Multiple sequence alignment - TraesCS6D01G389900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G389900 chr6D 100.000 3661 0 0 1 3661 465076037 465072377 0.000000e+00 6761
1 TraesCS6D01G389900 chr6D 82.549 510 72 14 1 502 372426239 372426739 2.020000e-117 433
2 TraesCS6D01G389900 chr6B 92.766 2972 154 32 711 3661 709529502 709532433 0.000000e+00 4241
3 TraesCS6D01G389900 chr6A 88.789 2997 214 66 713 3660 611716417 611713494 0.000000e+00 3561
4 TraesCS6D01G389900 chr6A 81.818 506 81 9 1 500 13055820 13056320 7.310000e-112 414
5 TraesCS6D01G389900 chr4A 80.000 730 102 20 5 697 515485879 515486601 1.960000e-137 499
6 TraesCS6D01G389900 chr1D 84.134 479 73 3 25 502 389099526 389100002 9.260000e-126 460
7 TraesCS6D01G389900 chr1D 82.869 502 82 4 1 501 68432727 68432229 7.210000e-122 448
8 TraesCS6D01G389900 chr7A 82.731 498 82 4 5 500 507872081 507871586 1.210000e-119 440
9 TraesCS6D01G389900 chr2A 82.565 499 82 5 7 502 134609477 134608981 5.610000e-118 435
10 TraesCS6D01G389900 chr4B 82.400 500 80 8 7 502 99038500 99038005 2.610000e-116 429
11 TraesCS6D01G389900 chr5D 82.329 498 82 6 1 494 453971534 453972029 9.390000e-116 427


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G389900 chr6D 465072377 465076037 3660 True 6761 6761 100.000 1 3661 1 chr6D.!!$R1 3660
1 TraesCS6D01G389900 chr6D 372426239 372426739 500 False 433 433 82.549 1 502 1 chr6D.!!$F1 501
2 TraesCS6D01G389900 chr6B 709529502 709532433 2931 False 4241 4241 92.766 711 3661 1 chr6B.!!$F1 2950
3 TraesCS6D01G389900 chr6A 611713494 611716417 2923 True 3561 3561 88.789 713 3660 1 chr6A.!!$R1 2947
4 TraesCS6D01G389900 chr6A 13055820 13056320 500 False 414 414 81.818 1 500 1 chr6A.!!$F1 499
5 TraesCS6D01G389900 chr4A 515485879 515486601 722 False 499 499 80.000 5 697 1 chr4A.!!$F1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 718 0.036164 TTTGTGATGGGACCGGAGTG 59.964 55.0 9.46 0.00 0.00 3.51 F
698 733 0.938168 GAGTGTCGGGTCAACGTGAC 60.938 60.0 8.94 8.94 46.23 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1865 1.073897 GAGCTTCCCTTGTGGCAGT 59.926 57.895 0.0 0.0 0.00 4.40 R
2691 2760 1.140312 AGGTCCTTCAAGACAGGCAA 58.860 50.000 0.0 0.0 38.59 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.240945 GTTGGTCGCAACAATCCCTG 59.759 55.000 0.00 0.00 35.31 4.45
67 68 2.334977 TCCCTGGTGAGCTTGAAGTAA 58.665 47.619 0.00 0.00 0.00 2.24
82 83 3.195610 TGAAGTAATCATCGTGTGCCTCT 59.804 43.478 0.00 0.00 31.50 3.69
89 90 1.043673 ATCGTGTGCCTCTACTCCCC 61.044 60.000 0.00 0.00 0.00 4.81
165 168 0.328258 CATCCGGGAAAGTTGGGTCT 59.672 55.000 0.00 0.00 0.00 3.85
189 192 4.451435 GGAGCAAAGTAGTCCTTGTACAAC 59.549 45.833 3.59 0.00 32.32 3.32
201 204 0.747852 TGTACAACAGTCGTGCTCCA 59.252 50.000 0.00 0.00 0.00 3.86
202 205 1.137513 GTACAACAGTCGTGCTCCAC 58.862 55.000 0.00 0.00 0.00 4.02
273 276 2.234908 GTTGAGAGTATGCTCCACCTGT 59.765 50.000 7.25 0.00 42.59 4.00
284 287 2.504367 CTCCACCTGTCGGTTCATTTT 58.496 47.619 0.00 0.00 42.13 1.82
291 294 3.815401 CCTGTCGGTTCATTTTCTCTTGT 59.185 43.478 0.00 0.00 0.00 3.16
292 295 4.319766 CCTGTCGGTTCATTTTCTCTTGTG 60.320 45.833 0.00 0.00 0.00 3.33
334 337 2.000447 CCACTTCTTCGTTCGAATCCC 59.000 52.381 0.00 0.00 0.00 3.85
336 339 2.412089 CACTTCTTCGTTCGAATCCCAC 59.588 50.000 0.00 0.00 0.00 4.61
354 357 4.158949 TCCCACGAATCGAAGAACTCATTA 59.841 41.667 10.55 0.00 43.58 1.90
417 424 2.607038 CGACGAAGCATCCGAATCCATA 60.607 50.000 0.00 0.00 0.00 2.74
419 426 2.289072 ACGAAGCATCCGAATCCATAGG 60.289 50.000 0.00 0.00 0.00 2.57
423 430 4.170468 AGCATCCGAATCCATAGGTTTT 57.830 40.909 0.00 0.00 0.00 2.43
464 473 1.522668 ACATGGTCGGACAATGTGTG 58.477 50.000 26.31 6.35 0.00 3.82
502 511 1.153066 TGCAGCCCGAAAGTTGTCA 60.153 52.632 0.00 0.00 0.00 3.58
