Multiple sequence alignment - TraesCS6D01G390800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G390800 chr6D 100.000 4298 0 0 1 4298 465968109 465963812 0.000000e+00 7938.0
1 TraesCS6D01G390800 chr6D 87.900 2471 194 44 726 3121 465745369 465742929 0.000000e+00 2809.0
2 TraesCS6D01G390800 chr6D 84.649 1355 162 27 1789 3115 466329631 466330967 0.000000e+00 1308.0
3 TraesCS6D01G390800 chr6D 91.636 550 20 16 174 720 465745970 465745444 0.000000e+00 737.0
4 TraesCS6D01G390800 chr6D 78.897 1052 194 16 1658 2699 466818954 466817921 0.000000e+00 688.0
5 TraesCS6D01G390800 chr6D 87.923 207 21 4 726 930 466621621 466621825 1.540000e-59 241.0
6 TraesCS6D01G390800 chr6D 81.271 299 38 10 371 660 466131555 466131266 4.320000e-55 226.0
7 TraesCS6D01G390800 chr6D 84.286 210 21 6 566 769 465348596 465348393 1.220000e-45 195.0
8 TraesCS6D01G390800 chr6D 96.581 117 2 2 1 116 465746085 465745970 4.390000e-45 193.0
9 TraesCS6D01G390800 chr6D 90.476 147 8 2 164 308 466131683 466131541 5.670000e-44 189.0
10 TraesCS6D01G390800 chr6D 86.301 146 13 4 22 161 466131863 466131719 7.440000e-33 152.0
11 TraesCS6D01G390800 chr6D 96.296 54 1 1 447 500 466131546 466131494 2.130000e-13 87.9
12 TraesCS6D01G390800 chr6B 87.055 2472 193 53 726 3121 710643203 710640783 0.000000e+00 2675.0
13 TraesCS6D01G390800 chr6B 84.437 1722 176 47 1441 3115 711359848 711361524 0.000000e+00 1611.0
14 TraesCS6D01G390800 chr6B 80.701 2026 329 44 1537 3526 711756200 711758199 0.000000e+00 1519.0
15 TraesCS6D01G390800 chr6B 83.903 994 142 16 1789 2768 711333452 711332463 0.000000e+00 933.0
16 TraesCS6D01G390800 chr6B 82.341 991 146 22 1797 2768 710683591 710682611 0.000000e+00 833.0
17 TraesCS6D01G390800 chr6B 93.931 379 11 7 1 373 711238514 711238142 2.900000e-156 562.0
18 TraesCS6D01G390800 chr6B 91.057 369 11 8 371 720 711238188 711237823 3.010000e-131 479.0
19 TraesCS6D01G390800 chr6B 88.150 346 12 14 453 769 710643547 710643202 6.740000e-103 385.0
20 TraesCS6D01G390800 chr6B 81.510 384 43 18 1285 1642 711362679 711362298 1.510000e-74 291.0
21 TraesCS6D01G390800 chr6B 81.795 390 30 21 545 899 711869581 711869964 5.440000e-74 289.0
22 TraesCS6D01G390800 chr6B 88.889 207 20 3 726 930 711876974 711877179 7.130000e-63 252.0
23 TraesCS6D01G390800 chr6B 82.239 259 32 11 928 1184 711362928 711362682 1.210000e-50 211.0
24 TraesCS6D01G390800 chr6B 91.096 146 7 3 22 161 710643894 710643749 4.390000e-45 193.0
25 TraesCS6D01G390800 chr6B 80.861 209 22 14 574 769 711740276 711740073 9.630000e-32 148.0
26 TraesCS6D01G390800 chr6B 83.333 96 10 4 674 769 710319567 710319478 2.750000e-12 84.2
27 TraesCS6D01G390800 chr6B 92.453 53 2 2 539 590 710325701 710325650 1.660000e-09 75.0
28 TraesCS6D01G390800 chr6A 88.701 2133 155 36 1445 3509 612300128 612302242 0.000000e+00 2525.0
29 TraesCS6D01G390800 chr6A 82.506 1652 244 30 1789 3428 611902361 611903979 0.000000e+00 1408.0
30 TraesCS6D01G390800 chr6A 83.959 1359 174 31 1789 3115 612291770 612293116 0.000000e+00 1262.0
31 TraesCS6D01G390800 chr6A 84.303 739 106 10 1789 2521 125260593 125261327 0.000000e+00 713.0
32 TraesCS6D01G390800 chr6A 80.059 1018 156 32 2555 3543 125261328 125262327 0.000000e+00 712.0
33 TraesCS6D01G390800 chr6A 94.524 420 19 3 1 417 612110791 612110373 0.000000e+00 645.0
34 TraesCS6D01G390800 chr6A 87.470 423 39 8 877 1291 612299642 612300058 3.890000e-130 475.0
35 TraesCS6D01G390800 chr6A 77.328 741 142 16 1503 2232 612660221 612660946 8.600000e-112 414.0
36 TraesCS6D01G390800 chr6A 95.652 230 6 3 327 552 612110329 612110100 2.440000e-97 366.0
37 TraesCS6D01G390800 chr6A 89.868 227 18 4 726 948 612109808 612109583 1.960000e-73 287.0
38 TraesCS6D01G390800 chr6A 82.635 334 35 12 726 1055 611901398 611901712 1.520000e-69 274.0
39 TraesCS6D01G390800 chr6A 92.973 185 12 1 726 909 613079021 613079205 7.080000e-68 268.0
