Multiple sequence alignment - TraesCS6D01G387300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G387300 chr6D 100.000 3215 0 0 1 3215 464342809 464346023 0.000000e+00 5938.0
1 TraesCS6D01G387300 chr6D 91.520 1250 82 15 923 2164 464296228 464297461 0.000000e+00 1700.0
2 TraesCS6D01G387300 chr6D 86.792 477 56 7 2585 3058 464401862 464402334 2.840000e-145 525.0
3 TraesCS6D01G387300 chr6D 77.694 399 64 19 2666 3053 464398914 464399298 1.500000e-53 220.0
4 TraesCS6D01G387300 chr6D 88.971 136 7 3 182 317 467306178 467306051 9.230000e-36 161.0
5 TraesCS6D01G387300 chr6D 100.000 29 0 0 334 362 467306024 467305996 2.000000e-03 54.7
6 TraesCS6D01G387300 chr6A 92.667 1691 71 24 701 2357 610928880 610930551 0.000000e+00 2386.0
7 TraesCS6D01G387300 chr6A 87.690 658 68 13 2414 3068 610930756 610931403 0.000000e+00 754.0
8 TraesCS6D01G387300 chr6A 91.200 125 2 2 521 645 610928489 610928604 9.230000e-36 161.0
9 TraesCS6D01G387300 chr6A 83.696 184 8 8 1 184 613763248 613763087 1.540000e-33 154.0
10 TraesCS6D01G387300 chr6A 90.164 61 2 1 8 64 610928307 610928367 3.440000e-10 76.8
11 TraesCS6D01G387300 chr6A 89.583 48 0 3 316 362 613762861 613762818 4.480000e-04 56.5
12 TraesCS6D01G387300 chr6B 92.802 1417 66 18 974 2364 708046307 708047713 0.000000e+00 2019.0
13 TraesCS6D01G387300 chr6B 88.399 862 58 12 1498 2357 708035121 708035942 0.000000e+00 1000.0
14 TraesCS6D01G387300 chr6B 88.571 350 35 3 2695 3041 708070701 708071048 1.380000e-113 420.0
15 TraesCS6D01G387300 chr6B 82.020 406 40 13 2527 2925 708179004 708179383 6.700000e-82 315.0
16 TraesCS6D01G387300 chr6B 87.554 233 22 6 2756 2985 708047721 708047949 2.460000e-66 263.0
17 TraesCS6D01G387300 chr6B 85.789 190 5 9 3 184 708039156 708039331 7.080000e-42 182.0
18 TraesCS6D01G387300 chr6B 92.000 125 5 2 191 313 708040690 708040811 1.530000e-38 171.0
19 TraesCS6D01G387300 chr6B 82.514 183 10 8 2 184 712661336 712661176 1.200000e-29 141.0
20 TraesCS6D01G387300 chr6B 95.455 66 0 3 786 850 708045823 708045886 5.670000e-18 102.0
21 TraesCS6D01G387300 chr6B 86.842 76 2 2 315 390 708040921 708040988 9.560000e-11 78.7
22 TraesCS6D01G387300 chr6B 88.710 62 0 2 492 550 708041936 708041993 5.760000e-08 69.4
23 TraesCS6D01G387300 chr6B 90.909 44 0 2 319 362 712661049 712661010 4.480000e-04 56.5
24 TraesCS6D01G387300 chr4A 89.722 1401 97 17 923 2308 216438288 216436920 0.000000e+00 1746.0
25 TraesCS6D01G387300 chr4B 88.574 1339 116 15 982 2306 281603442 281604757 0.000000e+00 1591.0
26 TraesCS6D01G387300 chr1D 95.238 42 2 0 2316 2357 11401625 11401666 2.070000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G387300 chr6D 464342809 464346023 3214 False 5938.0000 5938 100.000000 1 3215 1 chr6D.!!$F2 3214
1 TraesCS6D01G387300 chr6D 464296228 464297461 1233 False 1700.0000 1700 91.520000 923 2164 1 chr6D.!!$F1 1241
2 TraesCS6D01G387300 chr6D 464398914 464402334 3420 False 372.5000 525 82.243000 2585 3058 2 chr6D.!!$F3 473
3 TraesCS6D01G387300 chr6A 610928307 610931403 3096 False 844.4500 2386 90.430250 8 3068 4 chr6A.!!$F1 3060
4 TraesCS6D01G387300 chr6B 708035121 708047949 12828 False 485.6375 2019 89.693875 3 2985 8 chr6B.!!$F3 2982
5 TraesCS6D01G387300 chr4A 216436920 216438288 1368 True 1746.0000 1746 89.722000 923 2308 1 chr4A.!!$R1 1385
6 TraesCS6D01G387300 chr4B 281603442 281604757 1315 False 1591.0000 1591 88.574000 982 2306 1 chr4B.!!$F1 1324

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 11009 0.036671 TGTCGTCGTCTGCTCTCCTA 60.037 55.0 0.0 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2568 13296 0.09715 GAATGCGAAAGAACGGCCTC 59.903 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 4075 5.105063 GCAGAAAATACCTTTGGAATGAGC 58.895 41.667 0.00 0.00 0.00 4.26
80 4118 1.000843 TGTACTCGTGAACATGCAGCT 59.999 47.619 0.00 0.00 0.00 4.24
85 4123 3.056821 ACTCGTGAACATGCAGCTACTTA 60.057 43.478 0.00 0.00 0.00 2.24
116 4154 8.871686 GTTGATGACCATTAATATTTGTTCCC 57.128 34.615 0.00 0.00 0.00 3.97
140 4178 2.009774 CCTTTGATAACAGGACAGCCG 58.990 52.381 0.00 0.00 39.96 5.52
141 4179 2.354704 CCTTTGATAACAGGACAGCCGA 60.355 50.000 0.00 0.00 39.96 5.54
142 4180 2.672961 TTGATAACAGGACAGCCGAG 57.327 50.000 0.00 0.00 39.96 4.63
143 4181 0.175760 TGATAACAGGACAGCCGAGC 59.824 55.000 0.00 0.00 39.96 5.03
144 4182 0.530870 GATAACAGGACAGCCGAGCC 60.531 60.000 0.00 0.00 39.96 4.70
178 4216 8.515414 AGAATAACAAGGTGTAAAGAAATCTGC 58.485 33.333 0.00 0.00 0.00 4.26
184 4222 1.810151 TGTAAAGAAATCTGCCGGCAC 59.190 47.619 29.03 16.31 0.00 5.01
186 4224 1.327303 AAAGAAATCTGCCGGCACAA 58.673 45.000 29.03 17.85 0.00 3.33
187 4225 0.598065 AAGAAATCTGCCGGCACAAC 59.402 50.000 29.03 15.07 0.00 3.32
188 4226 0.250901 AGAAATCTGCCGGCACAACT 60.251 50.000 29.03 17.12 0.00 3.16
189 4227 0.598065 GAAATCTGCCGGCACAACTT 59.402 50.000 29.03 16.38 0.00 2.66
190 4228 0.598065 AAATCTGCCGGCACAACTTC 59.402 50.000 29.03 0.00 0.00 3.01
191 4229 0.537143 AATCTGCCGGCACAACTTCA 60.537 50.000 29.03 0.69 0.00 3.02
193 4231 1.165907 TCTGCCGGCACAACTTCAAG 61.166 55.000 29.03 13.09 0.00 3.02
194 4232 1.447317 CTGCCGGCACAACTTCAAGT 61.447 55.000 29.03 0.00 0.00 3.16
195 4233 1.034838 TGCCGGCACAACTTCAAGTT 61.035 50.000 29.03 0.00 39.39 2.66
196 4234 0.102300 GCCGGCACAACTTCAAGTTT 59.898 50.000 24.80 0.00 36.03 2.66
197 4235 1.335496 GCCGGCACAACTTCAAGTTTA 59.665 47.619 24.80 0.00 36.03 2.01
199 4237 3.368495 CCGGCACAACTTCAAGTTTAAC 58.632 45.455 0.00 0.00 36.03 2.01
243 5635 5.312079 AGGAGAATGGAACAAGAGTTTCAG 58.688 41.667 0.00 0.00 46.04 3.02
273 5665 8.112822 TGAAAGGTCCAATATAAATCAGGTCAA 58.887 33.333 0.00 0.00 0.00 3.18
329 5825 9.893305 TGTAACTAACGAACTAACTAACTAACC 57.107 33.333 0.00 0.00 0.00 2.85
330 5826 9.052080 GTAACTAACGAACTAACTAACTAACCG 57.948 37.037 0.00 0.00 0.00 4.44
331 5827 7.203255 ACTAACGAACTAACTAACTAACCGT 57.797 36.000 0.00 0.00 0.00 4.83
332 5828 7.078228 ACTAACGAACTAACTAACTAACCGTG 58.922 38.462 0.00 0.00 0.00 4.94
334 5830 3.299020 CGAACTAACTAACTAACCGTGCG 59.701 47.826 0.00 0.00 0.00 5.34