511 546 3.495193 CCGAAAGTTGTCAGCAATGATG 58.505 45.455 0.00 0.00 36.92 3.07
516 551 0.804364 TTGTCAGCAATGATGTCCGC 59.196 50.000 0.00 0.00 0.00 5.54
517 552 0.321475 TGTCAGCAATGATGTCCGCA 60.321 50.000 0.00 0.00 0.00 5.69
552 587 2.267961 GGGGACTAAGTGCCGGTG 59.732 66.667 1.90 0.00 45.19 4.94
553 588 2.436115 GGGACTAAGTGCCGGTGC 60.436 66.667 1.90 0.00 33.74 5.01
588 623 3.281240 GGAACGACGGTGGAGCTA 58.719 61.111 0.00 0.00 0.00 3.32
589 624 1.153881 GGAACGACGGTGGAGCTAC 60.154 63.158 0.00 0.00 0.00 3.58
590 625 1.513586 GAACGACGGTGGAGCTACG 60.514 63.158 0.00 0.00 0.00 3.51
591 626 1.915614 GAACGACGGTGGAGCTACGA 61.916 60.000 0.00 0.00 0.00 3.43
592 627 1.919956 AACGACGGTGGAGCTACGAG 61.920 60.000 0.00 0.00 0.00 4.18
593 628 2.799371 GACGGTGGAGCTACGAGG 59.201 66.667 6.60 0.00 0.00 4.63
594 629 3.412879 GACGGTGGAGCTACGAGGC 62.413 68.421 6.60 0.00 0.00 4.70
595 630 3.449227 CGGTGGAGCTACGAGGCA 61.449 66.667 0.00 0.00 34.17 4.75
596 631 2.786495 CGGTGGAGCTACGAGGCAT 61.786 63.158 0.00 0.00 34.17 4.40
597 632 1.068250 GGTGGAGCTACGAGGCATC 59.932 63.158 0.00 0.00 34.17 3.91
598 633 1.068250 GTGGAGCTACGAGGCATCC 59.932 63.158 0.00 3.05 33.39 3.51
599 634 2.336809 GGAGCTACGAGGCATCCG 59.663 66.667 0.00 0.00 34.17 4.18
600 635 2.336809 GAGCTACGAGGCATCCGG 59.663 66.667 0.00 0.00 34.17 5.14
601 636 3.850095 GAGCTACGAGGCATCCGGC 62.850 68.421 0.00 0.00 43.74 6.13
609 644 4.838152 GGCATCCGGCGCAGAGAA 62.838 66.667 10.83 0.00 46.16 2.87
610 645 2.819595 GCATCCGGCGCAGAGAAA 60.820 61.111 10.83 0.00 0.00 2.52
611 646 2.817423 GCATCCGGCGCAGAGAAAG 61.817 63.158 10.83 3.92 0.00 2.62
612 647 1.153568 CATCCGGCGCAGAGAAAGA 60.154 57.895 10.83 0.00 0.00 2.52
613 648 0.740868 CATCCGGCGCAGAGAAAGAA 60.741 55.000 10.83 0.00 0.00 2.52
614 649 0.036388 ATCCGGCGCAGAGAAAGAAA 60.036 50.000 10.83 0.00 0.00 2.52
615 650 0.670546 TCCGGCGCAGAGAAAGAAAG 60.671 55.000 10.83 0.00 0.00 2.62
616 651 0.670546 CCGGCGCAGAGAAAGAAAGA 60.671 55.000 10.83 0.00 0.00 2.52
617 652 0.718343 CGGCGCAGAGAAAGAAAGAG 59.282 55.000 10.83 0.00 0.00 2.85
618 653 1.082690 GGCGCAGAGAAAGAAAGAGG 58.917 55.000 10.83 0.00 0.00 3.69
619 654 1.338200 GGCGCAGAGAAAGAAAGAGGA 60.338 52.381 10.83 0.00 0.00 3.71
620 655 1.999024 GCGCAGAGAAAGAAAGAGGAG 59.001 52.381 0.30 0.00 0.00 3.69
621 656 2.353208 GCGCAGAGAAAGAAAGAGGAGA 60.353 50.000 0.30 0.00 0.00 3.71
622 657 3.510719 CGCAGAGAAAGAAAGAGGAGAG 58.489 50.000 0.00 0.00 0.00 3.20
623 658 3.192422 CGCAGAGAAAGAAAGAGGAGAGA 59.808 47.826 0.00 0.00 0.00 3.10
624 659 4.321601 CGCAGAGAAAGAAAGAGGAGAGAA 60.322 45.833 0.00 0.00 0.00 2.87
625 660 4.929211 GCAGAGAAAGAAAGAGGAGAGAAC 59.071 45.833 0.00 0.00 0.00 3.01
626 661 5.510520 GCAGAGAAAGAAAGAGGAGAGAACA 60.511 44.000 0.00 0.00 0.00 3.18
627 662 6.520272 CAGAGAAAGAAAGAGGAGAGAACAA 58.480 40.000 0.00 0.00 0.00 2.83
628 663 6.989169 CAGAGAAAGAAAGAGGAGAGAACAAA 59.011 38.462 0.00 0.00 0.00 2.83
629 664 7.661027 CAGAGAAAGAAAGAGGAGAGAACAAAT 59.339 37.037 0.00 0.00 0.00 2.32
630 665 7.661027 AGAGAAAGAAAGAGGAGAGAACAAATG 59.339 37.037 0.00 0.00 0.00 2.32
631 666 7.512992 AGAAAGAAAGAGGAGAGAACAAATGA 58.487 34.615 0.00 0.00 0.00 2.57
632 667 7.995488 AGAAAGAAAGAGGAGAGAACAAATGAA 59.005 33.333 0.00 0.00 0.00 2.57
633 668 8.525290 AAAGAAAGAGGAGAGAACAAATGAAA 57.475 30.769 0.00 0.00 0.00 2.69
634 669 8.703378 AAGAAAGAGGAGAGAACAAATGAAAT 57.297 30.769 0.00 0.00 0.00 2.17
635 670 8.334263 AGAAAGAGGAGAGAACAAATGAAATC 57.666 34.615 0.00 0.00 0.00 2.17
636 671 6.734104 AAGAGGAGAGAACAAATGAAATCG 57.266 37.500 0.00 0.00 0.00 3.34
637 672 5.181748 AGAGGAGAGAACAAATGAAATCGG 58.818 41.667 0.00 0.00 0.00 4.18
638 673 4.911390 AGGAGAGAACAAATGAAATCGGT 58.089 39.130 0.00 0.00 0.00 4.69
639 674 4.697352 AGGAGAGAACAAATGAAATCGGTG 59.303 41.667 0.00 0.00 0.00 4.94
640 675 4.142600 GGAGAGAACAAATGAAATCGGTGG 60.143 45.833 0.00 0.00 0.00 4.61