40 TraesCS6D01G390800 chr6A 85.985 264 15 5 371 628 612126118 612125871 3.300000e-66 263.0
41 TraesCS6D01G390800 chr6A 85.878 262 11 5 534 769 613078761 613079022 5.520000e-64 255.0
42 TraesCS6D01G390800 chr6A 81.194 335 27 15 1 308 612126429 612126104 2.000000e-58 237.0
43 TraesCS6D01G390800 chr6A 92.453 159 8 3 470 625 611888062 611888219 1.560000e-54 224.0
44 TraesCS6D01G390800 chr6A 86.911 191 16 7 539 720 612110073 612109883 5.630000e-49 206.0
45 TraesCS6D01G390800 chr6A 94.898 98 5 0 622 719 125259281 125259378 2.070000e-33 154.0
46 TraesCS6D01G390800 chr6A 91.579 95 4 3 327 417 612110375 612110281 1.250000e-25 128.0
47 TraesCS6D01G390800 chr6A 91.579 95 4 3 327 417 612110421 612110327 1.250000e-25 128.0
48 TraesCS6D01G390800 chr6A 94.444 54 2 1 447 500 612126109 612126057 9.910000e-12 82.4
49 TraesCS6D01G390800 chr7B 82.000 700 101 15 3617 4298 59314617 59315309 4.820000e-159 571.0
50 TraesCS6D01G390800 chr7A 81.662 698 108 14 3614 4296 127265777 127266469 2.900000e-156 562.0
51 TraesCS6D01G390800 chr2D 81.609 696 110 14 3618 4298 619422151 619421459 1.040000e-155 560.0
52 TraesCS6D01G390800 chr5A 81.609 696 106 13 3619 4298 610234753 610235442 1.350000e-154 556.0
53 TraesCS6D01G390800 chr3D 81.724 673 108 7 3638 4297 321947413 321948083 8.130000e-152 547.0
54 TraesCS6D01G390800 chr3D 81.057 681 115 12 3617 4289 537682489 537681815 8.180000e-147 531.0
55 TraesCS6D01G390800 chr3D 82.394 568 96 4 3734 4298 466733254 466732688 3.860000e-135 492.0
56 TraesCS6D01G390800 chr4D 80.631 697 116 11 3617 4298 37839271 37838579 4.930000e-144 521.0
57 TraesCS6D01G390800 chr7D 80.000 705 115 16 3611 4297 629439103 629439799 8.300000e-137 497.0
58 TraesCS6D01G390800 chr5B 77.843 677 102 26 3626 4285 466368384 466369029 4.060000e-100 375.0
59 TraesCS6D01G390800 chr1B 80.769 390 39 25 545 909 92327430 92327052 5.480000e-69 272.0
60 TraesCS6D01G390800 chr4A 92.697 178 8 2 726 899 594050100 594049924 7.130000e-63 252.0
61 TraesCS6D01G390800 chr1D 81.061 264 35 9 923 1181 447556960 447557213 3.390000e-46 196.0
62 TraesCS6D01G390800 chr3B 82.258 248 23 13 530 769 197794868 197794634 1.220000e-45 195.0
63 TraesCS6D01G390800 chr1A 80.269 223 29 10 961 1181 543641481 543641690 2.070000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G390800 chr6D 465963812 465968109 4297 True 7938.000000 7938 100.0000 1 4298 1 chr6D.!!$R2 4297
1 TraesCS6D01G390800 chr6D 466329631 466330967 1336 False 1308.000000 1308 84.6490 1789 3115 1 chr6D.!!$F1 1326
2 TraesCS6D01G390800 chr6D 465742929 465746085 3156 True 1246.333333 2809 92.0390 1 3121 3 chr6D.!!$R4 3120
3 TraesCS6D01G390800 chr6D 466817921 466818954 1033 True 688.000000 688 78.8970 1658 2699 1 chr6D.!!$R3 1041
4 TraesCS6D01G390800 chr6B 711359848 711361524 1676 False 1611.000000 1611 84.4370 1441 3115 1 chr6B.!!$F1 1674
5 TraesCS6D01G390800 chr6B 711756200 711758199 1999 False 1519.000000 1519 80.7010 1537 3526 1 chr6B.!!$F2 1989
6 TraesCS6D01G390800 chr6B 710640783 710643894 3111 True 1084.333333 2675 88.7670 22 3121 3 chr6B.!!$R6 3099
7 TraesCS6D01G390800 chr6B 711332463 711333452 989 True 933.000000 933 83.9030 1789 2768 1 chr6B.!!$R4 979
8 TraesCS6D01G390800 chr6B 710682611 710683591 980 True 833.000000 833 82.3410 1797 2768 1 chr6B.!!$R3 971
9 TraesCS6D01G390800 chr6B 711237823 711238514 691 True 520.500000 562 92.4940 1 720 2 chr6B.!!$R7 719
10 TraesCS6D01G390800 chr6B 711362298 711362928 630 True 251.000000 291 81.8745 928 1642 2 chr6B.!!$R8 714
11 TraesCS6D01G390800 chr6A 612299642 612302242 2600 False 1500.000000 2525 88.0855 877 3509 2 chr6A.!!$F6 2632
12 TraesCS6D01G390800 chr6A 612291770 612293116 1346 False 1262.000000 1262 83.9590 1789 3115 1 chr6A.!!$F2 1326
