Multiple sequence alignment - TraesCS6D01G388100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G388100 chr6D 100.000 6771 0 0 1 6771 464725325 464718555 0.000000e+00 12504
1 TraesCS6D01G388100 chr6D 92.661 109 8 0 1 109 147675677 147675569 2.530000e-34 158
2 TraesCS6D01G388100 chr6D 91.964 112 9 0 1 112 366701213 366701102 2.530000e-34 158
3 TraesCS6D01G388100 chr6D 92.523 107 7 1 3 108 456555447 456555553 1.180000e-32 152
4 TraesCS6D01G388100 chr6D 96.250 80 3 0 1187 1266 464731942 464731863 1.530000e-26 132
5 TraesCS6D01G388100 chr6B 92.924 5017 246 53 889 5858 708662885 708657931 0.000000e+00 7197
6 TraesCS6D01G388100 chr6A 96.254 2990 99 7 2442 5426 611300893 611297912 0.000000e+00 4889
7 TraesCS6D01G388100 chr6A 89.558 2126 135 30 2 2101 611303361 611301297 0.000000e+00 2615
8 TraesCS6D01G388100 chr6A 92.233 618 32 13 5368 5981 611297749 611297144 0.000000e+00 861
9 TraesCS6D01G388100 chr6A 95.575 339 14 1 2177 2514 611301195 611300857 5.970000e-150 542
10 TraesCS6D01G388100 chr6A 95.745 47 0 1 6724 6770 611296169 611296125 2.620000e-09 75
11 TraesCS6D01G388100 chr5A 91.892 111 9 0 1 111 487063271 487063161 9.090000e-34 156
12 TraesCS6D01G388100 chr1A 92.593 108 8 0 1 108 329250141 329250248 9.090000e-34 156
13 TraesCS6D01G388100 chr3A 92.593 108 7 1 1 108 455782933 455782827 3.270000e-33 154
14 TraesCS6D01G388100 chr7D 91.743 109 9 0 1 109 199358596 199358704 1.180000e-32 152
15 TraesCS6D01G388100 chr1D 91.667 108 9 0 1 108 408872412 408872519 4.230000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G388100 chr6D 464718555 464725325 6770 True 12504.0 12504 100.000 1 6771 1 chr6D.!!$R3 6770
1 TraesCS6D01G388100 chr6B 708657931 708662885 4954 True 7197.0 7197 92.924 889 5858 1 chr6B.!!$R1 4969
2 TraesCS6D01G388100 chr6A 611296125 611303361 7236 True 1796.4 4889 93.873 2 6770 5 chr6A.!!$R1 6768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 663 0.466372 TTGAAACATGGACGTGCCCA 60.466 50.0 4.04 0.54 41.05 5.36 F
1459 1495 0.249676 CTCACTGCTCACCAGATGCT 59.750 55.0 0.00 0.00 44.64 3.79 F
2367 2461 0.106918 AAGGCTTCCGGTTTGACACA 60.107 50.0 0.00 0.00 0.00 3.72 F
2516 2646 1.268283 GCTACTCCTTCTGGCACCCT 61.268 60.0 0.00 0.00 0.00 4.34 F
4402 4535 0.954452 GAGACCACCAAAACCTGCTG 59.046 55.0 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1752 0.035056 GGCTATGCACTTGACCACCT 60.035 55.000 0.0 0.0 0.00 4.00 R
2451 2545 0.969409 AAGGAGCAGCTTTGGATGGC 60.969 55.000 0.0 0.0 0.00 4.40 R
3681 3814 1.305623 CTGCCTTCCAGCTTCCCAT 59.694 57.895 0.0 0.0 34.21 4.00 R
4430 4563 1.009829 GCCATTAGTCTGTTCCGCTG 58.990 55.000 0.0 0.0 0.00 5.18 R
5994 6400 0.112995 AATCCCAGGAGCACAAGCAA 59.887 50.000 0.0 0.0 45.49 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.047660 AGGAGAAATGGATGTATCTAGACGC 60.048 44.000 0.00 0.00 0.00 5.19
53 54 8.804688 ATGTATCTAGACGCATTTTAGTTCTC 57.195 34.615 0.00 0.00 0.00 2.87
80 81 9.171877 GATACATCCATCTTTATCCATTTCTCC 57.828 37.037 0.00 0.00 0.00 3.71
92 93 3.813166 TCCATTTCTCCGACAAGTGTTTC 59.187 43.478 0.00 0.00 0.00 2.78
154 155 5.946486 AGGAGAAATTTCACTTCACCTCTT 58.054 37.500 19.99 0.33 38.94 2.85
222 232 3.991051 CACGGAGCACCACGTCCT 61.991 66.667 0.00 0.00 42.04 3.85
255 265 1.112113 ACCAAGCATAGTCGACCGAT 58.888 50.000 13.01 3.03 0.00 4.18
277 287 3.003482 TGCATTGTCCAATTTTGCTTTGC 59.997 39.130 5.88 0.00 0.00 3.68
298 308 2.543445 CGGCTTTGTGCTTCATGAACAA 60.543 45.455 3.38 5.68 42.19 2.83
335 345 1.003580 CCCACTGCAACACTATCAGGT 59.996 52.381 0.00 0.00 32.42 4.00
336 346 2.350522 CCACTGCAACACTATCAGGTC 58.649 52.381 0.00 0.00 32.42 3.85
338 348 2.738846 CACTGCAACACTATCAGGTCAC 59.261 50.000 0.00 0.00 32.42 3.67
354 364 5.014123 TCAGGTCACCCTAGAACATCAAATT 59.986 40.000 0.00 0.00 39.89 1.82
394 404 5.633117 TGCAAAGATATATCCATGCCTCAA 58.367 37.500 25.72 12.69 37.81 3.02
411 421 4.464008 CCTCAATTTGGGCTTAGCATAGA 58.536 43.478 6.53 0.00 0.00 1.98
412 422 5.075493 CCTCAATTTGGGCTTAGCATAGAT 58.925 41.667 6.53 0.00 0.00 1.98
413 423 5.537674 CCTCAATTTGGGCTTAGCATAGATT 59.462 40.000 6.53 0.00 0.00 2.40
414 424 6.041296 CCTCAATTTGGGCTTAGCATAGATTT 59.959 38.462 6.53 0.00 0.00 2.17
415 425 7.418254 CCTCAATTTGGGCTTAGCATAGATTTT 60.418 37.037 6.53 0.00 0.00 1.82
416 426 8.532186 TCAATTTGGGCTTAGCATAGATTTTA 57.468 30.769 6.53 0.00 0.00 1.52
417 427 9.146586 TCAATTTGGGCTTAGCATAGATTTTAT 57.853 29.630 6.53 0.00 0.00 1.40
429 439 7.106239 AGCATAGATTTTATTACTCCCATCCG 58.894 38.462 0.00 0.00 0.00 4.18
499 509 9.733556 TCTATTGTCTTGGCTGAAGTAATAAAA 57.266 29.630 0.00 0.00 32.90 1.52
549 559 4.556233 TCGATTGTCGACTTCACTTTCAT 58.444 39.130 17.92 0.00 44.82 2.57
638 650 3.675698 CCAGCGAAGAGTAGACTTGAAAC 59.324 47.826 0.00 0.00 0.00 2.78
651 663 0.466372 TTGAAACATGGACGTGCCCA 60.466 50.000 4.04 0.54 41.05 5.36
674 686 1.955080 ACCGGCGAAGAGTAGAATAGG 59.045 52.381 9.30 0.00 0.00 2.57
717 737 5.771602 AAAATGTTTGGTGTGTTCGTTTC 57.228 34.783 0.00 0.00 0.00 2.78
725 745 2.223377 GGTGTGTTCGTTTCAGTGATCC 59.777 50.000 0.00 0.00 0.00 3.36
751 771 2.504175 TGGAGTTGCCATAACCCTAGAC 59.496 50.000 0.00 0.00 43.33 2.59
797 817 1.814394 TGCAAGACACATTCATGCCTC 59.186 47.619 0.00 0.00 46.46 4.70
798 818 2.089980 GCAAGACACATTCATGCCTCT 58.910 47.619 0.00 0.00 42.13 3.69
799 819 3.273434 GCAAGACACATTCATGCCTCTA 58.727 45.455 0.00 0.00 42.13 2.43
800 820 3.881688 GCAAGACACATTCATGCCTCTAT 59.118 43.478 0.00 0.00 42.13 1.98
819 839 8.507249 GCCTCTATATTTTGGCTTAACACATAG 58.493 37.037 0.00 0.00 41.92 2.23
829 849 9.953565 TTTGGCTTAACACATAGATTTACTAGT 57.046 29.630 0.00 0.00 34.35 2.57
830 850 9.953565 TTGGCTTAACACATAGATTTACTAGTT 57.046 29.630 0.00 0.00 34.35 2.24
831 851 9.378551 TGGCTTAACACATAGATTTACTAGTTG 57.621 33.333 0.00 0.00 34.35 3.16
832 852 8.336080 GGCTTAACACATAGATTTACTAGTTGC 58.664 37.037 0.00 0.00 34.35 4.17
833 853 9.099454 GCTTAACACATAGATTTACTAGTTGCT 57.901 33.333 0.00 0.00 34.35 3.91
