 576661876 0.000000e+00 684.0
43 TraesCS6D01G391800 chr7D 94.545 165 8 1 355 518 53572481 53572317 1.710000e-63 254.0
44 TraesCS6D01G391800 chr7D 89.691 97 8 1 257 351 576657618 576657714 5.040000e-24 122.0
45 TraesCS6D01G391800 chr5A 87.553 948 96 7 970 1898 46959425 46960369 0.000000e+00 1077.0
46 TraesCS6D01G391800 chr2B 82.302 1164 170 17 970 2112 246574644 246575792 0.000000e+00 976.0
47 TraesCS6D01G391800 chr2B 83.696 184 27 3 672 854 246574388 246574569 1.770000e-38 171.0
48 TraesCS6D01G391800 chr2B 83.495 103 11 5 568 668 246570433 246570531 1.420000e-14 91.6
49 TraesCS6D01G391800 chr6A 85.698 867 81 13 2139 2990 84698806 84697968 0.000000e+00 874.0
50 TraesCS6D01G391800 chr6A 83.636 220 30 3 133 351 588355413 588355199 6.290000e-48 202.0
51 TraesCS6D01G391800 chr6A 81.818 165 23 6 540 701 588355320 588355160 8.370000e-27 132.0
52 TraesCS6D01G391800 chr6A 89.888 89 8 1 156 244 588411320 588411233 3.030000e-21 113.0
53 TraesCS6D01G391800 chr1D 95.652 161 6 1 355 514 43123267 43123107 1.320000e-64 257.0
54 TraesCS6D01G391800 chr2D 93.567 171 10 1 352 521 559491873 559492043 1.710000e-63 254.0
55 TraesCS6D01G391800 chr2D 81.683 202 21 11 3 204 414974173 414973988 1.790000e-33 154.0
56 TraesCS6D01G391800 chr2D 88.793 116 9 3 257 368 414973978 414973863 5.000000e-29 139.0
57 TraesCS6D01G391800 chr1A 92.941 170 11 1 355 523 386384701 386384870 2.870000e-61 246.0
58 TraesCS6D01G391800 chr5D 92.899 169 10 2 351 518 84825538 84825371 1.030000e-60 244.0
59 TraesCS6D01G391800 chr5D 93.750 48 2 1 3603 3649 241841085 241841038 1.850000e-08 71.3
60 TraesCS6D01G391800 chrUn 93.333 165 10 1 355 518 74119451 74119615 3.710000e-60 243.0
61 TraesCS6D01G391800 chr5B 93.333 165 9 2 355 518 276913582 276913745 3.710000e-60 243.0
62 TraesCS6D01G391800 chr5B 92.857 70 5 0 3582 3651 476806668 476806599 6.560000e-18 102.0
63 TraesCS6D01G391800 chr5B 91.549 71 6 0 3581 3651 638835451 638835381 8.490000e-17 99.0
64 TraesCS6D01G391800 chr5B 93.617 47 2 1 3603 3648 256612487 256612441 6.660000e-08 69.4
65 TraesCS6D01G391800 chr4A 87.097 62 7 1 3591 3651 454815476 454815415 6.660000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G391800 chr6D 466549210 466552924 3714 True 6861.000000 6861 100.000000 1 3715 1 chr6D.!!$R3 3714
1 TraesCS6D01G391800 chr6D 67324356 67326887 2531 True 1099.500000 1973 84.112500 977 3258 2 chr6D.!!$R4 2281
2 TraesCS6D01G391800 chr6D 466526722 466528671 1949 True 945.000000 1596 84.733500 1022 2765 2 chr6D.!!$R6 1743
3 TraesCS6D01G391800 chr6D 466541626 466545703 4077 False 571.760000 2248 89.132400 3 2758 5 chr6D.!!$F2 2755
4 TraesCS6D01G391800 chr6B 95236076 95237723 1647 True 1275.000000 1275 81.078000 992 2619 1 chr6B.!!$R1 1627
5 TraesCS6D01G391800 chr6B 711664648 711666948 2300 False 1262.500000 2412 85.274500 3 2758 2 chr6B.!!$F3 2755
6 TraesCS6D01G391800 chr6B 142097954 142099020 1066 True 1179.000000 1179 86.859000 1681 2736 1 chr6B.!!$R3 1055
7 TraesCS6D01G391800 chr6B 711692172 711695572 3400 True 971.460000 3692 93.151200 3 3715 5 chr6B.!!$R7 3712
8 TraesCS6D01G391800 chr7A 668062045 668063167 1122 False 1192.000000 1192 86.143000 981 2090 1 chr7A.!!$F1 1109
9 TraesCS6D01G391800 chr7A 219396525 219398445 1920 False 773.500000 1406 81.954500 674 2605 2 chr7A.!!$F3 1931
10 TraesCS6D01G391800 chr2A 581963267 581966172 2905 True 746.333333 1327 84.830333 3 2847 3 chr2A.!!$R3 2844
11 TraesCS6D01G391800 chr7D 576657618 576661876 4258 False 701.666667 1299 87.091667 257 2844 3 chr7D.!!$F1 2587
12 TraesCS6D01G391800 chr5A 46959425 46960369 944 False 1077.000000 1077 87.553000 970 1898 1 chr5A.!!$F1 928
13 TraesCS6D01G391800 chr2B 246570433 246575792 5359 False 412.866667 976 83.164333 568 2112 3 chr2B.!!$F1 1544
14 TraesCS6D01G391800 chr6A 84697968 84698806 838 True 874.000000 874 85.698000 2139 2990 1 chr6A.!!$R1 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 568 0.178975 AATTGTGCAACCGGGGAAGA 60.179 50.000 6.32 0.0 34.36 2.87 F
564 576 0.340208 AACCGGGGAAGAGAGGAGAT 59.660 55.000 6.32 0.0 0.00 2.75 F
565 577 1.232909 ACCGGGGAAGAGAGGAGATA 58.767 55.000 6.32 0.0 0.00 1.98 F
2342 10613 1.074405 TCCCTCAAAGAGCTGTGCATT 59.926 47.619 0.00 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 10496 0.606401 GTTTGCTGAGCACAGGCCTA 60.606 55.000 6.64 0.0 43.62 3.93 R
2342 10613 3.181445 GGCACCAATGATCCCATACTGTA 60.181 47.826 0.00 0.0 31.59 2.74 R
2547 10820 3.193263 GCAGACATATCTCCGCCATATG 58.807 50.000 0.00 0.0 39.31 1.78 R
3271 11914 0.035881 TGCTGGACCTGAGCTTTCTG 59.964 55.000 1.91 0.0 37.35 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.322466 CCCCAGACCTGCCGTTCT 61.322 66.667 0.00 0.00 0.00 3.01
37 38 2.266055 CAGACCTGCCGTTCTCCC 59.734 66.667 0.00 0.00 0.00 4.30
40 41 2.529389 ACCTGCCGTTCTCCCCTT 60.529 61.111 0.00 0.00 0.00 3.95
60 61 1.304547 CCACCACGACTCTCCTCCT 60.305 63.158 0.00 0.00 0.00 3.69
62 63 0.322997 CACCACGACTCTCCTCCTCT 60.323 60.000 0.00 0.00 0.00 3.69
64 65 0.254747 CCACGACTCTCCTCCTCTCT 59.745 60.000 0.00 0.00 0.00 3.10
69 70 2.494059 GACTCTCCTCCTCTCTCATCG 58.506 57.143 0.00 0.00 0.00 3.84