358 5854 5.578727 GTGCAAACTTAGTGGATCTAGAGTG 59.421 44.000 0.00 0.00 0.00 3.51
359 5855 5.112686 GCAAACTTAGTGGATCTAGAGTGG 58.887 45.833 0.00 0.00 0.00 4.00
360 5856 5.112686 CAAACTTAGTGGATCTAGAGTGGC 58.887 45.833 0.00 0.00 0.00 5.01
361 5857 3.982516 ACTTAGTGGATCTAGAGTGGCA 58.017 45.455 0.00 0.00 0.00 4.92
390 5886 2.173782 TGGGTTTCACAGCAAGACCTTA 59.826 45.455 0.00 0.00 0.00 2.69
391 5887 3.219281 GGGTTTCACAGCAAGACCTTAA 58.781 45.455 0.00 0.00 0.00 1.85
392 5888 3.826729 GGGTTTCACAGCAAGACCTTAAT 59.173 43.478 0.00 0.00 0.00 1.40
394 5890 5.221441 GGGTTTCACAGCAAGACCTTAATTT 60.221 40.000 0.00 0.00 0.00 1.82
395 5891 6.280643 GGTTTCACAGCAAGACCTTAATTTT 58.719 36.000 0.00 0.00 0.00 1.82
398 5894 6.317789 TCACAGCAAGACCTTAATTTTCAG 57.682 37.500 0.00 0.00 0.00 3.02
399 5895 5.827797 TCACAGCAAGACCTTAATTTTCAGT 59.172 36.000 0.00 0.00 0.00 3.41
400 5896 6.321181 TCACAGCAAGACCTTAATTTTCAGTT 59.679 34.615 0.00 0.00 0.00 3.16
438 6777 2.169144 CTCCTTTCAATTCAATGGCCCC 59.831 50.000 0.00 0.00 0.00 5.80
439 6778 1.134729 CCTTTCAATTCAATGGCCCCG 60.135 52.381 0.00 0.00 0.00 5.73
440 6779 0.248843 TTTCAATTCAATGGCCCCGC 59.751 50.000 0.00 0.00 0.00 6.13
454 6793 2.587889 CCGCCCGGATAACCTTGT 59.412 61.111 0.73 0.00 37.50 3.16
455 6794 1.523032 CCGCCCGGATAACCTTGTC 60.523 63.158 0.73 0.00 37.50 3.18
456 6795 1.523032 CGCCCGGATAACCTTGTCC 60.523 63.158 0.73 0.00 35.36 4.02
457 6796 1.153025 GCCCGGATAACCTTGTCCC 60.153 63.158 0.73 0.00 35.27 4.46
490 6829 6.076981 TCTTTGAAGAAAGAAACATGCCTC 57.923 37.500 0.00 0.00 43.79 4.70
516 6872 1.953686 TGCTGTCCTTGCTTACAAACC 59.046 47.619 0.00 0.00 34.74 3.27
517 6873 2.230660 GCTGTCCTTGCTTACAAACCT 58.769 47.619 0.00 0.00 34.74 3.50
518 6874 3.181449 TGCTGTCCTTGCTTACAAACCTA 60.181 43.478 0.00 0.00 34.74 3.08
519 6875 4.010349 GCTGTCCTTGCTTACAAACCTAT 58.990 43.478 0.00 0.00 34.74 2.57
648 10614 3.492337 TGGTCAAATAAGTGGGGACAAC 58.508 45.455 0.00 0.00 46.06 3.32
661 10627 2.515057 ACAACGGCGGCTCAACAA 60.515 55.556 13.24 0.00 0.00 2.83
663 10629 1.285641 CAACGGCGGCTCAACAAAT 59.714 52.632 13.24 0.00 0.00 2.32
665 10631 0.889186 AACGGCGGCTCAACAAATCT 60.889 50.000 13.24 0.00 0.00 2.40
666 10632 1.298859 ACGGCGGCTCAACAAATCTC 61.299 55.000 13.24 0.00 0.00 2.75
667 10633 1.021390 CGGCGGCTCAACAAATCTCT 61.021 55.000 7.61 0.00 0.00 3.10
683 10650 3.749665 TCTCTTTGCCCAAAAACATGG 57.250 42.857 0.00 0.00 40.35 3.66
684 10651 2.145536 CTCTTTGCCCAAAAACATGGC 58.854 47.619 0.00 0.00 45.56 4.40
689 10656 1.077915 GCCCAAAAACATGGCATTCG 58.922 50.000 0.00 0.00 44.70 3.34
690 10657 1.607767 GCCCAAAAACATGGCATTCGT 60.608 47.619 0.00 0.00 44.70 3.85
691 10658 2.765122 CCCAAAAACATGGCATTCGTT 58.235 42.857 0.00 0.00 39.26 3.85
694 10661 3.554752 CCAAAAACATGGCATTCGTTCCT 60.555 43.478 0.00 0.00 32.78 3.36
696 10663 2.496899 AACATGGCATTCGTTCCTCT 57.503 45.000 0.00 0.00 0.00 3.69
697 10664 2.496899 ACATGGCATTCGTTCCTCTT 57.503 45.000 0.00 0.00 0.00 2.85
726 10940 4.554036 GCCAGAGGGATCACCGGC 62.554 72.222 0.00 5.01 46.96 6.13
727 10941 4.227134 CCAGAGGGATCACCGGCG 62.227 72.222 0.00 0.00 46.96 6.46
728 10942 4.227134 CAGAGGGATCACCGGCGG 62.227 72.222 27.06 27.06 46.96 6.13
784 10999 1.225799 GAGAGCTCGTGTCGTCGTC 60.226 63.158 8.37 0.00 0.00 4.20
790 11005 1.902716 CTCGTGTCGTCGTCTGCTCT 61.903 60.000 0.00 0.00 0.00 4.09
793 11008 1.302591 TGTCGTCGTCTGCTCTCCT 60.303 57.895 0.00 0.00 0.00 3.69
794 11009 0.036671 TGTCGTCGTCTGCTCTCCTA 60.037 55.000 0.00 0.00 0.00 2.94
795 11010 0.653636 GTCGTCGTCTGCTCTCCTAG 59.346 60.000 0.00 0.00 0.00 3.02
796 11011 0.249676 TCGTCGTCTGCTCTCCTAGT 59.750 55.000 0.00 0.00 0.00 2.57
797 11012 1.479730 TCGTCGTCTGCTCTCCTAGTA 59.520 52.381 0.00 0.00 0.00 1.82
866 11082 3.079131 GCCACCACATCAGCGATTA 57.921 52.632 0.00 0.00 0.00 1.75
867 11083 0.940126 GCCACCACATCAGCGATTAG 59.060 55.000 0.00 0.00 0.00 1.73
868 11084 1.586422 CCACCACATCAGCGATTAGG 58.414 55.000 0.00 0.00 0.00 2.69
869 11085 1.138859 CCACCACATCAGCGATTAGGA 59.861 52.381 10.73 0.00 0.00 2.94
870 11086 2.419990 CCACCACATCAGCGATTAGGAA 60.420 50.000 10.73 0.00 0.00 3.36
871 11087 3.270027 CACCACATCAGCGATTAGGAAA 58.730 45.455 10.73 0.00 0.00 3.13
913 11130 4.883354 GATTGCCTCCCCCGCCAG 62.883 72.222 0.00 0.00 0.00 4.85
960 11183 2.047179 GGCTTCCCCACACTCGAC 60.047 66.667 0.00 0.00 0.00 4.20
961 11184 2.584391 GGCTTCCCCACACTCGACT 61.584 63.158 0.00 0.00 0.00 4.18
962 11185 1.079750 GCTTCCCCACACTCGACTC 60.080 63.158 0.00 0.00 0.00 3.36
963 11186 1.213013 CTTCCCCACACTCGACTCG 59.787 63.158 0.00 0.00 0.00 4.18
964 11187 1.228337 TTCCCCACACTCGACTCGA 60.228 57.895 0.29 0.29 0.00 4.04
1053 11566 2.825836 CCCAAGAGCACGGCCATC 60.826 66.667 2.24 0.00 0.00 3.51
1054 11567 3.197790 CCAAGAGCACGGCCATCG 61.198 66.667 2.24 0.00 45.88 3.84
1055 11568 3.869272 CAAGAGCACGGCCATCGC 61.869 66.667 2.24 0.80 43.89 4.58
1195 11756 3.721706 AGCCTTTCCGCTCCCTGG 61.722 66.667 0.00 0.00 32.06 4.45
1515 12077 4.409218 GTCGACTACCGCGCCACA 62.409 66.667 8.70 0.00 38.37 4.17
1832 12394 0.528466 TTCATCGCGGACTGCATCTC 60.528 55.000 6.13 0.00 46.97 2.75
1976 12540 3.917329 CATTCAGATCATGGATGGTGC 57.083 47.619 0.00 0.00 40.78 5.01
1992 12556 2.512515 GCCATCTGGGTGCTCGAC 60.513 66.667 0.00 0.00 39.65 4.20
2112 12677 2.488820 GGGGAGTACAGCGACGAC 59.511 66.667 0.00 0.00 0.00 4.34
2199 12764 3.470888 GGGCAGGAGCTAGGCGAA 61.471 66.667 0.00 0.00 41.70 4.70
2215 12780 2.197577 GCGAACAGACCATCTTCTAGC 58.802 52.381 0.00 0.00 0.00 3.42
2244 12817 4.082125 CCTTCCAGCTTGTAAATTCAGGT 58.918 43.478 0.00 0.00 0.00 4.00
2270 12843 3.025262 GAGTGTAGGGAGGTAAGTGAGG 58.975 54.545 0.00 0.00 0.00 3.86
2286 12859 3.135530 AGTGAGGCTTCTGAGTTTTGACT 59.864 43.478 0.00 0.00 0.00 3.41
2365 12962 5.510323 GTCCGGCTTTAAATTACATCAAACG 59.490 40.000 0.00 0.00 0.00 3.60
2386 12983 4.451435 ACGGAGTTTAAAAAGCAGAGTAGC 59.549 41.667 0.00 0.00 37.78 3.58
2387 12984 4.434330 CGGAGTTTAAAAAGCAGAGTAGCG 60.434 45.833 0.00 0.00 40.15 4.26
2388 12985 4.395656 GAGTTTAAAAAGCAGAGTAGCGC 58.604 43.478 0.00 0.00 40.15 5.92
