Multiple sequence alignment - TraesCS6D01G389200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G389200 chr6D 100.000 9191 0 0 1 9191 464952043 464942853 0.000000e+00 16973.0
1 TraesCS6D01G389200 chr6D 95.455 44 2 0 210 253 464951746 464951703 4.600000e-08 71.3
2 TraesCS6D01G389200 chr6D 95.455 44 2 0 298 341 464951834 464951791 4.600000e-08 71.3
3 TraesCS6D01G389200 chr6A 96.361 8986 216 24 254 9191 611493874 611484952 0.000000e+00 14680.0
4 TraesCS6D01G389200 chr6B 96.657 4577 123 5 1277 5828 708946133 708941562 0.000000e+00 7577.0
5 TraesCS6D01G389200 chr6B 94.893 1782 71 8 5827 7595 708941480 708939706 0.000000e+00 2769.0
6 TraesCS6D01G389200 chr6B 91.883 1577 80 27 7594 9144 708939545 708937991 0.000000e+00 2159.0
7 TraesCS6D01G389200 chr6B 91.034 1305 72 20 1 1269 708947397 708946102 0.000000e+00 1720.0
8 TraesCS6D01G389200 chr4D 79.705 271 46 7 7786 8055 126657552 126657290 4.380000e-43 187.0
9 TraesCS6D01G389200 chr5B 81.699 153 27 1 7786 7938 430146877 430146726 9.690000e-25 126.0
10 TraesCS6D01G389200 chr5B 81.699 153 27 1 7786 7938 430153585 430153434 9.690000e-25 126.0
11 TraesCS6D01G389200 chr5B 81.699 153 27 1 7786 7938 430252003 430251852 9.690000e-25 126.0
12 TraesCS6D01G389200 chr5B 96.970 33 1 0 3806 3838 235793919 235793887 1.000000e-03 56.5
13 TraesCS6D01G389200 chr2B 96.970 33 1 0 3806 3838 262746945 262746913 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G389200 chr6D 464942853 464952043 9190 True 5705.20 16973 96.97000 1 9191 3 chr6D.!!$R1 9190
1 TraesCS6D01G389200 chr6A 611484952 611493874 8922 True 14680.00 14680 96.36100 254 9191 1 chr6A.!!$R1 8937
2 TraesCS6D01G389200 chr6B 708937991 708947397 9406 True 3556.25 7577 93.61675 1 9144 4 chr6B.!!$R1 9143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 597 0.036388 GCGAAACATGTCCCTCTCCA 60.036 55.000 0.00 0.00 0.00 3.86 F
1275 1321 0.046552 TAGGGTTGGGGGATGGCTTA 59.953 55.000 0.00 0.00 0.00 3.09 F
2528 2592 0.322975 ATGGCATACGAGGGAGATGC 59.677 55.000 0.00 0.00 44.24 3.91 F
3371 3444 1.315690 AATGCTGGAATCGCATCAGG 58.684 50.000 0.00 0.00 46.62 3.86 F
3608 3681 1.349026 ACCTCATTCACAGTCCACAGG 59.651 52.381 0.00 0.00 0.00 4.00 F
4314 4387 2.541233 ACAGTAGAGGAGGTGCAGAT 57.459 50.000 0.00 0.00 0.00 2.90 F
4623 4696 0.965866 TGTACAGGCCTGAGGAGTCG 60.966 60.000 39.19 10.62 0.00 4.18 F
5529 5602 1.555967 GCCTACATTTGGCCAAGGAA 58.444 50.000 22.34 7.72 44.32 3.36 F