71 72 0.548510 TCTCCTCCTCTCTCATCGCA 59.451 55.000 0.00 0.00 0.00 5.10
72 73 0.667993 CTCCTCCTCTCTCATCGCAC 59.332 60.000 0.00 0.00 0.00 5.34
73 74 0.753479 TCCTCCTCTCTCATCGCACC 60.753 60.000 0.00 0.00 0.00 5.01
74 75 1.739049 CTCCTCTCTCATCGCACCC 59.261 63.158 0.00 0.00 0.00 4.61
76 77 2.801631 CCTCTCTCATCGCACCCCC 61.802 68.421 0.00 0.00 0.00 5.40
147 151 2.527123 TTGCCACCACCTCCGGTA 60.527 61.111 0.00 0.00 37.07 4.02
190 199 2.599142 GCGTTTCGGGCGAAATAATCTC 60.599 50.000 0.00 0.00 44.52 2.75
191 200 2.347292 CGTTTCGGGCGAAATAATCTCG 60.347 50.000 0.00 0.00 44.52 4.04
203 212 0.661552 TAATCTCGCGGAAGACGGAG 59.338 55.000 6.13 0.00 44.51 4.63
244 253 0.960364 TTGTGCAATCGGGGAAGAGC 60.960 55.000 0.00 0.00 0.00 4.09
245 254 1.377202 GTGCAATCGGGGAAGAGCA 60.377 57.895 0.00 0.00 0.00 4.26
246 255 1.078214 TGCAATCGGGGAAGAGCAG 60.078 57.895 0.00 0.00 0.00 4.24
247 256 1.221840 GCAATCGGGGAAGAGCAGA 59.778 57.895 0.00 0.00 0.00 4.26
248 257 0.813210 GCAATCGGGGAAGAGCAGAG 60.813 60.000 0.00 0.00 0.00 3.35
249 258 0.179062 CAATCGGGGAAGAGCAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
252 261 0.683504 TCGGGGAAGAGCAGAGGTAC 60.684 60.000 0.00 0.00 0.00 3.34
253 262 0.970937 CGGGGAAGAGCAGAGGTACA 60.971 60.000 0.00 0.00 0.00 2.90
254 263 1.276622 GGGGAAGAGCAGAGGTACAA 58.723 55.000 0.00 0.00 0.00 2.41
255 264 1.840635 GGGGAAGAGCAGAGGTACAAT 59.159 52.381 0.00 0.00 0.00 2.71
272 281 0.665835 AATTTCTGTTCGTGCGGCAA 59.334 45.000 3.23 0.00 0.00 4.52
296 308 4.558697 GCGCAGTCCAAAAGGAGTAATTTT 60.559 41.667 0.30 0.00 0.00 1.82
297 309 5.528870 CGCAGTCCAAAAGGAGTAATTTTT 58.471 37.500 0.00 0.00 0.00 1.94
298 310 5.629435 CGCAGTCCAAAAGGAGTAATTTTTC 59.371 40.000 0.00 0.00 0.00 2.29
299 311 6.515035 CGCAGTCCAAAAGGAGTAATTTTTCT 60.515 38.462 0.00 0.00 0.00 2.52
300 312 7.210174 GCAGTCCAAAAGGAGTAATTTTTCTT 58.790 34.615 0.00 0.00 0.00 2.52
301 313 7.382488 GCAGTCCAAAAGGAGTAATTTTTCTTC 59.618 37.037 0.00 0.00 0.00 2.87
302 314 7.867909 CAGTCCAAAAGGAGTAATTTTTCTTCC 59.132 37.037 0.00 0.00 0.00 3.46
303 315 6.861572 GTCCAAAAGGAGTAATTTTTCTTCCG 59.138 38.462 0.00 0.00 0.00 4.30
304 316 6.015772 TCCAAAAGGAGTAATTTTTCTTCCGG 60.016 38.462 0.00 0.00 0.00 5.14
305 317 6.015772 CCAAAAGGAGTAATTTTTCTTCCGGA 60.016 38.462 0.00 0.00 0.00 5.14
306 318 6.819397 AAAGGAGTAATTTTTCTTCCGGAG 57.181 37.500 3.34 0.00 0.00 4.63
320 332 3.802613 CGGAGGAGTCTGTCTGTTG 57.197 57.895 0.00 0.00 0.00 3.33
321 333 1.248486 CGGAGGAGTCTGTCTGTTGA 58.752 55.000 0.00 0.00 0.00 3.18
322 334 1.201181 CGGAGGAGTCTGTCTGTTGAG 59.799 57.143 0.00 0.00 0.00 3.02
323 335 2.520069 GGAGGAGTCTGTCTGTTGAGA 58.480 52.381 0.00 0.00 0.00 3.27
324 336 2.894126 GGAGGAGTCTGTCTGTTGAGAA 59.106 50.000 0.00 0.00 0.00 2.87
325 337 3.056891 GGAGGAGTCTGTCTGTTGAGAAG 60.057 52.174 0.00 0.00 0.00 2.85
326 338 3.571590 AGGAGTCTGTCTGTTGAGAAGT 58.428 45.455 0.00 0.00 0.00 3.01
327 339 3.964031 AGGAGTCTGTCTGTTGAGAAGTT 59.036 43.478 0.00 0.00 0.00 2.66
328 340 4.038642 AGGAGTCTGTCTGTTGAGAAGTTC 59.961 45.833 0.00 0.00 0.00 3.01
329 341 4.038642 GGAGTCTGTCTGTTGAGAAGTTCT 59.961 45.833 4.68 4.68 0.00 3.01
330 342 5.241949 GGAGTCTGTCTGTTGAGAAGTTCTA 59.758 44.000 5.09 0.00 0.00 2.10
331 343 6.239064 GGAGTCTGTCTGTTGAGAAGTTCTAA 60.239 42.308 5.09 0.00 0.00 2.10
332 344 7.296628 AGTCTGTCTGTTGAGAAGTTCTAAT 57.703 36.000 5.09 0.00 0.00 1.73
333 345 7.375053 AGTCTGTCTGTTGAGAAGTTCTAATC 58.625 38.462 5.09 0.00 0.00 1.75
334 346 6.588373 GTCTGTCTGTTGAGAAGTTCTAATCC 59.412 42.308 5.09 0.00 0.00 3.01
335 347 5.470368 TGTCTGTTGAGAAGTTCTAATCCG 58.530 41.667 5.09 0.00 0.00 4.18
336 348 4.865365 GTCTGTTGAGAAGTTCTAATCCGG 59.135 45.833 5.09 0.00 0.00 5.14
337 349 4.770531 TCTGTTGAGAAGTTCTAATCCGGA 59.229 41.667 6.61 6.61 0.00 5.14
338 350 5.422331 TCTGTTGAGAAGTTCTAATCCGGAT 59.578 40.000 12.38 12.38 0.00 4.18
339 351 5.661458 TGTTGAGAAGTTCTAATCCGGATC 58.339 41.667 19.43 4.49 0.00 3.36
340 352 4.939052 TGAGAAGTTCTAATCCGGATCC 57.061 45.455 19.43 0.00 0.00 3.36
341 353 4.547671 TGAGAAGTTCTAATCCGGATCCT 58.452 43.478 19.43 5.51 0.00 3.24
342 354 5.702266 TGAGAAGTTCTAATCCGGATCCTA 58.298 41.667 19.43 6.54 0.00 2.94
343 355 5.535406 TGAGAAGTTCTAATCCGGATCCTAC 59.465 44.000 19.43 13.32 0.00 3.18
344 356 5.707495 AGAAGTTCTAATCCGGATCCTACT 58.293 41.667 19.43 15.31 0.00 2.57
345 357 5.771165 AGAAGTTCTAATCCGGATCCTACTC 59.229 44.000 19.43 8.86 0.00 2.59
346 358 4.409187 AGTTCTAATCCGGATCCTACTCC 58.591 47.826 19.43 3.00 0.00 3.85
347 359 4.106663 AGTTCTAATCCGGATCCTACTCCT 59.893 45.833 19.43 1.27 32.77 3.69
348 360 4.304048 TCTAATCCGGATCCTACTCCTC 57.696 50.000 19.43 0.00 32.77 3.71
349 361 3.917629 TCTAATCCGGATCCTACTCCTCT 59.082 47.826 19.43 0.00 32.77 3.69
350 362 2.891191 ATCCGGATCCTACTCCTCTC 57.109 55.000 12.38 0.00 32.77 3.20
351 363 1.822425 TCCGGATCCTACTCCTCTCT 58.178 55.000 10.75 0.00 32.77 3.10
352 364 2.987430 TCCGGATCCTACTCCTCTCTA 58.013 52.381 10.75 0.00 32.77 2.43
353 365 3.324689 TCCGGATCCTACTCCTCTCTAA 58.675 50.000 10.75 0.00 32.77 2.10
354 366 3.917629 TCCGGATCCTACTCCTCTCTAAT 59.082 47.826 10.75 0.00 32.77 1.73
355 367 5.099378 TCCGGATCCTACTCCTCTCTAATA 58.901 45.833 10.75 0.00 32.77 0.98