2390 12987 4.455877 AGTTTAAAAAGCAGAGTAGCGCAT 59.544 37.500 11.47 0.00 40.15 4.73
2391 12988 5.642063 AGTTTAAAAAGCAGAGTAGCGCATA 59.358 36.000 11.47 0.00 40.15 3.14
2392 12989 5.718649 TTAAAAAGCAGAGTAGCGCATAG 57.281 39.130 11.47 0.00 40.15 2.23
2404 13001 3.020102 CGCATAGCAACACCAAAGC 57.980 52.632 0.00 0.00 0.00 3.51
2405 13002 0.240678 CGCATAGCAACACCAAAGCA 59.759 50.000 0.00 0.00 0.00 3.91
2410 13007 2.638480 AGCAACACCAAAGCAGAGTA 57.362 45.000 0.00 0.00 0.00 2.59
2434 13162 2.049063 AGTCGTGACTGAAGCGCC 60.049 61.111 2.29 0.00 40.75 6.53
2465 13193 2.988493 ACATGCAAATTTTACGCAGCAG 59.012 40.909 7.61 3.64 39.39 4.24
2479 13207 1.378250 AGCAGTTGCAGGCTCCATC 60.378 57.895 6.90 0.00 45.16 3.51
2482 13210 1.022735 CAGTTGCAGGCTCCATCATC 58.977 55.000 0.00 0.00 0.00 2.92
2492 13220 3.522750 AGGCTCCATCATCTGTTCTTTCT 59.477 43.478 0.00 0.00 0.00 2.52
2498 13226 7.522725 GCTCCATCATCTGTTCTTTCTGAAAAA 60.523 37.037 4.18 0.00 36.30 1.94
2538 13266 7.994425 TTTGTTCCAGATAAGTATGCTTCAA 57.006 32.000 0.00 0.00 36.22 2.69
2568 13296 2.332104 CACATCACAGTTCTCTGACCG 58.668 52.381 2.17 0.00 43.76 4.79
2569 13297 2.029918 CACATCACAGTTCTCTGACCGA 60.030 50.000 2.17 0.00 43.76 4.69
2571 13299 1.248486 TCACAGTTCTCTGACCGAGG 58.752 55.000 2.17 0.00 43.76 4.63
2572 13300 0.389166 CACAGTTCTCTGACCGAGGC 60.389 60.000 2.17 0.00 43.76 4.70
2573 13301 1.216710 CAGTTCTCTGACCGAGGCC 59.783 63.158 0.00 0.00 43.76 5.19
2574 13302 2.182030 GTTCTCTGACCGAGGCCG 59.818 66.667 0.00 0.00 40.30 6.13
2576 13304 1.906824 TTCTCTGACCGAGGCCGTT 60.907 57.895 0.00 0.00 40.30 4.44
2577 13305 1.874345 TTCTCTGACCGAGGCCGTTC 61.874 60.000 0.00 0.00 40.30 3.95
2579 13307 1.878656 CTCTGACCGAGGCCGTTCTT 61.879 60.000 0.00 0.00 36.06 2.52
2581 13309 1.005394 TGACCGAGGCCGTTCTTTC 60.005 57.895 0.00 0.00 0.00 2.62
2582 13310 2.048503 ACCGAGGCCGTTCTTTCG 60.049 61.111 0.00 0.00 0.00 3.46
2586 13314 1.635663 CGAGGCCGTTCTTTCGCATT 61.636 55.000 0.00 0.00 0.00 3.56
2589 13317 0.179189 GGCCGTTCTTTCGCATTCTG 60.179 55.000 0.00 0.00 0.00 3.02
2592 14408 2.350388 GCCGTTCTTTCGCATTCTGAAA 60.350 45.455 0.00 0.00 34.39 2.69
2601 14417 6.638063 TCTTTCGCATTCTGAAAAACATTGAG 59.362 34.615 0.00 0.00 35.11 3.02
2630 14446 5.479306 TGCAGTAACAGAAGTTCAGGATAC 58.521 41.667 5.50 6.31 39.15 2.24
2643 14459 5.046159 AGTTCAGGATACGGATTTTGGTGTA 60.046 40.000 0.00 0.00 41.64 2.90
2654 14470 5.278604 GGATTTTGGTGTATCCGTTTATGC 58.721 41.667 0.00 0.00 39.52 3.14
2658 14475 2.237643 TGGTGTATCCGTTTATGCCTGT 59.762 45.455 0.00 0.00 39.52 4.00
2660 14477 3.064820 GGTGTATCCGTTTATGCCTGTTG 59.935 47.826 0.00 0.00 0.00 3.33
2666 14483 1.730121 CGTTTATGCCTGTTGCTGCTG 60.730 52.381 0.00 0.00 42.00 4.41
2677 14494 1.734465 GTTGCTGCTGGTGATCTGTAC 59.266 52.381 0.00 0.00 0.00 2.90
2685 14502 3.194542 GCTGGTGATCTGTACTCACTCTT 59.805 47.826 12.04 0.00 42.14 2.85
2724 14542 4.586884 CCAGGATGCATCTATTAGCACAT 58.413 43.478 25.28 0.00 44.49 3.21
2802 14620 1.243902 AACATGCCAAACTGGTACCG 58.756 50.000 7.57 4.79 40.46 4.02
2827 14645 1.065199 TGCTGTCATTCAAGCTAGGGG 60.065 52.381 0.00 0.00 0.00 4.79
2841 14659 2.183679 CTAGGGGCTCTCAGTTGTCTT 58.816 52.381 0.00 0.00 0.00 3.01
2846 14664 1.609320 GGCTCTCAGTTGTCTTCACCC 60.609 57.143 0.00 0.00 0.00 4.61
2850 14668 0.828022 TCAGTTGTCTTCACCCACGT 59.172 50.000 0.00 0.00 0.00 4.49
2863 14681 1.201647 ACCCACGTCTCACTTGATACG 59.798 52.381 13.73 13.73 45.97 3.06
2896 14716 9.783081 ATTATGATACAATATCACTGCACAAGA 57.217 29.630 0.69 0.00 0.00 3.02
2914 14734 1.329599 AGACGAACTTTGTTGCGGAAC 59.670 47.619 13.47 13.47 0.00 3.62
2932 14752 4.631377 CGGAACTGATTGCTCATTAACTGA 59.369 41.667 0.00 0.00 0.00 3.41
2942 14762 4.708726 CTCATTAACTGAGCCCCAAAAG 57.291 45.455 3.12 0.00 44.73 2.27
2943 14763 4.335416 CTCATTAACTGAGCCCCAAAAGA 58.665 43.478 3.12 0.00 44.73 2.52
2944 14764 4.079253 TCATTAACTGAGCCCCAAAAGAC 58.921 43.478 0.00 0.00 0.00 3.01
3012 14832 5.200483 GTGATAATCCCAATCCAGGAACAA 58.800 41.667 0.00 0.00 36.85 2.83
3076 14896 2.544768 AGCCAAACTGAGAGGGTGT 58.455 52.632 0.00 0.00 0.00 4.16
3077 14897 1.729586 AGCCAAACTGAGAGGGTGTA 58.270 50.000 0.00 0.00 0.00 2.90
3078 14898 2.269940 AGCCAAACTGAGAGGGTGTAT 58.730 47.619 0.00 0.00 0.00 2.29
3079 14899 2.026822 AGCCAAACTGAGAGGGTGTATG 60.027 50.000 0.00 0.00 0.00 2.39
3080 14900 2.359900 CCAAACTGAGAGGGTGTATGC 58.640 52.381 0.00 0.00 0.00 3.14
3081 14901 2.026822 CCAAACTGAGAGGGTGTATGCT 60.027 50.000 0.00 0.00 0.00 3.79
3082 14902 3.005554 CAAACTGAGAGGGTGTATGCTG 58.994 50.000 0.00 0.00 0.00 4.41
3083 14903 2.238084 ACTGAGAGGGTGTATGCTGA 57.762 50.000 0.00 0.00 0.00 4.26
3084 14904 2.540383 ACTGAGAGGGTGTATGCTGAA 58.460 47.619 0.00 0.00 0.00 3.02
3085 14905 2.906389 ACTGAGAGGGTGTATGCTGAAA 59.094 45.455 0.00 0.00 0.00 2.69
3086 14906 3.055530 ACTGAGAGGGTGTATGCTGAAAG 60.056 47.826 0.00 0.00 0.00 2.62
3087 14907 2.237143 TGAGAGGGTGTATGCTGAAAGG 59.763 50.000 0.00 0.00 0.00 3.11
3088 14908 1.561542 AGAGGGTGTATGCTGAAAGGG 59.438 52.381 0.00 0.00 0.00 3.95
3089 14909 0.034089 AGGGTGTATGCTGAAAGGGC 60.034 55.000 0.00 0.00 0.00 5.19
3090 14910 1.376609 GGGTGTATGCTGAAAGGGCG 61.377 60.000 0.00 0.00 0.00 6.13
3091 14911 0.392461 GGTGTATGCTGAAAGGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
3092 14912 0.727398 GTGTATGCTGAAAGGGCGAC 59.273 55.000 0.00 0.00 0.00 5.19
3093 14913 0.323302 TGTATGCTGAAAGGGCGACA 59.677 50.000 0.00 0.00 0.00 4.35
3094 14914 1.065491 TGTATGCTGAAAGGGCGACAT 60.065 47.619 0.00 0.00 0.00 3.06
3095 14915 1.331756 GTATGCTGAAAGGGCGACATG 59.668 52.381 0.00 0.00 0.00 3.21
3096 14916 0.035152 ATGCTGAAAGGGCGACATGA 60.035 50.000 0.00 0.00 0.00 3.07
3097 14917 0.035152 TGCTGAAAGGGCGACATGAT 60.035 50.000 0.00 0.00 0.00 2.45
3098 14918 1.209261 TGCTGAAAGGGCGACATGATA 59.791 47.619 0.00 0.00 0.00 2.15
3099 14919 1.599542 GCTGAAAGGGCGACATGATAC 59.400 52.381 0.00 0.00 0.00 2.24
3100 14920 2.905075 CTGAAAGGGCGACATGATACA 58.095 47.619 0.00 0.00 0.00 2.29
3101 14921 2.609459 CTGAAAGGGCGACATGATACAC 59.391 50.000 0.00 0.00 0.00 2.90
3102 14922 2.027653 TGAAAGGGCGACATGATACACA 60.028 45.455 0.00 0.00 0.00 3.72