6467 6624 0.466189 CATGATCCGGAACCCAAGGG 60.466 60.000 9.01 2.91 42.03 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2561 2625 0.110486 TGAGGGGTTTGAGAACAGCC 59.890 55.000 0.00 0.00 37.51 4.85 R
2562 2626 1.528129 CTGAGGGGTTTGAGAACAGC 58.472 55.000 0.00 0.00 37.51 4.40 R
3780 3853 0.106268 TTTTGCAGTGCCCTCCAGAA 60.106 50.000 13.72 0.00 0.00 3.02 R
4232 4305 0.250901 ATGGGCTGCACGTTTCTTCT 60.251 50.000 0.50 0.00 0.00 2.85 R
4596 4669 3.448686 CTCAGGCCTGTACATTACTTCG 58.551 50.000 31.58 1.72 0.00 3.79 R
5842 5999 1.048601 GGACCACACAGAGGAACAGA 58.951 55.000 0.00 0.00 0.00 3.41 R
5886 6043 1.239968 GCACACCTTGAGCTTCCCAG 61.240 60.000 0.00 0.00 31.18 4.45 R
7347 7516 1.341383 CCTGAACCTTCTTCCATGGGG 60.341 57.143 13.02 7.20 0.00 4.96 R
8385 8741 5.106712 TGCAACGATGATGATGATGATGATG 60.107 40.000 0.00 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.707298 ACATCACAAGTCACTAAATCCCTTG 59.293 40.000 0.00 0.00 38.71 3.61
59 60 9.554724 GCGTGAATCTCAAAGTTTTATATTGAA 57.445 29.630 0.00 0.00 33.08 2.69
107 108 2.311542 AGAGAGACATGGAGACTCCTGT 59.688 50.000 22.14 20.98 39.43 4.00
130 131 2.672961 TCTCTGTGGTAGAATTGCGG 57.327 50.000 0.00 0.00 34.32 5.69
149 150 3.120199 GCGGATTGTCCATACATGTATGC 60.120 47.826 31.96 22.45 41.10 3.14
229 230 1.138859 GGGCCCATATGAAAACTTGGC 59.861 52.381 19.95 6.32 36.68 4.52
272 273 4.653801 GGTAGGGCCCATATGAAAATTTGT 59.346 41.667 27.56 0.00 0.00 2.83
329 330 2.467566 AACTTGGCGTGTTACTAGGG 57.532 50.000 0.00 0.00 0.00 3.53
331 332 1.274447 ACTTGGCGTGTTACTAGGGTC 59.726 52.381 0.00 0.00 0.00 4.46
338 339 2.440409 GTGTTACTAGGGTCTGTCGGA 58.560 52.381 0.00 0.00 0.00 4.55
472 496 0.042013 TAGTTTTGGCGCGAAACACG 60.042 50.000 28.24 0.00 39.46 4.49
571 597 0.036388 GCGAAACATGTCCCTCTCCA 60.036 55.000 0.00 0.00 0.00 3.86
603 636 0.395173 GGACCGGGCATTAACCACAT 60.395 55.000 11.00 0.00 0.00 3.21
621 654 4.620937 GCCTAATCCGGGCCGTCC 62.621 72.222 26.32 0.56 43.49 4.79
1275 1321 0.046552 TAGGGTTGGGGGATGGCTTA 59.953 55.000 0.00 0.00 0.00 3.09
1542 1588 1.202568 CGCCGCTGAGAATTATGCG 59.797 57.895 0.00 0.00 46.74 4.73
1586 1635 1.078848 CCAGGAGGTCAAAGGCGAG 60.079 63.158 0.00 0.00 0.00 5.03
1671 1735 2.040544 CGTTGGAGAATTGGCGGCT 61.041 57.895 11.43 0.00 0.00 5.52
1761 1825 2.036604 TGCGGATGATGGTTTATCGCTA 59.963 45.455 0.00 0.00 38.71 4.26
1967 2031 1.805943 TGATGGTGTTTCTGATGCACG 59.194 47.619 0.00 0.00 34.25 5.34
2059 2123 4.586841 CACCAACCATCAAAAGGAAACCTA 59.413 41.667 0.00 0.00 31.13 3.08