641 676 3.758554 AGAGAACAAATGAAATCGGTGGG 59.241 43.478 0.00 0.00 0.00 4.61
642 677 3.496331 AGAACAAATGAAATCGGTGGGT 58.504 40.909 0.00 0.00 0.00 4.51
643 678 3.506067 AGAACAAATGAAATCGGTGGGTC 59.494 43.478 0.00 0.00 0.00 4.46
644 679 1.810151 ACAAATGAAATCGGTGGGTCG 59.190 47.619 0.00 0.00 0.00 4.79
645 680 2.080693 CAAATGAAATCGGTGGGTCGA 58.919 47.619 0.00 0.00 43.61 4.20
646 681 2.024176 AATGAAATCGGTGGGTCGAG 57.976 50.000 0.00 0.00 42.69 4.04
647 682 0.178068 ATGAAATCGGTGGGTCGAGG 59.822 55.000 0.00 0.00 42.69 4.63
648 683 1.153429 GAAATCGGTGGGTCGAGGG 60.153 63.158 0.00 0.00 42.69 4.30
649 684 2.588856 GAAATCGGTGGGTCGAGGGG 62.589 65.000 0.00 0.00 42.69 4.79
650 685 3.918328 AATCGGTGGGTCGAGGGGT 62.918 63.158 0.00 0.00 42.69 4.95
653 688 2.926242 GGTGGGTCGAGGGGTGAA 60.926 66.667 0.00 0.00 0.00 3.18
654 689 2.298661 GGTGGGTCGAGGGGTGAAT 61.299 63.158 0.00 0.00 0.00 2.57
655 690 1.683441 GTGGGTCGAGGGGTGAATT 59.317 57.895 0.00 0.00 0.00 2.17
656 691 0.037734 GTGGGTCGAGGGGTGAATTT 59.962 55.000 0.00 0.00 0.00 1.82
657 692 0.037590 TGGGTCGAGGGGTGAATTTG 59.962 55.000 0.00 0.00 0.00 2.32
658 693 0.037734 GGGTCGAGGGGTGAATTTGT 59.962 55.000 0.00 0.00 0.00 2.83
659 694 1.546998 GGGTCGAGGGGTGAATTTGTT 60.547 52.381 0.00 0.00 0.00 2.83
660 695 1.539827 GGTCGAGGGGTGAATTTGTTG 59.460 52.381 0.00 0.00 0.00 3.33
661 696 1.068541 GTCGAGGGGTGAATTTGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
662 697 0.958091 CGAGGGGTGAATTTGTTGCA 59.042 50.000 0.00 0.00 0.00 4.08
663 698 1.339610 CGAGGGGTGAATTTGTTGCAA 59.660 47.619 0.00 0.00 0.00 4.08
664 699 2.029110 CGAGGGGTGAATTTGTTGCAAT 60.029 45.455 0.59 0.00 0.00 3.56
665 700 3.554752 CGAGGGGTGAATTTGTTGCAATT 60.555 43.478 0.59 0.00 0.00 2.32
666 701 4.388485 GAGGGGTGAATTTGTTGCAATTT 58.612 39.130 0.59 0.00 0.00 1.82
667 702 4.136051 AGGGGTGAATTTGTTGCAATTTG 58.864 39.130 0.59 0.00 0.00 2.32
668 703 3.882288 GGGGTGAATTTGTTGCAATTTGT 59.118 39.130 0.59 0.00 0.00 2.83
669 704 4.261114 GGGGTGAATTTGTTGCAATTTGTG 60.261 41.667 0.59 0.00 0.00 3.33
670 705 4.574013 GGGTGAATTTGTTGCAATTTGTGA 59.426 37.500 0.59 0.00 0.00 3.58
671 706 5.239087 GGGTGAATTTGTTGCAATTTGTGAT 59.761 36.000 0.59 0.00 0.00 3.06
672 707 6.137415 GGTGAATTTGTTGCAATTTGTGATG 58.863 36.000 0.59 0.00 0.00 3.07
673 708 6.137415 GTGAATTTGTTGCAATTTGTGATGG 58.863 36.000 0.59 0.00 0.00 3.51
674 709 5.238868 TGAATTTGTTGCAATTTGTGATGGG 59.761 36.000 0.59 0.00 0.00 4.00
675 710 4.412796 TTTGTTGCAATTTGTGATGGGA 57.587 36.364 0.59 0.00 0.00 4.37
676 711 3.383620 TGTTGCAATTTGTGATGGGAC 57.616 42.857 0.59 0.00 0.00 4.46
677 712 2.036992 TGTTGCAATTTGTGATGGGACC 59.963 45.455 0.59 0.00 0.00 4.46
678 713 0.887247 TGCAATTTGTGATGGGACCG 59.113 50.000 0.00 0.00 0.00 4.79
679 714 0.173255 GCAATTTGTGATGGGACCGG 59.827 55.000 0.00 0.00 0.00 5.28
680 715 1.832883 CAATTTGTGATGGGACCGGA 58.167 50.000 9.46 0.00 0.00 5.14
681 716 1.745087 CAATTTGTGATGGGACCGGAG 59.255 52.381 9.46 0.00 0.00 4.63
682 717 0.991920 ATTTGTGATGGGACCGGAGT 59.008 50.000 9.46 0.00 0.00 3.85
683 718 0.036164 TTTGTGATGGGACCGGAGTG 59.964 55.000 9.46 0.00 0.00 3.51
684 719 1.125093 TTGTGATGGGACCGGAGTGT 61.125 55.000 9.46 0.00 0.00 3.55
685 720 1.218316 GTGATGGGACCGGAGTGTC 59.782 63.158 9.46 0.00 34.42 3.67
686 721 2.348104 TGATGGGACCGGAGTGTCG 61.348 63.158 9.46 0.00 36.07 4.35
693 728 2.048503 CCGGAGTGTCGGGTCAAC 60.049 66.667 0.00 0.00 45.78 3.18
694 729 2.430244 CGGAGTGTCGGGTCAACG 60.430 66.667 0.00 0.00 0.00 4.10
695 730 2.732658 GGAGTGTCGGGTCAACGT 59.267 61.111 0.00 0.00 34.94 3.99
696 731 1.663702 GGAGTGTCGGGTCAACGTG 60.664 63.158 0.00 0.00 34.94 4.49
697 732 1.361271 GAGTGTCGGGTCAACGTGA 59.639 57.895 0.00 0.00 34.94 4.35
698 733 0.938168 GAGTGTCGGGTCAACGTGAC 60.938 60.000 8.94 8.94 46.23 3.67