3103 14923 3.206150 GAAAGGGCGACATGATACACAT 58.794 45.455 0.00 0.00 40.17 3.21
3117 14937 6.622833 TGATACACATGCATCAACCATAAG 57.377 37.500 0.00 0.00 0.00 1.73
3118 14938 6.355747 TGATACACATGCATCAACCATAAGA 58.644 36.000 0.00 0.00 0.00 2.10
3119 14939 4.970662 ACACATGCATCAACCATAAGAC 57.029 40.909 0.00 0.00 0.00 3.01
3120 14940 3.696051 ACACATGCATCAACCATAAGACC 59.304 43.478 0.00 0.00 0.00 3.85
3121 14941 3.695556 CACATGCATCAACCATAAGACCA 59.304 43.478 0.00 0.00 0.00 4.02
3122 14942 4.340097 CACATGCATCAACCATAAGACCAT 59.660 41.667 0.00 0.00 0.00 3.55
3123 14943 5.532032 CACATGCATCAACCATAAGACCATA 59.468 40.000 0.00 0.00 0.00 2.74
3124 14944 6.039605 CACATGCATCAACCATAAGACCATAA 59.960 38.462 0.00 0.00 0.00 1.90
3125 14945 6.779049 ACATGCATCAACCATAAGACCATAAT 59.221 34.615 0.00 0.00 0.00 1.28
3126 14946 6.638096 TGCATCAACCATAAGACCATAATG 57.362 37.500 0.00 0.00 0.00 1.90
3127 14947 5.009911 TGCATCAACCATAAGACCATAATGC 59.990 40.000 0.00 0.00 37.03 3.56
3128 14948 5.565439 GCATCAACCATAAGACCATAATGCC 60.565 44.000 0.00 0.00 31.87 4.40
3129 14949 5.387113 TCAACCATAAGACCATAATGCCT 57.613 39.130 0.00 0.00 0.00 4.75
3130 14950 5.765510 TCAACCATAAGACCATAATGCCTT 58.234 37.500 0.00 0.00 0.00 4.35
3131 14951 5.827797 TCAACCATAAGACCATAATGCCTTC 59.172 40.000 0.00 0.00 0.00 3.46
3132 14952 4.389374 ACCATAAGACCATAATGCCTTCG 58.611 43.478 0.00 0.00 0.00 3.79
3133 14953 4.141482 ACCATAAGACCATAATGCCTTCGT 60.141 41.667 0.00 0.00 0.00 3.85
3134 14954 5.071250 ACCATAAGACCATAATGCCTTCGTA 59.929 40.000 0.00 0.00 0.00 3.43
3135 14955 5.995282 CCATAAGACCATAATGCCTTCGTAA 59.005 40.000 0.00 0.00 0.00 3.18
3136 14956 6.073222 CCATAAGACCATAATGCCTTCGTAAC 60.073 42.308 0.00 0.00 0.00 2.50
3137 14957 4.755266 AGACCATAATGCCTTCGTAACT 57.245 40.909 0.00 0.00 0.00 2.24
3138 14958 5.864418 AGACCATAATGCCTTCGTAACTA 57.136 39.130 0.00 0.00 0.00 2.24
3139 14959 5.844004 AGACCATAATGCCTTCGTAACTAG 58.156 41.667 0.00 0.00 0.00 2.57
3140 14960 5.363005 AGACCATAATGCCTTCGTAACTAGT 59.637 40.000 0.00 0.00 0.00 2.57
3141 14961 5.985911 ACCATAATGCCTTCGTAACTAGTT 58.014 37.500 13.68 13.68 0.00 2.24
3142 14962 5.815740 ACCATAATGCCTTCGTAACTAGTTG 59.184 40.000 18.56 2.38 0.00 3.16
3143 14963 5.815740 CCATAATGCCTTCGTAACTAGTTGT 59.184 40.000 18.56 0.00 0.00 3.32
3144 14964 6.982141 CCATAATGCCTTCGTAACTAGTTGTA 59.018 38.462 18.56 0.00 0.00 2.41
3145 14965 7.042925 CCATAATGCCTTCGTAACTAGTTGTAC 60.043 40.741 18.56 8.34 0.00 2.90
3146 14966 5.656213 ATGCCTTCGTAACTAGTTGTACT 57.344 39.130 18.56 0.00 0.00 2.73
3147 14967 6.764308 ATGCCTTCGTAACTAGTTGTACTA 57.236 37.500 18.56 0.00 0.00 1.82
3148 14968 6.764308 TGCCTTCGTAACTAGTTGTACTAT 57.236 37.500 18.56 0.00 29.08 2.12
3149 14969 7.161773 TGCCTTCGTAACTAGTTGTACTATT 57.838 36.000 18.56 0.00 29.08 1.73
3150 14970 7.253422 TGCCTTCGTAACTAGTTGTACTATTC 58.747 38.462 18.56 2.41 29.08 1.75
3151 14971 7.121759 TGCCTTCGTAACTAGTTGTACTATTCT 59.878 37.037 18.56 0.00 29.08 2.40
3152 14972 7.972832 GCCTTCGTAACTAGTTGTACTATTCTT 59.027 37.037 18.56 0.00 29.08 2.52
3153 14973 9.500864 CCTTCGTAACTAGTTGTACTATTCTTC 57.499 37.037 18.56 0.00 29.08 2.87
3161 14981 8.962679 ACTAGTTGTACTATTCTTCTTCTCTGG 58.037 37.037 0.00 0.00 29.08 3.86
3162 14982 7.784470 AGTTGTACTATTCTTCTTCTCTGGT 57.216 36.000 0.00 0.00 0.00 4.00
3163 14983 7.607250 AGTTGTACTATTCTTCTTCTCTGGTG 58.393 38.462 0.00 0.00 0.00 4.17
3164 14984 6.531503 TGTACTATTCTTCTTCTCTGGTGG 57.468 41.667 0.00 0.00 0.00 4.61
3165 14985 4.479786 ACTATTCTTCTTCTCTGGTGGC 57.520 45.455 0.00 0.00 0.00 5.01
3166 14986 2.393271 ATTCTTCTTCTCTGGTGGCG 57.607 50.000 0.00 0.00 0.00 5.69
3167 14987 1.048601 TTCTTCTTCTCTGGTGGCGT 58.951 50.000 0.00 0.00 0.00 5.68
3168 14988 0.318441 TCTTCTTCTCTGGTGGCGTG 59.682 55.000 0.00 0.00 0.00 5.34
3169 14989 0.318441 CTTCTTCTCTGGTGGCGTGA 59.682 55.000 0.00 0.00 0.00 4.35
3170 14990 0.756294 TTCTTCTCTGGTGGCGTGAA 59.244 50.000 0.00 0.00 0.00 3.18
3171 14991 0.756294 TCTTCTCTGGTGGCGTGAAA 59.244 50.000 0.00 0.00 0.00 2.69
3172 14992 1.140052 TCTTCTCTGGTGGCGTGAAAA 59.860 47.619 0.00 0.00 0.00 2.29
3173 14993 2.154462 CTTCTCTGGTGGCGTGAAAAT 58.846 47.619 0.00 0.00 0.00 1.82
3174 14994 1.808411 TCTCTGGTGGCGTGAAAATC 58.192 50.000 0.00 0.00 0.00 2.17
3175 14995 1.071542 TCTCTGGTGGCGTGAAAATCA 59.928 47.619 0.00 0.00 0.00 2.57
3176 14996 2.086869 CTCTGGTGGCGTGAAAATCAT 58.913 47.619 0.00 0.00 0.00 2.45
3177 14997 1.811965 TCTGGTGGCGTGAAAATCATG 59.188 47.619 0.00 0.00 36.50 3.07
3178 14998 1.811965 CTGGTGGCGTGAAAATCATGA 59.188 47.619 0.00 0.00 35.46 3.07
3179 14999 1.539388 TGGTGGCGTGAAAATCATGAC 59.461 47.619 0.00 1.12 41.77 3.06
3180 15000 1.465689 GGTGGCGTGAAAATCATGACG 60.466 52.381 0.00 0.00 44.34 4.35
3182 15002 2.543587 GCGTGAAAATCATGACGCG 58.456 52.632 3.53 3.53 46.54 6.01
3183 15003 0.179225 GCGTGAAAATCATGACGCGT 60.179 50.000 13.85 13.85 46.54 6.01
3184 15004 1.724654 GCGTGAAAATCATGACGCGTT 60.725 47.619 15.53 0.00 46.54 4.84
3185 15005 1.898079 CGTGAAAATCATGACGCGTTG 59.102 47.619 15.53 9.28 35.46 4.10
3186 15006 2.661709 CGTGAAAATCATGACGCGTTGT 60.662 45.455 15.53 1.49 35.46 3.32
3187 15007 2.651703 GTGAAAATCATGACGCGTTGTG 59.348 45.455 15.53 15.79 0.00 3.33
3188 15008 2.545946 TGAAAATCATGACGCGTTGTGA 59.454 40.909 23.55 23.55 0.00 3.58
3189 15009 2.594529 AAATCATGACGCGTTGTGAC 57.405 45.000 23.72 8.59 0.00 3.67
3190 15010 0.796312 AATCATGACGCGTTGTGACC 59.204 50.000 23.72 7.90 0.00 4.02
3191 15011 0.037326 ATCATGACGCGTTGTGACCT 60.037 50.000 23.72 11.00 0.00 3.85
3192 15012 0.943835 TCATGACGCGTTGTGACCTG 60.944 55.000 15.53 3.32 0.00 4.00
3193 15013 2.317609 ATGACGCGTTGTGACCTGC 61.318 57.895 15.53 0.00 0.00 4.85
3194 15014 2.964925 GACGCGTTGTGACCTGCA 60.965 61.111 15.53 0.00 0.00 4.41
3195 15015 2.512745 ACGCGTTGTGACCTGCAA 60.513 55.556 5.58 0.00 0.00 4.08
3196 15016 2.042520 GACGCGTTGTGACCTGCAAA 62.043 55.000 15.53 0.00 0.00 3.68
3197 15017 1.063327 CGCGTTGTGACCTGCAAAA 59.937 52.632 0.00 0.00 0.00 2.44
3198 15018 0.929824 CGCGTTGTGACCTGCAAAAG 60.930 55.000 0.00 0.00 0.00 2.27
