Multiple sequence alignment - TraesCS6D01G387200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G387200 chr6D 100.000 2963 0 0 1 2963 464280837 464277875 0.000000e+00 5472.0
1 TraesCS6D01G387200 chr6D 98.064 2686 49 3 281 2963 296678438 296681123 0.000000e+00 4669.0
2 TraesCS6D01G387200 chr6D 89.600 1673 151 12 1296 2963 471971626 471969972 0.000000e+00 2104.0
3 TraesCS6D01G387200 chr6D 89.533 1672 155 9 1296 2963 472021807 472020152 0.000000e+00 2100.0
4 TraesCS6D01G387200 chr5A 97.055 2377 66 4 281 2654 669851801 669854176 0.000000e+00 3999.0
5 TraesCS6D01G387200 chr5B 93.147 2685 162 14 284 2963 444755546 444758213 0.000000e+00 3919.0
6 TraesCS6D01G387200 chr5B 86.111 504 64 5 537 1035 521389777 521390279 3.360000e-149 538.0
7 TraesCS6D01G387200 chr5B 88.571 105 12 0 123 227 467093429 467093325 8.620000e-26 128.0
8 TraesCS6D01G387200 chr6B 92.849 2685 165 17 284 2963 276764565 276767227 0.000000e+00 3869.0
9 TraesCS6D01G387200 chr5D 97.923 2215 43 3 752 2963 482799850 482802064 0.000000e+00 3832.0
10 TraesCS6D01G387200 chr5D 90.882 1009 85 5 282 1288 273104015 273103012 0.000000e+00 1347.0
11 TraesCS6D01G387200 chr5D 89.028 957 86 7 301 1252 523456770 523457712 0.000000e+00 1168.0
12 TraesCS6D01G387200 chr4D 98.351 1941 30 2 1025 2963 486782678 486780738 0.000000e+00 3406.0
13 TraesCS6D01G387200 chr3B 95.600 1682 67 6 1286 2963 485405651 485403973 0.000000e+00 2689.0
14 TraesCS6D01G387200 chr3B 95.545 1010 43 1 281 1288 485406814 485405805 0.000000e+00 1615.0
15 TraesCS6D01G387200 chr3B 84.872 390 57 2 282 670 562560237 562559849 2.770000e-105 392.0
16 TraesCS6D01G387200 chr7D 97.657 1451 26 3 1521 2963 101764726 101766176 0.000000e+00 2484.0
17 TraesCS6D01G387200 chr1D 84.298 242 22 10 1 227 99688636 99688876 3.840000e-54 222.0
18 TraesCS6D01G387200 chr1D 87.387 111 14 0 117 227 469062086 469062196 8.620000e-26 128.0
19 TraesCS6D01G387200 chr7A 84.066 182 15 4 114 282 541371922 541371742 2.360000e-36 163.0
20 TraesCS6D01G387200 chr4A 82.270 141 9 4 124 264 23436185 23436309 1.120000e-19 108.0
21 TraesCS6D01G387200 chr7B 85.106 94 13 1 135 227 489417458 489417551 8.740000e-16 95.3
22 TraesCS6D01G387200 chr2A 94.828 58 3 0 165 222 721868218 721868275 1.130000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G387200 chr6D 464277875 464280837 2962 True 5472 5472 100.0000 1 2963 1 chr6D.!!$R1 2962
1 TraesCS6D01G387200 chr6D 296678438 296681123 2685 False 4669 4669 98.0640 281 2963 1 chr6D.!!$F1 2682
2 TraesCS6D01G387200 chr6D 471969972 471971626 1654 True 2104 2104 89.6000 1296 2963 1 chr6D.!!$R2 1667
3 TraesCS6D01G387200 chr6D 472020152 472021807 1655 True 2100 2100 89.5330 1296 2963 1 chr6D.!!$R3 1667