13 TraesCS6D01G390800 chr6A 611901398 611903979 2581 False 841.000000 1408 82.5705 726 3428 2 chr6A.!!$F5 2702
14 TraesCS6D01G390800 chr6A 125259281 125262327 3046 False 526.333333 713 86.4200 622 3543 3 chr6A.!!$F4 2921
15 TraesCS6D01G390800 chr6A 612660221 612660946 725 False 414.000000 414 77.3280 1503 2232 1 chr6A.!!$F3 729
16 TraesCS6D01G390800 chr6A 612109583 612110791 1208 True 293.333333 645 91.6855 1 948 6 chr6A.!!$R1 947
17 TraesCS6D01G390800 chr7B 59314617 59315309 692 False 571.000000 571 82.0000 3617 4298 1 chr7B.!!$F1 681
18 TraesCS6D01G390800 chr7A 127265777 127266469 692 False 562.000000 562 81.6620 3614 4296 1 chr7A.!!$F1 682
19 TraesCS6D01G390800 chr2D 619421459 619422151 692 True 560.000000 560 81.6090 3618 4298 1 chr2D.!!$R1 680
20 TraesCS6D01G390800 chr5A 610234753 610235442 689 False 556.000000 556 81.6090 3619 4298 1 chr5A.!!$F1 679
21 TraesCS6D01G390800 chr3D 321947413 321948083 670 False 547.000000 547 81.7240 3638 4297 1 chr3D.!!$F1 659
22 TraesCS6D01G390800 chr3D 537681815 537682489 674 True 531.000000 531 81.0570 3617 4289 1 chr3D.!!$R2 672
23 TraesCS6D01G390800 chr3D 466732688 466733254 566 True 492.000000 492 82.3940 3734 4298 1 chr3D.!!$R1 564
24 TraesCS6D01G390800 chr4D 37838579 37839271 692 True 521.000000 521 80.6310 3617 4298 1 chr4D.!!$R1 681
25 TraesCS6D01G390800 chr7D 629439103 629439799 696 False 497.000000 497 80.0000 3611 4297 1 chr7D.!!$F1 686
26 TraesCS6D01G390800 chr5B 466368384 466369029 645 False 375.000000 375 77.8430 3626 4285 1 chr5B.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 891 1.490574 CTAGGGTTCCACCAGAGAGG 58.509 60.0 0.00 0.0 41.02 3.69 F
1043 1577 0.177141 CAGGCTGCCAAATTGATGGG 59.823 55.0 22.65 0.0 41.01 4.00 F
1329 1874 0.958091 CAGCAGATCTACGAGGGAGG 59.042 60.0 0.00 0.0 0.00 4.30 F
2977 3889 0.100682 CGTCGAGTGGGAATCATCGT 59.899 55.0 0.00 0.0 36.58 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2941 1.103803 TGCTGGAGACATAGTCCGAC 58.896 55.0 0.00 0.0 41.51 4.79 R
2944 3856 0.604073 TCGACGCCCTTGTTATCACA 59.396 50.0 0.00 0.0 0.00 3.58 R
3232 4147 0.033504 TCAGTCGCCAGGAAGTGAAC 59.966 55.0 0.00 0.0 0.00 3.18 R
4094 5044 0.509499 CGCTTCAAAGGTTTACGCGA 59.491 50.0 15.93 0.0 41.39 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
557 891 1.490574 CTAGGGTTCCACCAGAGAGG 58.509 60.000 0.00 0.00 41.02 3.69
720 1068 2.125147 TCCCCAATCGAAGCAGCG 60.125 61.111 0.00 0.00 0.00 5.18
1043 1577 0.177141 CAGGCTGCCAAATTGATGGG 59.823 55.000 22.65 0.00 41.01 4.00
1329 1874 0.958091 CAGCAGATCTACGAGGGAGG 59.042 60.000 0.00 0.00 0.00 4.30
1501 2188 7.094592 TGTGACAGTAGACAAAGAGACTATCAG 60.095 40.741 0.00 0.00 0.00 2.90
1576 2271 2.494471 TGCAGAAAGGCAATGAAGATGG 59.506 45.455 0.00 0.00 41.65 3.51
1989 2825 3.475566 TGACAGAGAAGGAACACAAGG 57.524 47.619 0.00 0.00 0.00 3.61
2078 2914 2.031163 GCTGGTCTCACACGCCTT 59.969 61.111 0.00 0.00 0.00 4.35
2113 2949 5.885230 TTGAGATTCGTTAAGTCGGACTA 57.115 39.130 11.71 0.00 0.00 2.59
2148 2984 3.983344 CCTTGTCACTTGCAAGCAATTAC 59.017 43.478 26.27 16.19 41.27 1.89
2291 3141 1.529010 CAAACTCACCTGGCTGGCA 60.529 57.895 10.71 3.18 40.22 4.92
2372 3222 2.548480 CGGGGTTCTGAGACTTTCAAAC 59.452 50.000 0.00 0.00 34.81 2.93
2373 3223 2.885266 GGGGTTCTGAGACTTTCAAACC 59.115 50.000 10.26 10.26 41.35 3.27
2521 3373 6.109359 GCACTTGTTCTGTACTCATCCTATT 58.891 40.000 0.00 0.00 0.00 1.73
2860 3765 5.469760 GCAAAATTAACCTGTTCCATTTGCT 59.530 36.000 20.32 1.84 0.00 3.91
2869 3774 2.361757 TGTTCCATTTGCTTGTGTCCTG 59.638 45.455 0.00 0.00 0.00 3.86
2924 3836 7.576403 TGTGAAATGATAATGGATGAGGAGAA 58.424 34.615 0.00 0.00 0.00 2.87
2932 3844 3.205519 TGGATGAGGAGAAAAGGAGGA 57.794 47.619 0.00 0.00 0.00 3.71
2936 3848 2.269940 TGAGGAGAAAAGGAGGAAGGG 58.730 52.381 0.00 0.00 0.00 3.95
2937 3849 0.995803 AGGAGAAAAGGAGGAAGGGC 59.004 55.000 0.00 0.00 0.00 5.19