3199 15019 0.100503 GCGTTGTGACCTGCAAAAGT 59.899 50.000 0.00 0.00 0.00 2.66
3200 15020 1.332375 GCGTTGTGACCTGCAAAAGTA 59.668 47.619 0.00 0.00 0.00 2.24
3201 15021 2.223386 GCGTTGTGACCTGCAAAAGTAA 60.223 45.455 0.00 0.00 0.00 2.24
3202 15022 3.359654 CGTTGTGACCTGCAAAAGTAAC 58.640 45.455 0.00 0.00 0.00 2.50
3203 15023 3.359654 GTTGTGACCTGCAAAAGTAACG 58.640 45.455 0.00 0.00 0.00 3.18
3204 15024 1.332375 TGTGACCTGCAAAAGTAACGC 59.668 47.619 0.00 0.00 0.00 4.84
3205 15025 0.948678 TGACCTGCAAAAGTAACGCC 59.051 50.000 0.00 0.00 0.00 5.68
3206 15026 0.948678 GACCTGCAAAAGTAACGCCA 59.051 50.000 0.00 0.00 0.00 5.69
3207 15027 0.951558 ACCTGCAAAAGTAACGCCAG 59.048 50.000 0.00 0.00 0.00 4.85
3208 15028 1.234821 CCTGCAAAAGTAACGCCAGA 58.765 50.000 0.00 0.00 0.00 3.86
3209 15029 1.197721 CCTGCAAAAGTAACGCCAGAG 59.802 52.381 0.00 0.00 0.00 3.35
3210 15030 0.591170 TGCAAAAGTAACGCCAGAGC 59.409 50.000 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.677228 CTAACCCAGCCCCAGTGG 59.323 66.667 0.63 0.63 34.52 4.00
2 3 2.044946 GCTAACCCAGCCCCAGTG 60.045 66.667 0.00 0.00 45.23 3.66
41 4075 2.290577 ACAAAGCTTAGGCCCTTCTCAG 60.291 50.000 0.00 0.00 39.73 3.35
103 4141 9.998752 TTATCAAAGGGAAGGGAACAAATATTA 57.001 29.630 0.00 0.00 0.00 0.98
105 4143 7.898636 TGTTATCAAAGGGAAGGGAACAAATAT 59.101 33.333 0.00 0.00 0.00 1.28
107 4145 6.081356 TGTTATCAAAGGGAAGGGAACAAAT 58.919 36.000 0.00 0.00 0.00 2.32
108 4146 5.459505 TGTTATCAAAGGGAAGGGAACAAA 58.540 37.500 0.00 0.00 0.00 2.83
109 4147 5.068215 TGTTATCAAAGGGAAGGGAACAA 57.932 39.130 0.00 0.00 0.00 2.83
110 4148 4.508405 CCTGTTATCAAAGGGAAGGGAACA 60.508 45.833 0.00 0.00 0.00 3.18
111 4149 4.017126 CCTGTTATCAAAGGGAAGGGAAC 58.983 47.826 0.00 0.00 0.00 3.62
112 4150 3.920197 TCCTGTTATCAAAGGGAAGGGAA 59.080 43.478 0.00 0.00 34.08 3.97
113 4151 3.265995 GTCCTGTTATCAAAGGGAAGGGA 59.734 47.826 0.00 0.00 34.08 4.20
114 4152 3.010138 TGTCCTGTTATCAAAGGGAAGGG 59.990 47.826 0.00 0.00 34.08 3.95
115 4153 4.265073 CTGTCCTGTTATCAAAGGGAAGG 58.735 47.826 0.00 0.00 34.08 3.46
116 4154 3.691609 GCTGTCCTGTTATCAAAGGGAAG 59.308 47.826 0.00 0.00 34.08 3.46
140 4178 1.340991 TGTTATTCTTGCAGGGGGCTC 60.341 52.381 0.00 0.00 45.15 4.70
141 4179 0.704076 TGTTATTCTTGCAGGGGGCT 59.296 50.000 0.00 0.00 45.15 5.19
142 4180 1.478105 CTTGTTATTCTTGCAGGGGGC 59.522 52.381 0.00 0.00 45.13 5.80
143 4181 2.102578 CCTTGTTATTCTTGCAGGGGG 58.897 52.381 0.00 0.00 0.00 5.40
144 4182 2.493278 CACCTTGTTATTCTTGCAGGGG 59.507 50.000 0.00 0.00 34.22 4.79
146 4184 5.957842 TTACACCTTGTTATTCTTGCAGG 57.042 39.130 0.00 0.00 0.00 4.85
147 4185 7.202016 TCTTTACACCTTGTTATTCTTGCAG 57.798 36.000 0.00 0.00 0.00 4.41
148 4186 7.575414 TTCTTTACACCTTGTTATTCTTGCA 57.425 32.000 0.00 0.00 0.00 4.08
149 4187 9.129209 GATTTCTTTACACCTTGTTATTCTTGC 57.871 33.333 0.00 0.00 0.00 4.01
152 4190 8.515414 GCAGATTTCTTTACACCTTGTTATTCT 58.485 33.333 0.00 0.00 0.00 2.40
153 4191 7.755373 GGCAGATTTCTTTACACCTTGTTATTC 59.245 37.037 0.00 0.00 0.00 1.75
178 4216 3.066203 AGTTAAACTTGAAGTTGTGCCGG 59.934 43.478 11.83 0.00 38.66 6.13
184 4222 6.912591 CCTGCTGTTAGTTAAACTTGAAGTTG 59.087 38.462 11.83 0.00 38.66 3.16
186 4224 6.120220 ACCTGCTGTTAGTTAAACTTGAAGT 58.880 36.000 0.00 0.00 38.99 3.01
187 4225 6.619801 ACCTGCTGTTAGTTAAACTTGAAG 57.380 37.500 0.00 0.00 38.99 3.02
188 4226 6.204108 GCTACCTGCTGTTAGTTAAACTTGAA 59.796 38.462 0.00 0.00 38.99 2.69
189 4227 5.699458 GCTACCTGCTGTTAGTTAAACTTGA 59.301 40.000 0.00 0.00 38.99 3.02
190 4228 5.928153 GCTACCTGCTGTTAGTTAAACTTG 58.072 41.667 0.00 0.00 38.99 3.16
218 5610 5.532406 TGAAACTCTTGTTCCATTCTCCTTG 59.468 40.000 0.00 0.00 34.96 3.61
237 5629 5.774498 ATTGGACCTTTCACTTCTGAAAC 57.226 39.130 0.00 0.00 40.76 2.78
243 5635 8.624776 CCTGATTTATATTGGACCTTTCACTTC 58.375 37.037 0.00 0.00 0.00 3.01
313 5705 4.089065 CACGCACGGTTAGTTAGTTAGTTC 59.911 45.833 0.00 0.00 0.00 3.01
315 5707 3.568538 CACGCACGGTTAGTTAGTTAGT 58.431 45.455 0.00 0.00 0.00 2.24
316 5708 2.343544 GCACGCACGGTTAGTTAGTTAG 59.656 50.000 0.00 0.00 0.00 2.34
320 5816 1.141645 TTGCACGCACGGTTAGTTAG 58.858 50.000 0.00 0.00 0.00 2.34
329 5825 0.384230 CCACTAAGTTTGCACGCACG 60.384 55.000 0.00 0.00 0.00 5.34
330 5826 0.941542 TCCACTAAGTTTGCACGCAC 59.058 50.000 0.00 0.00 0.00 5.34
331 5827 1.804151 GATCCACTAAGTTTGCACGCA 59.196 47.619 0.00 0.00 0.00 5.24
332 5828 2.076863 AGATCCACTAAGTTTGCACGC 58.923 47.619 0.00 0.00 0.00 5.34
334 5830 5.578727 CACTCTAGATCCACTAAGTTTGCAC 59.421 44.000 0.00 0.00 0.00 4.57
358 5854 0.899717 TGAAACCCAAGATGCCTGCC 60.900 55.000 0.00 0.00 0.00 4.85
359 5855 0.244721 GTGAAACCCAAGATGCCTGC 59.755 55.000 0.00 0.00 0.00 4.85
360 5856 1.542915 CTGTGAAACCCAAGATGCCTG 59.457 52.381 0.00 0.00 34.36 4.85
361 5857 1.915141 CTGTGAAACCCAAGATGCCT 58.085 50.000 0.00 0.00 34.36 4.75
390 5886 6.922957 ACACATATTCGCAACAACTGAAAATT 59.077 30.769 0.00 0.00 0.00 1.82
391 5887 6.446318 ACACATATTCGCAACAACTGAAAAT 58.554 32.000 0.00 0.00 0.00 1.82
392 5888 5.826586 ACACATATTCGCAACAACTGAAAA 58.173 33.333 0.00 0.00 0.00 2.29
394 5890 4.083537 GGACACATATTCGCAACAACTGAA 60.084 41.667 0.00 0.00 0.00 3.02
395 5891 3.435327 GGACACATATTCGCAACAACTGA 59.565 43.478 0.00 0.00 0.00 3.41
398 5894 3.181510 GGAGGACACATATTCGCAACAAC 60.182 47.826 0.00 0.00 0.00 3.32
399 5895 3.006940 GGAGGACACATATTCGCAACAA 58.993 45.455 0.00 0.00 0.00 2.83
400 5896 2.236146 AGGAGGACACATATTCGCAACA 59.764 45.455 0.00 0.00 0.00 3.33
438 6777 1.523032 GGACAAGGTTATCCGGGCG 60.523 63.158 0.00 0.00 39.05 6.13
439 6778 1.153025 GGGACAAGGTTATCCGGGC 60.153 63.158 0.00 0.00 39.05 6.13
440 6779 1.145377 CGGGACAAGGTTATCCGGG 59.855 63.158 0.00 0.00 39.05 5.73
441 6780 0.179092 GACGGGACAAGGTTATCCGG 60.179 60.000 0.00 0.00 44.36 5.14
442 6781 0.179092 GGACGGGACAAGGTTATCCG 60.179 60.000 0.00 0.00 45.42 4.18
443 6782 1.138464 GAGGACGGGACAAGGTTATCC 59.862 57.143 0.00 0.00 0.00 2.59
445 6784 2.108970 GAGAGGACGGGACAAGGTTAT 58.891 52.381 0.00 0.00 0.00 1.89
447 6786 1.192803 GGAGAGGACGGGACAAGGTT 61.193 60.000 0.00 0.00 0.00 3.50