356 368 5.045724 TCCGGATCCTACTCCTCTCTAATAC 60.046 48.000 10.75 0.00 32.77 1.89
357 369 5.045432 CCGGATCCTACTCCTCTCTAATACT 60.045 48.000 10.75 0.00 32.77 2.12
358 370 6.110707 CGGATCCTACTCCTCTCTAATACTC 58.889 48.000 10.75 0.00 32.77 2.59
359 371 6.420638 GGATCCTACTCCTCTCTAATACTCC 58.579 48.000 3.84 0.00 32.18 3.85
360 372 5.846528 TCCTACTCCTCTCTAATACTCCC 57.153 47.826 0.00 0.00 0.00 4.30
361 373 5.488215 TCCTACTCCTCTCTAATACTCCCT 58.512 45.833 0.00 0.00 0.00 4.20
362 374 5.548836 TCCTACTCCTCTCTAATACTCCCTC 59.451 48.000 0.00 0.00 0.00 4.30
363 375 4.734843 ACTCCTCTCTAATACTCCCTCC 57.265 50.000 0.00 0.00 0.00 4.30
364 376 3.073356 ACTCCTCTCTAATACTCCCTCCG 59.927 52.174 0.00 0.00 0.00 4.63
365 377 3.054576 TCCTCTCTAATACTCCCTCCGT 58.945 50.000 0.00 0.00 0.00 4.69
366 378 3.462579 TCCTCTCTAATACTCCCTCCGTT 59.537 47.826 0.00 0.00 0.00 4.44
367 379 4.079327 TCCTCTCTAATACTCCCTCCGTTT 60.079 45.833 0.00 0.00 0.00 3.60
368 380 4.278919 CCTCTCTAATACTCCCTCCGTTTC 59.721 50.000 0.00 0.00 0.00 2.78
369 381 5.126699 TCTCTAATACTCCCTCCGTTTCT 57.873 43.478 0.00 0.00 0.00 2.52
370 382 6.257994 TCTCTAATACTCCCTCCGTTTCTA 57.742 41.667 0.00 0.00 0.00 2.10
371 383 6.666678 TCTCTAATACTCCCTCCGTTTCTAA 58.333 40.000 0.00 0.00 0.00 2.10
372 384 7.121382 TCTCTAATACTCCCTCCGTTTCTAAA 58.879 38.462 0.00 0.00 0.00 1.85
373 385 7.783596 TCTCTAATACTCCCTCCGTTTCTAAAT 59.216 37.037 0.00 0.00 0.00 1.40
374 386 9.075678 CTCTAATACTCCCTCCGTTTCTAAATA 57.924 37.037 0.00 0.00 0.00 1.40
375 387 9.597681 TCTAATACTCCCTCCGTTTCTAAATAT 57.402 33.333 0.00 0.00 0.00 1.28
378 390 8.904099 ATACTCCCTCCGTTTCTAAATATTTG 57.096 34.615 11.05 1.65 0.00 2.32
379 391 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
380 392 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
381 393 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
382 394 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
383 395 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
384 396 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
408 420 9.554395 TTTAGACATTTCAAACAGACTATCACA 57.446 29.630 0.00 0.00 0.00 3.58
409 421 9.725019 TTAGACATTTCAAACAGACTATCACAT 57.275 29.630 0.00 0.00 0.00 3.21
411 423 9.155975 AGACATTTCAAACAGACTATCACATAC 57.844 33.333 0.00 0.00 0.00 2.39
412 424 7.963981 ACATTTCAAACAGACTATCACATACG 58.036 34.615 0.00 0.00 0.00 3.06
413 425 6.961359 TTTCAAACAGACTATCACATACGG 57.039 37.500 0.00 0.00 0.00 4.02
414 426 5.907866 TCAAACAGACTATCACATACGGA 57.092 39.130 0.00 0.00 0.00 4.69
415 427 6.465439 TCAAACAGACTATCACATACGGAT 57.535 37.500 0.00 0.00 0.00 4.18
416 428 6.273071 TCAAACAGACTATCACATACGGATG 58.727 40.000 5.94 5.94 39.16 3.51
418 430 6.954487 AACAGACTATCACATACGGATGTA 57.046 37.500 14.23 2.61 44.82 2.29
419 431 7.526142 AACAGACTATCACATACGGATGTAT 57.474 36.000 14.23 10.02 44.82 2.29
437 449 9.077674 CGGATGTATGTAGACATATTTTAGAGC 57.922 37.037 5.69 0.00 40.18 4.09
438 450 9.077674 GGATGTATGTAGACATATTTTAGAGCG 57.922 37.037 5.69 0.00 40.18 5.03
439 451 9.627395 GATGTATGTAGACATATTTTAGAGCGT 57.373 33.333 5.69 0.00 40.18 5.07
445 457 9.894783 TGTAGACATATTTTAGAGCGTAGATTC 57.105 33.333 0.00 0.00 0.00 2.52
446 458 9.894783 GTAGACATATTTTAGAGCGTAGATTCA 57.105 33.333 0.00 0.00 0.00 2.57
447 459 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
448 460 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
449 461 9.250624 GACATATTTTAGAGCGTAGATTCACTT 57.749 33.333 0.00 0.00 0.00 3.16
458 470 8.859517 AGAGCGTAGATTCACTTATTTTACTC 57.140 34.615 0.00 0.00 0.00 2.59
459 471 7.921745 AGAGCGTAGATTCACTTATTTTACTCC 59.078 37.037 0.00 0.00 0.00 3.85
460 472 6.696148 AGCGTAGATTCACTTATTTTACTCCG 59.304 38.462 0.00 0.00 0.00 4.63
461 473 6.474751 GCGTAGATTCACTTATTTTACTCCGT 59.525 38.462 0.00 0.00 0.00 4.69
462 474 7.645340 GCGTAGATTCACTTATTTTACTCCGTA 59.355 37.037 0.00 0.00 0.00 4.02
463 475 9.674824 CGTAGATTCACTTATTTTACTCCGTAT 57.325 33.333 0.00 0.00 0.00 3.06
469 481 9.793252 TTCACTTATTTTACTCCGTATGTAGTC 57.207 33.333 0.00 0.00 0.00 2.59
470 482 8.959548 TCACTTATTTTACTCCGTATGTAGTCA 58.040 33.333 0.00 0.00 0.00 3.41
471 483 9.745880 CACTTATTTTACTCCGTATGTAGTCAT 57.254 33.333 0.00 0.00 38.00 3.06
476 488 8.836268 TTTTACTCCGTATGTAGTCATTTGTT 57.164 30.769 0.00 0.00 35.70 2.83
477 489 7.821595 TTACTCCGTATGTAGTCATTTGTTG 57.178 36.000 0.00 0.00 35.70 3.33
478 490 6.032956 ACTCCGTATGTAGTCATTTGTTGA 57.967 37.500 0.00 0.00 35.70 3.18
479 491 6.460781 ACTCCGTATGTAGTCATTTGTTGAA 58.539 36.000 0.00 0.00 35.70 2.69
480 492 6.932400 ACTCCGTATGTAGTCATTTGTTGAAA 59.068 34.615 0.00 0.00 35.70 2.69
481 493 7.606456 ACTCCGTATGTAGTCATTTGTTGAAAT 59.394 33.333 0.00 0.00 35.70 2.17
482 494 9.093970 CTCCGTATGTAGTCATTTGTTGAAATA 57.906 33.333 0.00 0.00 35.70 1.40
483 495 9.607988 TCCGTATGTAGTCATTTGTTGAAATAT 57.392 29.630 0.00 0.00 35.70 1.28
484 496 9.650371 CCGTATGTAGTCATTTGTTGAAATATG 57.350 33.333 0.00 0.00 35.70 1.78
512 524 9.908152 AGAAAGACAAATATTTAAAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
513 525 9.135843 GAAAGACAAATATTTAAAAACGGAGGG 57.864 33.333 0.00 0.00 0.00 4.30
514 526 8.411991 AAGACAAATATTTAAAAACGGAGGGA 57.588 30.769 0.00 0.00 0.00 4.20