4 TraesCS6D01G387200 chr5A 669851801 669854176 2375 False 3999 3999 97.0550 281 2654 1 chr5A.!!$F1 2373
5 TraesCS6D01G387200 chr5B 444755546 444758213 2667 False 3919 3919 93.1470 284 2963 1 chr5B.!!$F1 2679
6 TraesCS6D01G387200 chr5B 521389777 521390279 502 False 538 538 86.1110 537 1035 1 chr5B.!!$F2 498
7 TraesCS6D01G387200 chr6B 276764565 276767227 2662 False 3869 3869 92.8490 284 2963 1 chr6B.!!$F1 2679
8 TraesCS6D01G387200 chr5D 482799850 482802064 2214 False 3832 3832 97.9230 752 2963 1 chr5D.!!$F1 2211
9 TraesCS6D01G387200 chr5D 273103012 273104015 1003 True 1347 1347 90.8820 282 1288 1 chr5D.!!$R1 1006
10 TraesCS6D01G387200 chr5D 523456770 523457712 942 False 1168 1168 89.0280 301 1252 1 chr5D.!!$F2 951
11 TraesCS6D01G387200 chr4D 486780738 486782678 1940 True 3406 3406 98.3510 1025 2963 1 chr4D.!!$R1 1938
12 TraesCS6D01G387200 chr3B 485403973 485406814 2841 True 2152 2689 95.5725 281 2963 2 chr3B.!!$R2 2682
13 TraesCS6D01G387200 chr7D 101764726 101766176 1450 False 2484 2484 97.6570 1521 2963 1 chr7D.!!$F1 1442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.031994 GCTGACTAGCTGCTAGGAGC 59.968 60.0 33.16 31.69 46.57 4.7 F
240 241 0.469144 ACTAGCTGCTAGGAGCTCCC 60.469 60.0 38.03 14.74 46.85 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 1680 0.957395 CGCTGGCCACATCTTGAACT 60.957 55.000 0.0 0.0 0.00 3.01 R
2174 2343 2.624264 GCAAGCGTCGTTGTCGTT 59.376 55.556 0.0 0.0 38.33 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.411904 TGAACATTTTGCAAATCCGCC 58.588 42.857 13.65 3.80 0.00 6.13
21 22 2.224137 TGAACATTTTGCAAATCCGCCA 60.224 40.909 13.65 6.37 0.00 5.69
22 23 2.540265 ACATTTTGCAAATCCGCCAA 57.460 40.000 13.65 0.00 0.00 4.52
23 24 3.056588 ACATTTTGCAAATCCGCCAAT 57.943 38.095 13.65 0.00 0.00 3.16
24 25 4.199432 ACATTTTGCAAATCCGCCAATA 57.801 36.364 13.65 0.00 0.00 1.90
25 26 4.768583 ACATTTTGCAAATCCGCCAATAT 58.231 34.783 13.65 0.00 0.00 1.28
26 27 5.184711 ACATTTTGCAAATCCGCCAATATT 58.815 33.333 13.65 0.00 0.00 1.28
27 28 5.647225 ACATTTTGCAAATCCGCCAATATTT 59.353 32.000 13.65 0.00 0.00 1.40
28 29 6.150809 ACATTTTGCAAATCCGCCAATATTTT 59.849 30.769 13.65 0.00 0.00 1.82
29 30 6.566197 TTTTGCAAATCCGCCAATATTTTT 57.434 29.167 13.65 0.00 0.00 1.94
56 57 9.964354 TCAAATCCATGAGATCTTCTAAAAAGA 57.036 29.630 0.00 0.00 32.47 2.52
61 62 9.388506 TCCATGAGATCTTCTAAAAAGATGAAC 57.611 33.333 5.08 0.00 37.14 3.18
62 63 9.393512 CCATGAGATCTTCTAAAAAGATGAACT 57.606 33.333 5.08 0.44 37.14 3.01
79 80 9.450807 AAGATGAACTATTTTTGAAAGTCAACG 57.549 29.630 0.00 0.00 35.89 4.10
80 81 8.076178 AGATGAACTATTTTTGAAAGTCAACGG 58.924 33.333 0.00 0.00 35.89 4.44