711 746 2.412421 ACGTGACGTTCCTCTTGTAC 57.588 50.000 4.10 0.00 36.35 2.90
733 768 1.153978 GAACGCACCACCGTATCGA 60.154 57.895 0.00 0.00 41.16 3.59
757 792 4.657824 ACGGACGCAAGGGACACG 62.658 66.667 0.00 0.00 46.39 4.49
953 991 2.350102 CCGACCACGCTTTTAAAACTCC 60.350 50.000 0.00 0.00 38.29 3.85
954 992 2.288458 CGACCACGCTTTTAAAACTCCA 59.712 45.455 0.00 0.00 0.00 3.86
955 993 3.606153 CGACCACGCTTTTAAAACTCCAG 60.606 47.826 0.00 0.00 0.00 3.86
958 996 4.399934 ACCACGCTTTTAAAACTCCAGAAA 59.600 37.500 0.00 0.00 0.00 2.52
963 1001 5.461526 GCTTTTAAAACTCCAGAAATCGCT 58.538 37.500 0.00 0.00 0.00 4.93
978 1016 4.382320 GCTCCCGCGTTACACCCA 62.382 66.667 4.92 0.00 0.00 4.51
982 1020 2.322081 CCCGCGTTACACCCAACAG 61.322 63.158 4.92 0.00 0.00 3.16
984 1022 2.951458 GCGTTACACCCAACAGGC 59.049 61.111 0.00 0.00 40.58 4.85
986 1024 1.241315 GCGTTACACCCAACAGGCAT 61.241 55.000 0.00 0.00 40.58 4.40
990 1034 0.988063 TACACCCAACAGGCATAGCA 59.012 50.000 0.00 0.00 40.58 3.49
1026 1070 2.505118 GAGACGCTCGAGTGTGGC 60.505 66.667 34.60 21.20 39.12 5.01
1443 1487 4.712425 GACCCACGGACGGTGTCG 62.712 72.222 11.69 4.58 45.52 4.35
1727 1771 4.008933 GACCACGGTGCTCCTGCT 62.009 66.667 1.68 0.00 40.48 4.24
1885 1929 4.862092 CGCCGCTCGCAGATGACT 62.862 66.667 0.00 0.00 37.30 3.41
1899 1943 2.665185 GACTCACGGCAGGCGTTT 60.665 61.111 21.14 7.04 0.00 3.60
1929 1973 2.678580 TCGTGGGTCGATCTGGCA 60.679 61.111 0.00 0.00 44.01 4.92
1938 1982 1.406898 GTCGATCTGGCAGAGATGTCA 59.593 52.381 23.24 0.00 41.91 3.58
2092 2148 5.902681 TGACTATATACACTGCCACAGAAC 58.097 41.667 0.78 0.00 35.18 3.01
2112 2170 4.744795 ACCCACAGAGATTACATCACTC 57.255 45.455 0.00 0.00 0.00 3.51
2130 2188 6.558771 TCACTCAACCATCTTTACATGTTG 57.441 37.500 2.30 0.00 0.00 3.33
2245 2304 7.135089 ACAAACCAAATTTACCAACAACAAC 57.865 32.000 0.00 0.00 0.00 3.32
2249 2308 7.745620 ACCAAATTTACCAACAACAACAAAA 57.254 28.000 0.00 0.00 0.00 2.44
2250 2309 8.166422 ACCAAATTTACCAACAACAACAAAAA 57.834 26.923 0.00 0.00 0.00 1.94
2285 2344 2.421073 CACATAACATGCTCACACCTGG 59.579 50.000 0.00 0.00 0.00 4.45
2297 2356 0.182775 ACACCTGGACCAGAAACACC 59.817 55.000 23.77 0.00 32.44 4.16
2301 2360 1.352352 CCTGGACCAGAAACACCTGAT 59.648 52.381 23.77 0.00 36.29 2.90
2302 2361 2.616510 CCTGGACCAGAAACACCTGATC 60.617 54.545 23.77 0.00 36.29 2.92
2322 2383 5.515270 TGATCGAGTCTGTAAATTTACGCTG 59.485 40.000 20.51 14.04 36.45 5.18
2396 2459 5.847111 ACCAACTCCAGAAAGGTAAAAAC 57.153 39.130 0.00 0.00 39.02 2.43
2454 2517 5.486735 TTTCCAGACCGGTACAATCTTAA 57.513 39.130 7.34 0.00 35.57 1.85
2516 2585 1.427819 CAATGTCTAAACGGGCCGC 59.572 57.895 28.71 9.18 0.00 6.53
2517 2586 1.747745 AATGTCTAAACGGGCCGCC 60.748 57.895 28.71 0.00 0.00 6.13
2518 2587 2.193087 AATGTCTAAACGGGCCGCCT 62.193 55.000 28.71 16.18 0.00 5.52
2519 2588 1.332144 ATGTCTAAACGGGCCGCCTA 61.332 55.000 28.71 16.47 0.00 3.93
2520 2589 1.520120 GTCTAAACGGGCCGCCTAC 60.520 63.158 28.71 13.59 0.00 3.18
2521 2590 2.584143 CTAAACGGGCCGCCTACG 60.584 66.667 28.71 7.98 39.67 3.51
2678 2747 2.617274 GCAGCTTCGCCTCCGTTTT 61.617 57.895 0.00 0.00 35.54 2.43
2691 2760 2.489275 CGTTTTGCTGCTGGGTGGT 61.489 57.895 0.00 0.00 0.00 4.16
2745 2816 3.857157 AAAGAGTTACAAGTGCTCCCA 57.143 42.857 0.00 0.00 0.00 4.37
2792 2863 5.725822 AGCCATATGAAAAATTGAAAGGGGA 59.274 36.000 3.65 0.00 0.00 4.81
2970 3042 6.183360 ACAGTAGGGAAATCAGTATAACGCAT 60.183 38.462 0.00 0.00 0.00 4.73
3262 3355 6.744112 TCACCCTTTAATGTTCATTTCACAC 58.256 36.000 3.36 0.00 0.00 3.82
3281 3374 5.290885 TCACACATCATTCTACATTACGCAC 59.709 40.000 0.00 0.00 0.00 5.34
3299 3392 6.737254 ACGCACTAACTATTTGCTTACATT 57.263 33.333 0.00 0.00 33.90 2.71
3336 3447 5.999205 ACCATGCATTGTATCCTTGAAAA 57.001 34.783 0.69 0.00 0.00 2.29
3343 3454 5.622233 GCATTGTATCCTTGAAAACAGGGAC 60.622 44.000 3.36 0.00 33.00 4.46