836 856 8.630278 AACACATAGATTTACTAGTTGCTACG 57.370 34.615 0.00 0.00 34.35 3.51
933 953 1.164041 ACCCAAAGAGCGACCAAACG 61.164 55.000 0.00 0.00 0.00 3.60
955 975 2.091102 AAAGCGAACGACTTCCCGGA 62.091 55.000 0.73 0.00 0.00 5.14
1445 1481 5.984583 AGCCATGGATGGATTAAGCTCACT 61.985 45.833 18.40 0.00 45.90 3.41
1446 1482 7.956991 AGCCATGGATGGATTAAGCTCACTG 62.957 48.000 18.40 0.00 45.90 3.66
1447 1483 2.923121 TGGATGGATTAAGCTCACTGC 58.077 47.619 0.00 0.00 43.29 4.40
1457 1493 2.764944 GCTCACTGCTCACCAGATG 58.235 57.895 0.00 0.00 44.64 2.90
1458 1494 1.367599 GCTCACTGCTCACCAGATGC 61.368 60.000 0.00 0.00 44.64 3.91
1459 1495 0.249676 CTCACTGCTCACCAGATGCT 59.750 55.000 0.00 0.00 44.64 3.79
1478 1514 3.832490 TGCTACTCTTAACTCTGAAGCCA 59.168 43.478 0.00 0.00 0.00 4.75
1526 1585 3.469008 TGCCGTCTTGGTCATATAAGG 57.531 47.619 0.00 0.00 41.21 2.69
1529 1588 3.744530 GCCGTCTTGGTCATATAAGGCTT 60.745 47.826 4.58 4.58 41.21 4.35
1555 1614 2.096417 GCAGTGTTGCGACGAAACTATT 60.096 45.455 19.21 2.71 41.13 1.73
1577 1636 1.945387 GCTTGCTAGCTACTGATGCA 58.055 50.000 17.23 0.76 44.27 3.96
1617 1676 5.966319 AGAAGAATCTGGGGGCATAATTTTT 59.034 36.000 0.00 0.00 33.59 1.94
1622 1681 6.670695 ATCTGGGGGCATAATTTTTGATAC 57.329 37.500 0.00 0.00 0.00 2.24
1645 1704 4.667668 CGCTGTATTCAAAGTTCAGACTGC 60.668 45.833 0.00 0.00 35.91 4.40
1694 1756 2.166254 GGACATTTGGCCATTGTAGGTG 59.834 50.000 18.86 8.00 44.76 4.00
1697 1759 1.917872 TTTGGCCATTGTAGGTGGTC 58.082 50.000 6.09 0.00 41.73 4.02
1714 1776 2.819608 TGGTCAAGTGCATAGCCTTTTC 59.180 45.455 0.00 0.00 0.00 2.29
1728 1790 1.796459 CCTTTTCGACTGGGTGTTACG 59.204 52.381 0.00 0.00 0.00 3.18
1796 1858 4.699257 AGCACTGTTTTCTCATCCTCATTC 59.301 41.667 0.00 0.00 0.00 2.67
1809 1871 4.695217 TCCTCATTCGCAAAATGTAACC 57.305 40.909 8.26 0.00 0.00 2.85
1824 1886 6.560253 AATGTAACCTGAACATGAAGTGAC 57.440 37.500 0.00 0.00 37.62 3.67
1837 1899 3.544684 TGAAGTGACTGTTGACTTGCAT 58.455 40.909 9.96 0.00 32.47 3.96
1838 1900 3.947196 TGAAGTGACTGTTGACTTGCATT 59.053 39.130 9.96 0.00 32.47 3.56
1839 1901 4.398988 TGAAGTGACTGTTGACTTGCATTT 59.601 37.500 9.96 0.00 32.47 2.32
1882 1949 1.534729 GTGCTAAGGTGGAAGGGTTG 58.465 55.000 0.00 0.00 0.00 3.77
1885 1952 0.404040 CTAAGGTGGAAGGGTTGGCA 59.596 55.000 0.00 0.00 0.00 4.92
1886 1953 0.111639 TAAGGTGGAAGGGTTGGCAC 59.888 55.000 0.00 0.00 0.00 5.01
1914 1981 2.156917 CTGGTGTCACACTGCATCATT 58.843 47.619 8.12 0.00 34.40 2.57
1917 1984 3.384146 TGGTGTCACACTGCATCATTTTT 59.616 39.130 8.12 0.00 34.40 1.94
1919 1986 5.068329 TGGTGTCACACTGCATCATTTTTAA 59.932 36.000 8.12 0.00 34.40 1.52
1921 1988 7.040132 TGGTGTCACACTGCATCATTTTTAATA 60.040 33.333 8.12 0.00 34.40 0.98
1943 2010 7.809880 ATAGAGTATTGGGGGAACTAATACC 57.190 40.000 9.14 0.00 39.22 2.73
1944 2011 4.591924 AGAGTATTGGGGGAACTAATACCG 59.408 45.833 9.14 0.00 39.22 4.02
1947 2014 1.113788 TGGGGGAACTAATACCGTCG 58.886 55.000 0.00 0.00 0.00 5.12
1963 2030 1.536922 CGTCGCAGATGGATGCTAAGT 60.537 52.381 0.00 0.00 44.24 2.24
1965 2032 2.939103 GTCGCAGATGGATGCTAAGTTT 59.061 45.455 0.00 0.00 44.24 2.66
1977 2044 4.864704 TGCTAAGTTTGTGGAAATTCCC 57.135 40.909 9.87 1.65 35.03 3.97
2001 2068 1.611419 CCAGACATGGCAGGGTCAT 59.389 57.895 20.04 6.56 40.52 3.06
2004 2071 2.292267 CAGACATGGCAGGGTCATAAC 58.708 52.381 20.04 0.00 36.50 1.89
2053 2120 6.148976 GCTAGGGACTTACTTTGGTTTACTTG 59.851 42.308 0.00 0.00 41.75 3.16
2057 2124 6.060136 GGACTTACTTTGGTTTACTTGGTCT 58.940 40.000 0.00 0.00 0.00 3.85
2061 2128 5.959618 ACTTTGGTTTACTTGGTCTATGC 57.040 39.130 0.00 0.00 0.00 3.14
2085 2152 1.070445 GCTGGCATCTCAGAGCTACAT 59.930 52.381 0.00 0.00 36.93 2.29
2086 2153 2.867251 GCTGGCATCTCAGAGCTACATC 60.867 54.545 0.00 0.00 36.93 3.06
2104 2171 5.438761 ACATCTCCAACAGTTTTACTTGC 57.561 39.130 0.00 0.00 0.00 4.01
2105 2172 5.133221 ACATCTCCAACAGTTTTACTTGCT 58.867 37.500 0.00 0.00 0.00 3.91
2106 2173 5.594317 ACATCTCCAACAGTTTTACTTGCTT 59.406 36.000 0.00 0.00 0.00 3.91
2108 2175 6.613755 TCTCCAACAGTTTTACTTGCTTAC 57.386 37.500 0.00 0.00 0.00 2.34
2109 2176 6.116806 TCTCCAACAGTTTTACTTGCTTACA 58.883 36.000 0.00 0.00 0.00 2.41
2110 2177 6.600032 TCTCCAACAGTTTTACTTGCTTACAA 59.400 34.615 0.00 0.00 0.00 2.41
2174 2241 8.804688 AAAGATAATAGAGTTCAGTGCGATAC 57.195 34.615 0.00 0.00 0.00 2.24
2175 2242 6.915349 AGATAATAGAGTTCAGTGCGATACC 58.085 40.000 0.00 0.00 0.00 2.73
2361 2455 0.476771 TCCAAGAAGGCTTCCGGTTT 59.523 50.000 23.09 8.55 37.29 3.27
2367 2461 0.106918 AAGGCTTCCGGTTTGACACA 60.107 50.000 0.00 0.00 0.00 3.72
2372 2466 1.597663 CTTCCGGTTTGACACACAGAC 59.402 52.381 0.00 0.00 33.58 3.51
2466 2560 1.589716 GAACGCCATCCAAAGCTGCT 61.590 55.000 0.00 0.00 0.00 4.24
2478 2608 3.123620 GCTGCTCCTTCTGGCACG 61.124 66.667 0.00 0.00 34.57 5.34
2481 2611 4.704833 GCTCCTTCTGGCACGCCA 62.705 66.667 10.95 10.95 45.02 5.69
2516 2646 1.268283 GCTACTCCTTCTGGCACCCT 61.268 60.000 0.00 0.00 0.00 4.34
2625 2755 2.029964 TCAGGAACCGGTTCGCAC 59.970 61.111 34.70 23.67 40.37 5.34
2702 2832 6.251255 TGATATCATTGATGGTCCAAGTGA 57.749 37.500 9.46 0.00 0.00 3.41
2767 2897 2.101249 CAGGCTTCTGGCACTTCAAAAA 59.899 45.455 0.00 0.00 44.01 1.94
2826 2956 3.440522 GCAAATCTGAGGGTAGTTTCACC 59.559 47.826 0.00 0.00 37.91 4.02
2965 3098 6.208204 CCATCTTCCTTTGTTCTCACTTGATT 59.792 38.462 0.00 0.00 0.00 2.57
3077 3210 1.737838 TCCAAGTCATCGTTGGATGC 58.262 50.000 0.29 0.00 46.96 3.91
3085 3218 1.369091 ATCGTTGGATGCCGCTTCAC 61.369 55.000 8.40 0.00 0.00 3.18
3093 3226 2.096013 GGATGCCGCTTCACTAGAAAAC 59.904 50.000 8.40 0.00 32.35 2.43
3382 3515 4.377021 TGGGATCGATAATTCCGAAAGTG 58.623 43.478 0.00 0.00 35.45 3.16
3383 3516 3.186613 GGGATCGATAATTCCGAAAGTGC 59.813 47.826 0.00 0.00 39.62 4.40
3403 3536 2.094286 GCGAGGGGATCATCTACTCATG 60.094 54.545 9.01 0.00 0.00 3.07
3675 3808 6.127814 CCAAGAAGCTAGAAGATGAATGCAAA 60.128 38.462 0.00 0.00 0.00 3.68