2349 2413 0.461339 CTTATGGGGTTCGTGGGTCG 60.461 60.000 0.00 0.00 41.41 4.79
2350 2414 1.193462 TTATGGGGTTCGTGGGTCGT 61.193 55.000 0.00 0.00 40.80 4.34
2411 2475 5.907945 CAGCATCTGCAAAAGAAATCGATAG 59.092 40.000 0.00 0.00 45.16 2.08
2481 2545 0.390124 AGGTGAAACGCCTAACACGA 59.610 50.000 1.81 0.00 43.18 4.35
2528 2592 0.322975 ATGGCATACGAGGGAGATGC 59.677 55.000 0.00 0.00 44.24 3.91
2777 2841 3.674997 TGGAGTGCAGGTACTTTTGATC 58.325 45.455 0.00 0.00 34.60 2.92
2780 2844 4.154918 GGAGTGCAGGTACTTTTGATCTTG 59.845 45.833 0.00 0.00 34.60 3.02
2820 2884 5.076873 TGCTACATGCCCTAGTTTCTTTTT 58.923 37.500 0.00 0.00 42.00 1.94
2853 2917 5.920193 ATTAACTGCACCATGCTTTATGT 57.080 34.783 2.02 0.00 45.31 2.29
2909 2973 7.397221 TCTGTATTCACTTCAGGAACATGATT 58.603 34.615 0.00 0.00 0.00 2.57
3226 3298 2.830651 ACCAGTTCCTAGATCTCCGT 57.169 50.000 0.00 0.00 0.00 4.69
3227 3299 3.103080 ACCAGTTCCTAGATCTCCGTT 57.897 47.619 0.00 0.00 0.00 4.44
3233 3305 6.238703 CCAGTTCCTAGATCTCCGTTTACTAC 60.239 46.154 0.00 0.00 0.00 2.73
3237 3309 9.065798 GTTCCTAGATCTCCGTTTACTACTAAT 57.934 37.037 0.00 0.00 0.00 1.73
3371 3444 1.315690 AATGCTGGAATCGCATCAGG 58.684 50.000 0.00 0.00 46.62 3.86
3417 3490 3.808728 TCTTTGTTCTGAGGTTGTGGAG 58.191 45.455 0.00 0.00 0.00 3.86
3594 3667 2.846206 TGCCCAAGAGTTGATACCTCAT 59.154 45.455 0.00 0.00 0.00 2.90
3596 3669 3.879892 GCCCAAGAGTTGATACCTCATTC 59.120 47.826 0.00 0.00 0.00 2.67
3605 3678 4.471904 TGATACCTCATTCACAGTCCAC 57.528 45.455 0.00 0.00 0.00 4.02
3608 3681 1.349026 ACCTCATTCACAGTCCACAGG 59.651 52.381 0.00 0.00 0.00 4.00
3780 3853 9.520515 AACTGTGAGGTAAATCATAAAGTTGAT 57.479 29.630 0.00 0.00 37.96 2.57
3945 4018 3.678056 ACATCGCTTTCAGTTCCTGTA 57.322 42.857 0.00 0.00 32.61 2.74
4232 4305 7.127186 TGAGGATGGATTGGAATACACTCTTAA 59.873 37.037 4.64 0.00 30.62 1.85
4269 4342 2.954318 CCATGCTATTTCTTCTGTGGGG 59.046 50.000 0.00 0.00 0.00 4.96
4314 4387 2.541233 ACAGTAGAGGAGGTGCAGAT 57.459 50.000 0.00 0.00 0.00 2.90
4596 4669 9.341899 GATGTTCAGTTAAATCATGTTGTAACC 57.658 33.333 11.63 0.64 0.00 2.85
4623 4696 0.965866 TGTACAGGCCTGAGGAGTCG 60.966 60.000 39.19 10.62 0.00 4.18
4806 4879 2.629617 CAGGCTTGGATTTGGTGTTCTT 59.370 45.455 0.00 0.00 0.00 2.52
4945 5018 2.972505 CAGTCGGCGCACCAGTTT 60.973 61.111 10.83 0.00 34.57 2.66
5442 5515 3.789756 GCAAAAACTCATCTGATGCATCG 59.210 43.478 21.34 15.63 32.80 3.84
5529 5602 1.555967 GCCTACATTTGGCCAAGGAA 58.444 50.000 22.34 7.72 44.32 3.36