3361 3472 3.562176 GGGACCACATCAACCTCTTCAAT 60.562 47.826 0.00 0.00 0.00 2.57
3392 3504 5.104374 CGCAAAATGATAACCATGAAGCTT 58.896 37.500 0.00 0.00 35.24 3.74
3396 3508 7.201496 GCAAAATGATAACCATGAAGCTTTGAG 60.201 37.037 0.00 0.00 33.22 3.02
3410 3522 3.868077 AGCTTTGAGAATAGCTTAGCACG 59.132 43.478 7.07 0.00 45.03 5.34
3428 3540 5.484715 AGCACGGTAACACATAAGTACATT 58.515 37.500 0.00 0.00 0.00 2.71
3429 3541 5.350365 AGCACGGTAACACATAAGTACATTG 59.650 40.000 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.164954 CGACCAACTTTCTTTCTCTCCTAG 58.835 45.833 0.00 0.00 0.00 3.02
52 53 4.033358 CACGATGATTACTTCAAGCTCACC 59.967 45.833 0.00 0.00 38.03 4.02
67 68 1.683917 GGAGTAGAGGCACACGATGAT 59.316 52.381 0.00 0.00 0.00 2.45
89 90 0.873743 ATTGTTTTGCGCGTTGTGGG 60.874 50.000 8.43 0.00 0.00 4.61
96 97 0.382880 GCAAACCATTGTTTTGCGCG 60.383 50.000 14.64 0.00 41.92 6.86
128 130 2.465860 TGATCCATGGTTTCGTCGTT 57.534 45.000 12.58 0.00 0.00 3.85
165 168 3.644265 TGTACAAGGACTACTTTGCTCCA 59.356 43.478 0.00 0.00 37.29 3.86
203 206 3.906218 AGTTATTAACCGGGATAGGGACC 59.094 47.826 6.32 0.00 35.02 4.46
205 208 5.083953 AGAGTTATTAACCGGGATAGGGA 57.916 43.478 6.32 0.00 35.02 4.20
273 276 3.003275 GCACACAAGAGAAAATGAACCGA 59.997 43.478 0.00 0.00 0.00 4.69
334 337 6.812481 TGATAATGAGTTCTTCGATTCGTG 57.188 37.500 5.89 1.06 0.00 4.35
336 339 8.065557 TGATTGATAATGAGTTCTTCGATTCG 57.934 34.615 0.00 0.00 0.00 3.34
368 371 3.493699 GGCGTATGGACCAATGTAGCTTA 60.494 47.826 0.00 0.00 0.00 3.09
374 377 0.179084 CGAGGCGTATGGACCAATGT 60.179 55.000 0.00 0.00 0.00 2.71
376 379 0.104304 GACGAGGCGTATGGACCAAT 59.896 55.000 0.00 0.00 41.37 3.16
408 415 6.995511 TTTGTAGGAAAACCTATGGATTCG 57.004 37.500 0.00 0.00 0.00 3.34
446 453 1.807139 TCACACATTGTCCGACCATG 58.193 50.000 10.34 10.34 0.00 3.66
464 473 0.310854 CCTTGCCCTTGACGTGTTTC 59.689 55.000 0.00 0.00 0.00 2.78
471 480 2.924105 GCTGCACCTTGCCCTTGAC 61.924 63.158 0.00 0.00 44.23 3.18
491 500 4.151258 ACATCATTGCTGACAACTTTCG 57.849 40.909 0.00 0.00 38.99 3.46
502 511 2.466982 CGCTGCGGACATCATTGCT 61.467 57.895 15.40 0.00 0.00 3.91
560 595 4.116328 TCGTTCCGAGCCTCAGCG 62.116 66.667 0.00 0.00 46.67 5.18
561 596 2.507324 GTCGTTCCGAGCCTCAGC 60.507 66.667 0.00 0.00 36.23 4.26
562 597 2.202492 CGTCGTTCCGAGCCTCAG 60.202 66.667 0.00 0.00 36.23 3.35
563 598 3.744719 CCGTCGTTCCGAGCCTCA 61.745 66.667 0.00 0.00 36.23 3.86
564 599 3.745803 ACCGTCGTTCCGAGCCTC 61.746 66.667 0.00 0.00 36.23 4.70
565 600 4.052229 CACCGTCGTTCCGAGCCT 62.052 66.667 0.00 0.00 36.23 4.58
567 602 3.966026 CTCCACCGTCGTTCCGAGC 62.966 68.421 0.00 0.00 36.23 5.03
568 603 2.178521 CTCCACCGTCGTTCCGAG 59.821 66.667 0.00 0.00 36.23 4.63
569 604 4.047059 GCTCCACCGTCGTTCCGA 62.047 66.667 0.00 0.00 0.00 4.55
570 605 2.693762 TAGCTCCACCGTCGTTCCG 61.694 63.158 0.00 0.00 0.00 4.30
571 606 1.153881 GTAGCTCCACCGTCGTTCC 60.154 63.158 0.00 0.00 0.00 3.62
572 607 1.513586 CGTAGCTCCACCGTCGTTC 60.514 63.158 0.00 0.00 0.00 3.95
573 608 1.919956 CTCGTAGCTCCACCGTCGTT 61.920 60.000 0.00 0.00 0.00 3.85
574 609 2.359107 TCGTAGCTCCACCGTCGT 60.359 61.111 0.00 0.00 0.00 4.34
575 610 2.403987 CTCGTAGCTCCACCGTCG 59.596 66.667 0.00 0.00 0.00 5.12
576 611 2.799371 CCTCGTAGCTCCACCGTC 59.201 66.667 0.00 0.00 0.00 4.79
577 612 3.450115 GCCTCGTAGCTCCACCGT 61.450 66.667 0.00 0.00 0.00 4.83
578 613 2.685387 GATGCCTCGTAGCTCCACCG 62.685 65.000 0.00 0.00 0.00 4.94
579 614 1.068250 GATGCCTCGTAGCTCCACC 59.932 63.158 0.00 0.00 0.00 4.61
580 615 1.068250 GGATGCCTCGTAGCTCCAC 59.932 63.158 0.00 0.00 33.11 4.02
581 616 2.490148 CGGATGCCTCGTAGCTCCA 61.490 63.158 0.00 0.00 32.69 3.86
582 617 2.336809 CGGATGCCTCGTAGCTCC 59.663 66.667 0.00 4.98 0.00 4.70
583 618 2.336809 CCGGATGCCTCGTAGCTC 59.663 66.667 0.00 0.00 0.00 4.09