3681 3814 8.284945 AGCTAGAAGATGAATGCAAAACAATA 57.715 30.769 0.00 0.00 0.00 1.90
3783 3916 3.317603 TCATCAGATGCTGTCGAACAA 57.682 42.857 5.41 0.00 32.61 2.83
3831 3964 3.589654 ATGTGCCTGTGGACGGTCG 62.590 63.158 1.43 0.00 0.00 4.79
3903 4036 5.947228 TTAACTGCTTCTCCAATTGTGAG 57.053 39.130 14.40 14.40 0.00 3.51
4188 4321 7.276878 GCTGTTTCTAGAGAAGTAAAGTCCATC 59.723 40.741 0.00 0.00 35.21 3.51
4199 4332 3.733443 AAAGTCCATCACAAACCAAGC 57.267 42.857 0.00 0.00 0.00 4.01
4221 4354 2.938451 CGCACCAGAAATTAGATCTGCA 59.062 45.455 5.18 0.00 42.36 4.41
4402 4535 0.954452 GAGACCACCAAAACCTGCTG 59.046 55.000 0.00 0.00 0.00 4.41
4407 4540 3.683937 CCAAAACCTGCTGGCCGG 61.684 66.667 7.41 7.41 36.63 6.13
4430 4563 2.568935 GATGAACGGCAAGTGAGCGC 62.569 60.000 0.00 0.00 34.64 5.92
4561 4694 0.106894 GCCCTTTCTACAGATCGGGG 59.893 60.000 12.66 9.88 35.59 5.73
4608 4741 4.095632 GGAAATGAGACTAAAGAAGCTGCC 59.904 45.833 0.00 0.00 0.00 4.85
4751 4884 7.275888 ACAATGAATCAGAAAGTAAGCACAA 57.724 32.000 0.00 0.00 0.00 3.33
5052 5185 2.232941 CCCACATTGCAAAAGCTCAGAT 59.767 45.455 1.71 0.00 0.00 2.90
5078 5211 2.582636 AGGGGCATCAAGATGTAAAGGT 59.417 45.455 11.35 0.00 40.80 3.50
5157 5291 8.115490 AGCTACAGTTCTTTTATCAGCATTTT 57.885 30.769 0.00 0.00 0.00 1.82
5359 5497 0.532862 ACTCGTGCAGTTTGAGGTGG 60.533 55.000 9.26 0.00 34.03 4.61
5386 5741 9.935682 GTACAATCAATCAACAATACCTATGTG 57.064 33.333 0.00 0.00 0.00 3.21
5407 5762 6.902341 TGTGATCTTCTAAACACTTCAATGC 58.098 36.000 0.00 0.00 34.81 3.56
5411 5766 6.545504 TCTTCTAAACACTTCAATGCTGAC 57.454 37.500 0.00 0.00 0.00 3.51
5417 5772 4.247267 ACACTTCAATGCTGACCAAATG 57.753 40.909 0.00 0.00 0.00 2.32
5430 5786 8.347004 TGCTGACCAAATGAATTAGTAAATCA 57.653 30.769 3.16 3.16 0.00 2.57
5465 5821 3.551485 TCATGTGAACTCGTGCATTATCG 59.449 43.478 0.00 0.00 0.00 2.92
5563 5919 3.997021 GTGATCAACAAGGATCGTTCAGT 59.003 43.478 0.00 0.00 45.31 3.41
5632 5988 1.784856 CTTCCATTCGTATACGGTGCG 59.215 52.381 24.18 15.72 40.29 5.34
5644 6000 2.990479 GGTGCGGAGACAAGGGAT 59.010 61.111 0.00 0.00 0.00 3.85
5782 6138 2.751436 CCGTGATGCACTTGGGGG 60.751 66.667 0.00 0.00 31.34 5.40
5783 6139 2.350895 CGTGATGCACTTGGGGGA 59.649 61.111 0.00 0.00 31.34 4.81
5784 6140 1.746615 CGTGATGCACTTGGGGGAG 60.747 63.158 0.00 0.00 31.34 4.30
5806 6162 5.552178 AGTCTAAGGTTTTGATGAGTGGTC 58.448 41.667 0.00 0.00 0.00 4.02
5863 6224 0.895559 GCAGCCAGCAGGTAACCTTT 60.896 55.000 0.00 0.00 44.79 3.11
5892 6255 6.543831 ACAGTAGTTTTGCACTCTCTTCATTT 59.456 34.615 0.00 0.00 36.88 2.32
5896 6259 5.824624 AGTTTTGCACTCTCTTCATTTCTCA 59.175 36.000 0.00 0.00 0.00 3.27
5898 6261 5.679734 TTGCACTCTCTTCATTTCTCAAC 57.320 39.130 0.00 0.00 0.00 3.18
5900 6263 5.311265 TGCACTCTCTTCATTTCTCAACAT 58.689 37.500 0.00 0.00 0.00 2.71
5913 6276 3.245797 TCTCAACATCGCTCTCTTTTCG 58.754 45.455 0.00 0.00 0.00 3.46
5914 6277 2.989840 CTCAACATCGCTCTCTTTTCGT 59.010 45.455 0.00 0.00 0.00 3.85
5919 6282 3.119316 ACATCGCTCTCTTTTCGTGAGAT 60.119 43.478 0.00 0.00 39.49 2.75
5959 6322 9.778741 TCTGTTTCTTATTCTTCAGTATGTGTT 57.221 29.630 0.00 0.00 37.40 3.32
5960 6323 9.817365 CTGTTTCTTATTCTTCAGTATGTGTTG 57.183 33.333 0.00 0.00 37.40 3.33
5964 6327 1.067693 TCTTCAGTATGTGTTGCGCG 58.932 50.000 0.00 0.00 37.40 6.86
5975 6338 4.105733 TTGCGCGCTCAAGGCATG 62.106 61.111 33.29 0.00 41.91 4.06
5994 6400 4.330250 CATGATTCCTGTCAGAGGTGTTT 58.670 43.478 0.00 0.00 43.37 2.83
6000 6406 2.033801 CCTGTCAGAGGTGTTTTGCTTG 59.966 50.000 0.00 0.00 37.02 4.01
6023 6429 4.829492 GTGCTCCTGGGATTTATTTATGCT 59.171 41.667 0.00 0.00 0.00 3.79
6027 6433 3.057315 CCTGGGATTTATTTATGCTGCCG 60.057 47.826 0.00 0.00 0.00 5.69
6064 6470 4.806247 GCCACTAGTACAAGAATACTGCAG 59.194 45.833 13.48 13.48 36.09 4.41
6067 6473 6.127591 CCACTAGTACAAGAATACTGCAGAGT 60.128 42.308 23.35 5.31 36.09 3.24
6084 6490 4.582656 GCAGAGTCAGAGATACAGGTACAT 59.417 45.833 0.00 0.00 0.00 2.29
6088 6494 9.679661 CAGAGTCAGAGATACAGGTACATATAT 57.320 37.037 0.00 0.00 0.00 0.86
6090 6496 8.815565 AGTCAGAGATACAGGTACATATATGG 57.184 38.462 16.96 1.38 0.00 2.74
6096 6502 4.277515 ACAGGTACATATATGGCTGCAG 57.722 45.455 16.96 10.11 0.00 4.41
6116 6522 4.164294 CAGCTCTGCATTTTTACTCTTGC 58.836 43.478 0.00 0.00 35.67 4.01
6121 6527 4.580167 TCTGCATTTTTACTCTTGCTGTGT 59.420 37.500 0.00 0.00 36.04 3.72
6127 6533 6.449635 TTTTTACTCTTGCTGTGTCATTGT 57.550 33.333 0.00 0.00 0.00 2.71
6133 6539 2.565046 TGCTGTGTCATTGTGATGGA 57.435 45.000 0.00 0.00 33.93 3.41
6149 6598 3.325716 TGATGGATCATCATCGGTGACAT 59.674 43.478 0.00 0.00 44.60 3.06
6159 6608 2.357327 TCGGTGACATCGTTTGGTAG 57.643 50.000 8.18 0.00 0.00 3.18
6172 6621 4.448395 TCGTTTGGTAGTGTTTAACCGATG 59.552 41.667 0.00 0.00 38.70 3.84
6176 6625 4.716794 TGGTAGTGTTTAACCGATGGTTT 58.283 39.130 6.53 0.00 44.33 3.27
6183 6633 6.717997 AGTGTTTAACCGATGGTTTTAGGATT 59.282 34.615 6.53 0.00 44.33 3.01
6184 6634 7.231925 AGTGTTTAACCGATGGTTTTAGGATTT 59.768 33.333 6.53 0.00 44.33 2.17
6191 6641 6.183360 ACCGATGGTTTTAGGATTTGTTTTGT 60.183 34.615 0.00 0.00 27.29 2.83
6204 6654 6.239458 GGATTTGTTTTGTTTAGATCCACCCA 60.239 38.462 0.00 0.00 33.48 4.51
6205 6655 5.523438 TTGTTTTGTTTAGATCCACCCAC 57.477 39.130 0.00 0.00 0.00 4.61
6221 6676 0.883833 CCACCACAGATGAGCCAAAC 59.116 55.000 0.00 0.00 0.00 2.93
6227 6682 2.044946 GATGAGCCAAACCCCGCT 60.045 61.111 0.00 0.00 38.27 5.52
6228 6683 2.361610 ATGAGCCAAACCCCGCTG 60.362 61.111 0.00 0.00 34.84 5.18
6229 6684 3.210012 ATGAGCCAAACCCCGCTGT 62.210 57.895 0.00 0.00 34.84 4.40
6239 6694 2.746277 CCCGCTGTGGCCTGTTAC 60.746 66.667 3.32 0.00 35.87 2.50
6251 6706 1.302511 CTGTTACAACCCTGGCGCT 60.303 57.895 7.64 0.00 0.00 5.92
6265 6720 0.657368 GGCGCTGAAACTCGTGTTTG 60.657 55.000 19.38 7.98 45.36 2.93
6271 6726 3.426963 GCTGAAACTCGTGTTTGGTGAAA 60.427 43.478 19.38 0.00 45.36 2.69
6276 6731 5.668558 AACTCGTGTTTGGTGAAATACTC 57.331 39.130 0.00 0.00 32.49 2.59