5811 5886 2.158914 TCGCTTGTCTGGTATGCATCAT 60.159 45.455 0.19 0.00 0.00 2.45
5886 6043 2.240500 CGTTGCTCCGATGCTAGGC 61.241 63.158 0.00 0.00 0.00 3.93
5892 6049 1.382557 TCCGATGCTAGGCTGGGAA 60.383 57.895 0.00 0.00 0.00 3.97
6200 6357 6.387041 AGAAGTTTTCCGTAAAGAAAAGGG 57.613 37.500 0.00 0.00 44.23 3.95
6201 6358 4.579454 AGTTTTCCGTAAAGAAAAGGGC 57.421 40.909 0.00 0.00 44.23 5.19
6467 6624 0.466189 CATGATCCGGAACCCAAGGG 60.466 60.000 9.01 2.91 42.03 3.95
6580 6738 7.713942 AGGTTCGTCAGTAACACTTTCTTATTT 59.286 33.333 0.00 0.00 0.00 1.40
6632 6792 6.764308 AATCAGACAAGTGTAATTGATGGG 57.236 37.500 0.00 0.00 34.20 4.00
6705 6874 2.807967 TGAAACAGAATTCAGAGTGCCG 59.192 45.455 8.44 0.00 34.50 5.69
6915 7084 1.156645 CCGCAGAGGCAGTGATAAGC 61.157 60.000 0.00 0.00 41.24 3.09
7794 8142 6.455647 GCATAGTGCATTAGGTCATGTAGTA 58.544 40.000 2.80 0.00 44.26 1.82
8103 8459 9.622004 GTTGCTTCTTTATAAGTTTTAACCCTC 57.378 33.333 0.00 0.00 0.00 4.30
8229 8585 1.394917 GCTGTTACATGTGGAGAAGCG 59.605 52.381 9.11 0.00 0.00 4.68
8383 8739 7.194112 TGTATTGAAGTTGATATCACCTCCA 57.806 36.000 4.48 0.00 0.00 3.86
8384 8740 7.805163 TGTATTGAAGTTGATATCACCTCCAT 58.195 34.615 4.48 2.91 0.00 3.41
8385 8741 7.933577 TGTATTGAAGTTGATATCACCTCCATC 59.066 37.037 4.48 0.00 0.00 3.51
8734 9091 4.333649 CCTAACTCATAGTCGGTCGTGTTA 59.666 45.833 0.00 0.00 0.00 2.41
8744 9102 2.118683 CGGTCGTGTTAAAAGTCGTCA 58.881 47.619 0.00 0.00 0.00 4.35
8797 9155 1.345741 TGCTGCAGCCCTCTGTATATC 59.654 52.381 34.64 4.17 42.29 1.63
8829 9187 6.934645 GCTGCTTATACTGGTCACCATTTATA 59.065 38.462 0.00 0.00 30.82 0.98
8936 9294 1.093159 CCATCTGGTTCTTGCTGAGC 58.907 55.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.420893 TCACGCTCATTTCAAGGGATTT 58.579 40.909 0.00 0.00 0.00 2.17
26 27 5.288543 ACTTTGAGATTCACGCTCATTTC 57.711 39.130 0.00 0.00 41.60 2.17
59 60 3.581332 TCCGTCATACCCTTTCTTGTTCT 59.419 43.478 0.00 0.00 0.00 3.01
107 108 5.105106 TCCGCAATTCTACCACAGAGAAATA 60.105 40.000 0.00 0.00 36.54 1.40
130 131 6.914215 CACTTTGCATACATGTATGGACAATC 59.086 38.462 35.42 22.85 42.30 2.67
168 169 4.003011 TTTTTCGTGGCGCGGTCG 62.003 61.111 21.40 6.22 41.72 4.79
197 198 1.920734 ATGGGCCCAACGCTACATCA 61.921 55.000 32.58 0.00 37.74 3.07
229 230 0.097674 CGACGGACCCTAGTAACACG 59.902 60.000 0.00 0.00 0.00 4.49
272 273 1.541147 CAACGGACCCTAGTAACACGA 59.459 52.381 0.00 0.00 0.00 4.35
338 339 2.570135 GTCCTCGGTAGAAGACGGTAT 58.430 52.381 0.00 0.00 29.31 2.73