2939 3851 2.197465 GGAGAAAAGGAGGAAGGGCTA 58.803 52.381 0.00 0.00 0.00 3.93
2944 3856 6.410970 GGAGAAAAGGAGGAAGGGCTATTATT 60.411 42.308 0.00 0.00 0.00 1.40
2974 3886 1.144057 GGCGTCGAGTGGGAATCAT 59.856 57.895 0.00 0.00 0.00 2.45
2976 3888 1.209275 GCGTCGAGTGGGAATCATCG 61.209 60.000 0.00 0.00 36.54 3.84
2977 3889 0.100682 CGTCGAGTGGGAATCATCGT 59.899 55.000 0.00 0.00 36.58 3.73
2997 3909 3.916172 CGTCATCAAATTTCAAGCACCAG 59.084 43.478 0.00 0.00 0.00 4.00
3037 3949 4.758674 CCATCTTCTGCTTTCAGTCTGAAA 59.241 41.667 23.38 23.38 43.37 2.69
3124 4036 6.959639 TGTATGATAGACTGACATGTAGCA 57.040 37.500 0.00 0.00 0.00 3.49
3134 4046 1.067669 GACATGTAGCAGATGCCGAGA 59.932 52.381 0.00 0.00 43.38 4.04
3153 4065 1.192146 ACGTGGAGCCTCTAAAGCCA 61.192 55.000 0.00 0.00 0.00 4.75
3209 4121 1.467920 GTGGAGAAGCAAATCAGGGG 58.532 55.000 0.00 0.00 0.00 4.79
3232 4147 2.224606 ACATTGAGTCACTTGCCACAG 58.775 47.619 0.00 0.00 0.00 3.66
3234 4149 2.418368 TTGAGTCACTTGCCACAGTT 57.582 45.000 0.00 0.00 0.00 3.16
3251 4166 0.033504 GTTCACTTCCTGGCGACTGA 59.966 55.000 0.00 0.00 0.00 3.41
3254 4169 0.036952 CACTTCCTGGCGACTGATGT 60.037 55.000 0.00 0.00 0.00 3.06
3264 4179 3.181469 TGGCGACTGATGTAATAAGGGAC 60.181 47.826 0.00 0.00 0.00 4.46
3268 4183 5.154932 CGACTGATGTAATAAGGGACGATC 58.845 45.833 0.00 0.00 0.00 3.69
3283 4198 3.743396 GGACGATCATCTTGCAAGGATAC 59.257 47.826 25.73 14.40 0.00 2.24
3286 4201 3.993081 CGATCATCTTGCAAGGATACCTC 59.007 47.826 25.73 13.68 30.89 3.85
3287 4202 3.459232 TCATCTTGCAAGGATACCTCG 57.541 47.619 25.73 6.35 30.89 4.63
3346 4269 0.889306 ACTGAGTACTCGGTTGGAGC 59.111 55.000 28.23 0.00 46.32 4.70
3353 4276 3.614399 CTCGGTTGGAGCAGAAAGT 57.386 52.632 0.00 0.00 35.63 2.66
3354 4277 1.433534 CTCGGTTGGAGCAGAAAGTC 58.566 55.000 0.00 0.00 35.63 3.01
3355 4278 0.756294 TCGGTTGGAGCAGAAAGTCA 59.244 50.000 0.00 0.00 0.00 3.41
3384 4311 4.933400 GTCTGCGTTTCCTTATTTGGTCTA 59.067 41.667 0.00 0.00 0.00 2.59
3394 4321 7.859325 TCCTTATTTGGTCTATTTGTGTAGC 57.141 36.000 0.00 0.00 0.00 3.58
3405 4332 1.167851 TTGTGTAGCTGCAATGCCTC 58.832 50.000 5.91 0.00 0.00 4.70
3416 4343 5.180117 AGCTGCAATGCCTCGTATAATTAAG 59.820 40.000 1.53 0.00 0.00 1.85
3419 4346 7.132694 TGCAATGCCTCGTATAATTAAGATG 57.867 36.000 1.53 0.00 0.00 2.90
3432 4359 9.937175 GTATAATTAAGATGAGTTGAAAGTGGC 57.063 33.333 0.00 0.00 0.00 5.01
3433 4360 6.899393 AATTAAGATGAGTTGAAAGTGGCA 57.101 33.333 0.00 0.00 0.00 4.92
3434 4361 5.689383 TTAAGATGAGTTGAAAGTGGCAC 57.311 39.130 10.29 10.29 0.00 5.01
3436 4363 3.825328 AGATGAGTTGAAAGTGGCACTT 58.175 40.909 26.54 26.54 40.80 3.16
3453 4384 5.536538 TGGCACTTGTATTGTTGGTGAATTA 59.463 36.000 0.00 0.00 0.00 1.40
3455 4386 7.096551 GGCACTTGTATTGTTGGTGAATTAAT 58.903 34.615 0.00 0.00 0.00 1.40
3456 4387 7.602265 GGCACTTGTATTGTTGGTGAATTAATT 59.398 33.333 0.00 0.00 0.00 1.40
3457 4388 8.987890 GCACTTGTATTGTTGGTGAATTAATTT 58.012 29.630 1.43 0.00 0.00 1.82
3507 4438 9.036980 AGACCTTAGTTTGTAGAGTCATATTGT 57.963 33.333 0.00 0.00 0.00 2.71
3520 4451 8.500753 AGAGTCATATTGTATCTACCGATCTC 57.499 38.462 0.00 0.00 0.00 2.75
3528 4459 7.526142 TTGTATCTACCGATCTCTAATTGCT 57.474 36.000 0.00 0.00 0.00 3.91
3554 4485 7.959689 ATGAGTGCATCAGTTGATACTATTC 57.040 36.000 0.00 0.00 42.53 1.75
3555 4486 7.117285 TGAGTGCATCAGTTGATACTATTCT 57.883 36.000 0.00 0.00 32.77 2.40
3556 4487 7.559486 TGAGTGCATCAGTTGATACTATTCTT 58.441 34.615 0.00 0.00 32.77 2.52
3557 4488 8.043113 TGAGTGCATCAGTTGATACTATTCTTT 58.957 33.333 0.00 0.00 32.77 2.52
3558 4489 8.206325 AGTGCATCAGTTGATACTATTCTTTG 57.794 34.615 0.00 0.00 32.63 2.77
3559 4490 7.281774 AGTGCATCAGTTGATACTATTCTTTGG 59.718 37.037 0.00 0.00 32.63 3.28
3560 4491 6.543465 TGCATCAGTTGATACTATTCTTTGGG 59.457 38.462 0.00 0.00 32.63 4.12
3561 4492 6.514048 GCATCAGTTGATACTATTCTTTGGGC 60.514 42.308 0.00 0.00 32.63 5.36