6277 6732 4.957296 ACTCGTGTTTGGTGAAATACTCT 58.043 39.130 0.00 0.00 32.49 3.24
6279 6734 6.518493 ACTCGTGTTTGGTGAAATACTCTTA 58.482 36.000 0.00 0.00 32.49 2.10
6280 6735 6.987992 ACTCGTGTTTGGTGAAATACTCTTAA 59.012 34.615 0.00 0.00 32.49 1.85
6283 6738 6.204108 CGTGTTTGGTGAAATACTCTTAACCT 59.796 38.462 0.00 0.00 32.49 3.50
6285 6740 7.860872 GTGTTTGGTGAAATACTCTTAACCTTG 59.139 37.037 0.00 0.00 32.08 3.61
6286 6741 7.558444 TGTTTGGTGAAATACTCTTAACCTTGT 59.442 33.333 0.00 0.00 0.00 3.16
6287 6742 9.059260 GTTTGGTGAAATACTCTTAACCTTGTA 57.941 33.333 0.00 0.00 0.00 2.41
6288 6743 9.802039 TTTGGTGAAATACTCTTAACCTTGTAT 57.198 29.630 0.00 0.00 0.00 2.29
6317 6772 3.592059 TGTATAAAGCGAGAAAAGGCGT 58.408 40.909 0.00 0.00 0.00 5.68
6324 6779 2.048503 AGAAAAGGCGTCCGGTCG 60.049 61.111 17.02 17.02 0.00 4.79
6353 6813 3.207265 TGTGTTGCACAGAATAGTGGT 57.793 42.857 0.00 0.00 39.62 4.16
6356 6816 3.315191 GTGTTGCACAGAATAGTGGTGTT 59.685 43.478 0.00 0.00 39.87 3.32
6358 6818 4.202000 TGTTGCACAGAATAGTGGTGTTTG 60.202 41.667 0.00 0.00 39.87 2.93
6362 6822 4.556699 GCACAGAATAGTGGTGTTTGGAAC 60.557 45.833 0.00 0.00 39.87 3.62
6363 6823 4.578516 CACAGAATAGTGGTGTTTGGAACA 59.421 41.667 0.00 0.00 36.04 3.18
6366 6826 8.154889 CACAGAATAGTGGTGTTTGGAACAAAG 61.155 40.741 0.00 0.00 44.16 2.77
6383 6845 2.755103 CAAAGTATTGCCCCTCCAACTC 59.245 50.000 0.00 0.00 0.00 3.01
6391 6853 1.707427 GCCCCTCCAACTCCATATGAT 59.293 52.381 3.65 0.00 0.00 2.45
6397 6859 2.158623 TCCAACTCCATATGATGCCCAC 60.159 50.000 3.65 0.00 0.00 4.61
6414 6876 3.870299 GCCCACGAATCCTTTCTTTCTCT 60.870 47.826 0.00 0.00 0.00 3.10
6420 6882 6.148480 CACGAATCCTTTCTTTCTCTCATGTT 59.852 38.462 0.00 0.00 0.00 2.71
6432 6894 6.925610 TTCTCTCATGTTTGCCATACATAC 57.074 37.500 0.31 0.00 34.59 2.39
6433 6895 5.988287 TCTCTCATGTTTGCCATACATACA 58.012 37.500 0.31 0.00 43.15 2.29
6438 6900 5.772825 ATGTTTGCCATACATACATGGTC 57.227 39.130 0.00 0.00 45.62 4.02
6439 6901 3.625313 TGTTTGCCATACATACATGGTCG 59.375 43.478 0.00 0.00 46.21 4.79
6440 6902 3.552132 TTGCCATACATACATGGTCGT 57.448 42.857 0.00 0.00 46.21 4.34
6442 6904 4.674281 TGCCATACATACATGGTCGTTA 57.326 40.909 0.00 0.00 46.21 3.18
6443 6905 4.627058 TGCCATACATACATGGTCGTTAG 58.373 43.478 0.00 0.00 46.21 2.34
6444 6906 4.100344 TGCCATACATACATGGTCGTTAGT 59.900 41.667 0.00 0.00 46.21 2.24
6446 6908 6.183360 TGCCATACATACATGGTCGTTAGTTA 60.183 38.462 0.00 0.00 46.21 2.24
6449 7047 9.268268 CCATACATACATGGTCGTTAGTTAATT 57.732 33.333 0.00 0.00 40.62 1.40
6453 7051 9.391006 ACATACATGGTCGTTAGTTAATTCATT 57.609 29.630 0.00 0.00 0.00 2.57
6457 7055 9.607988 ACATGGTCGTTAGTTAATTCATTCATA 57.392 29.630 0.00 0.00 0.00 2.15
6488 7098 5.159209 GCATGGTTGAGACAAATCTTTGAG 58.841 41.667 9.53 0.00 40.55 3.02
6491 7101 7.428020 CATGGTTGAGACAAATCTTTGAGAAA 58.572 34.615 9.53 0.00 40.55 2.52
6515 7128 1.068895 CCCTGAACACTTTGCATTGCA 59.931 47.619 7.38 7.38 36.47 4.08
6528 7141 1.365699 CATTGCATGCAGCCTTTTCC 58.634 50.000 21.50 0.00 44.83 3.13
6529 7142 0.251073 ATTGCATGCAGCCTTTTCCC 59.749 50.000 21.50 0.00 44.83 3.97
6530 7143 1.829523 TTGCATGCAGCCTTTTCCCC 61.830 55.000 21.50 0.00 44.83 4.81
6532 7145 2.362889 ATGCAGCCTTTTCCCCGG 60.363 61.111 0.00 0.00 0.00 5.73
6533 7146 2.917897 ATGCAGCCTTTTCCCCGGA 61.918 57.895 0.73 0.00 0.00 5.14
6534 7147 2.751837 GCAGCCTTTTCCCCGGAG 60.752 66.667 0.73 0.00 0.00 4.63
6535 7148 3.077907 CAGCCTTTTCCCCGGAGA 58.922 61.111 0.73 0.00 0.00 3.71
6561 7174 3.760035 GGAAGCTCGAGGTCGCCA 61.760 66.667 23.71 0.00 39.60 5.69
6562 7175 2.496817 GAAGCTCGAGGTCGCCAT 59.503 61.111 18.90 0.70 39.60 4.40
6563 7176 1.880340 GAAGCTCGAGGTCGCCATG 60.880 63.158 18.90 0.00 39.60 3.66
6564 7177 4.521062 AGCTCGAGGTCGCCATGC 62.521 66.667 12.24 0.00 39.60 4.06
6566 7179 4.899239 CTCGAGGTCGCCATGCCC 62.899 72.222 3.91 0.00 39.60 5.36
6585 7198 4.593864 GCCCGCCGCTCCTTCTAG 62.594 72.222 0.00 0.00 0.00 2.43
6586 7199 3.917760 CCCGCCGCTCCTTCTAGG 61.918 72.222 0.00 0.00 36.46 3.02
6587 7200 2.833582 CCGCCGCTCCTTCTAGGA 60.834 66.667 0.00 0.00 43.43 2.94
6589 7202 2.413765 GCCGCTCCTTCTAGGACG 59.586 66.667 9.33 9.33 40.06 4.79
6620 7243 1.421485 GCACCGCAGAATGTCGAAG 59.579 57.895 0.00 0.00 37.72 3.79
6627 7250 1.733912 GCAGAATGTCGAAGCACATGA 59.266 47.619 0.00 0.00 37.07 3.07
6630 7253 3.681417 CAGAATGTCGAAGCACATGAAGA 59.319 43.478 0.00 0.00 37.07 2.87
6631 7254 3.681897 AGAATGTCGAAGCACATGAAGAC 59.318 43.478 0.00 0.20 37.07 3.01
6632 7255 1.795768 TGTCGAAGCACATGAAGACC 58.204 50.000 0.00 0.00 0.00 3.85
6633 7256 1.079503 GTCGAAGCACATGAAGACCC 58.920 55.000 0.00 0.00 0.00 4.46
6634 7257 0.389817 TCGAAGCACATGAAGACCCG 60.390 55.000 0.00 0.00 0.00 5.28
6635 7258 1.796796 GAAGCACATGAAGACCCGC 59.203 57.895 0.00 0.00 0.00 6.13
6636 7259 1.648467 GAAGCACATGAAGACCCGCC 61.648 60.000 0.00 0.00 0.00 6.13
6637 7260 3.134127 GCACATGAAGACCCGCCC 61.134 66.667 0.00 0.00 0.00 6.13
6638 7261 2.671070 CACATGAAGACCCGCCCT 59.329 61.111 0.00 0.00 0.00 5.19
6639 7262 1.450312 CACATGAAGACCCGCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
6640 7263 2.202932 CATGAAGACCCGCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
6652 7275 4.016706 CCCTCGGGTTGCCGAAGT 62.017 66.667 0.00 0.00 41.77 3.01
6653 7276 2.032071 CCTCGGGTTGCCGAAGTT 59.968 61.111 0.00 0.00 41.77 2.66
6654 7277 2.033194 CCTCGGGTTGCCGAAGTTC 61.033 63.158 0.00 0.00 41.77 3.01
6655 7278 1.301401 CTCGGGTTGCCGAAGTTCA 60.301 57.895 3.32 0.00 41.77 3.18
6665 7288 1.336755 GCCGAAGTTCAAAAGGCAGAA 59.663 47.619 12.94 0.00 46.48 3.02
6676 7299 2.032681 GGCAGAAAGTGGCGAGGT 59.967 61.111 0.00 0.00 42.77 3.85
6690 7328 2.034687 AGGTGGTCACATGCCTGC 59.965 61.111 3.40 0.00 0.00 4.85
6703 7341 2.107903 GCCTGCTCTGCTCTGCTTC 61.108 63.158 0.00 0.00 0.00 3.86
6704 7342 1.295746 CCTGCTCTGCTCTGCTTCA 59.704 57.895 0.00 0.00 0.00 3.02