515 527 8.051901 AGACAAATATTTAAAAACGGAGGGAG 57.948 34.615 0.00 0.00 0.00 4.30
516 528 7.668469 AGACAAATATTTAAAAACGGAGGGAGT 59.332 33.333 0.00 0.00 0.00 3.85
517 529 8.866970 ACAAATATTTAAAAACGGAGGGAGTA 57.133 30.769 0.00 0.00 0.00 2.59
518 530 8.733458 ACAAATATTTAAAAACGGAGGGAGTAC 58.267 33.333 0.00 0.00 0.00 2.73
519 531 8.953313 CAAATATTTAAAAACGGAGGGAGTACT 58.047 33.333 0.00 0.00 0.00 2.73
522 534 9.993454 ATATTTAAAAACGGAGGGAGTACTATC 57.007 33.333 0.00 0.00 0.00 2.08
523 535 4.750021 AAAAACGGAGGGAGTACTATCC 57.250 45.455 0.00 3.21 38.76 2.59
524 536 3.684408 AAACGGAGGGAGTACTATCCT 57.316 47.619 14.97 14.97 39.50 3.24
525 537 3.684408 AACGGAGGGAGTACTATCCTT 57.316 47.619 15.86 6.58 39.50 3.36
526 538 3.226682 ACGGAGGGAGTACTATCCTTC 57.773 52.381 15.86 13.56 43.09 3.46
532 544 5.919755 GAGGGAGTACTATCCTTCCTTTTG 58.080 45.833 15.86 0.00 38.10 2.44
533 545 5.351405 AGGGAGTACTATCCTTCCTTTTGT 58.649 41.667 10.55 0.00 33.92 2.83
534 546 6.509386 AGGGAGTACTATCCTTCCTTTTGTA 58.491 40.000 10.55 0.00 33.92 2.41
535 547 6.612049 AGGGAGTACTATCCTTCCTTTTGTAG 59.388 42.308 10.55 0.00 33.92 2.74
536 548 6.183360 GGGAGTACTATCCTTCCTTTTGTAGG 60.183 46.154 0.00 0.00 41.32 3.18
537 549 8.297825 GGGAGTACTATCCTTCCTTTTGTAGGA 61.298 44.444 0.00 0.00 43.88 2.94
549 561 3.634568 TTTGTAGGAATTGTGCAACCG 57.365 42.857 0.00 0.00 34.36 4.44
550 562 1.529226 TGTAGGAATTGTGCAACCGG 58.471 50.000 0.00 0.00 34.36 5.28
551 563 0.808755 GTAGGAATTGTGCAACCGGG 59.191 55.000 6.32 0.00 34.36 5.73
552 564 0.322997 TAGGAATTGTGCAACCGGGG 60.323 55.000 6.32 0.00 34.36 5.73
553 565 1.605165 GGAATTGTGCAACCGGGGA 60.605 57.895 6.32 0.00 34.36 4.81
554 566 1.182385 GGAATTGTGCAACCGGGGAA 61.182 55.000 6.32 0.00 34.36 3.97
555 567 0.243636 GAATTGTGCAACCGGGGAAG 59.756 55.000 6.32 0.00 34.36 3.46
556 568 0.178975 AATTGTGCAACCGGGGAAGA 60.179 50.000 6.32 0.00 34.36 2.87
557 569 0.609131 ATTGTGCAACCGGGGAAGAG 60.609 55.000 6.32 0.00 34.36 2.85
558 570 1.701031 TTGTGCAACCGGGGAAGAGA 61.701 55.000 6.32 0.00 34.36 3.10
559 571 1.376037 GTGCAACCGGGGAAGAGAG 60.376 63.158 6.32 0.00 0.00 3.20
560 572 2.269241 GCAACCGGGGAAGAGAGG 59.731 66.667 6.32 0.00 0.00 3.69
561 573 2.291043 GCAACCGGGGAAGAGAGGA 61.291 63.158 6.32 0.00 0.00 3.71
562 574 1.901085 CAACCGGGGAAGAGAGGAG 59.099 63.158 6.32 0.00 0.00 3.69
563 575 0.614979 CAACCGGGGAAGAGAGGAGA 60.615 60.000 6.32 0.00 0.00 3.71
564 576 0.340208 AACCGGGGAAGAGAGGAGAT 59.660 55.000 6.32 0.00 0.00 2.75
565 577 1.232909 ACCGGGGAAGAGAGGAGATA 58.767 55.000 6.32 0.00 0.00 1.98
566 578 1.574339 ACCGGGGAAGAGAGGAGATAA 59.426 52.381 6.32 0.00 0.00 1.75
567 579 2.023307 ACCGGGGAAGAGAGGAGATAAA 60.023 50.000 6.32 0.00 0.00 1.40
568 580 3.243724 CCGGGGAAGAGAGGAGATAAAT 58.756 50.000 0.00 0.00 0.00 1.40
569 581 3.648545 CCGGGGAAGAGAGGAGATAAATT 59.351 47.826 0.00 0.00 0.00 1.82
570 582 4.103311 CCGGGGAAGAGAGGAGATAAATTT 59.897 45.833 0.00 0.00 0.00 1.82
571 583 5.307196 CCGGGGAAGAGAGGAGATAAATTTA 59.693 44.000 0.00 0.00 0.00 1.40
572 584 6.013293 CCGGGGAAGAGAGGAGATAAATTTAT 60.013 42.308 10.51 10.51 0.00 1.40
581 593 7.697691 AGAGGAGATAAATTTATGTTTGTGCG 58.302 34.615 15.39 0.00 0.00 5.34
586 598 4.988708 AAATTTATGTTTGTGCGGCAAG 57.011 36.364 3.23 0.00 38.47 4.01
604 616 4.181578 GCAAGCGTAATCTGAAAGGAGTA 58.818 43.478 0.00 0.00 0.00 2.59
605 617 4.811557 GCAAGCGTAATCTGAAAGGAGTAT 59.188 41.667 0.00 0.00 0.00 2.12
681 716 4.544152 CCTCTCCTCTAATATCTCCTCCCT 59.456 50.000 0.00 0.00 0.00 4.20
739 4971 3.931578 CTCAATAAATAGAGGAGCGGGG 58.068 50.000 0.00 0.00 0.00 5.73
795 5027 3.278574 TGGCGTCCCTGATCTTATTTTG 58.721 45.455 0.00 0.00 0.00 2.44
823 5055 3.433274 CGATTAGTCTGCTTTCTTGTGCA 59.567 43.478 0.00 0.00 37.63 4.57
824 5056 4.083855 CGATTAGTCTGCTTTCTTGTGCAA 60.084 41.667 0.00 0.00 38.81 4.08
830 5062 2.490903 CTGCTTTCTTGTGCAAGCCTAT 59.509 45.455 7.03 0.00 44.15 2.57
832 5064 4.078537 TGCTTTCTTGTGCAAGCCTATAA 58.921 39.130 7.03 0.00 44.15 0.98
834 5066 5.185635 TGCTTTCTTGTGCAAGCCTATAAAT 59.814 36.000 7.03 0.00 44.15 1.40
836 5068 7.093988 TGCTTTCTTGTGCAAGCCTATAAATAA 60.094 33.333 7.03 0.00 44.15 1.40
838 5070 9.807649 CTTTCTTGTGCAAGCCTATAAATAAAT 57.192 29.630 7.03 0.00 38.28 1.40
957 5241 1.930656 CCTCCCCATCACCCCACTT 60.931 63.158 0.00 0.00 0.00 3.16
967 5251 2.857483 TCACCCCACTTACATTGTGTG 58.143 47.619 0.00 0.00 33.92 3.82
1677 8019 2.493278 GCTGTGCAATATGAGGTTTGGT 59.507 45.455 0.00 0.00 0.00 3.67
1678 8020 3.674138 GCTGTGCAATATGAGGTTTGGTG 60.674 47.826 0.00 0.00 0.00 4.17
1679 8021 2.824936 TGTGCAATATGAGGTTTGGTGG 59.175 45.455 0.00 0.00 0.00 4.61
1752 8097 2.073816 CGTTTAACCCATTGCGACTCT 58.926 47.619 0.00 0.00 0.00 3.24
2278 10549 4.771114 TTCTGGACAAACTTCCTGAAGA 57.229 40.909 13.58 0.00 44.39 2.87
2342 10613 1.074405 TCCCTCAAAGAGCTGTGCATT 59.926 47.619 0.00 0.00 0.00 3.56
2449 10722 3.455469 GAAGCCACATGCCCCTGC 61.455 66.667 0.00 0.00 42.71 4.85
2673 10952 3.360533 CGCATGCAGATCATTGAAGAAC 58.639 45.455 19.57 0.00 31.79 3.01
2778 11061 3.198853 AGCCCTCTGAACTCTGTAATTCC 59.801 47.826 0.00 0.00 0.00 3.01
2980 11276 3.996480 ACAAGTTAGACCTGCTCACTTC 58.004 45.455 0.00 0.00 38.64 3.01