3562 4493 5.116180 TCAGTTGATACTATTCTTTGGGCG 58.884 41.667 0.00 0.00 31.96 6.13
3563 4494 5.105106 TCAGTTGATACTATTCTTTGGGCGA 60.105 40.000 0.00 0.00 31.96 5.54
3564 4495 5.584649 CAGTTGATACTATTCTTTGGGCGAA 59.415 40.000 0.00 0.00 31.96 4.70
3565 4496 6.260936 CAGTTGATACTATTCTTTGGGCGAAT 59.739 38.462 0.00 0.00 35.45 3.34
3566 4497 7.441157 CAGTTGATACTATTCTTTGGGCGAATA 59.559 37.037 0.00 0.00 33.47 1.75
3572 4503 6.969828 CTATTCTTTGGGCGAATAGTATCC 57.030 41.667 10.22 0.00 42.42 2.59
3573 4504 5.568620 ATTCTTTGGGCGAATAGTATCCT 57.431 39.130 0.00 0.00 29.78 3.24
3574 4505 5.367945 TTCTTTGGGCGAATAGTATCCTT 57.632 39.130 0.00 0.00 0.00 3.36
3575 4506 4.703897 TCTTTGGGCGAATAGTATCCTTG 58.296 43.478 0.00 0.00 0.00 3.61
3576 4507 4.407621 TCTTTGGGCGAATAGTATCCTTGA 59.592 41.667 0.00 0.00 0.00 3.02
3577 4508 4.336889 TTGGGCGAATAGTATCCTTGAG 57.663 45.455 0.00 0.00 0.00 3.02
3578 4509 2.632996 TGGGCGAATAGTATCCTTGAGG 59.367 50.000 0.00 0.00 0.00 3.86
3579 4510 2.028020 GGGCGAATAGTATCCTTGAGGG 60.028 54.545 0.00 0.00 35.41 4.30
3580 4511 2.028020 GGCGAATAGTATCCTTGAGGGG 60.028 54.545 0.00 0.00 35.41 4.79
3581 4512 2.897969 GCGAATAGTATCCTTGAGGGGA 59.102 50.000 0.00 0.00 39.95 4.81
3582 4513 3.323979 GCGAATAGTATCCTTGAGGGGAA 59.676 47.826 0.00 0.00 39.02 3.97
3583 4514 4.561734 GCGAATAGTATCCTTGAGGGGAAG 60.562 50.000 0.00 0.00 39.02 3.46
3584 4515 4.561734 CGAATAGTATCCTTGAGGGGAAGC 60.562 50.000 0.00 0.00 39.02 3.86
3585 4516 1.123928 AGTATCCTTGAGGGGAAGCG 58.876 55.000 0.00 0.00 39.02 4.68
3586 4517 0.831307 GTATCCTTGAGGGGAAGCGT 59.169 55.000 0.00 0.00 39.02 5.07
3587 4518 0.830648 TATCCTTGAGGGGAAGCGTG 59.169 55.000 0.00 0.00 39.02 5.34
3588 4519 1.201429 ATCCTTGAGGGGAAGCGTGT 61.201 55.000 0.00 0.00 39.02 4.49
3589 4520 1.073199 CCTTGAGGGGAAGCGTGTT 59.927 57.895 0.00 0.00 0.00 3.32
3590 4521 0.537371 CCTTGAGGGGAAGCGTGTTT 60.537 55.000 0.00 0.00 0.00 2.83
3591 4522 1.271163 CCTTGAGGGGAAGCGTGTTTA 60.271 52.381 0.00 0.00 0.00 2.01
3592 4523 2.618045 CCTTGAGGGGAAGCGTGTTTAT 60.618 50.000 0.00 0.00 0.00 1.40
3593 4524 2.107950 TGAGGGGAAGCGTGTTTATG 57.892 50.000 0.00 0.00 0.00 1.90
3594 4525 1.626321 TGAGGGGAAGCGTGTTTATGA 59.374 47.619 0.00 0.00 0.00 2.15
3595 4526 2.238646 TGAGGGGAAGCGTGTTTATGAT 59.761 45.455 0.00 0.00 0.00 2.45
3596 4527 2.872858 GAGGGGAAGCGTGTTTATGATC 59.127 50.000 0.00 0.00 0.00 2.92
3597 4528 2.238646 AGGGGAAGCGTGTTTATGATCA 59.761 45.455 0.00 0.00 0.00 2.92
3598 4529 2.614057 GGGGAAGCGTGTTTATGATCAG 59.386 50.000 0.09 0.00 0.00 2.90
3599 4530 2.614057 GGGAAGCGTGTTTATGATCAGG 59.386 50.000 0.09 0.00 0.00 3.86
3600 4531 3.531538 GGAAGCGTGTTTATGATCAGGA 58.468 45.455 0.09 0.00 0.00 3.86
3601 4532 4.130118 GGAAGCGTGTTTATGATCAGGAT 58.870 43.478 0.09 0.00 0.00 3.24
3602 4533 4.024556 GGAAGCGTGTTTATGATCAGGATG 60.025 45.833 0.09 0.00 37.54 3.51
3603 4534 4.142609 AGCGTGTTTATGATCAGGATGT 57.857 40.909 0.09 0.00 37.40 3.06
3604 4535 3.873361 AGCGTGTTTATGATCAGGATGTG 59.127 43.478 0.09 0.00 37.40 3.21
3605 4536 3.002656 GCGTGTTTATGATCAGGATGTGG 59.997 47.826 0.09 0.00 37.40 4.17
3606 4537 4.441792 CGTGTTTATGATCAGGATGTGGA 58.558 43.478 0.09 0.00 37.40 4.02
3607 4538 5.059161 CGTGTTTATGATCAGGATGTGGAT 58.941 41.667 0.09 0.00 37.40 3.41
3608 4539 5.528690 CGTGTTTATGATCAGGATGTGGATT 59.471 40.000 0.09 0.00 37.40 3.01
3609 4540 6.038603 CGTGTTTATGATCAGGATGTGGATTT 59.961 38.462 0.09 0.00 37.40 2.17
3612 4543 7.396907 TGTTTATGATCAGGATGTGGATTTGTT 59.603 33.333 0.09 0.00 37.40 2.83
3615 4546 5.188434 TGATCAGGATGTGGATTTGTTCTC 58.812 41.667 0.00 0.00 37.40 2.87
3657 4590 0.898320 CATCACCCTTGTCCTCGACT 59.102 55.000 0.00 0.00 33.15 4.18
3698 4631 2.031314 CACAACATCTCATAAGCTGCCG 59.969 50.000 0.00 0.00 0.00 5.69
3717 4650 3.614870 GCCGCAAAGTCTTTGATTTCCAT 60.615 43.478 26.14 0.00 43.26 3.41
3738 4681 0.630673 TTATTGCAGCTCCACCCCAT 59.369 50.000 0.00 0.00 0.00 4.00