6706 7344 1.004080 TGCTCTGCTCTGCTTCACC 60.004 57.895 0.00 0.00 0.00 4.02
6709 7347 1.440708 CTCTGCTCTGCTTCACCTTG 58.559 55.000 0.00 0.00 0.00 3.61
6710 7348 0.604780 TCTGCTCTGCTTCACCTTGC 60.605 55.000 0.00 0.00 0.00 4.01
6711 7349 1.584380 CTGCTCTGCTTCACCTTGCC 61.584 60.000 0.00 0.00 0.00 4.52
6712 7350 2.338785 GCTCTGCTTCACCTTGCCC 61.339 63.158 0.00 0.00 0.00 5.36
6713 7351 1.073722 CTCTGCTTCACCTTGCCCA 59.926 57.895 0.00 0.00 0.00 5.36
6716 7354 1.076412 TGCTTCACCTTGCCCAACA 60.076 52.632 0.00 0.00 0.00 3.33
6717 7355 0.685785 TGCTTCACCTTGCCCAACAA 60.686 50.000 0.00 0.00 36.62 2.83
6718 7356 0.249447 GCTTCACCTTGCCCAACAAC 60.249 55.000 0.00 0.00 33.68 3.32
6719 7357 0.030638 CTTCACCTTGCCCAACAACG 59.969 55.000 0.00 0.00 33.68 4.10
6720 7358 1.388065 TTCACCTTGCCCAACAACGG 61.388 55.000 0.00 0.00 33.68 4.44
6721 7359 2.124693 CACCTTGCCCAACAACGGT 61.125 57.895 0.00 0.00 39.13 4.83
6722 7360 1.380650 ACCTTGCCCAACAACGGTT 60.381 52.632 0.00 0.00 36.80 4.44
6738 7381 1.130749 CGGTTGGTTTTCACGTGAACA 59.869 47.619 29.74 21.41 33.13 3.18
6739 7382 2.521996 GGTTGGTTTTCACGTGAACAC 58.478 47.619 30.41 30.41 34.83 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.897259 TTCTCCTACAAATATTTTCGGACG 57.103 37.500 0.00 0.85 0.00 4.79
19 20 5.773575 TGCGTCTAGATACATCCATTTCTC 58.226 41.667 0.00 0.00 0.00 2.87
41 42 8.824159 AGATGGATGTATCGAGAACTAAAATG 57.176 34.615 0.00 0.00 32.33 2.32
53 54 8.783833 AGAAATGGATAAAGATGGATGTATCG 57.216 34.615 0.00 0.00 32.33 2.92
80 81 1.554042 CCGTCCGGAAACACTTGTCG 61.554 60.000 5.23 1.25 37.50 4.35
92 93 1.041447 ATTGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
212 222 1.066858 AGCTCAATGTAGGACGTGGTG 60.067 52.381 0.00 0.00 0.00 4.17
215 225 3.612860 GTGTAAGCTCAATGTAGGACGTG 59.387 47.826 0.00 0.00 0.00 4.49
242 252 2.472861 GACAATGCATCGGTCGACTATG 59.527 50.000 16.46 18.86 0.00 2.23
251 261 2.349275 GCAAAATTGGACAATGCATCGG 59.651 45.455 0.00 0.00 0.00 4.18
255 265 3.003482 GCAAAGCAAAATTGGACAATGCA 59.997 39.130 10.59 0.00 0.00 3.96
298 308 1.063642 TGGGATCAGAGACGAGATGGT 60.064 52.381 0.00 0.00 0.00 3.55
335 345 7.230747 TCTTTGAATTTGATGTTCTAGGGTGA 58.769 34.615 0.00 0.00 0.00 4.02
336 346 7.452880 TCTTTGAATTTGATGTTCTAGGGTG 57.547 36.000 0.00 0.00 0.00 4.61
338 348 9.933723 ATTTTCTTTGAATTTGATGTTCTAGGG 57.066 29.630 0.00 0.00 0.00 3.53
411 421 6.448369 TGGATCGGATGGGAGTAATAAAAT 57.552 37.500 0.00 0.00 0.00 1.82
412 422 5.897851 TGGATCGGATGGGAGTAATAAAA 57.102 39.130 0.00 0.00 0.00 1.52
413 423 5.897851 TTGGATCGGATGGGAGTAATAAA 57.102 39.130 0.00 0.00 0.00 1.40
414 424 5.368523 AGTTTGGATCGGATGGGAGTAATAA 59.631 40.000 0.00 0.00 0.00 1.40
415 425 4.905456 AGTTTGGATCGGATGGGAGTAATA 59.095 41.667 0.00 0.00 0.00 0.98
416 426 3.716872 AGTTTGGATCGGATGGGAGTAAT 59.283 43.478 0.00 0.00 0.00 1.89
417 427 3.112263 AGTTTGGATCGGATGGGAGTAA 58.888 45.455 0.00 0.00 0.00 2.24
499 509 5.238432 TGATGCGTGACTTGACATAAAAACT 59.762 36.000 0.00 0.00 0.00 2.66
607 618 4.680237 CTTCGCTGGACGTGGGCA 62.680 66.667 0.00 0.00 44.19 5.36
651 663 0.957395 TTCTACTCTTCGCCGGTCGT 60.957 55.000 16.00 1.84 39.67 4.34
655 667 1.336056 GCCTATTCTACTCTTCGCCGG 60.336 57.143 0.00 0.00 0.00 6.13
659 671 9.968870 AAAGTAATTAGCCTATTCTACTCTTCG 57.031 33.333 0.00 0.00 0.00 3.79
691 711 5.710984 ACGAACACACCAAACATTTTTACA 58.289 33.333 0.00 0.00 0.00 2.41
708 728 1.144969 GCGGATCACTGAAACGAACA 58.855 50.000 9.23 0.00 0.00 3.18
717 737 1.399440 CAACTCCAATGCGGATCACTG 59.601 52.381 0.00 0.00 45.19 3.66
736 756 2.770447 TGATGGTCTAGGGTTATGGCA 58.230 47.619 0.00 0.00 0.00 4.92
751 771 4.009675 TGTTCTTTCTCCGGATTTGATGG 58.990 43.478 3.57 0.00 0.00 3.51
824 844 9.426837 TGAACAAATAAATACGTAGCAACTAGT 57.573 29.630 0.08 0.00 0.00 2.57
825 845 9.685005 GTGAACAAATAAATACGTAGCAACTAG 57.315 33.333 0.08 0.00 0.00 2.57
827 847 8.090250 TGTGAACAAATAAATACGTAGCAACT 57.910 30.769 0.08 0.00 0.00 3.16
828 848 8.889849 ATGTGAACAAATAAATACGTAGCAAC 57.110 30.769 0.08 0.00 0.00 4.17
933 953 1.206831 GGAAGTCGTTCGCTTTGGC 59.793 57.895 4.22 0.00 32.92 4.52
949 969 1.002773 GAAGCCAAGTAGTTTCCGGGA 59.997 52.381 0.00 0.00 0.00 5.14
955 975 3.557264 CGAGGAAGGAAGCCAAGTAGTTT 60.557 47.826 0.00 0.00 0.00 2.66
1261 1285 2.890371 GTCGCGGTGGTACCTGAT 59.110 61.111 14.36 0.00 35.66 2.90
1445 1481 1.857965 AGAGTAGCATCTGGTGAGCA 58.142 50.000 0.00 0.00 0.00 4.26
1446 1482 2.977772 AAGAGTAGCATCTGGTGAGC 57.022 50.000 0.00 0.00 0.00 4.26
1447 1483 5.359576 AGAGTTAAGAGTAGCATCTGGTGAG 59.640 44.000 0.00 0.00 0.00 3.51
1448 1484 5.126222 CAGAGTTAAGAGTAGCATCTGGTGA 59.874 44.000 0.00 0.00 31.29 4.02
1449 1485 5.126222 TCAGAGTTAAGAGTAGCATCTGGTG 59.874 44.000 0.00 0.00 34.77 4.17
1450 1486 5.265191 TCAGAGTTAAGAGTAGCATCTGGT 58.735 41.667 0.00 0.00 34.77 4.00
1452 1488 5.748152 GCTTCAGAGTTAAGAGTAGCATCTG 59.252 44.000 0.00 0.00 35.21 2.90
1453 1489 5.163457 GGCTTCAGAGTTAAGAGTAGCATCT 60.163 44.000 0.00 0.00 0.00 2.90
1454 1490 5.047188 GGCTTCAGAGTTAAGAGTAGCATC 58.953 45.833 0.00 0.00 0.00 3.91
1455 1491 4.467795 TGGCTTCAGAGTTAAGAGTAGCAT 59.532 41.667 0.00 0.00 0.00 3.79
1456 1492 3.832490 TGGCTTCAGAGTTAAGAGTAGCA 59.168 43.478 0.00 0.00 0.00 3.49
1457 1493 4.457834 TGGCTTCAGAGTTAAGAGTAGC 57.542 45.455 0.00 0.00 0.00 3.58
1458 1494 6.214191 TGATGGCTTCAGAGTTAAGAGTAG 57.786 41.667 0.00 0.00 0.00 2.57
1478 1514 3.057033 GTCAGGCAAGCACAAAATCTGAT 60.057 43.478 0.00 0.00 33.28 2.90
1526 1585 4.522460 GCAACACTGCGAGAAAGC 57.478 55.556 0.00 0.00 39.20 3.51
1577 1636 6.484977 AGATTCTTCTCAAGTTTCGCTCTTTT 59.515 34.615 0.00 0.00 0.00 2.27
1617 1676 6.310467 GTCTGAACTTTGAATACAGCGTATCA 59.690 38.462 0.00 1.36 0.00 2.15
1622 1681 4.667668 GCAGTCTGAACTTTGAATACAGCG 60.668 45.833 3.32 0.00 31.71 5.18
1662 1721 2.101783 CCAAATGTCCAAGCAGGCATA 58.898 47.619 0.00 0.00 34.43 3.14
1663 1722 0.899720 CCAAATGTCCAAGCAGGCAT 59.100 50.000 0.00 0.00 36.22 4.40