2997 11293 6.500684 TCACTTCATCTTTATGGTTCTTGC 57.499 37.500 0.00 0.00 33.61 4.01
3047 11562 6.633856 AGTTCTTGCTCAAACACTTTTTCAT 58.366 32.000 0.00 0.00 0.00 2.57
3128 11764 4.941263 CGTCAGTTCTGGGGATGATTTTTA 59.059 41.667 0.00 0.00 0.00 1.52
3236 11879 6.713450 TCAACAAAGGTAACCTGGTAGATTTC 59.287 38.462 0.00 0.00 32.13 2.17
3268 11911 0.683504 TAAGGAGCCTCCCACGAGAC 60.684 60.000 7.26 0.00 37.19 3.36
3271 11914 1.079750 GAGCCTCCCACGAGACAAC 60.080 63.158 0.00 0.00 38.52 3.32
3290 11933 0.035881 CAGAAAGCTCAGGTCCAGCA 59.964 55.000 4.15 0.00 39.56 4.41
3323 11966 9.845740 TTTACAGCAGCTATTCTTAAATATCCA 57.154 29.630 0.00 0.00 0.00 3.41
3324 11967 9.845740 TTACAGCAGCTATTCTTAAATATCCAA 57.154 29.630 0.00 0.00 0.00 3.53
3325 11968 8.752005 ACAGCAGCTATTCTTAAATATCCAAA 57.248 30.769 0.00 0.00 0.00 3.28
3326 11969 8.844244 ACAGCAGCTATTCTTAAATATCCAAAG 58.156 33.333 0.00 0.00 0.00 2.77
3327 11970 8.844244 CAGCAGCTATTCTTAAATATCCAAAGT 58.156 33.333 0.00 0.00 0.00 2.66
3328 11971 9.413734 AGCAGCTATTCTTAAATATCCAAAGTT 57.586 29.630 0.00 0.00 0.00 2.66
3373 12016 2.950309 CCATCAGCAAGAAATCTCCCTG 59.050 50.000 0.00 4.71 0.00 4.45
3377 12020 0.455005 GCAAGAAATCTCCCTGCAGC 59.545 55.000 8.66 0.00 33.20 5.25
3381 12024 3.097342 AGAAATCTCCCTGCAGCAAAT 57.903 42.857 8.66 0.00 0.00 2.32
3454 12097 0.039256 TTGAGCCTGCGAAAATGCAC 60.039 50.000 0.00 0.00 40.62 4.57
3494 12137 5.163683 CCATTGCTCCAGTTATCAGACAAAG 60.164 44.000 0.00 0.00 0.00 2.77
3501 12144 7.650104 GCTCCAGTTATCAGACAAAGATAGTAC 59.350 40.741 0.00 0.00 30.32 2.73
3577 12327 4.249661 TGAAAAACAAACAAGCCCACTTC 58.750 39.130 0.00 0.00 32.29 3.01
3632 12382 7.549134 CCATGGAGGCCTTAATTTAAAAACTTC 59.451 37.037 6.77 0.00 0.00 3.01
3680 12430 0.827507 TTTTGAAGGTGGCTGGAGGC 60.828 55.000 0.00 0.00 41.50 4.70
3682 12432 4.785453 GAAGGTGGCTGGAGGCGG 62.785 72.222 0.00 0.00 44.42 6.13
3711 12461 4.304110 GAAGACGTACACTTTGATGTCCA 58.696 43.478 0.00 0.00 33.85 4.02
3712 12462 3.650139 AGACGTACACTTTGATGTCCAC 58.350 45.455 0.00 0.00 33.85 4.02
3713 12463 3.069016 AGACGTACACTTTGATGTCCACA 59.931 43.478 0.00 0.00 33.85 4.17
3714 12464 3.994392 GACGTACACTTTGATGTCCACAT 59.006 43.478 0.00 0.00 39.70 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.901797 GAACGGCAGGTCTGGGGTG 62.902 68.421 0.00 0.00 0.00 4.61
22 23 2.593956 AAGGGGAGAACGGCAGGTC 61.594 63.158 0.00 0.00 0.00 3.85
34 35 3.948719 GTCGTGGTGGCAAGGGGA 61.949 66.667 0.00 0.00 0.00 4.81
37 38 1.374758 GAGAGTCGTGGTGGCAAGG 60.375 63.158 0.00 0.00 0.00 3.61
40 41 2.203640 AGGAGAGTCGTGGTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
193 202 3.839432 CTCCCGCCTCCGTCTTCC 61.839 72.222 0.00 0.00 0.00 3.46
194 203 2.286127 CTTCTCCCGCCTCCGTCTTC 62.286 65.000 0.00 0.00 0.00 2.87
195 204 2.283676 TTCTCCCGCCTCCGTCTT 60.284 61.111 0.00 0.00 0.00 3.01
196 205 2.756283 CTTCTCCCGCCTCCGTCT 60.756 66.667 0.00 0.00 0.00 4.18
203 212 2.010497 GAAATCAACTCTTCTCCCGCC 58.990 52.381 0.00 0.00 0.00 6.13
244 253 4.377431 GCACGAACAGAAATTGTACCTCTG 60.377 45.833 3.10 3.10 39.73 3.35
245 254 3.746492 GCACGAACAGAAATTGTACCTCT 59.254 43.478 0.00 0.00 39.73 3.69
246 255 3.423123 CGCACGAACAGAAATTGTACCTC 60.423 47.826 0.00 0.00 39.73 3.85
247 256 2.478894 CGCACGAACAGAAATTGTACCT 59.521 45.455 0.00 0.00 39.73 3.08
248 257 2.412325 CCGCACGAACAGAAATTGTACC 60.412 50.000 0.00 0.00 39.73 3.34
249 258 2.834689 CCGCACGAACAGAAATTGTAC 58.165 47.619 0.00 0.00 39.73 2.90
252 261 0.040514 TGCCGCACGAACAGAAATTG 60.041 50.000 0.00 0.00 0.00 2.32
253 262 0.665835 TTGCCGCACGAACAGAAATT 59.334 45.000 0.00 0.00 0.00 1.82
254 263 0.238289 CTTGCCGCACGAACAGAAAT 59.762 50.000 0.00 0.00 0.00 2.17
255 264 1.646540 CTTGCCGCACGAACAGAAA 59.353 52.632 0.00 0.00 0.00 2.52
272 281 0.685097 TACTCCTTTTGGACTGCGCT 59.315 50.000 9.73 0.00 45.19 5.92
296 308 1.075698 AGACAGACTCCTCCGGAAGAA 59.924 52.381 5.23 0.00 0.00 2.52
297 309 0.699399 AGACAGACTCCTCCGGAAGA 59.301 55.000 5.23 3.48 0.00 2.87
298 310 0.814457 CAGACAGACTCCTCCGGAAG 59.186 60.000 5.23 3.05 0.00 3.46
299 311 0.112606 ACAGACAGACTCCTCCGGAA 59.887 55.000 5.23 0.00 0.00 4.30
300 312 0.112606 AACAGACAGACTCCTCCGGA 59.887 55.000 2.93 2.93 0.00 5.14
301 313 0.244994 CAACAGACAGACTCCTCCGG 59.755 60.000 0.00 0.00 0.00 5.14
302 314 1.201181 CTCAACAGACAGACTCCTCCG 59.799 57.143 0.00 0.00 0.00 4.63
303 315 2.520069 TCTCAACAGACAGACTCCTCC 58.480 52.381 0.00 0.00 0.00 4.30
304 316 3.572255 ACTTCTCAACAGACAGACTCCTC 59.428 47.826 0.00 0.00 0.00 3.71
305 317 3.571590 ACTTCTCAACAGACAGACTCCT 58.428 45.455 0.00 0.00 0.00 3.69
306 318 4.038642 AGAACTTCTCAACAGACAGACTCC 59.961 45.833 0.00 0.00 0.00 3.85
307 319 5.195001 AGAACTTCTCAACAGACAGACTC 57.805 43.478 0.00 0.00 0.00 3.36
308 320 6.716934 TTAGAACTTCTCAACAGACAGACT 57.283 37.500 0.00 0.00 0.00 3.24
309 321 6.588373 GGATTAGAACTTCTCAACAGACAGAC 59.412 42.308 0.00 0.00 0.00 3.51
310 322 6.570571 CGGATTAGAACTTCTCAACAGACAGA 60.571 42.308 0.00 0.00 0.00 3.41
311 323 5.574830 CGGATTAGAACTTCTCAACAGACAG 59.425 44.000 0.00 0.00 0.00 3.51
312 324 5.470368 CGGATTAGAACTTCTCAACAGACA 58.530 41.667 0.00 0.00 0.00 3.41