3746 4689 3.078196 TCCACCCCATCGCGCTTA 61.078 61.111 5.56 0.00 0.00 3.09
3819 4763 3.341823 TGCAAAGTGGCATTGTTTGTTT 58.658 36.364 16.44 0.00 39.25 2.83
3832 4778 3.855668 TGTTTGTTTCCTTGGGGATCAT 58.144 40.909 0.00 0.00 41.87 2.45
3843 4789 5.857283 TCCTTGGGGATCATATATGGTCTTT 59.143 40.000 22.32 0.46 38.02 2.52
3846 4792 6.294361 TGGGGATCATATATGGTCTTTACG 57.706 41.667 22.32 0.00 38.02 3.18
3855 4801 1.735559 GGTCTTTACGAACGCCGCT 60.736 57.895 0.00 0.00 43.32 5.52
3862 4808 1.074319 TACGAACGCCGCTCATTGAC 61.074 55.000 0.00 0.00 43.32 3.18
3904 4850 4.261909 GGTAGTATCCCATGTTGTAGTCGG 60.262 50.000 0.00 0.00 0.00 4.79
3914 4860 2.056577 GTTGTAGTCGGAACCGTTGAG 58.943 52.381 12.93 0.00 40.74 3.02
3931 4879 1.278985 TGAGAGTGTAGTTGCATGGGG 59.721 52.381 0.00 0.00 0.00 4.96
3954 4902 5.616270 GGATTCCCCATTAGAAAGTCTCTC 58.384 45.833 0.00 0.00 33.30 3.20
3966 4914 2.223803 AGTCTCTCGAACATGGGAGT 57.776 50.000 0.00 0.00 0.00 3.85
3976 4924 0.687354 ACATGGGAGTTCGCTGAAGT 59.313 50.000 0.00 0.00 0.00 3.01
3986 4934 3.372206 AGTTCGCTGAAGTACATTGATGC 59.628 43.478 0.00 0.00 0.00 3.91
4003 4951 1.375523 GCCGTTGTGAGAACCCGAT 60.376 57.895 0.00 0.00 0.00 4.18
4007 4955 3.267483 CCGTTGTGAGAACCCGATATTT 58.733 45.455 0.00 0.00 0.00 1.40
4021 4969 5.652014 ACCCGATATTTCAAAGAAAGCATGA 59.348 36.000 0.00 0.00 0.00 3.07
4094 5044 2.334977 TGGTGTGACCTTGGTACATCT 58.665 47.619 0.00 0.00 39.58 2.90
4109 5060 3.034721 ACATCTCGCGTAAACCTTTGA 57.965 42.857 5.77 0.00 0.00 2.69
4127 5078 0.881118 GAAGCGGTTCTTCCATTGCA 59.119 50.000 19.71 0.00 44.22 4.08
4133 5084 1.994779 GGTTCTTCCATTGCAAATGCG 59.005 47.619 1.71 0.00 39.02 4.73
4170 5122 2.678336 CGAGCATACCTGAAAAACCTCC 59.322 50.000 0.00 0.00 0.00 4.30
4289 5242 2.744202 CACAGTGGTCTTTAGGCATGTC 59.256 50.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 331 2.267642 GCGTGTGCATCACCCCTA 59.732 61.111 11.99 0.00 43.51 3.53
249 353 0.749649 TGCAAGCAAAAACATCCCGT 59.250 45.000 0.00 0.00 0.00 5.28
250 354 1.526464 GTTGCAAGCAAAAACATCCCG 59.474 47.619 9.32 0.00 37.70 5.14
557 891 1.984288 CTGACCCCCGATCCCCTTTC 61.984 65.000 0.00 0.00 0.00 2.62
1043 1577 0.179174 CGCCTTAACCGATGGTTTGC 60.179 55.000 6.53 6.95 44.33 3.68
1153 1696 8.856153 TTATGGTTGCTACTTTTGACTATTCA 57.144 30.769 0.00 0.00 0.00 2.57
1161 1704 5.811399 TCCGATTATGGTTGCTACTTTTG 57.189 39.130 0.00 0.00 0.00 2.44
1329 1874 1.453928 GCTAAGGACACCCCCATGC 60.454 63.158 0.00 0.00 34.66 4.06
1501 2188 7.680982 TCACATTACAGACAAATACGCAATAC 58.319 34.615 0.00 0.00 0.00 1.89
1576 2271 1.340017 TGGGCAACTTGCTGATCCTAC 60.340 52.381 13.43 0.00 44.28 3.18
1934 2764 3.876914 CAGCTTTCTCAACCTTGTGTGTA 59.123 43.478 0.00 0.00 0.00 2.90
1989 2825 4.069300 TCAGAGCATCATCAGGAATGAC 57.931 45.455 0.00 0.00 47.00 3.06
2005 2841 1.237285 CCGTGCCCCAAAGTTCAGAG 61.237 60.000 0.00 0.00 0.00 3.35
2006 2842 1.228124 CCGTGCCCCAAAGTTCAGA 60.228 57.895 0.00 0.00 0.00 3.27
2078 2914 2.787473 ATCTCAAATTCGCCAGGTCA 57.213 45.000 0.00 0.00 0.00 4.02
2101 2937 3.380637 GCTGGAGACATAGTCCGACTTAA 59.619 47.826 6.31 0.00 41.51 1.85
2105 2941 1.103803 TGCTGGAGACATAGTCCGAC 58.896 55.000 0.00 0.00 41.51 4.79
2113 2949 1.911357 TGACAAGGATGCTGGAGACAT 59.089 47.619 0.00 0.00 41.51 3.06
2148 2984 8.372521 GTCGCAATTGTGAAAACCTAAATAATG 58.627 33.333 22.63 0.00 36.19 1.90
2291 3141 8.477256 TCTTGTGAAGATCTCCAAAACAAAAAT 58.523 29.630 0.00 0.00 31.20 1.82
2372 3222 2.293677 TGTGCATAGTACGAGCAAGG 57.706 50.000 10.68 0.00 40.35 3.61
2373 3223 4.661993 TTTTGTGCATAGTACGAGCAAG 57.338 40.909 10.68 0.00 40.35 4.01
2521 3373 4.852134 ATCTGCAACAATAAGCAACACA 57.148 36.364 0.00 0.00 40.73 3.72
2742 3633 6.959904 AGAACATACAGTCAGGTAGTAGAGA 58.040 40.000 0.00 0.00 0.00 3.10
2860 3765 2.005606 ATGCCACCCACAGGACACAA 62.006 55.000 0.00 0.00 36.73 3.33
2869 3774 2.687935 CAATTACCTACATGCCACCCAC 59.312 50.000 0.00 0.00 0.00 4.61