1664 1723 1.818959 GCCAAATGTCCAAGCAGGCA 61.819 55.000 0.00 0.00 40.29 4.75
1667 1726 0.899720 ATGGCCAAATGTCCAAGCAG 59.100 50.000 10.96 0.00 35.75 4.24
1673 1735 2.166254 CACCTACAATGGCCAAATGTCC 59.834 50.000 25.71 0.00 0.00 4.02
1690 1752 0.035056 GGCTATGCACTTGACCACCT 60.035 55.000 0.00 0.00 0.00 4.00
1694 1756 2.159517 CGAAAAGGCTATGCACTTGACC 60.160 50.000 0.00 0.00 0.00 4.02
1697 1759 2.744202 AGTCGAAAAGGCTATGCACTTG 59.256 45.455 0.00 0.00 29.53 3.16
1698 1760 2.744202 CAGTCGAAAAGGCTATGCACTT 59.256 45.455 0.00 0.00 30.67 3.16
1714 1776 2.649331 AGAATCGTAACACCCAGTCG 57.351 50.000 0.00 0.00 0.00 4.18
1796 1858 4.793071 TCATGTTCAGGTTACATTTTGCG 58.207 39.130 0.00 0.00 34.11 4.85
1809 1871 4.813161 AGTCAACAGTCACTTCATGTTCAG 59.187 41.667 0.00 0.00 35.04 3.02
1839 1901 6.887002 ACCAAATTTCCAAAAGCAGGTAAAAA 59.113 30.769 0.00 0.00 0.00 1.94
1849 1915 5.466393 CACCTTAGCACCAAATTTCCAAAAG 59.534 40.000 0.00 0.00 0.00 2.27
1882 1949 1.004277 TGACACCAGGGAAATAGTGCC 59.996 52.381 0.00 0.00 38.24 5.01
1885 1952 2.979678 AGTGTGACACCAGGGAAATAGT 59.020 45.455 12.81 0.00 34.49 2.12
1886 1953 3.338249 CAGTGTGACACCAGGGAAATAG 58.662 50.000 12.81 0.00 34.49 1.73
1917 1984 9.330220 GGTATTAGTTCCCCCAATACTCTATTA 57.670 37.037 0.00 0.00 36.07 0.98
1919 1986 6.439692 CGGTATTAGTTCCCCCAATACTCTAT 59.560 42.308 0.00 0.00 36.07 1.98
1921 1988 4.591924 CGGTATTAGTTCCCCCAATACTCT 59.408 45.833 0.00 0.00 36.07 3.24
1935 2002 2.304092 TCCATCTGCGACGGTATTAGT 58.696 47.619 0.00 0.00 0.00 2.24
1938 2005 1.873903 GCATCCATCTGCGACGGTATT 60.874 52.381 0.00 0.00 31.49 1.89
1942 2009 0.249447 TTAGCATCCATCTGCGACGG 60.249 55.000 0.00 0.00 46.86 4.79
1943 2010 1.135046 CTTAGCATCCATCTGCGACG 58.865 55.000 0.00 0.00 46.86 5.12
1944 2011 2.231215 ACTTAGCATCCATCTGCGAC 57.769 50.000 0.00 0.00 46.86 5.19
1947 2014 3.181493 CCACAAACTTAGCATCCATCTGC 60.181 47.826 0.00 0.00 42.62 4.26
1954 2021 5.410924 GGGAATTTCCACAAACTTAGCATC 58.589 41.667 17.08 0.00 38.64 3.91
1963 2030 1.470890 GATCGCGGGAATTTCCACAAA 59.529 47.619 17.08 0.58 38.64 2.83
1965 2032 0.746563 GGATCGCGGGAATTTCCACA 60.747 55.000 17.08 0.00 38.64 4.17
1977 2044 2.202919 TGCCATGTCTGGATCGCG 60.203 61.111 0.00 0.00 46.37 5.87
2053 2120 1.524002 TGCCAGCTCTGCATAGACC 59.476 57.895 2.78 0.00 32.85 3.85
2061 2128 0.531090 GCTCTGAGATGCCAGCTCTG 60.531 60.000 11.74 10.94 34.28 3.35
2075 2142 3.883830 ACTGTTGGAGATGTAGCTCTG 57.116 47.619 0.00 0.00 35.26 3.35
2085 2152 6.116806 TGTAAGCAAGTAAAACTGTTGGAGA 58.883 36.000 0.00 0.00 0.00 3.71
2086 2153 6.371809 TGTAAGCAAGTAAAACTGTTGGAG 57.628 37.500 0.00 0.00 0.00 3.86
2104 2171 8.213518 AGATGCCATTACATGTAAGTTGTAAG 57.786 34.615 22.03 6.93 41.44 2.34
2105 2172 9.674068 TTAGATGCCATTACATGTAAGTTGTAA 57.326 29.630 22.03 11.11 42.11 2.41
2106 2173 9.325198 CTTAGATGCCATTACATGTAAGTTGTA 57.675 33.333 22.03 12.95 43.62 2.41
2108 2175 8.437360 TCTTAGATGCCATTACATGTAAGTTG 57.563 34.615 22.03 16.11 46.35 3.16
2109 2176 9.632638 AATCTTAGATGCCATTACATGTAAGTT 57.367 29.630 22.03 5.24 46.35 2.66
2110 2177 9.632638 AAATCTTAGATGCCATTACATGTAAGT 57.367 29.630 22.03 9.06 46.35 2.24
2161 2228 0.824759 AGGGAGGTATCGCACTGAAC 59.175 55.000 0.00 0.00 40.75 3.18
2322 2416 9.639563 TCTTGGAGAAATATTATTACATGGCAA 57.360 29.630 0.00 0.00 0.00 4.52
2361 2455 2.766263 ACTCTTCAAGGTCTGTGTGTCA 59.234 45.455 0.00 0.00 0.00 3.58
2367 2461 4.103311 AGCCTAAAACTCTTCAAGGTCTGT 59.897 41.667 0.00 0.00 0.00 3.41
2372 2466 3.190118 CAGCAGCCTAAAACTCTTCAAGG 59.810 47.826 0.00 0.00 0.00 3.61
2430 2524 1.135170 GTTCCCGGTGCTACTAGTGAC 60.135 57.143 5.39 0.00 0.00 3.67
2451 2545 0.969409 AAGGAGCAGCTTTGGATGGC 60.969 55.000 0.00 0.00 0.00 4.40
2502 2632 1.152030 AGTCAGGGTGCCAGAAGGA 60.152 57.895 0.00 0.00 36.89 3.36
2625 2755 2.949106 CCTGGCAACACAGAAGCG 59.051 61.111 0.00 0.00 46.17 4.68
2702 2832 5.163385 CCCATATCATCCAAACTTGTTGCAT 60.163 40.000 0.00 0.00 0.00 3.96
2767 2897 2.616510 GCATTACCACTGAGCCAGAACT 60.617 50.000 8.91 0.00 35.18 3.01
2826 2956 3.366070 CCAGAGACAAATGCAGCTTCTTG 60.366 47.826 0.00 0.00 0.00 3.02
2965 3098 1.067295 AGGGCAACAACTCTGGATGA 58.933 50.000 0.00 0.00 39.74 2.92
3077 3210 3.607078 GCAGTTGTTTTCTAGTGAAGCGG 60.607 47.826 0.00 0.00 33.28 5.52
3085 3218 4.022935 TGCAGATTGGCAGTTGTTTTCTAG 60.023 41.667 0.00 0.00 39.25 2.43
3093 3226 1.068895 TGGTTTGCAGATTGGCAGTTG 59.931 47.619 0.00 0.00 45.88 3.16
3334 3467 7.568349 TCTTTTGCACTAATCAGTCCAGATAT 58.432 34.615 0.00 0.00 30.46 1.63
3382 3515 1.621992 TGAGTAGATGATCCCCTCGC 58.378 55.000 5.00 0.00 0.00 5.03
3383 3516 2.094286 GCATGAGTAGATGATCCCCTCG 60.094 54.545 0.00 0.00 0.00 4.63
3403 3536 5.652744 TCGTTCTTCAAACTAGAACTTGC 57.347 39.130 12.32 0.00 45.87 4.01
3675 3808 3.635591 CCTTCCAGCTTCCCATATTGTT 58.364 45.455 0.00 0.00 0.00 2.83
3681 3814 1.305623 CTGCCTTCCAGCTTCCCAT 59.694 57.895 0.00 0.00 34.21 4.00
3747 3880 8.242053 GCATCTGATGAAGATAATTTACCATGG 58.758 37.037 21.30 11.19 44.24 3.66
3783 3916 4.771054 AGGAAGACGTAACCACTAGAATGT 59.229 41.667 0.00 0.00 0.00 2.71
3831 3964 1.667467 GGATCATCTCTAAGGCGACGC 60.667 57.143 12.43 12.43 0.00 5.19
3903 4036 2.434702 CACAAGGGTGGGTAGTAGATCC 59.565 54.545 0.00 0.00 41.45 3.36
4188 4321 2.027460 GGTGCGGCTTGGTTTGTG 59.973 61.111 0.00 0.00 0.00 3.33
4199 4332 2.289002 GCAGATCTAATTTCTGGTGCGG 59.711 50.000 7.55 0.00 40.77 5.69
4221 4354 5.988287 TGTTTTCTGGGATTTTCAAGCTTT 58.012 33.333 0.00 0.00 0.00 3.51
4402 4535 3.497879 CCGTTCATCTTTCCGGCC 58.502 61.111 0.00 0.00 33.20 6.13
4407 4540 2.413371 GCTCACTTGCCGTTCATCTTTC 60.413 50.000 0.00 0.00 0.00 2.62
4430 4563 1.009829 GCCATTAGTCTGTTCCGCTG 58.990 55.000 0.00 0.00 0.00 5.18
4751 4884 1.799933 TGGGGGCAACTTTTGTGAAT 58.200 45.000 0.00 0.00 0.00 2.57
4811 4944 1.318576 CCTATTGGATTTCCGCCCAC 58.681 55.000 0.00 0.00 39.43 4.61
5043 5176 1.931007 GCCCCTTCCCATCTGAGCTT 61.931 60.000 0.00 0.00 0.00 3.74