313 325 4.865365 CCGGATTAGAACTTCTCAACAGAC 59.135 45.833 0.00 0.00 0.00 3.51
314 326 4.770531 TCCGGATTAGAACTTCTCAACAGA 59.229 41.667 0.00 0.00 0.00 3.41
315 327 5.073311 TCCGGATTAGAACTTCTCAACAG 57.927 43.478 0.00 0.00 0.00 3.16
316 328 5.395324 GGATCCGGATTAGAACTTCTCAACA 60.395 44.000 20.22 0.00 0.00 3.33
317 329 5.051153 GGATCCGGATTAGAACTTCTCAAC 58.949 45.833 20.22 0.00 0.00 3.18
318 330 4.962995 AGGATCCGGATTAGAACTTCTCAA 59.037 41.667 20.22 0.00 0.00 3.02
319 331 4.547671 AGGATCCGGATTAGAACTTCTCA 58.452 43.478 20.22 0.00 0.00 3.27
320 332 5.771165 AGTAGGATCCGGATTAGAACTTCTC 59.229 44.000 20.22 1.67 0.00 2.87
321 333 5.707495 AGTAGGATCCGGATTAGAACTTCT 58.293 41.667 20.22 11.74 0.00 2.85
322 334 5.047872 GGAGTAGGATCCGGATTAGAACTTC 60.048 48.000 20.22 14.30 0.00 3.01
323 335 4.833938 GGAGTAGGATCCGGATTAGAACTT 59.166 45.833 20.22 4.07 0.00 2.66
324 336 4.106663 AGGAGTAGGATCCGGATTAGAACT 59.893 45.833 20.22 18.50 44.65 3.01
325 337 4.409187 AGGAGTAGGATCCGGATTAGAAC 58.591 47.826 20.22 14.22 44.65 3.01
326 338 4.354387 AGAGGAGTAGGATCCGGATTAGAA 59.646 45.833 20.22 1.84 44.65 2.10
327 339 3.917629 AGAGGAGTAGGATCCGGATTAGA 59.082 47.826 20.22 3.55 44.65 2.10
328 340 4.018779 AGAGAGGAGTAGGATCCGGATTAG 60.019 50.000 20.22 0.00 44.65 1.73
329 341 3.917629 AGAGAGGAGTAGGATCCGGATTA 59.082 47.826 20.22 4.91 44.65 1.75
330 342 2.719705 AGAGAGGAGTAGGATCCGGATT 59.280 50.000 20.22 6.08 44.65 3.01
331 343 2.354328 AGAGAGGAGTAGGATCCGGAT 58.646 52.381 19.21 19.21 44.65 4.18
332 344 1.822425 AGAGAGGAGTAGGATCCGGA 58.178 55.000 6.61 6.61 44.65 5.14
333 345 3.791953 TTAGAGAGGAGTAGGATCCGG 57.208 52.381 5.98 0.00 44.65 5.14
334 346 6.057321 AGTATTAGAGAGGAGTAGGATCCG 57.943 45.833 5.98 0.00 44.65 4.18
335 347 6.420638 GGAGTATTAGAGAGGAGTAGGATCC 58.579 48.000 2.48 2.48 39.89 3.36
336 348 6.216868 AGGGAGTATTAGAGAGGAGTAGGATC 59.783 46.154 0.00 0.00 0.00 3.36
337 349 6.102616 AGGGAGTATTAGAGAGGAGTAGGAT 58.897 44.000 0.00 0.00 0.00 3.24
338 350 5.488215 AGGGAGTATTAGAGAGGAGTAGGA 58.512 45.833 0.00 0.00 0.00 2.94
339 351 5.280830 GGAGGGAGTATTAGAGAGGAGTAGG 60.281 52.000 0.00 0.00 0.00 3.18
340 352 5.570034 CGGAGGGAGTATTAGAGAGGAGTAG 60.570 52.000 0.00 0.00 0.00 2.57
341 353 4.286549 CGGAGGGAGTATTAGAGAGGAGTA 59.713 50.000 0.00 0.00 0.00 2.59
342 354 3.073356 CGGAGGGAGTATTAGAGAGGAGT 59.927 52.174 0.00 0.00 0.00 3.85
343 355 3.073356 ACGGAGGGAGTATTAGAGAGGAG 59.927 52.174 0.00 0.00 0.00 3.69
344 356 3.054576 ACGGAGGGAGTATTAGAGAGGA 58.945 50.000 0.00 0.00 0.00 3.71
345 357 3.512219 ACGGAGGGAGTATTAGAGAGG 57.488 52.381 0.00 0.00 0.00 3.69
346 358 5.134661 AGAAACGGAGGGAGTATTAGAGAG 58.865 45.833 0.00 0.00 0.00 3.20
347 359 5.126699 AGAAACGGAGGGAGTATTAGAGA 57.873 43.478 0.00 0.00 0.00 3.10
348 360 6.956202 TTAGAAACGGAGGGAGTATTAGAG 57.044 41.667 0.00 0.00 0.00 2.43
349 361 7.909485 ATTTAGAAACGGAGGGAGTATTAGA 57.091 36.000 0.00 0.00 0.00 2.10
352 364 9.338622 CAAATATTTAGAAACGGAGGGAGTATT 57.661 33.333 0.00 0.00 0.00 1.89
353 365 8.491958 ACAAATATTTAGAAACGGAGGGAGTAT 58.508 33.333 0.00 0.00 0.00 2.12
354 366 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
355 367 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
356 368 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
357 369 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
358 370 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
382 394 9.554395 TGTGATAGTCTGTTTGAAATGTCTAAA 57.446 29.630 0.00 0.00 0.00 1.85
383 395 9.725019 ATGTGATAGTCTGTTTGAAATGTCTAA 57.275 29.630 0.00 0.00 0.00 2.10
385 397 9.155975 GTATGTGATAGTCTGTTTGAAATGTCT 57.844 33.333 0.00 0.00 0.00 3.41
386 398 8.110612 CGTATGTGATAGTCTGTTTGAAATGTC 58.889 37.037 0.00 0.00 0.00 3.06
387 399 7.064609 CCGTATGTGATAGTCTGTTTGAAATGT 59.935 37.037 0.00 0.00 0.00 2.71
388 400 7.277760 TCCGTATGTGATAGTCTGTTTGAAATG 59.722 37.037 0.00 0.00 0.00 2.32
389 401 7.327975 TCCGTATGTGATAGTCTGTTTGAAAT 58.672 34.615 0.00 0.00 0.00 2.17
390 402 6.693466 TCCGTATGTGATAGTCTGTTTGAAA 58.307 36.000 0.00 0.00 0.00 2.69
391 403 6.275494 TCCGTATGTGATAGTCTGTTTGAA 57.725 37.500 0.00 0.00 0.00 2.69
392 404 5.907866 TCCGTATGTGATAGTCTGTTTGA 57.092 39.130 0.00 0.00 0.00 2.69
393 405 6.042777 ACATCCGTATGTGATAGTCTGTTTG 58.957 40.000 0.00 0.00 44.79 2.93
394 406 6.222038 ACATCCGTATGTGATAGTCTGTTT 57.778 37.500 0.00 0.00 44.79 2.83
395 407 5.854010 ACATCCGTATGTGATAGTCTGTT 57.146 39.130 0.00 0.00 44.79 3.16
396 408 6.914259 CATACATCCGTATGTGATAGTCTGT 58.086 40.000 3.56 0.00 46.70 3.41
411 423 9.077674 GCTCTAAAATATGTCTACATACATCCG 57.922 37.037 4.98 0.00 41.15 4.18
412 424 9.077674 CGCTCTAAAATATGTCTACATACATCC 57.922 37.037 4.98 0.00 41.15 3.51
413 425 9.627395 ACGCTCTAAAATATGTCTACATACATC 57.373 33.333 4.98 0.00 41.15 3.06
419 431 9.894783 GAATCTACGCTCTAAAATATGTCTACA 57.105 33.333 0.00 0.00 0.00 2.74
420 432 9.894783 TGAATCTACGCTCTAAAATATGTCTAC 57.105 33.333 0.00 0.00 0.00 2.59
421 433 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
422 434 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
423 435 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
432 444 9.947669 GAGTAAAATAAGTGAATCTACGCTCTA 57.052 33.333 0.00 0.00 0.00 2.43