2924 3836 5.193728 TCACAATAATAGCCCTTCCTCCTTT 59.806 40.000 0.00 0.00 0.00 3.11
2932 3844 6.777580 CCCTTGTTATCACAATAATAGCCCTT 59.222 38.462 0.00 0.00 42.21 3.95
2936 3848 5.238650 ACGCCCTTGTTATCACAATAATAGC 59.761 40.000 0.00 0.00 42.21 2.97
2937 3849 6.346598 CGACGCCCTTGTTATCACAATAATAG 60.347 42.308 0.00 0.00 42.21 1.73
2939 3851 4.272504 CGACGCCCTTGTTATCACAATAAT 59.727 41.667 0.00 0.00 42.21 1.28
2944 3856 0.604073 TCGACGCCCTTGTTATCACA 59.396 50.000 0.00 0.00 0.00 3.58
2974 3886 3.567585 TGGTGCTTGAAATTTGATGACGA 59.432 39.130 0.00 0.00 0.00 4.20
2976 3888 3.676646 GCTGGTGCTTGAAATTTGATGAC 59.323 43.478 0.00 0.00 36.03 3.06
2977 3889 3.612241 CGCTGGTGCTTGAAATTTGATGA 60.612 43.478 0.00 0.00 36.97 2.92
2997 3909 2.029844 GGTGAGCTTGGTCAGACGC 61.030 63.158 2.53 0.00 0.00 5.19
3122 4034 2.887568 CCACGTCTCGGCATCTGC 60.888 66.667 0.00 0.00 41.14 4.26
3124 4036 3.069980 GCTCCACGTCTCGGCATCT 62.070 63.158 0.00 0.00 0.00 2.90
3134 4046 1.597461 GGCTTTAGAGGCTCCACGT 59.403 57.895 11.71 0.00 44.59 4.49
3209 4121 1.168714 GGCAAGTGACTCAATGTCCC 58.831 55.000 0.00 0.00 44.75 4.46
3212 4127 2.224606 CTGTGGCAAGTGACTCAATGT 58.775 47.619 0.00 0.00 0.00 2.71
3232 4147 0.033504 TCAGTCGCCAGGAAGTGAAC 59.966 55.000 0.00 0.00 0.00 3.18
3234 4149 0.247460 CATCAGTCGCCAGGAAGTGA 59.753 55.000 0.00 0.00 0.00 3.41
3251 4166 5.934625 GCAAGATGATCGTCCCTTATTACAT 59.065 40.000 11.42 0.00 0.00 2.29
3254 4169 5.545063 TGCAAGATGATCGTCCCTTATTA 57.455 39.130 11.42 0.00 0.00 0.98
3264 4179 3.993081 GAGGTATCCTTGCAAGATGATCG 59.007 47.826 28.05 9.83 31.76 3.69
3268 4183 3.388308 CTCGAGGTATCCTTGCAAGATG 58.612 50.000 28.05 12.10 35.08 2.90
3283 4198 1.543802 CTGCCTCTAATAGCCTCGAGG 59.456 57.143 27.83 27.83 44.58 4.63
3286 4201 3.126831 CAAACTGCCTCTAATAGCCTCG 58.873 50.000 0.00 0.00 0.00 4.63
3287 4202 4.143986 ACAAACTGCCTCTAATAGCCTC 57.856 45.455 0.00 0.00 0.00 4.70
3323 4240 1.616865 CCAACCGAGTACTCAGTCCAA 59.383 52.381 22.37 0.00 0.00 3.53
3345 4268 3.198863 CAGACTTGCATGACTTTCTGC 57.801 47.619 6.60 0.00 38.87 4.26
3384 4311 2.165030 GAGGCATTGCAGCTACACAAAT 59.835 45.455 11.39 0.00 34.17 2.32
3394 4321 6.785488 TCTTAATTATACGAGGCATTGCAG 57.215 37.500 11.39 3.82 0.00 4.41
3416 4343 3.316308 ACAAGTGCCACTTTCAACTCATC 59.684 43.478 7.51 0.00 36.03 2.92
3419 4346 5.215160 CAATACAAGTGCCACTTTCAACTC 58.785 41.667 7.51 0.00 36.03 3.01
3431 4358 8.532977 AATTAATTCACCAACAATACAAGTGC 57.467 30.769 0.00 0.00 0.00 4.40
3507 4438 7.611855 TCATCAGCAATTAGAGATCGGTAGATA 59.388 37.037 0.00 0.00 37.19 1.98
3511 4442 5.536538 ACTCATCAGCAATTAGAGATCGGTA 59.463 40.000 0.00 0.00 0.00 4.02
3513 4444 4.685165 CACTCATCAGCAATTAGAGATCGG 59.315 45.833 0.00 0.00 0.00 4.18
3514 4445 4.150274 GCACTCATCAGCAATTAGAGATCG 59.850 45.833 0.00 0.00 0.00 3.69
3543 4474 7.962964 CTATTCGCCCAAAGAATAGTATCAA 57.037 36.000 14.43 0.00 46.05 2.57
3567 4498 0.831307 ACGCTTCCCCTCAAGGATAC 59.169 55.000 0.00 0.00 38.24 2.24
3568 4499 0.830648 CACGCTTCCCCTCAAGGATA 59.169 55.000 0.00 0.00 38.24 2.59
3569 4500 1.201429 ACACGCTTCCCCTCAAGGAT 61.201 55.000 0.00 0.00 38.24 3.24
3570 4501 1.415672 AACACGCTTCCCCTCAAGGA 61.416 55.000 0.00 0.00 38.24 3.36
3571 4502 0.537371 AAACACGCTTCCCCTCAAGG 60.537 55.000 0.00 0.00 0.00 3.61
3572 4503 2.178912 TAAACACGCTTCCCCTCAAG 57.821 50.000 0.00 0.00 0.00 3.02
3573 4504 2.039216 TCATAAACACGCTTCCCCTCAA 59.961 45.455 0.00 0.00 0.00 3.02
3574 4505 1.626321 TCATAAACACGCTTCCCCTCA 59.374 47.619 0.00 0.00 0.00 3.86
3575 4506 2.396590 TCATAAACACGCTTCCCCTC 57.603 50.000 0.00 0.00 0.00 4.30
3576 4507 2.238646 TGATCATAAACACGCTTCCCCT 59.761 45.455 0.00 0.00 0.00 4.79
3577 4508 2.614057 CTGATCATAAACACGCTTCCCC 59.386 50.000 0.00 0.00 0.00 4.81
3578 4509 2.614057 CCTGATCATAAACACGCTTCCC 59.386 50.000 0.00 0.00 0.00 3.97