410 434 5.640783 GTGTCGTAAAGGTACCATTAAAGCT 59.359 40.000 15.94 0.00 0.00 3.74
418 442 3.815856 TGTTGTGTCGTAAAGGTACCA 57.184 42.857 15.94 0.00 0.00 3.25
489 513 1.252215 TGCTGGGTAATCGTCGGACA 61.252 55.000 9.10 0.00 0.00 4.02
560 586 1.606601 CTCGTGGTGGAGAGGGACA 60.607 63.158 0.00 0.00 36.08 4.02
627 660 4.816984 ATCCGGGCCGTCGAGACT 62.817 66.667 26.32 0.00 0.00 3.24
683 716 4.806640 AATGGGTTTGCTGAAATACCAG 57.193 40.909 0.00 0.00 35.60 4.00
850 885 4.129148 GTGGGGTGGGATGGGAGC 62.129 72.222 0.00 0.00 0.00 4.70
1250 1296 2.135189 CATCCCCCAACCCTAGATCAA 58.865 52.381 0.00 0.00 0.00 2.57
1275 1321 2.420466 AATCACCGCCGGGACCTTTT 62.420 55.000 8.57 0.00 36.97 2.27
1338 1384 3.921767 CTGCTGCCGAGTCTTGCGA 62.922 63.158 0.00 0.00 0.00 5.10
1497 1543 1.482930 GCCCTCATCTCCTCCATCTCT 60.483 57.143 0.00 0.00 0.00 3.10
1542 1588 0.458669 CATCACCTGCCATTGCCTTC 59.541 55.000 0.00 0.00 36.33 3.46
1562 1608 0.247736 CTTTGACCTCCTGGGAGACG 59.752 60.000 17.36 4.99 44.53 4.18
1691 1755 1.208052 TCTCATCGGGCTTCCTTTCTG 59.792 52.381 0.00 0.00 0.00 3.02
1692 1756 1.573108 TCTCATCGGGCTTCCTTTCT 58.427 50.000 0.00 0.00 0.00 2.52
1761 1825 0.246086 CTTGCAGAAGCGTCTCTCCT 59.754 55.000 0.00 0.00 46.23 3.69
1945 2009 2.816087 GTGCATCAGAAACACCATCAGT 59.184 45.455 0.00 0.00 0.00 3.41
1967 2031 0.804989 CAAGGTTTCGGAGCATGTCC 59.195 55.000 0.00 0.00 42.85 4.02
2059 2123 2.540973 GCGCTTCTTTTGGTTTTCGACT 60.541 45.455 0.00 0.00 0.00 4.18
2349 2413 0.387239 GTGAATCCTTTGCGGCACAC 60.387 55.000 0.05 1.62 0.00 3.82
2350 2414 1.851021 CGTGAATCCTTTGCGGCACA 61.851 55.000 0.05 0.00 0.00 4.57
2358 2422 1.347707 TGAGAGGCACGTGAATCCTTT 59.652 47.619 22.23 11.65 0.00 3.11
2411 2475 2.126734 GTGCTGCCACGTCAATGC 60.127 61.111 0.00 0.00 31.34 3.56
2481 2545 7.879160 TCACCATGTTTACGTTTCCTAGTATTT 59.121 33.333 0.00 0.00 0.00 1.40
2528 2592 3.349927 TGCATCAGAGTTTCCCAATCAG 58.650 45.455 0.00 0.00 0.00 2.90
2560 2624 0.609406 GAGGGGTTTGAGAACAGCCC 60.609 60.000 0.00 0.00 40.09 5.19
2561 2625 0.110486 TGAGGGGTTTGAGAACAGCC 59.890 55.000 0.00 0.00 37.51 4.85
2562 2626 1.528129 CTGAGGGGTTTGAGAACAGC 58.472 55.000 0.00 0.00 37.51 4.40
2777 2841 6.076981 AGCAAACATTAGAGGACAAACAAG 57.923 37.500 0.00 0.00 0.00 3.16
2780 2844 6.554334 TGTAGCAAACATTAGAGGACAAAC 57.446 37.500 0.00 0.00 31.43 2.93
2820 2884 6.641169 TGGTGCAGTTAATTTATTGTCACA 57.359 33.333 12.62 0.00 0.00 3.58
2853 2917 5.589855 CAGTAACATGATGCAGGGTAAATCA 59.410 40.000 0.00 0.00 34.96 2.57