584 619 3.917760 GCCGGATGCCTCGTAGCT 61.918 66.667 5.05 0.00 0.00 3.32
592 627 4.838152 TTCTCTGCGCCGGATGCC 62.838 66.667 5.05 0.00 36.24 4.40
593 628 2.817423 CTTTCTCTGCGCCGGATGC 61.817 63.158 5.05 9.32 0.00 3.91
594 629 0.740868 TTCTTTCTCTGCGCCGGATG 60.741 55.000 5.05 0.00 0.00 3.51
595 630 0.036388 TTTCTTTCTCTGCGCCGGAT 60.036 50.000 5.05 0.00 0.00 4.18
596 631 0.670546 CTTTCTTTCTCTGCGCCGGA 60.671 55.000 5.05 1.93 0.00 5.14
597 632 0.670546 TCTTTCTTTCTCTGCGCCGG 60.671 55.000 4.18 0.00 0.00 6.13
598 633 0.718343 CTCTTTCTTTCTCTGCGCCG 59.282 55.000 4.18 0.00 0.00 6.46
599 634 1.082690 CCTCTTTCTTTCTCTGCGCC 58.917 55.000 4.18 0.00 0.00 6.53
600 635 1.999024 CTCCTCTTTCTTTCTCTGCGC 59.001 52.381 0.00 0.00 0.00 6.09
601 636 3.192422 TCTCTCCTCTTTCTTTCTCTGCG 59.808 47.826 0.00 0.00 0.00 5.18
602 637 4.799564 TCTCTCCTCTTTCTTTCTCTGC 57.200 45.455 0.00 0.00 0.00 4.26
603 638 6.095432 TGTTCTCTCCTCTTTCTTTCTCTG 57.905 41.667 0.00 0.00 0.00 3.35
604 639 6.739331 TTGTTCTCTCCTCTTTCTTTCTCT 57.261 37.500 0.00 0.00 0.00 3.10
605 640 7.659390 TCATTTGTTCTCTCCTCTTTCTTTCTC 59.341 37.037 0.00 0.00 0.00 2.87
606 641 7.512992 TCATTTGTTCTCTCCTCTTTCTTTCT 58.487 34.615 0.00 0.00 0.00 2.52
607 642 7.736447 TCATTTGTTCTCTCCTCTTTCTTTC 57.264 36.000 0.00 0.00 0.00 2.62
608 643 8.525290 TTTCATTTGTTCTCTCCTCTTTCTTT 57.475 30.769 0.00 0.00 0.00 2.52
609 644 8.703378 ATTTCATTTGTTCTCTCCTCTTTCTT 57.297 30.769 0.00 0.00 0.00 2.52
610 645 7.118971 CGATTTCATTTGTTCTCTCCTCTTTCT 59.881 37.037 0.00 0.00 0.00 2.52
611 646 7.239972 CGATTTCATTTGTTCTCTCCTCTTTC 58.760 38.462 0.00 0.00 0.00 2.62
612 647 6.150140 CCGATTTCATTTGTTCTCTCCTCTTT 59.850 38.462 0.00 0.00 0.00 2.52
613 648 5.645497 CCGATTTCATTTGTTCTCTCCTCTT 59.355 40.000 0.00 0.00 0.00 2.85
614 649 5.181748 CCGATTTCATTTGTTCTCTCCTCT 58.818 41.667 0.00 0.00 0.00 3.69
615 650 4.938226 ACCGATTTCATTTGTTCTCTCCTC 59.062 41.667 0.00 0.00 0.00 3.71
616 651 4.697352 CACCGATTTCATTTGTTCTCTCCT 59.303 41.667 0.00 0.00 0.00 3.69
617 652 4.142600 CCACCGATTTCATTTGTTCTCTCC 60.143 45.833 0.00 0.00 0.00 3.71
618 653 4.142600 CCCACCGATTTCATTTGTTCTCTC 60.143 45.833 0.00 0.00 0.00 3.20
619 654 3.758554 CCCACCGATTTCATTTGTTCTCT 59.241 43.478 0.00 0.00 0.00 3.10
620 655 3.506067 ACCCACCGATTTCATTTGTTCTC 59.494 43.478 0.00 0.00 0.00 2.87
621 656 3.496331 ACCCACCGATTTCATTTGTTCT 58.504 40.909 0.00 0.00 0.00 3.01
622 657 3.669557 CGACCCACCGATTTCATTTGTTC 60.670 47.826 0.00 0.00 0.00 3.18
623 658 2.227865 CGACCCACCGATTTCATTTGTT 59.772 45.455 0.00 0.00 0.00 2.83
624 659 1.810151 CGACCCACCGATTTCATTTGT 59.190 47.619 0.00 0.00 0.00 2.83
625 660 2.080693 TCGACCCACCGATTTCATTTG 58.919 47.619 0.00 0.00 33.14 2.32
626 661 2.356135 CTCGACCCACCGATTTCATTT 58.644 47.619 0.00 0.00 37.96 2.32
627 662 1.406887 CCTCGACCCACCGATTTCATT 60.407 52.381 0.00 0.00 37.96 2.57
628 663 0.178068 CCTCGACCCACCGATTTCAT 59.822 55.000 0.00 0.00 37.96 2.57
629 664 1.594833 CCTCGACCCACCGATTTCA 59.405 57.895 0.00 0.00 37.96 2.69
630 665 1.153429 CCCTCGACCCACCGATTTC 60.153 63.158 0.00 0.00 37.96 2.17
631 666 2.666098 CCCCTCGACCCACCGATTT 61.666 63.158 0.00 0.00 37.96 2.17
632 667 3.081409 CCCCTCGACCCACCGATT 61.081 66.667 0.00 0.00 37.96 3.34
633 668 4.393778 ACCCCTCGACCCACCGAT 62.394 66.667 0.00 0.00 37.96 4.18
636 671 1.848886 AATTCACCCCTCGACCCACC 61.849 60.000 0.00 0.00 0.00 4.61
637 672 0.037734 AAATTCACCCCTCGACCCAC 59.962 55.000 0.00 0.00 0.00 4.61
638 673 0.037590 CAAATTCACCCCTCGACCCA 59.962 55.000 0.00 0.00 0.00 4.51
639 674 0.037734 ACAAATTCACCCCTCGACCC 59.962 55.000 0.00 0.00 0.00 4.46
640 675 1.539827 CAACAAATTCACCCCTCGACC 59.460 52.381 0.00 0.00 0.00 4.79
641 676 1.068541 GCAACAAATTCACCCCTCGAC 60.069 52.381 0.00 0.00 0.00 4.20
642 677 1.243902 GCAACAAATTCACCCCTCGA 58.756 50.000 0.00 0.00 0.00 4.04