5052 5185 0.259647 CATCTTGATGCCCCTTCCCA 59.740 55.000 0.00 0.00 0.00 4.37
5078 5211 0.679321 TTGTGACACAGCACCAGCAA 60.679 50.000 8.55 0.00 45.49 3.91
5159 5293 9.645128 ATCTATGTTCCCAATGTAAATCATCAA 57.355 29.630 0.00 0.00 35.48 2.57
5160 5294 9.645128 AATCTATGTTCCCAATGTAAATCATCA 57.355 29.630 0.00 0.00 35.48 3.07
5161 5295 9.903682 CAATCTATGTTCCCAATGTAAATCATC 57.096 33.333 0.00 0.00 35.48 2.92
5258 5394 7.397221 TCAGTGGAATGACATAAAGATCAGTT 58.603 34.615 0.00 0.00 0.00 3.16
5359 5497 9.120538 ACATAGGTATTGTTGATTGATTGTACC 57.879 33.333 0.00 0.00 0.00 3.34
5386 5741 7.239972 GTCAGCATTGAAGTGTTTAGAAGATC 58.760 38.462 0.00 0.00 34.49 2.75
5394 5749 4.734398 TTTGGTCAGCATTGAAGTGTTT 57.266 36.364 0.00 0.00 34.49 2.83
5402 5757 8.984891 TTTACTAATTCATTTGGTCAGCATTG 57.015 30.769 0.00 0.00 30.77 2.82
5430 5786 8.851145 ACGAGTTCACATGATCTGTATTACTAT 58.149 33.333 0.00 0.00 35.91 2.12
5439 5795 2.340337 TGCACGAGTTCACATGATCTG 58.660 47.619 0.00 0.00 0.00 2.90
5441 5797 5.611197 CGATAATGCACGAGTTCACATGATC 60.611 44.000 0.00 0.00 30.11 2.92
5442 5798 4.209911 CGATAATGCACGAGTTCACATGAT 59.790 41.667 0.00 0.00 0.00 2.45
5443 5799 3.551485 CGATAATGCACGAGTTCACATGA 59.449 43.478 0.00 0.00 0.00 3.07
5444 5800 3.306973 ACGATAATGCACGAGTTCACATG 59.693 43.478 1.06 0.00 0.00 3.21
5445 5801 3.521560 ACGATAATGCACGAGTTCACAT 58.478 40.909 1.06 0.00 0.00 3.21
5446 5802 2.954316 ACGATAATGCACGAGTTCACA 58.046 42.857 1.06 0.00 0.00 3.58
5447 5803 5.637104 AATACGATAATGCACGAGTTCAC 57.363 39.130 1.06 0.00 0.00 3.18
5448 5804 7.940178 ATAAATACGATAATGCACGAGTTCA 57.060 32.000 1.06 0.00 0.00 3.18
5449 5805 9.723299 GTAATAAATACGATAATGCACGAGTTC 57.277 33.333 1.06 0.00 0.00 3.01
5450 5806 9.472361 AGTAATAAATACGATAATGCACGAGTT 57.528 29.630 1.06 0.00 39.62 3.01
5563 5919 0.537188 GGAGAACTCGGCATCCAAGA 59.463 55.000 0.00 0.00 0.00 3.02
5632 5988 0.620556 TGCTTCCATCCCTTGTCTCC 59.379 55.000 0.00 0.00 0.00 3.71
5689 6045 2.887568 CCGACGAGCCATGCTGTC 60.888 66.667 0.00 1.45 39.88 3.51
5743 6099 1.227999 CGTTGGCTTCTTTCTCGGCA 61.228 55.000 0.00 0.00 0.00 5.69
5782 6138 5.552178 ACCACTCATCAAAACCTTAGACTC 58.448 41.667 0.00 0.00 0.00 3.36
5783 6139 5.513267 GGACCACTCATCAAAACCTTAGACT 60.513 44.000 0.00 0.00 0.00 3.24
5784 6140 4.695928 GGACCACTCATCAAAACCTTAGAC 59.304 45.833 0.00 0.00 0.00 2.59
5806 6162 2.093106 AGTGAGTAGAGTTACGCCTGG 58.907 52.381 0.00 0.00 34.88 4.45
5863 6224 5.914033 AGAGAGTGCAAAACTACTGTTACA 58.086 37.500 0.00 0.00 40.07 2.41
5892 6255 3.245797 CGAAAAGAGAGCGATGTTGAGA 58.754 45.455 0.00 0.00 0.00 3.27
5896 6259 2.989840 CTCACGAAAAGAGAGCGATGTT 59.010 45.455 0.00 0.00 35.09 2.71
5898 6261 2.868662 TCTCACGAAAAGAGAGCGATG 58.131 47.619 0.00 0.00 37.22 3.84
5900 6263 4.017380 GTATCTCACGAAAAGAGAGCGA 57.983 45.455 0.00 0.00 44.60 4.93
5942 6305 3.305897 CGCGCAACACATACTGAAGAATA 59.694 43.478 8.75 0.00 0.00 1.75
5943 6306 2.094258 CGCGCAACACATACTGAAGAAT 59.906 45.455 8.75 0.00 0.00 2.40
5964 6327 1.674962 GACAGGAATCATGCCTTGAGC 59.325 52.381 0.00 0.00 37.89 4.26
5994 6400 0.112995 AATCCCAGGAGCACAAGCAA 59.887 50.000 0.00 0.00 45.49 3.91
6000 6406 4.829492 AGCATAAATAAATCCCAGGAGCAC 59.171 41.667 0.00 0.00 0.00 4.40
6023 6429 1.142531 CTACATCAGCAGCTCGGCA 59.857 57.895 0.00 0.00 35.83 5.69
6033 6439 5.836821 TCTTGTACTAGTGGCTACATCAG 57.163 43.478 5.39 0.00 0.00 2.90
6042 6448 6.127591 ACTCTGCAGTATTCTTGTACTAGTGG 60.128 42.308 14.67 0.00 33.29 4.00
6043 6449 6.857956 ACTCTGCAGTATTCTTGTACTAGTG 58.142 40.000 14.67 0.00 33.29 2.74
6044 6450 6.659668 TGACTCTGCAGTATTCTTGTACTAGT 59.340 38.462 14.67 4.52 33.29 2.57
6048 6454 5.955488 TCTGACTCTGCAGTATTCTTGTAC 58.045 41.667 14.67 0.00 37.20 2.90
6064 6470 8.898761 CCATATATGTACCTGTATCTCTGACTC 58.101 40.741 11.73 0.00 0.00 3.36
6067 6473 7.340487 CAGCCATATATGTACCTGTATCTCTGA 59.660 40.741 11.73 0.00 0.00 3.27
6096 6502 4.164294 CAGCAAGAGTAAAAATGCAGAGC 58.836 43.478 0.00 0.00 41.18 4.09
6107 6513 4.702831 TCACAATGACACAGCAAGAGTAA 58.297 39.130 0.00 0.00 0.00 2.24
6113 6519 2.861274 TCCATCACAATGACACAGCAA 58.139 42.857 0.00 0.00 34.61 3.91
6116 6522 4.879545 TGATGATCCATCACAATGACACAG 59.120 41.667 5.61 0.00 44.60 3.66
6133 6539 3.459232 AACGATGTCACCGATGATGAT 57.541 42.857 0.00 0.00 37.14 2.45
6149 6598 4.052159 TCGGTTAAACACTACCAAACGA 57.948 40.909 0.00 0.00 37.74 3.85
6159 6608 5.945466 TCCTAAAACCATCGGTTAAACAC 57.055 39.130 0.00 0.00 46.20 3.32
6176 6625 8.581578 GGTGGATCTAAACAAAACAAATCCTAA 58.418 33.333 0.00 0.00 33.82 2.69
6183 6633 4.342665 GGTGGGTGGATCTAAACAAAACAA 59.657 41.667 0.00 0.00 0.00 2.83
6184 6634 3.892588 GGTGGGTGGATCTAAACAAAACA 59.107 43.478 0.00 0.00 0.00 2.83
6191 6641 2.626785 TCTGTGGTGGGTGGATCTAAA 58.373 47.619 0.00 0.00 0.00 1.85
6204 6654 0.251341 GGGTTTGGCTCATCTGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
6205 6655 0.967380 GGGGTTTGGCTCATCTGTGG 60.967 60.000 0.00 0.00 0.00 4.17
6221 6676 4.028490 TAACAGGCCACAGCGGGG 62.028 66.667 5.01 0.00 41.24 5.73
6227 6682 0.179004 CAGGGTTGTAACAGGCCACA 60.179 55.000 5.01 0.00 0.00 4.17
6228 6683 0.893727 CCAGGGTTGTAACAGGCCAC 60.894 60.000 5.01 0.00 0.00 5.01
6229 6684 1.458486 CCAGGGTTGTAACAGGCCA 59.542 57.895 5.01 0.00 0.00 5.36
6239 6694 1.856265 GAGTTTCAGCGCCAGGGTTG 61.856 60.000 2.29 0.00 0.00 3.77
6251 6706 4.974368 ATTTCACCAAACACGAGTTTCA 57.026 36.364 8.06 0.00 45.80 2.69
6291 6746 7.012044 ACGCCTTTTCTCGCTTTATACAAATAT 59.988 33.333 0.00 0.00 0.00 1.28
6292 6747 6.314400 ACGCCTTTTCTCGCTTTATACAAATA 59.686 34.615 0.00 0.00 0.00 1.40
6293 6748 5.123344 ACGCCTTTTCTCGCTTTATACAAAT 59.877 36.000 0.00 0.00 0.00 2.32
6294 6749 4.453136 ACGCCTTTTCTCGCTTTATACAAA 59.547 37.500 0.00 0.00 0.00 2.83
6295 6750 3.998341 ACGCCTTTTCTCGCTTTATACAA 59.002 39.130 0.00 0.00 0.00 2.41
6296 6751 3.592059 ACGCCTTTTCTCGCTTTATACA 58.408 40.909 0.00 0.00 0.00 2.29
6297 6752 3.001026 GGACGCCTTTTCTCGCTTTATAC 59.999 47.826 0.00 0.00 0.00 1.47