449 6788 1.305381 AGGAGAGGACGGGACAAGG 60.305 63.158 0.00 0.00 0.00 3.61
451 6790 0.114560 AAGAGGAGAGGACGGGACAA 59.885 55.000 0.00 0.00 0.00 3.18
454 6793 0.408309 TCAAAGAGGAGAGGACGGGA 59.592 55.000 0.00 0.00 0.00 5.14
455 6794 1.205893 CTTCAAAGAGGAGAGGACGGG 59.794 57.143 0.00 0.00 0.00 5.28
456 6795 2.171840 TCTTCAAAGAGGAGAGGACGG 58.828 52.381 0.00 0.00 0.00 4.79
457 6796 3.944055 TTCTTCAAAGAGGAGAGGACG 57.056 47.619 0.00 0.00 36.22 4.79
490 6829 0.825010 AAGCAAGGACAGCAGGGTTG 60.825 55.000 0.00 0.00 0.00 3.77
648 10614 1.021390 AGAGATTTGTTGAGCCGCCG 61.021 55.000 0.00 0.00 0.00 6.46
656 10622 5.353678 TGTTTTTGGGCAAAGAGATTTGTTG 59.646 36.000 2.98 0.00 34.56 3.33
661 10627 4.644498 CCATGTTTTTGGGCAAAGAGATT 58.356 39.130 0.00 0.00 32.80 2.40
663 10629 2.224257 GCCATGTTTTTGGGCAAAGAGA 60.224 45.455 0.00 0.00 46.92 3.10
665 10631 2.252976 GCCATGTTTTTGGGCAAAGA 57.747 45.000 0.00 0.00 46.92 2.52
683 10650 2.279582 TCGAGAAGAGGAACGAATGC 57.720 50.000 0.00 0.00 0.00 3.56
684 10651 5.348724 TCAAAATCGAGAAGAGGAACGAATG 59.651 40.000 0.00 0.00 38.22 2.67
685 10652 5.479306 TCAAAATCGAGAAGAGGAACGAAT 58.521 37.500 0.00 0.00 38.22 3.34
686 10653 4.878439 TCAAAATCGAGAAGAGGAACGAA 58.122 39.130 0.00 0.00 38.22 3.85
687 10654 4.486090 CTCAAAATCGAGAAGAGGAACGA 58.514 43.478 0.00 0.00 39.01 3.85
688 10655 3.061429 GCTCAAAATCGAGAAGAGGAACG 59.939 47.826 8.43 0.00 34.79 3.95
689 10656 3.372514 GGCTCAAAATCGAGAAGAGGAAC 59.627 47.826 8.43 0.00 34.79 3.62
690 10657 3.007940 TGGCTCAAAATCGAGAAGAGGAA 59.992 43.478 8.43 0.00 34.79 3.36
691 10658 2.567169 TGGCTCAAAATCGAGAAGAGGA 59.433 45.455 8.43 0.00 34.79 3.71
694 10661 3.368843 CCTCTGGCTCAAAATCGAGAAGA 60.369 47.826 0.00 0.00 34.79 2.87
696 10663 2.355108 CCCTCTGGCTCAAAATCGAGAA 60.355 50.000 0.00 0.00 34.79 2.87
697 10664 1.208052 CCCTCTGGCTCAAAATCGAGA 59.792 52.381 0.00 0.00 34.79 4.04
726 10940 0.888619 TAGAGGCTTGTCACTCACCG 59.111 55.000 0.00 0.00 36.20 4.94
727 10941 2.480416 CGATAGAGGCTTGTCACTCACC 60.480 54.545 0.00 0.00 36.20 4.02
728 10942 2.803451 CGATAGAGGCTTGTCACTCAC 58.197 52.381 0.00 0.00 36.20 3.51
734 10948 1.869767 CAATGGCGATAGAGGCTTGTC 59.130 52.381 0.00 0.00 37.59 3.18
790 11005 4.919793 AGCCGTTAGATGCTATACTAGGA 58.080 43.478 0.00 0.00 35.69 2.94
793 11008 4.153655 CGTGAGCCGTTAGATGCTATACTA 59.846 45.833 0.00 0.00 38.11 1.82
794 11009 3.058155 CGTGAGCCGTTAGATGCTATACT 60.058 47.826 0.00 0.00 38.11 2.12
795 11010 3.235195 CGTGAGCCGTTAGATGCTATAC 58.765 50.000 0.00 0.00 38.11 1.47
796 11011 3.554259 CGTGAGCCGTTAGATGCTATA 57.446 47.619 0.00 0.00 38.11 1.31
797 11012 2.423926 CGTGAGCCGTTAGATGCTAT 57.576 50.000 0.00 0.00 38.11 2.97
850 11066 2.602257 TCCTAATCGCTGATGTGGTG 57.398 50.000 8.62 0.00 0.00 4.17
851 11067 3.627395 TTTCCTAATCGCTGATGTGGT 57.373 42.857 8.62 0.00 0.00 4.16
874 11090 3.432592 CCGGTTGTTGTTTTTCGGTTTTT 59.567 39.130 0.00 0.00 33.63 1.94
875 11091 2.994578 CCGGTTGTTGTTTTTCGGTTTT 59.005 40.909 0.00 0.00 33.63 2.43
877 11093 1.817447 TCCGGTTGTTGTTTTTCGGTT 59.183 42.857 0.00 0.00 38.70 4.44
879 11095 2.785713 ATCCGGTTGTTGTTTTTCGG 57.214 45.000 0.00 0.00 38.92 4.30
880 11096 2.217620 GCAATCCGGTTGTTGTTTTTCG 59.782 45.455 15.22 0.00 40.07 3.46
881 11097 2.542178 GGCAATCCGGTTGTTGTTTTTC 59.458 45.455 15.22 2.51 40.07 2.29
887 11104 1.883021 GGAGGCAATCCGGTTGTTG 59.117 57.895 15.22 13.16 38.67 3.33
910 11127 2.933287 TGGTGGTGGCCCTACTGG 60.933 66.667 0.00 0.00 37.09 4.00
911 11128 2.351276 GTGGTGGTGGCCCTACTG 59.649 66.667 0.00 0.00 0.00 2.74
912 11129 2.933834 GGTGGTGGTGGCCCTACT 60.934 66.667 0.00 0.00 0.00 2.57
913 11130 3.253838 TGGTGGTGGTGGCCCTAC 61.254 66.667 0.00 0.00 0.00 3.18
914 11131 3.253838 GTGGTGGTGGTGGCCCTA 61.254 66.667 0.00 0.00 0.00 3.53
916 11133 4.531426 TTGTGGTGGTGGTGGCCC 62.531 66.667 0.00 0.00 0.00 5.80
921 11140 1.822186 GAGCGTTTGTGGTGGTGGT 60.822 57.895 0.00 0.00 0.00 4.16
960 11183 3.058155 CGGTTATCCACTCCACTATCGAG 60.058 52.174 0.00 0.00 0.00 4.04
961 11184 2.882761 CGGTTATCCACTCCACTATCGA 59.117 50.000 0.00 0.00 0.00 3.59
962 11185 2.607282 GCGGTTATCCACTCCACTATCG 60.607 54.545 0.00 0.00 0.00 2.92
963 11186 2.364324 TGCGGTTATCCACTCCACTATC 59.636 50.000 0.00 0.00 0.00 2.08
964 11187 2.394632 TGCGGTTATCCACTCCACTAT 58.605 47.619 0.00 0.00 0.00 2.12
1515 12077 2.930562 GCCTGGAGGGTGTGGAGT 60.931 66.667 0.00 0.00 37.43 3.85
1832 12394 0.175989 GTTAGCCTTCTCCTGGTCGG 59.824 60.000 0.00 0.00 0.00 4.79
1976 12540 2.202797 CGTCGAGCACCCAGATGG 60.203 66.667 0.00 0.00 41.37 3.51
1992 12556 1.966451 GAACACCTTGGCCAGTCCG 60.966 63.158 5.11 0.00 37.80 4.79
2112 12677 2.240500 GCCATAGCTCGGCGTCTTG 61.241 63.158 11.07 6.89 40.35 3.02
2160 12725 2.158755 CGCCATTCCTTCCCTTATCACT 60.159 50.000 0.00 0.00 0.00 3.41
2199 12764 4.469657 CCTAGAGCTAGAAGATGGTCTGT 58.530 47.826 6.11 0.00 40.61 3.41
2215 12780 0.908198 ACAAGCTGGAAGGCCTAGAG 59.092 55.000 5.16 3.07 34.31 2.43
2244 12817 3.077088 ACTTACCTCCCTACACTCTTGGA 59.923 47.826 0.00 0.00 0.00 3.53
2365 12962 4.669453 GCGCTACTCTGCTTTTTAAACTCC 60.669 45.833 0.00 0.00 0.00 3.85
2386 12983 0.240678 TGCTTTGGTGTTGCTATGCG 59.759 50.000 0.00 0.00 0.00 4.73
2387 12984 1.541147 TCTGCTTTGGTGTTGCTATGC 59.459 47.619 0.00 0.00 0.00 3.14
2388 12985 2.816087 ACTCTGCTTTGGTGTTGCTATG 59.184 45.455 0.00 0.00 0.00 2.23
2390 12987 2.638480 ACTCTGCTTTGGTGTTGCTA 57.362 45.000 0.00 0.00 0.00 3.49
2391 12988 2.498167 CTACTCTGCTTTGGTGTTGCT 58.502 47.619 0.00 0.00 0.00 3.91
2392 12989 1.068954 GCTACTCTGCTTTGGTGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
2393 12990 2.225019 CAGCTACTCTGCTTTGGTGTTG 59.775 50.000 0.00 0.00 41.98 3.33
2394 12991 2.498167 CAGCTACTCTGCTTTGGTGTT 58.502 47.619 0.00 0.00 41.98 3.32
2404 13001 0.522286 CACGACTCGCAGCTACTCTG 60.522 60.000 0.00 0.00 45.62 3.35
2405 13002 0.673956 TCACGACTCGCAGCTACTCT 60.674 55.000 0.00 0.00 0.00 3.24
2410 13007 1.796190 TTCAGTCACGACTCGCAGCT 61.796 55.000 0.00 0.00 40.20 4.24
2434 13162 1.149987 ATTTGCATGTTGCTTTGGCG 58.850 45.000 0.75 0.00 45.31 5.69
2460 13188 1.654954 GATGGAGCCTGCAACTGCTG 61.655 60.000 9.53 2.36 42.66 4.41