3579 4510 3.531538 TCCTGATCATAAACACGCTTCC 58.468 45.455 0.00 0.00 0.00 3.46
3580 4511 4.572389 ACATCCTGATCATAAACACGCTTC 59.428 41.667 0.00 0.00 0.00 3.86
3581 4512 4.333649 CACATCCTGATCATAAACACGCTT 59.666 41.667 0.00 0.00 0.00 4.68
3582 4513 3.873361 CACATCCTGATCATAAACACGCT 59.127 43.478 0.00 0.00 0.00 5.07
3583 4514 3.002656 CCACATCCTGATCATAAACACGC 59.997 47.826 0.00 0.00 0.00 5.34
3584 4515 4.441792 TCCACATCCTGATCATAAACACG 58.558 43.478 0.00 0.00 0.00 4.49
3585 4516 6.949352 AATCCACATCCTGATCATAAACAC 57.051 37.500 0.00 0.00 0.00 3.32
3586 4517 6.891361 ACAAATCCACATCCTGATCATAAACA 59.109 34.615 0.00 0.00 0.00 2.83
3587 4518 7.338800 ACAAATCCACATCCTGATCATAAAC 57.661 36.000 0.00 0.00 0.00 2.01
3588 4519 7.835682 AGAACAAATCCACATCCTGATCATAAA 59.164 33.333 0.00 0.00 0.00 1.40
3589 4520 7.348815 AGAACAAATCCACATCCTGATCATAA 58.651 34.615 0.00 0.00 0.00 1.90
3590 4521 6.903516 AGAACAAATCCACATCCTGATCATA 58.096 36.000 0.00 0.00 0.00 2.15
3591 4522 5.763355 AGAACAAATCCACATCCTGATCAT 58.237 37.500 0.00 0.00 0.00 2.45
3592 4523 5.183530 AGAACAAATCCACATCCTGATCA 57.816 39.130 0.00 0.00 0.00 2.92
3593 4524 4.578105 GGAGAACAAATCCACATCCTGATC 59.422 45.833 0.00 0.00 36.79 2.92
3594 4525 4.018141 TGGAGAACAAATCCACATCCTGAT 60.018 41.667 0.00 0.00 41.96 2.90
3595 4526 3.330405 TGGAGAACAAATCCACATCCTGA 59.670 43.478 0.00 0.00 41.96 3.86
3596 4527 3.689347 TGGAGAACAAATCCACATCCTG 58.311 45.455 0.00 0.00 41.96 3.86
3597 4528 4.387026 TTGGAGAACAAATCCACATCCT 57.613 40.909 0.00 0.00 46.46 3.24
3607 4538 5.669477 CAAACCCTGATTTTGGAGAACAAA 58.331 37.500 0.00 0.00 46.82 2.83
3608 4539 5.275067 CAAACCCTGATTTTGGAGAACAA 57.725 39.130 0.00 0.00 37.28 2.83
3609 4540 4.935352 CAAACCCTGATTTTGGAGAACA 57.065 40.909 0.00 0.00 31.44 3.18
3632 4565 1.633945 AGGACAAGGGTGATGGGTAAC 59.366 52.381 0.00 0.00 0.00 2.50
3690 4623 0.031178 CAAAGACTTTGCGGCAGCTT 59.969 50.000 14.73 3.41 45.42 3.74
3717 4650 1.849692 TGGGGTGGAGCTGCAATAATA 59.150 47.619 10.44 0.00 0.00 0.98
3741 4684 2.386249 GTATTCGGAGTGCTCTAAGCG 58.614 52.381 0.00 0.00 46.26 4.68
3746 4689 1.063567 AGAGGGTATTCGGAGTGCTCT 60.064 52.381 0.00 0.00 0.00 4.09
3795 4738 1.952193 AACAATGCCACTTTGCAACC 58.048 45.000 0.00 0.00 45.84 3.77
3832 4778 3.631144 CGGCGTTCGTAAAGACCATATA 58.369 45.455 0.00 0.00 0.00 0.86
3843 4789 1.074319 GTCAATGAGCGGCGTTCGTA 61.074 55.000 18.70 2.34 41.72 3.43
3846 4792 1.421410 ATCGTCAATGAGCGGCGTTC 61.421 55.000 17.19 17.19 0.00 3.95
3855 4801 4.765339 ACCGATGGTATCTATCGTCAATGA 59.235 41.667 12.72 0.00 44.30 2.57
3862 4808 5.879223 ACTACCTTACCGATGGTATCTATCG 59.121 44.000 8.18 8.18 45.12 2.92
3878 4824 6.263842 CGACTACAACATGGGATACTACCTTA 59.736 42.308 0.00 0.00 0.00 2.69
3904 4850 2.475487 GCAACTACACTCTCAACGGTTC 59.525 50.000 0.00 0.00 0.00 3.62
3914 4860 0.618458 TCCCCCATGCAACTACACTC 59.382 55.000 0.00 0.00 0.00 3.51
3931 4879 5.616270 GAGAGACTTTCTAATGGGGAATCC 58.384 45.833 0.00 0.00 35.87 3.01
3944 4892 3.056465 ACTCCCATGTTCGAGAGACTTTC 60.056 47.826 4.31 0.00 41.84 2.62
3966 4914 2.677836 GGCATCAATGTACTTCAGCGAA 59.322 45.455 0.00 0.00 0.00 4.70
3976 4924 3.326836 TCTCACAACGGCATCAATGTA 57.673 42.857 0.00 0.00 0.00 2.29
3986 4934 2.596904 ATATCGGGTTCTCACAACGG 57.403 50.000 0.00 0.00 0.00 4.44
4003 4951 8.366401 TGGATTTGTCATGCTTTCTTTGAAATA 58.634 29.630 0.00 0.00 0.00 1.40
4007 4955 5.068855 TGTGGATTTGTCATGCTTTCTTTGA 59.931 36.000 0.00 0.00 0.00 2.69
4094 5044 0.509499 CGCTTCAAAGGTTTACGCGA 59.491 50.000 15.93 0.00 41.39 5.87
4109 5060 1.327303 TTGCAATGGAAGAACCGCTT 58.673 45.000 0.00 0.00 42.61 4.68
4127 5078 4.031991 CGATTCAATTGATTGCACGCATTT 59.968 37.500 9.40 0.00 37.68 2.32
4133 5084 3.761657 TGCTCGATTCAATTGATTGCAC 58.238 40.909 9.40 0.00 37.68 4.57
4198 5151 6.711277 AGAGAACTAAATGTGCAGGATACAA 58.289 36.000 0.00 0.00 41.41 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.