6298 6753 3.192466 GGACGCCTTTTCTCGCTTTATA 58.808 45.455 0.00 0.00 0.00 0.98
6299 6754 2.007608 GGACGCCTTTTCTCGCTTTAT 58.992 47.619 0.00 0.00 0.00 1.40
6300 6755 1.435577 GGACGCCTTTTCTCGCTTTA 58.564 50.000 0.00 0.00 0.00 1.85
6317 6772 2.058001 ACATCATCCAGCGACCGGA 61.058 57.895 9.46 0.00 36.84 5.14
6324 6779 0.883153 TGTGCAACACATCATCCAGC 59.117 50.000 0.00 0.00 45.67 4.85
6327 6787 4.637534 ACTATTCTGTGCAACACATCATCC 59.362 41.667 0.14 0.00 45.67 3.51
6349 6809 4.506288 GCAATACTTTGTTCCAAACACCAC 59.494 41.667 0.00 0.00 41.97 4.16
6352 6812 4.055360 GGGCAATACTTTGTTCCAAACAC 58.945 43.478 0.00 0.00 41.97 3.32
6353 6813 3.070302 GGGGCAATACTTTGTTCCAAACA 59.930 43.478 0.00 0.00 40.21 2.83
6356 6816 3.161866 GAGGGGCAATACTTTGTTCCAA 58.838 45.455 0.00 0.00 35.17 3.53
6358 6818 2.100197 GGAGGGGCAATACTTTGTTCC 58.900 52.381 0.00 0.00 35.17 3.62
6362 6822 2.755103 GAGTTGGAGGGGCAATACTTTG 59.245 50.000 0.00 0.00 35.85 2.77
6363 6823 2.291605 GGAGTTGGAGGGGCAATACTTT 60.292 50.000 0.00 0.00 0.00 2.66
6366 6826 0.623723 TGGAGTTGGAGGGGCAATAC 59.376 55.000 0.00 0.00 0.00 1.89
6367 6827 1.607225 ATGGAGTTGGAGGGGCAATA 58.393 50.000 0.00 0.00 0.00 1.90
6368 6828 1.607225 TATGGAGTTGGAGGGGCAAT 58.393 50.000 0.00 0.00 0.00 3.56
6369 6829 1.215173 CATATGGAGTTGGAGGGGCAA 59.785 52.381 0.00 0.00 0.00 4.52
6371 6831 1.140312 TCATATGGAGTTGGAGGGGC 58.860 55.000 2.13 0.00 0.00 5.80
6383 6845 2.086869 GGATTCGTGGGCATCATATGG 58.913 52.381 2.13 0.00 0.00 2.74
6391 6853 2.159382 GAAAGAAAGGATTCGTGGGCA 58.841 47.619 0.00 0.00 40.63 5.36
6397 6859 6.734104 AACATGAGAGAAAGAAAGGATTCG 57.266 37.500 0.00 0.00 40.63 3.34
6414 6876 5.771153 CCATGTATGTATGGCAAACATGA 57.229 39.130 21.46 0.00 41.02 3.07
6432 6894 9.864034 GTATGAATGAATTAACTAACGACCATG 57.136 33.333 0.00 0.00 0.00 3.66
6433 6895 9.607988 TGTATGAATGAATTAACTAACGACCAT 57.392 29.630 0.00 0.00 0.00 3.55
6457 7055 3.954200 TGTCTCAACCATGCATGTATGT 58.046 40.909 24.58 13.08 0.00 2.29
6461 7059 4.084287 AGATTTGTCTCAACCATGCATGT 58.916 39.130 24.58 10.59 0.00 3.21
6465 7063 5.048504 TCTCAAAGATTTGTCTCAACCATGC 60.049 40.000 5.29 0.00 39.18 4.06
6488 7098 5.195001 TGCAAAGTGTTCAGGGTTATTTC 57.805 39.130 0.00 0.00 0.00 2.17
6491 7101 4.561326 GCAATGCAAAGTGTTCAGGGTTAT 60.561 41.667 0.00 0.00 0.00 1.89
6515 7128 2.362889 CCGGGGAAAAGGCTGCAT 60.363 61.111 0.50 0.00 0.00 3.96
6568 7181 4.593864 CTAGAAGGAGCGGCGGGC 62.594 72.222 9.78 0.00 44.05 6.13
6569 7182 3.917760 CCTAGAAGGAGCGGCGGG 61.918 72.222 9.78 0.00 37.67 6.13
6570 7183 2.833582 TCCTAGAAGGAGCGGCGG 60.834 66.667 9.78 0.00 40.06 6.13
6571 7184 2.413765 GTCCTAGAAGGAGCGGCG 59.586 66.667 0.51 0.51 46.90 6.46
6585 7198 2.024871 CGTCGCAGATCTCCGTCC 59.975 66.667 5.85 0.00 40.67 4.79
6586 7199 2.652496 GCGTCGCAGATCTCCGTC 60.652 66.667 13.44 0.00 40.67 4.79
6587 7200 3.440415 TGCGTCGCAGATCTCCGT 61.440 61.111 17.58 0.00 40.67 4.69
6589 7202 2.583593 GGTGCGTCGCAGATCTCC 60.584 66.667 22.42 14.23 40.08 3.71
6600 7213 3.112075 CGACATTCTGCGGTGCGT 61.112 61.111 0.00 0.00 0.00 5.24
6604 7217 1.005037 TGCTTCGACATTCTGCGGT 60.005 52.632 0.00 0.00 0.00 5.68
6608 7221 3.681417 TCTTCATGTGCTTCGACATTCTG 59.319 43.478 0.00 0.00 34.18 3.02
6612 7235 2.350522 GGTCTTCATGTGCTTCGACAT 58.649 47.619 0.00 0.00 37.01 3.06
6620 7243 3.134127 GGGCGGGTCTTCATGTGC 61.134 66.667 0.00 0.00 0.00 4.57
6640 7263 1.269569 CCTTTTGAACTTCGGCAACCC 60.270 52.381 0.00 0.00 0.00 4.11
6641 7264 1.868109 GCCTTTTGAACTTCGGCAACC 60.868 52.381 0.00 0.00 40.41 3.77
6642 7265 1.202359 TGCCTTTTGAACTTCGGCAAC 60.202 47.619 5.83 0.00 46.76 4.17
6643 7266 1.107114 TGCCTTTTGAACTTCGGCAA 58.893 45.000 5.83 0.00 46.76 4.52
6645 7268 0.951558 TCTGCCTTTTGAACTTCGGC 59.048 50.000 0.00 0.00 41.06 5.54
6646 7269 3.066760 ACTTTCTGCCTTTTGAACTTCGG 59.933 43.478 0.00 0.00 0.00 4.30
6647 7270 4.037690 CACTTTCTGCCTTTTGAACTTCG 58.962 43.478 0.00 0.00 0.00 3.79
6648 7271 4.363138 CCACTTTCTGCCTTTTGAACTTC 58.637 43.478 0.00 0.00 0.00 3.01
6649 7272 3.430790 GCCACTTTCTGCCTTTTGAACTT 60.431 43.478 0.00 0.00 0.00 2.66
6650 7273 2.101415 GCCACTTTCTGCCTTTTGAACT 59.899 45.455 0.00 0.00 0.00 3.01
6651 7274 2.473816 GCCACTTTCTGCCTTTTGAAC 58.526 47.619 0.00 0.00 0.00 3.18
6652 7275 1.066908 CGCCACTTTCTGCCTTTTGAA 59.933 47.619 0.00 0.00 0.00 2.69
6653 7276 0.667993 CGCCACTTTCTGCCTTTTGA 59.332 50.000 0.00 0.00 0.00 2.69
6654 7277 0.667993 TCGCCACTTTCTGCCTTTTG 59.332 50.000 0.00 0.00 0.00 2.44
6655 7278 0.954452 CTCGCCACTTTCTGCCTTTT 59.046 50.000 0.00 0.00 0.00 2.27
6665 7288 1.768684 ATGTGACCACCTCGCCACTT 61.769 55.000 0.00 0.00 0.00 3.16
6673 7296 2.034687 GCAGGCATGTGACCACCT 59.965 61.111 0.00 0.00 0.00 4.00
6676 7299 1.002990 CAGAGCAGGCATGTGACCA 60.003 57.895 0.00 0.00 0.00 4.02
6690 7328 1.440708 CAAGGTGAAGCAGAGCAGAG 58.559 55.000 0.00 0.00 0.00 3.35
6703 7341 1.671901 AACCGTTGTTGGGCAAGGTG 61.672 55.000 0.00 0.00 40.30 4.00
6704 7342 1.380650 AACCGTTGTTGGGCAAGGT 60.381 52.632 0.00 0.00 40.30 3.50
6706 7344 4.728058 CAACCGTTGTTGGGCAAG 57.272 55.556 2.87 0.00 46.56 4.01
6713 7351 1.540707 ACGTGAAAACCAACCGTTGTT 59.459 42.857 10.34 2.53 33.93 2.83
6716 7354 1.451067 TCACGTGAAAACCAACCGTT 58.549 45.000 17.62 0.00 35.70 4.44
6717 7355 1.130938 GTTCACGTGAAAACCAACCGT 59.869 47.619 31.20 0.00 35.58 4.83
6718 7356 1.130749 TGTTCACGTGAAAACCAACCG 59.869 47.619 31.20 0.00 35.58 4.44
6719 7357 2.521996 GTGTTCACGTGAAAACCAACC 58.478 47.619 32.62 19.60 36.50 3.77
6720 7358 2.170770 CGTGTTCACGTGAAAACCAAC 58.829 47.619 34.81 22.78 38.70 3.77
6721 7359 1.130749 CCGTGTTCACGTGAAAACCAA 59.869 47.619 34.81 16.98 38.70 3.67
6722 7360 0.727970 CCGTGTTCACGTGAAAACCA 59.272 50.000 34.81 25.05 38.70 3.67
6738 7381 2.722201 GCCGTCCTGATTCCTCCGT 61.722 63.158 0.00 0.00 0.00 4.69
6739 7382 2.107141 GCCGTCCTGATTCCTCCG 59.893 66.667 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.