2465 13193 1.022735 CAGATGATGGAGCCTGCAAC 58.977 55.000 0.00 0.00 0.00 4.17
2498 13226 8.378565 TCTGGAACAAATTCTTCTACAGAGATT 58.621 33.333 0.00 0.00 38.70 2.40
2510 13238 8.814038 AAGCATACTTATCTGGAACAAATTCT 57.186 30.769 0.00 0.00 32.83 2.40
2511 13239 8.677300 TGAAGCATACTTATCTGGAACAAATTC 58.323 33.333 0.00 0.00 34.55 2.17
2513 13241 8.579850 TTGAAGCATACTTATCTGGAACAAAT 57.420 30.769 0.00 0.00 34.55 2.32
2538 13266 8.950210 CAGAGAACTGTGATGTGGTAAATAATT 58.050 33.333 0.00 0.00 39.11 1.40
2568 13296 0.097150 GAATGCGAAAGAACGGCCTC 59.903 55.000 0.00 0.00 0.00 4.70
2569 13297 0.321653 AGAATGCGAAAGAACGGCCT 60.322 50.000 0.00 0.00 0.00 5.19
2571 13299 0.796312 TCAGAATGCGAAAGAACGGC 59.204 50.000 0.00 0.00 34.76 5.68
2572 13300 3.536158 TTTCAGAATGCGAAAGAACGG 57.464 42.857 0.00 0.00 34.76 4.44
2573 13301 4.732923 TGTTTTTCAGAATGCGAAAGAACG 59.267 37.500 0.00 0.00 34.07 3.95
2574 13302 6.753897 ATGTTTTTCAGAATGCGAAAGAAC 57.246 33.333 0.00 0.00 34.07 3.01
2576 13304 6.502652 TCAATGTTTTTCAGAATGCGAAAGA 58.497 32.000 0.00 0.00 34.07 2.52
2577 13305 6.129009 CCTCAATGTTTTTCAGAATGCGAAAG 60.129 38.462 0.00 0.00 34.07 2.62
2579 13307 5.221880 CCTCAATGTTTTTCAGAATGCGAA 58.778 37.500 0.00 0.00 34.76 4.70
2581 13309 3.365820 GCCTCAATGTTTTTCAGAATGCG 59.634 43.478 0.00 0.00 34.76 4.73
2582 13310 4.309099 TGCCTCAATGTTTTTCAGAATGC 58.691 39.130 0.00 0.00 34.76 3.56
2586 13314 4.321452 GCATCTGCCTCAATGTTTTTCAGA 60.321 41.667 0.00 0.00 34.21 3.27
2589 13317 3.916761 TGCATCTGCCTCAATGTTTTTC 58.083 40.909 0.00 0.00 41.18 2.29
2592 14408 2.522185 ACTGCATCTGCCTCAATGTTT 58.478 42.857 0.00 0.00 41.18 2.83
2601 14417 2.704572 ACTTCTGTTACTGCATCTGCC 58.295 47.619 0.00 0.00 41.18 4.85
2654 14470 0.322277 AGATCACCAGCAGCAACAGG 60.322 55.000 0.00 0.00 0.00 4.00
2658 14475 1.625315 AGTACAGATCACCAGCAGCAA 59.375 47.619 0.00 0.00 0.00 3.91
2660 14477 1.205655 TGAGTACAGATCACCAGCAGC 59.794 52.381 0.00 0.00 0.00 5.25
2666 14483 4.792521 ACAAGAGTGAGTACAGATCACC 57.207 45.455 9.46 3.26 46.68 4.02
2677 14494 5.289595 TGCAGTAACTGTTACAAGAGTGAG 58.710 41.667 27.12 10.86 38.60 3.51
2685 14502 2.549992 CCTGGCTGCAGTAACTGTTACA 60.550 50.000 27.12 10.41 38.60 2.41
2782 14600 2.038689 TCGGTACCAGTTTGGCATGTTA 59.961 45.455 13.54 0.00 42.67 2.41
2802 14620 5.338365 CCTAGCTTGAATGACAGCAATTTC 58.662 41.667 0.00 0.00 0.00 2.17
2827 14645 1.070758 TGGGTGAAGACAACTGAGAGC 59.929 52.381 0.00 0.00 33.68 4.09
2830 14648 1.202533 ACGTGGGTGAAGACAACTGAG 60.203 52.381 0.00 0.00 33.68 3.35
2832 14650 1.202533 AGACGTGGGTGAAGACAACTG 60.203 52.381 0.00 0.00 33.68 3.16
2833 14651 1.068741 GAGACGTGGGTGAAGACAACT 59.931 52.381 0.00 0.00 33.68 3.16
2834 14652 1.202486 TGAGACGTGGGTGAAGACAAC 60.202 52.381 0.00 0.00 0.00 3.32
2841 14659 1.338107 ATCAAGTGAGACGTGGGTGA 58.662 50.000 0.00 0.00 0.00 4.02
2896 14716 1.063469 CAGTTCCGCAACAAAGTTCGT 59.937 47.619 0.00 0.00 34.60 3.85
2932 14752 2.031870 GTTGTTCAGTCTTTTGGGGCT 58.968 47.619 0.00 0.00 0.00 5.19
2937 14757 4.974275 CAGCTCATGTTGTTCAGTCTTTTG 59.026 41.667 0.00 0.00 0.00 2.44
2940 14760 4.077300 TCAGCTCATGTTGTTCAGTCTT 57.923 40.909 0.00 0.00 0.00 3.01
2942 14762 6.674694 ATTATCAGCTCATGTTGTTCAGTC 57.325 37.500 0.00 0.00 0.00 3.51
2943 14763 6.432162 ACAATTATCAGCTCATGTTGTTCAGT 59.568 34.615 0.00 0.00 0.00 3.41
2944 14764 6.849502 ACAATTATCAGCTCATGTTGTTCAG 58.150 36.000 0.00 0.00 0.00 3.02
3068 14888 1.561542 CCCTTTCAGCATACACCCTCT 59.438 52.381 0.00 0.00 0.00 3.69
3069 14889 2.019156 GCCCTTTCAGCATACACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
3070 14890 0.034089 GCCCTTTCAGCATACACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3071 14891 1.376609 CGCCCTTTCAGCATACACCC 61.377 60.000 0.00 0.00 0.00 4.61
3072 14892 0.392461 TCGCCCTTTCAGCATACACC 60.392 55.000 0.00 0.00 0.00 4.16
3073 14893 0.727398 GTCGCCCTTTCAGCATACAC 59.273 55.000 0.00 0.00 0.00 2.90
3074 14894 0.323302 TGTCGCCCTTTCAGCATACA 59.677 50.000 0.00 0.00 0.00 2.29
3075 14895 1.331756 CATGTCGCCCTTTCAGCATAC 59.668 52.381 0.00 0.00 0.00 2.39
3076 14896 1.209261 TCATGTCGCCCTTTCAGCATA 59.791 47.619 0.00 0.00 0.00 3.14
3077 14897 0.035152 TCATGTCGCCCTTTCAGCAT 60.035 50.000 0.00 0.00 0.00 3.79
3078 14898 0.035152 ATCATGTCGCCCTTTCAGCA 60.035 50.000 0.00 0.00 0.00 4.41
3079 14899 1.599542 GTATCATGTCGCCCTTTCAGC 59.400 52.381 0.00 0.00 0.00 4.26
3080 14900 2.609459 GTGTATCATGTCGCCCTTTCAG 59.391 50.000 0.00 0.00 0.00 3.02
3081 14901 2.027653 TGTGTATCATGTCGCCCTTTCA 60.028 45.455 0.00 0.00 0.00 2.69
3082 14902 2.627945 TGTGTATCATGTCGCCCTTTC 58.372 47.619 0.00 0.00 0.00 2.62
3083 14903 2.779755 TGTGTATCATGTCGCCCTTT 57.220 45.000 0.00 0.00 0.00 3.11
3084 14904 2.564771 CATGTGTATCATGTCGCCCTT 58.435 47.619 0.00 0.00 46.18 3.95
3085 14905 2.245159 CATGTGTATCATGTCGCCCT 57.755 50.000 0.00 0.00 46.18 5.19
3093 14913 6.999871 TCTTATGGTTGATGCATGTGTATCAT 59.000 34.615 2.46 0.99 44.45 2.45
3094 14914 6.260714 GTCTTATGGTTGATGCATGTGTATCA 59.739 38.462 2.46 9.30 43.64 2.15
3095 14915 6.293626 GGTCTTATGGTTGATGCATGTGTATC 60.294 42.308 2.46 4.40 37.61 2.24
3096 14916 5.532406 GGTCTTATGGTTGATGCATGTGTAT 59.468 40.000 2.46 0.00 0.00 2.29
3097 14917 4.881273 GGTCTTATGGTTGATGCATGTGTA 59.119 41.667 2.46 0.00 0.00 2.90
3098 14918 3.696051 GGTCTTATGGTTGATGCATGTGT 59.304 43.478 2.46 0.00 0.00 3.72
3099 14919 3.695556 TGGTCTTATGGTTGATGCATGTG 59.304 43.478 2.46 0.00 0.00 3.21
3100 14920 3.966979 TGGTCTTATGGTTGATGCATGT 58.033 40.909 2.46 0.00 0.00 3.21
3101 14921 6.638096 TTATGGTCTTATGGTTGATGCATG 57.362 37.500 2.46 0.00 0.00 4.06
3102 14922 6.294899 GCATTATGGTCTTATGGTTGATGCAT 60.295 38.462 0.00 0.00 36.92 3.96
3103 14923 5.009911 GCATTATGGTCTTATGGTTGATGCA 59.990 40.000 0.00 0.00 36.92 3.96
3104 14924 5.464168 GCATTATGGTCTTATGGTTGATGC 58.536 41.667 0.00 0.00 0.00 3.91
3105 14925 5.771666 AGGCATTATGGTCTTATGGTTGATG 59.228 40.000 0.00 0.00 0.00 3.07
3106 14926 5.957132 AGGCATTATGGTCTTATGGTTGAT 58.043 37.500 0.00 0.00 0.00 2.57
3107 14927 5.387113 AGGCATTATGGTCTTATGGTTGA 57.613 39.130 0.00 0.00 0.00 3.18