81 82 7.090953 TGAACTATTTTTGAAAGTCAACGGT 57.909 32.000 0.00 0.00 35.89 4.83
82 83 7.190871 TGAACTATTTTTGAAAGTCAACGGTC 58.809 34.615 0.00 0.00 35.89 4.79
83 84 6.687081 ACTATTTTTGAAAGTCAACGGTCA 57.313 33.333 0.00 0.00 35.89 4.02
84 85 7.090953 ACTATTTTTGAAAGTCAACGGTCAA 57.909 32.000 0.00 0.00 35.89 3.18
85 86 7.540299 ACTATTTTTGAAAGTCAACGGTCAAA 58.460 30.769 9.03 9.03 35.89 2.69
86 87 6.885735 ATTTTTGAAAGTCAACGGTCAAAG 57.114 33.333 11.49 0.00 40.14 2.77
87 88 4.364415 TTTGAAAGTCAACGGTCAAAGG 57.636 40.909 9.03 0.00 35.89 3.11
88 89 2.993937 TGAAAGTCAACGGTCAAAGGT 58.006 42.857 0.00 0.00 0.00 3.50
89 90 2.940410 TGAAAGTCAACGGTCAAAGGTC 59.060 45.455 0.00 0.00 0.00 3.85
90 91 2.702592 AAGTCAACGGTCAAAGGTCA 57.297 45.000 0.00 0.00 0.00 4.02
91 92 2.702592 AGTCAACGGTCAAAGGTCAA 57.297 45.000 0.00 0.00 0.00 3.18
92 93 2.993937 AGTCAACGGTCAAAGGTCAAA 58.006 42.857 0.00 0.00 0.00 2.69
93 94 2.681344 AGTCAACGGTCAAAGGTCAAAC 59.319 45.455 0.00 0.00 0.00 2.93
94 95 2.420722 GTCAACGGTCAAAGGTCAAACA 59.579 45.455 0.00 0.00 0.00 2.83
95 96 3.066203 GTCAACGGTCAAAGGTCAAACAT 59.934 43.478 0.00 0.00 0.00 2.71
96 97 3.066064 TCAACGGTCAAAGGTCAAACATG 59.934 43.478 0.00 0.00 0.00 3.21
97 98 2.650322 ACGGTCAAAGGTCAAACATGT 58.350 42.857 0.00 0.00 0.00 3.21
98 99 2.616842 ACGGTCAAAGGTCAAACATGTC 59.383 45.455 0.00 0.00 0.00 3.06
99 100 2.031157 CGGTCAAAGGTCAAACATGTCC 60.031 50.000 0.00 0.00 0.00 4.02
100 101 2.955660 GGTCAAAGGTCAAACATGTCCA 59.044 45.455 0.00 0.00 0.00 4.02
101 102 3.243401 GGTCAAAGGTCAAACATGTCCAC 60.243 47.826 0.00 0.00 0.00 4.02
102 103 3.632145 GTCAAAGGTCAAACATGTCCACT 59.368 43.478 0.00 0.00 0.00 4.00
103 104 4.097892 GTCAAAGGTCAAACATGTCCACTT 59.902 41.667 0.00 0.00 0.00 3.16
104 105 4.097741 TCAAAGGTCAAACATGTCCACTTG 59.902 41.667 0.00 0.00 0.00 3.16
105 106 3.297134 AGGTCAAACATGTCCACTTGT 57.703 42.857 0.00 0.00 36.02 3.16
106 107 3.631250 AGGTCAAACATGTCCACTTGTT 58.369 40.909 0.00 5.39 43.30 2.83
107 108 3.381272 AGGTCAAACATGTCCACTTGTTG 59.619 43.478 10.73 0.00 41.47 3.33
108 109 3.130340 GGTCAAACATGTCCACTTGTTGT 59.870 43.478 10.73 1.45 41.47 3.32
109 110 4.381505 GGTCAAACATGTCCACTTGTTGTT 60.382 41.667 10.73 0.00 41.47 2.83
110 111 4.798387 GTCAAACATGTCCACTTGTTGTTC 59.202 41.667 10.73 3.04 41.47 3.18
111 112 4.460731 TCAAACATGTCCACTTGTTGTTCA 59.539 37.500 10.73 0.00 41.47 3.18
112 113 4.637483 AACATGTCCACTTGTTGTTCAG 57.363 40.909 0.00 0.00 41.00 3.02
113 114 2.951642 ACATGTCCACTTGTTGTTCAGG 59.048 45.455 0.00 0.00 31.23 3.86
114 115 2.799126 TGTCCACTTGTTGTTCAGGT 57.201 45.000 0.00 0.00 36.81 4.00
115 116 2.639065 TGTCCACTTGTTGTTCAGGTC 58.361 47.619 0.00 0.00 34.09 3.85
116 117 2.026729 TGTCCACTTGTTGTTCAGGTCA 60.027 45.455 0.00 0.00 34.09 4.02