643 678 0.958091 TGCAACAAATTCACCCCTCG 59.042 50.000 0.00 0.00 0.00 4.63
644 679 3.683365 ATTGCAACAAATTCACCCCTC 57.317 42.857 0.00 0.00 0.00 4.30
645 680 4.136051 CAAATTGCAACAAATTCACCCCT 58.864 39.130 0.00 0.00 0.00 4.79
646 681 3.882288 ACAAATTGCAACAAATTCACCCC 59.118 39.130 0.00 0.00 0.00 4.95
647 682 4.574013 TCACAAATTGCAACAAATTCACCC 59.426 37.500 0.00 0.00 0.00 4.61
648 683 5.731599 TCACAAATTGCAACAAATTCACC 57.268 34.783 0.00 0.00 0.00 4.02
649 684 6.137415 CCATCACAAATTGCAACAAATTCAC 58.863 36.000 0.00 0.00 0.00 3.18
650 685 5.238868 CCCATCACAAATTGCAACAAATTCA 59.761 36.000 0.00 0.00 0.00 2.57
651 686 5.469421 TCCCATCACAAATTGCAACAAATTC 59.531 36.000 0.00 0.00 0.00 2.17
652 687 5.239087 GTCCCATCACAAATTGCAACAAATT 59.761 36.000 0.00 0.00 0.00 1.82
653 688 4.756135 GTCCCATCACAAATTGCAACAAAT 59.244 37.500 0.00 0.00 0.00 2.32
654 689 4.125703 GTCCCATCACAAATTGCAACAAA 58.874 39.130 0.00 0.00 0.00 2.83
655 690 3.494048 GGTCCCATCACAAATTGCAACAA 60.494 43.478 0.00 0.00 0.00 2.83
656 691 2.036992 GGTCCCATCACAAATTGCAACA 59.963 45.455 0.00 0.00 0.00 3.33
657 692 2.687370 GGTCCCATCACAAATTGCAAC 58.313 47.619 0.00 0.00 0.00 4.17
658 693 1.271934 CGGTCCCATCACAAATTGCAA 59.728 47.619 0.00 0.00 0.00 4.08
659 694 0.887247 CGGTCCCATCACAAATTGCA 59.113 50.000 0.00 0.00 0.00 4.08
660 695 0.173255 CCGGTCCCATCACAAATTGC 59.827 55.000 0.00 0.00 0.00 3.56
661 696 1.745087 CTCCGGTCCCATCACAAATTG 59.255 52.381 0.00 0.00 0.00 2.32
662 697 1.354368 ACTCCGGTCCCATCACAAATT 59.646 47.619 0.00 0.00 0.00 1.82
663 698 0.991920 ACTCCGGTCCCATCACAAAT 59.008 50.000 0.00 0.00 0.00 2.32
664 699 0.036164 CACTCCGGTCCCATCACAAA 59.964 55.000 0.00 0.00 0.00 2.83
665 700 1.125093 ACACTCCGGTCCCATCACAA 61.125 55.000 0.00 0.00 0.00 3.33
666 701 1.535444 ACACTCCGGTCCCATCACA 60.535 57.895 0.00 0.00 0.00 3.58
667 702 1.218316 GACACTCCGGTCCCATCAC 59.782 63.158 0.00 0.00 0.00 3.06
668 703 2.348104 CGACACTCCGGTCCCATCA 61.348 63.158 0.00 0.00 34.24 3.07
669 704 2.494918 CGACACTCCGGTCCCATC 59.505 66.667 0.00 0.00 34.24 3.51
670 705 3.075005 CCGACACTCCGGTCCCAT 61.075 66.667 0.00 0.00 44.23 4.00
677 712 2.430244 CGTTGACCCGACACTCCG 60.430 66.667 0.00 0.00 0.00 4.63
678 713 1.663702 CACGTTGACCCGACACTCC 60.664 63.158 0.00 0.00 0.00 3.85
679 714 0.938168 GTCACGTTGACCCGACACTC 60.938 60.000 6.82 0.00 41.37 3.51
680 715 1.066918 GTCACGTTGACCCGACACT 59.933 57.895 6.82 0.00 41.37 3.55
681 716 2.297912 CGTCACGTTGACCCGACAC 61.298 63.158 11.01 0.00 44.20 3.67
682 717 2.026445 CGTCACGTTGACCCGACA 59.974 61.111 11.01 0.00 44.20 4.35
683 718 2.026590 ACGTCACGTTGACCCGAC 59.973 61.111 0.00 2.70 44.20 4.79
691 726 5.047838 TGGTACAAGAGGAACGTCACGTT 62.048 47.826 17.23 17.23 45.38 3.99
692 727 1.000938 GGTACAAGAGGAACGTCACGT 60.001 52.381 0.00 0.00 43.97 4.49
693 728 1.001048 TGGTACAAGAGGAACGTCACG 60.001 52.381 0.00 0.00 31.92 4.35
694 729 2.609737 CCTGGTACAAGAGGAACGTCAC 60.610 54.545 0.00 0.00 38.70 3.67
695 730 1.616865 CCTGGTACAAGAGGAACGTCA 59.383 52.381 0.00 0.00 38.70 4.35
696 731 1.891150 TCCTGGTACAAGAGGAACGTC 59.109 52.381 0.00 0.00 38.70 4.34
697 732 2.005370 TCCTGGTACAAGAGGAACGT 57.995 50.000 0.00 0.00 38.70 3.99
700 735 1.001633 GCGTTCCTGGTACAAGAGGAA 59.998 52.381 13.54 13.54 44.52 3.36
701 736 0.606604 GCGTTCCTGGTACAAGAGGA 59.393 55.000 0.00 0.95 38.70 3.71
702 737 0.320374 TGCGTTCCTGGTACAAGAGG 59.680 55.000 0.00 0.00 38.70 3.69
703 738 1.429463 GTGCGTTCCTGGTACAAGAG 58.571 55.000 0.00 0.00 38.70 2.85
704 739 0.034337 GGTGCGTTCCTGGTACAAGA 59.966 55.000 0.00 0.00 38.70 3.02
705 740 0.250124 TGGTGCGTTCCTGGTACAAG 60.250 55.000 4.30 0.00 38.70 3.16
706 741 0.533308 GTGGTGCGTTCCTGGTACAA 60.533 55.000 4.30 0.00 38.70 2.41
707 742 1.070105 GTGGTGCGTTCCTGGTACA 59.930 57.895 4.30 0.00 0.00 2.90