433 445 7.921745 GGAGTAAAATAAGTGAATCTACGCTCT 59.078 37.037 0.00 0.00 0.00 4.09
434 446 7.096558 CGGAGTAAAATAAGTGAATCTACGCTC 60.097 40.741 0.00 0.00 0.00 5.03
435 447 6.696148 CGGAGTAAAATAAGTGAATCTACGCT 59.304 38.462 0.00 0.00 0.00 5.07
436 448 6.474751 ACGGAGTAAAATAAGTGAATCTACGC 59.525 38.462 0.00 0.00 41.94 4.42
437 449 7.982371 ACGGAGTAAAATAAGTGAATCTACG 57.018 36.000 0.00 0.00 41.94 3.51
452 464 8.089597 TCAACAAATGACTACATACGGAGTAAA 58.910 33.333 0.00 0.00 39.00 2.01
453 465 7.604549 TCAACAAATGACTACATACGGAGTAA 58.395 34.615 0.00 0.00 39.00 2.24
454 466 7.160547 TCAACAAATGACTACATACGGAGTA 57.839 36.000 0.00 0.00 39.62 2.59
455 467 6.032956 TCAACAAATGACTACATACGGAGT 57.967 37.500 0.00 0.00 37.64 3.85
456 468 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
457 469 7.915293 ATTTCAACAAATGACTACATACGGA 57.085 32.000 0.00 0.00 37.92 4.69
458 470 9.650371 CATATTTCAACAAATGACTACATACGG 57.350 33.333 0.00 0.00 37.92 4.02
486 498 9.908152 CCTCCGTTTTTAAATATTTGTCTTTCT 57.092 29.630 11.05 0.00 0.00 2.52
487 499 9.135843 CCCTCCGTTTTTAAATATTTGTCTTTC 57.864 33.333 11.05 0.00 0.00 2.62
488 500 8.862085 TCCCTCCGTTTTTAAATATTTGTCTTT 58.138 29.630 11.05 0.00 0.00 2.52
489 501 8.411991 TCCCTCCGTTTTTAAATATTTGTCTT 57.588 30.769 11.05 0.00 0.00 3.01
490 502 7.668469 ACTCCCTCCGTTTTTAAATATTTGTCT 59.332 33.333 11.05 0.00 0.00 3.41
491 503 7.823665 ACTCCCTCCGTTTTTAAATATTTGTC 58.176 34.615 11.05 0.00 0.00 3.18
492 504 7.770366 ACTCCCTCCGTTTTTAAATATTTGT 57.230 32.000 11.05 0.00 0.00 2.83
493 505 8.953313 AGTACTCCCTCCGTTTTTAAATATTTG 58.047 33.333 11.05 0.00 0.00 2.32
496 508 9.993454 GATAGTACTCCCTCCGTTTTTAAATAT 57.007 33.333 0.00 0.00 0.00 1.28
497 509 8.424133 GGATAGTACTCCCTCCGTTTTTAAATA 58.576 37.037 0.00 0.00 0.00 1.40
498 510 7.126879 AGGATAGTACTCCCTCCGTTTTTAAAT 59.873 37.037 0.00 0.00 35.79 1.40
499 511 6.441604 AGGATAGTACTCCCTCCGTTTTTAAA 59.558 38.462 0.00 0.00 35.79 1.52
500 512 5.960202 AGGATAGTACTCCCTCCGTTTTTAA 59.040 40.000 0.00 0.00 35.79 1.52
501 513 5.522641 AGGATAGTACTCCCTCCGTTTTTA 58.477 41.667 0.00 0.00 35.79 1.52
502 514 4.359996 AGGATAGTACTCCCTCCGTTTTT 58.640 43.478 0.00 0.00 35.79 1.94
503 515 3.991683 AGGATAGTACTCCCTCCGTTTT 58.008 45.455 0.00 0.00 35.79 2.43
504 516 3.684408 AGGATAGTACTCCCTCCGTTT 57.316 47.619 0.00 0.00 35.79 3.60
505 517 3.564264 GAAGGATAGTACTCCCTCCGTT 58.436 50.000 14.89 9.12 35.79 4.44
506 518 2.158490 GGAAGGATAGTACTCCCTCCGT 60.158 54.545 14.89 10.89 36.43 4.69
507 519 2.108601 AGGAAGGATAGTACTCCCTCCG 59.891 54.545 14.89 0.00 46.60 4.63
508 520 3.907459 AGGAAGGATAGTACTCCCTCC 57.093 52.381 14.89 12.33 43.67 4.30
509 521 5.425862 ACAAAAGGAAGGATAGTACTCCCTC 59.574 44.000 14.89 4.61 35.79 4.30
510 522 5.351405 ACAAAAGGAAGGATAGTACTCCCT 58.649 41.667 0.00 4.65 35.79 4.20
511 523 5.695424 ACAAAAGGAAGGATAGTACTCCC 57.305 43.478 0.00 1.96 35.79 4.30
527 539 3.980775 CGGTTGCACAATTCCTACAAAAG 59.019 43.478 0.00 0.00 0.00 2.27
528 540 3.243569 CCGGTTGCACAATTCCTACAAAA 60.244 43.478 0.00 0.00 0.00 2.44
529 541 2.294791 CCGGTTGCACAATTCCTACAAA 59.705 45.455 0.00 0.00 0.00 2.83
530 542 1.883275 CCGGTTGCACAATTCCTACAA 59.117 47.619 0.00 0.00 0.00 2.41
531 543 1.529226 CCGGTTGCACAATTCCTACA 58.471 50.000 0.00 0.00 0.00 2.74
532 544 0.808755 CCCGGTTGCACAATTCCTAC 59.191 55.000 0.00 0.00 0.00 3.18
533 545 0.322997 CCCCGGTTGCACAATTCCTA 60.323 55.000 0.00 0.00 0.00 2.94
534 546 1.606313 CCCCGGTTGCACAATTCCT 60.606 57.895 0.00 0.00 0.00 3.36
535 547 1.182385 TTCCCCGGTTGCACAATTCC 61.182 55.000 0.00 0.00 0.00 3.01
536 548 0.243636 CTTCCCCGGTTGCACAATTC 59.756 55.000 0.00 0.00 0.00 2.17
537 549 0.178975 TCTTCCCCGGTTGCACAATT 60.179 50.000 0.00 0.00 0.00 2.32
538 550 0.609131 CTCTTCCCCGGTTGCACAAT 60.609 55.000 0.00 0.00 0.00 2.71
539 551 1.228124 CTCTTCCCCGGTTGCACAA 60.228 57.895 0.00 0.00 0.00 3.33
540 552 2.111999 CTCTCTTCCCCGGTTGCACA 62.112 60.000 0.00 0.00 0.00 4.57
541 553 1.376037 CTCTCTTCCCCGGTTGCAC 60.376 63.158 0.00 0.00 0.00 4.57
542 554 2.592993 CCTCTCTTCCCCGGTTGCA 61.593 63.158 0.00 0.00 0.00 4.08
543 555 2.245438 CTCCTCTCTTCCCCGGTTGC 62.245 65.000 0.00 0.00 0.00 4.17
544 556 0.614979 TCTCCTCTCTTCCCCGGTTG 60.615 60.000 0.00 0.00 0.00 3.77
545 557 0.340208 ATCTCCTCTCTTCCCCGGTT 59.660 55.000 0.00 0.00 0.00 4.44
546 558 1.232909 TATCTCCTCTCTTCCCCGGT 58.767 55.000 0.00 0.00 0.00 5.28
547 559 2.383442 TTATCTCCTCTCTTCCCCGG 57.617 55.000 0.00 0.00 0.00 5.73
548 560 4.965200 AATTTATCTCCTCTCTTCCCCG 57.035 45.455 0.00 0.00 0.00 5.73
549 561 7.750655 ACATAAATTTATCTCCTCTCTTCCCC 58.249 38.462 7.76 0.00 0.00 4.81
550 562 9.634021 AAACATAAATTTATCTCCTCTCTTCCC 57.366 33.333 7.76 0.00 0.00 3.97
554 566 8.897752 GCACAAACATAAATTTATCTCCTCTCT 58.102 33.333 7.76 0.00 0.00 3.10
555 567 7.852945 CGCACAAACATAAATTTATCTCCTCTC 59.147 37.037 7.76 0.00 0.00 3.20
556 568 7.201732 CCGCACAAACATAAATTTATCTCCTCT 60.202 37.037 7.76 0.00 0.00 3.69
557 569 6.912591 CCGCACAAACATAAATTTATCTCCTC 59.087 38.462 7.76 0.00 0.00 3.71
558 570 6.680378 GCCGCACAAACATAAATTTATCTCCT 60.680 38.462 7.76 0.00 0.00 3.69
559 571 5.458779 GCCGCACAAACATAAATTTATCTCC 59.541 40.000 7.76 0.00 0.00 3.71