2909 2973 4.202461 ACATCCTTGTTCCAGCAACTTAGA 60.202 41.667 0.00 0.00 35.79 2.10
3214 3286 8.851541 AGATTAGTAGTAAACGGAGATCTAGG 57.148 38.462 0.00 0.00 0.00 3.02
3339 3412 6.073222 CGATTCCAGCATTTATGTAACCCTAC 60.073 42.308 0.00 0.00 0.00 3.18
3371 3444 2.954611 GACCCTTTGTCGCCTTGC 59.045 61.111 0.00 0.00 33.49 4.01
3417 3490 7.640597 AGGTAATTCATTTAACTTGGCTACC 57.359 36.000 0.00 0.00 33.95 3.18
3605 3678 4.279169 TCTTTTCTTCAAATGCCTGTCCTG 59.721 41.667 0.00 0.00 0.00 3.86
3608 3681 6.685657 AGATTCTTTTCTTCAAATGCCTGTC 58.314 36.000 0.00 0.00 0.00 3.51
3780 3853 0.106268 TTTTGCAGTGCCCTCCAGAA 60.106 50.000 13.72 0.00 0.00 3.02
3945 4018 6.364701 TGTAATAATGCTAGCACCCAAATCT 58.635 36.000 22.07 0.00 0.00 2.40
4215 4288 8.936864 CGTTTCTTCTTAAGAGTGTATTCCAAT 58.063 33.333 5.12 0.00 39.03 3.16
4232 4305 0.250901 ATGGGCTGCACGTTTCTTCT 60.251 50.000 0.50 0.00 0.00 2.85
4314 4387 8.954950 TTTCTGTTGAAGCATTTTTGGAAATA 57.045 26.923 0.00 0.00 32.51 1.40
4596 4669 3.448686 CTCAGGCCTGTACATTACTTCG 58.551 50.000 31.58 1.72 0.00 3.79
4945 5018 6.650120 CCTTCCCAACAAGTAGAGCTATTAA 58.350 40.000 0.00 0.00 0.00 1.40
5442 5515 3.735237 TCCTTGCTAGCTACTGCATAC 57.265 47.619 17.23 0.00 42.74 2.39
5529 5602 3.544698 TCTGGAGGGAGTTTCAGTAGT 57.455 47.619 0.00 0.00 0.00 2.73
5842 5999 1.048601 GGACCACACAGAGGAACAGA 58.951 55.000 0.00 0.00 0.00 3.41
5886 6043 1.239968 GCACACCTTGAGCTTCCCAG 61.240 60.000 0.00 0.00 31.18 4.45
6467 6624 4.036027 CAGACATAACCATGCCTTGATCAC 59.964 45.833 0.00 0.00 35.39 3.06
6705 6874 7.010923 CCATCAGAAAGTAGAAGTTCTGCATAC 59.989 40.741 21.12 9.23 46.79 2.39
6821 6990 7.416213 GCAACCAACAAGCCAATAAGATATACA 60.416 37.037 0.00 0.00 0.00 2.29
6942 7111 4.317488 GCCTTGCAAAATCTCCAAATGAA 58.683 39.130 0.00 0.00 0.00 2.57
7347 7516 1.341383 CCTGAACCTTCTTCCATGGGG 60.341 57.143 13.02 7.20 0.00 4.96
7951 8302 5.586643 CCCTGAAAAATCAGTAAGGTAGAGC 59.413 44.000 5.23 0.00 36.06 4.09
8383 8739 6.183360 GCAACGATGATGATGATGATGATGAT 60.183 38.462 0.00 0.00 0.00 2.45
8384 8740 5.121768 GCAACGATGATGATGATGATGATGA 59.878 40.000 0.00 0.00 0.00 2.92
8385 8741 5.106712 TGCAACGATGATGATGATGATGATG 60.107 40.000 0.00 0.00 0.00 3.07
8734 9091 0.379316 GCCAAACCGTGACGACTTTT 59.621 50.000 6.54 0.00 0.00 2.27
8744 9102 2.046314 CCATCTCCGCCAAACCGT 60.046 61.111 0.00 0.00 0.00 4.83
8975 9334 7.628769 AAAAAGGCAAAAGCATAATAATGGG 57.371 32.000 0.00 0.00 33.38 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.