117 118 3.013921 GTCCACTTGTTGTTCAGGTCAA 58.986 45.455 0.00 0.00 34.09 3.18
118 119 3.013921 TCCACTTGTTGTTCAGGTCAAC 58.986 45.455 0.00 0.00 43.48 3.18
119 120 2.099098 CCACTTGTTGTTCAGGTCAACC 59.901 50.000 6.38 0.00 42.82 3.77
120 121 2.099098 CACTTGTTGTTCAGGTCAACCC 59.901 50.000 6.38 0.00 42.82 4.11
130 131 0.035458 AGGTCAACCCTGAAGAAGCG 59.965 55.000 0.00 0.00 44.08 4.68
131 132 0.034896 GGTCAACCCTGAAGAAGCGA 59.965 55.000 0.00 0.00 31.88 4.93
132 133 1.339151 GGTCAACCCTGAAGAAGCGAT 60.339 52.381 0.00 0.00 31.88 4.58
133 134 2.003301 GTCAACCCTGAAGAAGCGATC 58.997 52.381 0.00 0.00 31.88 3.69
134 135 1.002366 CAACCCTGAAGAAGCGATCG 58.998 55.000 11.69 11.69 0.00 3.69
135 136 0.108138 AACCCTGAAGAAGCGATCGG 60.108 55.000 18.30 0.00 0.00 4.18
136 137 1.227380 CCCTGAAGAAGCGATCGGG 60.227 63.158 18.30 6.52 41.05 5.14
137 138 1.884926 CCTGAAGAAGCGATCGGGC 60.885 63.158 18.30 0.05 35.42 6.13
138 139 2.202743 TGAAGAAGCGATCGGGCG 60.203 61.111 18.30 0.00 38.18 6.13
139 140 2.202756 GAAGAAGCGATCGGGCGT 60.203 61.111 18.30 0.00 38.18 5.68
140 141 1.065273 GAAGAAGCGATCGGGCGTA 59.935 57.895 18.30 0.00 38.18 4.42
141 142 0.318784 GAAGAAGCGATCGGGCGTAT 60.319 55.000 18.30 0.00 38.18 3.06
142 143 0.597637 AAGAAGCGATCGGGCGTATG 60.598 55.000 18.30 0.00 38.18 2.39
143 144 2.658707 GAAGCGATCGGGCGTATGC 61.659 63.158 18.30 0.00 41.71 3.14
144 145 3.151958 AAGCGATCGGGCGTATGCT 62.152 57.895 18.30 0.00 42.25 3.79
145 146 3.106407 GCGATCGGGCGTATGCTC 61.106 66.667 18.30 0.69 42.25 4.26
146 147 2.645567 CGATCGGGCGTATGCTCT 59.354 61.111 7.38 0.00 40.44 4.09
147 148 1.007271 CGATCGGGCGTATGCTCTT 60.007 57.895 7.38 0.00 40.44 2.85
148 149 1.278172 CGATCGGGCGTATGCTCTTG 61.278 60.000 7.38 0.00 40.44 3.02
149 150 0.032130 GATCGGGCGTATGCTCTTGA 59.968 55.000 5.03 0.00 40.44 3.02
150 151 0.249489 ATCGGGCGTATGCTCTTGAC 60.249 55.000 5.03 0.00 40.44 3.18
151 152 2.230940 CGGGCGTATGCTCTTGACG 61.231 63.158 5.03 0.00 40.44 4.35
152 153 1.141019 GGGCGTATGCTCTTGACGA 59.859 57.895 6.92 0.00 39.08 4.20
153 154 0.872021 GGGCGTATGCTCTTGACGAG 60.872 60.000 6.92 0.00 39.08 4.18
160 161 3.760673 CTCTTGACGAGCGACAGC 58.239 61.111 0.00 0.00 45.58 4.40
161 162 1.803519 CTCTTGACGAGCGACAGCC 60.804 63.158 0.00 0.00 46.67 4.85
162 163 3.175240 CTTGACGAGCGACAGCCG 61.175 66.667 0.00 0.00 46.67 5.52
163 164 3.610791 CTTGACGAGCGACAGCCGA 62.611 63.158 0.00 0.00 46.67 5.54
164 165 2.874010 CTTGACGAGCGACAGCCGAT 62.874 60.000 0.00 0.00 46.67 4.18
176 177 2.408022 GCCGATCGCTCGTGTAGT 59.592 61.111 10.32 0.00 43.49 2.73
177 178 1.226603 GCCGATCGCTCGTGTAGTT 60.227 57.895 10.32 0.00 43.49 2.24
178 179 1.472276 GCCGATCGCTCGTGTAGTTG 61.472 60.000 10.32 0.00 43.49 3.16