560 572 6.033341 TGCCGCACAAACATAAATTTATCTC 58.967 36.000 7.76 0.00 0.00 2.75
561 573 5.960113 TGCCGCACAAACATAAATTTATCT 58.040 33.333 7.76 0.00 0.00 1.98
562 574 6.639671 TTGCCGCACAAACATAAATTTATC 57.360 33.333 7.76 0.00 34.56 1.75
563 575 5.063312 GCTTGCCGCACAAACATAAATTTAT 59.937 36.000 4.81 4.81 37.96 1.40
564 576 4.387256 GCTTGCCGCACAAACATAAATTTA 59.613 37.500 0.00 0.00 37.96 1.40
565 577 3.186205 GCTTGCCGCACAAACATAAATTT 59.814 39.130 0.00 0.00 37.96 1.82
566 578 2.736192 GCTTGCCGCACAAACATAAATT 59.264 40.909 0.00 0.00 37.96 1.82
567 579 2.336667 GCTTGCCGCACAAACATAAAT 58.663 42.857 0.00 0.00 37.96 1.40
568 580 1.777101 GCTTGCCGCACAAACATAAA 58.223 45.000 0.00 0.00 37.96 1.40
569 581 0.386605 CGCTTGCCGCACAAACATAA 60.387 50.000 0.00 0.00 37.96 1.90
570 582 1.208870 CGCTTGCCGCACAAACATA 59.791 52.632 0.00 0.00 37.96 2.29
571 583 1.511318 TACGCTTGCCGCACAAACAT 61.511 50.000 0.00 0.00 41.76 2.71
572 584 1.715862 TTACGCTTGCCGCACAAACA 61.716 50.000 0.00 0.00 41.76 2.83
581 593 2.352960 CTCCTTTCAGATTACGCTTGCC 59.647 50.000 0.00 0.00 0.00 4.52
618 630 3.821421 ACTTCTCAACGGACAAACTCT 57.179 42.857 0.00 0.00 0.00 3.24
623 635 4.753107 GGATTACAACTTCTCAACGGACAA 59.247 41.667 0.00 0.00 0.00 3.18
628 640 3.581755 TCCGGATTACAACTTCTCAACG 58.418 45.455 0.00 0.00 0.00 4.10
681 716 2.440599 GCAGGCCCTCCTCCAAAA 59.559 61.111 0.00 0.00 41.93 2.44
701 4612 3.908081 GGCCGGCGGACTAATCGA 61.908 66.667 33.44 0.00 0.00 3.59
747 4979 1.225704 GATCAACCAGAGCCCCCTG 59.774 63.158 0.00 0.00 0.00 4.45
755 4987 3.938963 GCCAACTTATTCGATCAACCAGA 59.061 43.478 0.00 0.00 0.00 3.86
795 5027 2.925162 AAGCAGACTAATCGCCGGCC 62.925 60.000 23.46 4.36 0.00 6.13
823 5055 9.052365 CCTCCTCCTCTATTTATTTATAGGCTT 57.948 37.037 0.00 0.00 0.00 4.35
824 5056 7.625682 CCCTCCTCCTCTATTTATTTATAGGCT 59.374 40.741 0.00 0.00 0.00 4.58
957 5241 4.944317 TGGTCTTGTTGAACACACAATGTA 59.056 37.500 0.00 0.00 42.31 2.29
1309 7463 6.183361 TGACCTGGAATGGAACTACAACTTAA 60.183 38.462 0.00 0.00 0.00 1.85
1677 8019 1.735926 TGGGTATGTCCAGTTCACCA 58.264 50.000 0.00 0.00 38.11 4.17
1678 8020 2.224670 TGTTGGGTATGTCCAGTTCACC 60.225 50.000 0.00 0.00 38.17 4.02
1679 8021 3.134574 TGTTGGGTATGTCCAGTTCAC 57.865 47.619 0.00 0.00 38.17 3.18
1752 8097 1.272037 TGCAGCACAGAATTCATCCCA 60.272 47.619 8.44 0.00 0.00 4.37
2135 10399 6.757947 GCAGGTTGCATATAAATCACATTGTT 59.242 34.615 0.00 0.00 44.26 2.83
2225 10496 0.606401 GTTTGCTGAGCACAGGCCTA 60.606 55.000 6.64 0.00 43.62 3.93
2278 10549 6.594788 ACATTGTCCAAGCTAAATCACATT 57.405 33.333 0.00 0.00 0.00 2.71
2342 10613 3.181445 GGCACCAATGATCCCATACTGTA 60.181 47.826 0.00 0.00 31.59 2.74
2449 10722 4.843220 ACCAGATTCTTGTGCTTGAAAG 57.157 40.909 0.00 0.00 0.00 2.62
2489 10762 5.009911 CACAAAGATGTCATCAGGTTGGAAA 59.990 40.000 15.20 0.00 37.82 3.13
2547 10820 3.193263 GCAGACATATCTCCGCCATATG 58.807 50.000 0.00 0.00 39.31 1.78
2673 10952 0.682209 CCAGGCAAAGACATCCCCAG 60.682 60.000 0.00 0.00 0.00 4.45
2778 11061 2.712969 GAGTACAAGCGCGATAACTACG 59.287 50.000 12.10 0.00 0.00 3.51
2966 11262 5.426504 CATAAAGATGAAGTGAGCAGGTCT 58.573 41.667 0.38 0.00 34.73 3.85
2980 11276 5.065731 GTCCAGAGCAAGAACCATAAAGATG 59.934 44.000 0.00 0.00 0.00 2.90
2997 11293 5.128205 TGGATTGCAAGAATATGTCCAGAG 58.872 41.667 10.85 0.00 31.21 3.35
3064 11700 7.014230 TGAGCAGTCAACATGTATGCTAGTATA 59.986 37.037 20.92 0.00 46.67 1.47
3065 11701 6.166984 AGCAGTCAACATGTATGCTAGTAT 57.833 37.500 20.02 0.00 44.97 2.12
3066 11702 5.127031 TGAGCAGTCAACATGTATGCTAGTA 59.873 40.000 20.92 11.91 46.67 1.82
3067 11703 4.081476 TGAGCAGTCAACATGTATGCTAGT 60.081 41.667 20.92 6.52 46.67 2.57
3068 11704 4.269603 GTGAGCAGTCAACATGTATGCTAG 59.730 45.833 20.92 4.37 46.67 3.42
3166 11803 7.557358 TCCCTTACGATCAGTGTAACATTACTA 59.443 37.037 3.58 0.00 41.43 1.82
3168 11805 6.567050 TCCCTTACGATCAGTGTAACATTAC 58.433 40.000 0.00 0.00 41.43 1.89
3169 11806 6.778834 TCCCTTACGATCAGTGTAACATTA 57.221 37.500 0.00 0.00 41.43 1.90
3173 11810 5.347907 CACTTTCCCTTACGATCAGTGTAAC 59.652 44.000 0.00 0.00 0.00 2.50
3236 11879 3.506067 AGGCTCCTTAATTCCAAAACACG 59.494 43.478 0.00 0.00 0.00 4.49
3268 11911 2.149578 CTGGACCTGAGCTTTCTGTTG 58.850 52.381 0.00 0.00 0.00 3.33
3271 11914 0.035881 TGCTGGACCTGAGCTTTCTG 59.964 55.000 1.91 0.00 37.35 3.02
3319 11962 7.054751 GGCAGTCCTACTAATTAACTTTGGAT 58.945 38.462 0.00 0.00 0.00 3.41
3320 11963 6.214819 AGGCAGTCCTACTAATTAACTTTGGA 59.785 38.462 0.00 0.00 42.06 3.53
3321 11964 6.415573 AGGCAGTCCTACTAATTAACTTTGG 58.584 40.000 0.00 0.00 42.06 3.28
3347 11990 4.460382 GGAGATTTCTTGCTGATGGTTCAA 59.540 41.667 0.00 0.00 0.00 2.69
3373 12016 4.178540 AGTAATGTCATGCAATTTGCTGC 58.821 39.130 21.19 12.77 45.31 5.25
3501 12144 1.795872 TCAAAGCATTACACGTCCACG 59.204 47.619 0.00 0.00 46.33 4.94
3546 12189 9.699703 GGGCTTGTTTGTTTTTCATTTATACTA 57.300 29.630 0.00 0.00 0.00 1.82
3577 12327 2.995258 CCTTCATTTGGCATTTTCGGTG 59.005 45.455 0.00 0.00 0.00 4.94
3632 12382 7.756558 TGGTTGGCTGAAAAGTTTAAATTTTG 58.243 30.769 7.85 0.00 30.22 2.44
3639 12389 5.669164 AGTTTGGTTGGCTGAAAAGTTTA 57.331 34.783 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.