3108 14928 5.277974 CGAAGGCATTATGGTCTTATGGTTG 60.278 44.000 0.00 0.00 31.73 3.77
3109 14929 4.821805 CGAAGGCATTATGGTCTTATGGTT 59.178 41.667 0.00 0.00 31.73 3.67
3110 14930 4.141482 ACGAAGGCATTATGGTCTTATGGT 60.141 41.667 0.00 0.00 31.73 3.55
3111 14931 4.389374 ACGAAGGCATTATGGTCTTATGG 58.611 43.478 0.00 0.00 31.73 2.74
3112 14932 6.706270 AGTTACGAAGGCATTATGGTCTTATG 59.294 38.462 0.00 0.00 31.73 1.90
3113 14933 6.827727 AGTTACGAAGGCATTATGGTCTTAT 58.172 36.000 0.00 0.00 31.73 1.73
3114 14934 6.229936 AGTTACGAAGGCATTATGGTCTTA 57.770 37.500 0.00 0.00 31.73 2.10
3115 14935 5.099042 AGTTACGAAGGCATTATGGTCTT 57.901 39.130 0.00 0.00 34.92 3.01
3116 14936 4.755266 AGTTACGAAGGCATTATGGTCT 57.245 40.909 0.00 0.00 0.00 3.85
3117 14937 5.598769 ACTAGTTACGAAGGCATTATGGTC 58.401 41.667 0.00 0.00 0.00 4.02
3118 14938 5.609533 ACTAGTTACGAAGGCATTATGGT 57.390 39.130 0.00 0.00 0.00 3.55
3119 14939 5.815740 ACAACTAGTTACGAAGGCATTATGG 59.184 40.000 8.04 0.00 0.00 2.74
3120 14940 6.903883 ACAACTAGTTACGAAGGCATTATG 57.096 37.500 8.04 0.00 0.00 1.90
3121 14941 7.779073 AGTACAACTAGTTACGAAGGCATTAT 58.221 34.615 8.04 0.00 0.00 1.28
3122 14942 7.161773 AGTACAACTAGTTACGAAGGCATTA 57.838 36.000 8.04 0.00 0.00 1.90
3123 14943 6.034161 AGTACAACTAGTTACGAAGGCATT 57.966 37.500 8.04 0.00 0.00 3.56
3124 14944 5.656213 AGTACAACTAGTTACGAAGGCAT 57.344 39.130 8.04 0.00 0.00 4.40
3125 14945 6.764308 ATAGTACAACTAGTTACGAAGGCA 57.236 37.500 8.04 0.00 33.66 4.75
3126 14946 7.479150 AGAATAGTACAACTAGTTACGAAGGC 58.521 38.462 8.04 0.00 33.66 4.35
3127 14947 9.500864 GAAGAATAGTACAACTAGTTACGAAGG 57.499 37.037 8.04 0.00 33.66 3.46
3135 14955 8.962679 CCAGAGAAGAAGAATAGTACAACTAGT 58.037 37.037 0.00 0.00 33.66 2.57
3136 14956 8.962679 ACCAGAGAAGAAGAATAGTACAACTAG 58.037 37.037 0.00 0.00 33.66 2.57
3137 14957 8.740906 CACCAGAGAAGAAGAATAGTACAACTA 58.259 37.037 0.00 0.00 34.82 2.24
3138 14958 7.310113 CCACCAGAGAAGAAGAATAGTACAACT 60.310 40.741 0.00 0.00 0.00 3.16
3139 14959 6.814146 CCACCAGAGAAGAAGAATAGTACAAC 59.186 42.308 0.00 0.00 0.00 3.32
3140 14960 6.574465 GCCACCAGAGAAGAAGAATAGTACAA 60.574 42.308 0.00 0.00 0.00 2.41
3141 14961 5.105310 GCCACCAGAGAAGAAGAATAGTACA 60.105 44.000 0.00 0.00 0.00 2.90
3142 14962 5.353111 GCCACCAGAGAAGAAGAATAGTAC 58.647 45.833 0.00 0.00 0.00 2.73
3143 14963 4.098044 CGCCACCAGAGAAGAAGAATAGTA 59.902 45.833 0.00 0.00 0.00 1.82
3144 14964 3.118956 CGCCACCAGAGAAGAAGAATAGT 60.119 47.826 0.00 0.00 0.00 2.12
3145 14965 3.118956 ACGCCACCAGAGAAGAAGAATAG 60.119 47.826 0.00 0.00 0.00 1.73
3146 14966 2.832129 ACGCCACCAGAGAAGAAGAATA 59.168 45.455 0.00 0.00 0.00 1.75
3147 14967 1.625818 ACGCCACCAGAGAAGAAGAAT 59.374 47.619 0.00 0.00 0.00 2.40
3148 14968 1.048601 ACGCCACCAGAGAAGAAGAA 58.951 50.000 0.00 0.00 0.00 2.52
3149 14969 0.318441 CACGCCACCAGAGAAGAAGA 59.682 55.000 0.00 0.00 0.00 2.87
3150 14970 0.318441 TCACGCCACCAGAGAAGAAG 59.682 55.000 0.00 0.00 0.00 2.85
3151 14971 0.756294 TTCACGCCACCAGAGAAGAA 59.244 50.000 0.00 0.00 0.00 2.52
3152 14972 0.756294 TTTCACGCCACCAGAGAAGA 59.244 50.000 0.00 0.00 0.00 2.87
3153 14973 1.593196 TTTTCACGCCACCAGAGAAG 58.407 50.000 0.00 0.00 0.00 2.85
3154 14974 2.151202 GATTTTCACGCCACCAGAGAA 58.849 47.619 0.00 0.00 0.00 2.87
3155 14975 1.071542 TGATTTTCACGCCACCAGAGA 59.928 47.619 0.00 0.00 0.00 3.10
3156 14976 1.522668 TGATTTTCACGCCACCAGAG 58.477 50.000 0.00 0.00 0.00 3.35
3157 14977 1.811965 CATGATTTTCACGCCACCAGA 59.188 47.619 0.00 0.00 0.00 3.86
3158 14978 1.811965 TCATGATTTTCACGCCACCAG 59.188 47.619 0.00 0.00 0.00 4.00
3159 14979 1.539388 GTCATGATTTTCACGCCACCA 59.461 47.619 0.00 0.00 0.00 4.17
3160 14980 1.465689 CGTCATGATTTTCACGCCACC 60.466 52.381 0.00 0.00 0.00 4.61
3161 14981 1.882198 CGTCATGATTTTCACGCCAC 58.118 50.000 0.00 0.00 0.00 5.01
3165 14985 1.898079 CAACGCGTCATGATTTTCACG 59.102 47.619 14.44 0.00 35.32 4.35
3166 14986 2.651703 CACAACGCGTCATGATTTTCAC 59.348 45.455 14.44 0.00 0.00 3.18
3167 14987 2.545946 TCACAACGCGTCATGATTTTCA 59.454 40.909 14.44 0.00 0.00 2.69
3168 14988 2.902484 GTCACAACGCGTCATGATTTTC 59.098 45.455 23.28 10.64 0.00 2.29
3169 14989 2.350388 GGTCACAACGCGTCATGATTTT 60.350 45.455 23.28 0.00 0.00 1.82
3170 14990 1.196808 GGTCACAACGCGTCATGATTT 59.803 47.619 23.28 0.00 0.00 2.17
3171 14991 0.796312 GGTCACAACGCGTCATGATT 59.204 50.000 23.28 0.75 0.00 2.57
3172 14992 0.037326 AGGTCACAACGCGTCATGAT 60.037 50.000 23.28 9.94 0.00 2.45
3173 14993 0.943835 CAGGTCACAACGCGTCATGA 60.944 55.000 14.44 16.97 0.00 3.07
3174 14994 1.492873 CAGGTCACAACGCGTCATG 59.507 57.895 14.44 14.62 0.00 3.07
3175 14995 2.317609 GCAGGTCACAACGCGTCAT 61.318 57.895 14.44 0.00 0.00 3.06
3176 14996 2.964925 GCAGGTCACAACGCGTCA 60.965 61.111 14.44 0.00 0.00 4.35
3177 14997 2.042520 TTTGCAGGTCACAACGCGTC 62.043 55.000 14.44 0.00 0.00 5.19
3178 14998 1.649390 TTTTGCAGGTCACAACGCGT 61.649 50.000 5.58 5.58 0.00 6.01
3179 14999 0.929824 CTTTTGCAGGTCACAACGCG 60.930 55.000 3.53 3.53 0.00 6.01
3180 15000 0.100503 ACTTTTGCAGGTCACAACGC 59.899 50.000 0.00 0.00 0.00 4.84
3181 15001 3.359654 GTTACTTTTGCAGGTCACAACG 58.640 45.455 0.00 0.00 0.00 4.10
3182 15002 3.359654 CGTTACTTTTGCAGGTCACAAC 58.640 45.455 0.00 0.00 0.00 3.32
3183 15003 2.223386 GCGTTACTTTTGCAGGTCACAA 60.223 45.455 0.00 0.00 0.00 3.33
3184 15004 1.332375 GCGTTACTTTTGCAGGTCACA 59.668 47.619 0.00 0.00 0.00 3.58
3185 15005 1.334689 GGCGTTACTTTTGCAGGTCAC 60.335 52.381 0.00 0.00 0.00 3.67
3186 15006 0.948678 GGCGTTACTTTTGCAGGTCA 59.051 50.000 0.00 0.00 0.00 4.02
3187 15007 0.948678 TGGCGTTACTTTTGCAGGTC 59.051 50.000 0.00 0.00 0.00 3.85
3188 15008 0.951558 CTGGCGTTACTTTTGCAGGT 59.048 50.000 0.00 0.00 0.00 4.00
3189 15009 1.197721 CTCTGGCGTTACTTTTGCAGG 59.802 52.381 0.00 0.00 0.00 4.85
3190 15010 1.400242 GCTCTGGCGTTACTTTTGCAG 60.400 52.381 0.00 0.00 0.00 4.41
3191 15011 0.591170 GCTCTGGCGTTACTTTTGCA 59.409 50.000 0.00 0.00 0.00 4.08
3192 15012 3.384702 GCTCTGGCGTTACTTTTGC 57.615 52.632 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.