708 743 1.670083 GGTGGTGCGTTCCTGGTAC 60.670 63.158 0.00 0.00 0.00 3.34
709 744 2.745037 GGTGGTGCGTTCCTGGTA 59.255 61.111 0.00 0.00 0.00 3.25
710 745 4.619227 CGGTGGTGCGTTCCTGGT 62.619 66.667 0.00 0.00 0.00 4.00
711 746 2.515996 ATACGGTGGTGCGTTCCTGG 62.516 60.000 0.00 0.00 0.00 4.45
733 768 0.460311 CCCTTGCGTCCGTCTTCTAT 59.540 55.000 0.00 0.00 0.00 1.98
757 792 4.783055 TGGATCCACTACTGACTACTCTC 58.217 47.826 11.44 0.00 0.00 3.20
970 1008 1.352687 TGCTATGCCTGTTGGGTGTAA 59.647 47.619 0.00 0.00 37.43 2.41
978 1016 1.450312 GCTCGGTGCTATGCCTGTT 60.450 57.895 0.00 0.00 38.95 3.16
982 1020 2.962253 GTCGCTCGGTGCTATGCC 60.962 66.667 0.23 0.00 40.11 4.40
984 1022 1.217585 CCATGTCGCTCGGTGCTATG 61.218 60.000 0.23 3.01 40.11 2.23
986 1024 2.004808 CTCCATGTCGCTCGGTGCTA 62.005 60.000 0.23 0.00 40.11 3.49
990 1034 4.148825 GCCTCCATGTCGCTCGGT 62.149 66.667 0.00 0.00 0.00 4.69
1443 1487 2.657102 CTTCCATGAGCTCCTCCGCC 62.657 65.000 12.15 0.00 0.00 6.13
1445 1489 1.445095 CCTTCCATGAGCTCCTCCG 59.555 63.158 12.15 0.00 0.00 4.63
1821 1865 1.073897 GAGCTTCCCTTGTGGCAGT 59.926 57.895 0.00 0.00 0.00 4.40
1827 1871 2.032681 GTGGCGAGCTTCCCTTGT 59.967 61.111 5.36 0.00 0.00 3.16
1899 1943 4.569023 CACGATAGCCTGCGCCGA 62.569 66.667 4.18 0.00 42.67 5.54
1929 1973 4.521062 GGCGCGCCTGACATCTCT 62.521 66.667 41.71 0.00 0.00 3.10
2092 2148 4.743057 TGAGTGATGTAATCTCTGTGGG 57.257 45.455 0.00 0.00 46.25 4.61
2285 2344 2.028930 ACTCGATCAGGTGTTTCTGGTC 60.029 50.000 0.00 0.00 40.50 4.02
2297 2356 5.744345 AGCGTAAATTTACAGACTCGATCAG 59.256 40.000 24.27 7.79 33.28 2.90
2301 2360 4.801891 ACAGCGTAAATTTACAGACTCGA 58.198 39.130 24.27 0.00 33.28 4.04
2302 2361 6.621737 TTACAGCGTAAATTTACAGACTCG 57.378 37.500 24.27 12.66 33.28 4.18
2322 2383 6.988522 ACTGGGTGGAAAATACATTGTTTAC 58.011 36.000 0.00 0.00 0.00 2.01
2409 2472 9.981114 GAAATATAATTGGTTTGGGATGTTAGG 57.019 33.333 0.00 0.00 0.00 2.69
2420 2483 6.192044 ACCGGTCTGGAAATATAATTGGTTT 58.808 36.000 0.00 0.00 42.00 3.27
2476 2539 4.339530 TGCACAGCAAAAACATGGTAGTAA 59.660 37.500 0.00 0.00 34.76 2.24
2517 2586 4.634443 CACCTGGGTAGAAATTTTCCGTAG 59.366 45.833 5.52 0.00 0.00 3.51
2518 2587 4.041938 ACACCTGGGTAGAAATTTTCCGTA 59.958 41.667 5.52 0.00 0.00 4.02
2519 2588 3.181437 ACACCTGGGTAGAAATTTTCCGT 60.181 43.478 5.52 0.00 0.00 4.69
2520 2589 3.418047 ACACCTGGGTAGAAATTTTCCG 58.582 45.455 5.52 0.00 0.00 4.30
2521 2590 3.439129 CGACACCTGGGTAGAAATTTTCC 59.561 47.826 5.52 0.00 0.00 3.13
2546 2615 6.179906 ACAGTCTTTTGGATCTTCTGAAGA 57.820 37.500 21.32 21.32 42.69 2.87
2579 2648 1.461127 GCGACTGATTTTGCGAAGACT 59.539 47.619 0.00 0.00 0.00 3.24
2691 2760 1.140312 AGGTCCTTCAAGACAGGCAA 58.860 50.000 0.00 0.00 38.59 4.52
2745 2816 7.364200 GCTCGATATGTGATAGTACAACTTCT 58.636 38.462 0.00 0.00 33.69 2.85
2792 2863 6.793505 ACTATCGGTTCTCCTTTTACAGAT 57.206 37.500 0.00 0.00 32.74 2.90
2970 3042 7.064847 GCTGCATTCCATTTCATTTATTTGACA 59.935 33.333 0.00 0.00 0.00 3.58
3227 3320 5.360714 ACATTAAAGGGTGATTGCCTACATG 59.639 40.000 0.00 0.00 0.00 3.21
3231 3324 5.575157 TGAACATTAAAGGGTGATTGCCTA 58.425 37.500 0.00 0.00 0.00 3.93
3262 3355 7.700322 AGTTAGTGCGTAATGTAGAATGATG 57.300 36.000 0.00 0.00 0.00 3.07
3336 3447 0.693049 GAGGTTGATGTGGTCCCTGT 59.307 55.000 0.00 0.00 0.00 4.00
3343 3454 6.764308 ACAATATTGAAGAGGTTGATGTGG 57.236 37.500 22.16 0.00 0.00 4.17
3361 3472 5.714047 TGGTTATCATTTTGCGCAACAATA 58.286 33.333 24.99 14.50 38.31 1.90
3392 3504 3.887621 ACCGTGCTAAGCTATTCTCAA 57.112 42.857 0.00 0.00 0.00 3.02
3396 3508 4.178540 TGTGTTACCGTGCTAAGCTATTC 58.821 43.478 0.00 0.00 0.00 1.75
3429 3541 7.466320 GCAACATGCTTGAATGGAAAAATATCC 60.466 37.037 6.60 0.00 40.96 2.59
3461 3573 6.183360 GGTCTCCGACAATGAATAGTAAGTCT 60.183 42.308 0.00 0.00 33.68 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.