179 180 0.866061 CCGATCGCTCGTGTAGTTGG 60.866 60.000 10.32 0.00 43.49 3.77
180 181 0.866061 CGATCGCTCGTGTAGTTGGG 60.866 60.000 0.26 0.00 40.07 4.12
181 182 1.146358 GATCGCTCGTGTAGTTGGGC 61.146 60.000 0.00 0.00 0.00 5.36
182 183 2.573609 ATCGCTCGTGTAGTTGGGCC 62.574 60.000 0.00 0.00 0.00 5.80
183 184 2.813908 GCTCGTGTAGTTGGGCCG 60.814 66.667 0.00 0.00 0.00 6.13
184 185 2.125673 CTCGTGTAGTTGGGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
185 186 4.382320 TCGTGTAGTTGGGCCGGC 62.382 66.667 21.18 21.18 0.00 6.13
196 197 4.759205 GGCCGGCCCATGAAAGGT 62.759 66.667 36.64 0.00 0.00 3.50
197 198 3.451894 GCCGGCCCATGAAAGGTG 61.452 66.667 18.11 0.00 0.00 4.00
198 199 2.755469 CCGGCCCATGAAAGGTGG 60.755 66.667 0.00 0.00 36.47 4.61
199 200 3.451894 CGGCCCATGAAAGGTGGC 61.452 66.667 0.00 0.00 43.26 5.01
200 201 2.283821 GGCCCATGAAAGGTGGCA 60.284 61.111 10.10 0.00 45.83 4.92
201 202 1.686800 GGCCCATGAAAGGTGGCAT 60.687 57.895 10.10 0.00 45.83 4.40
202 203 1.518774 GCCCATGAAAGGTGGCATG 59.481 57.895 0.00 0.00 43.46 4.06
203 204 1.518774 CCCATGAAAGGTGGCATGC 59.481 57.895 9.90 9.90 40.33 4.06
204 205 1.140161 CCATGAAAGGTGGCATGCG 59.860 57.895 12.44 0.00 40.33 4.73
205 206 1.314534 CCATGAAAGGTGGCATGCGA 61.315 55.000 12.44 4.51 40.33 5.10
206 207 0.099968 CATGAAAGGTGGCATGCGAG 59.900 55.000 12.44 0.00 35.93 5.03
207 208 1.660560 ATGAAAGGTGGCATGCGAGC 61.661 55.000 22.42 22.42 0.00 5.03
208 209 3.386867 GAAAGGTGGCATGCGAGCG 62.387 63.158 23.33 0.00 34.64 5.03
209 210 4.704833 AAGGTGGCATGCGAGCGT 62.705 61.111 23.33 18.82 34.64 5.07
210 211 4.704833 AGGTGGCATGCGAGCGTT 62.705 61.111 23.33 7.01 34.64 4.84
211 212 4.465512 GGTGGCATGCGAGCGTTG 62.466 66.667 16.13 0.00 34.64 4.10
212 213 3.726517 GTGGCATGCGAGCGTTGT 61.727 61.111 12.44 0.00 34.64 3.32
213 214 3.725459 TGGCATGCGAGCGTTGTG 61.725 61.111 12.44 0.00 34.64 3.33
214 215 3.726517 GGCATGCGAGCGTTGTGT 61.727 61.111 12.44 0.00 34.64 3.72
215 216 2.202222 GCATGCGAGCGTTGTGTC 60.202 61.111 0.00 0.00 0.00 3.67
216 217 2.671177 GCATGCGAGCGTTGTGTCT 61.671 57.895 0.00 0.00 0.00 3.41
217 218 1.131218 CATGCGAGCGTTGTGTCTG 59.869 57.895 0.00 0.00 0.00 3.51
218 219 2.671177 ATGCGAGCGTTGTGTCTGC 61.671 57.895 0.00 0.00 0.00 4.26
219 220 3.038417 GCGAGCGTTGTGTCTGCT 61.038 61.111 0.00 0.00 42.73 4.24
220 221 2.849007 CGAGCGTTGTGTCTGCTG 59.151 61.111 0.00 0.00 39.49 4.41
221 222 1.661509 CGAGCGTTGTGTCTGCTGA 60.662 57.895 0.00 0.00 39.49 4.26
222 223 1.856012 GAGCGTTGTGTCTGCTGAC 59.144 57.895 16.18 16.18 39.49 3.51
223 224 0.598680 GAGCGTTGTGTCTGCTGACT 60.599 55.000 22.31 2.49 43.29 3.41
224 225 0.673985 AGCGTTGTGTCTGCTGACTA 59.326 50.000 22.31 10.44 43.29 2.59
225 226 1.063806 GCGTTGTGTCTGCTGACTAG 58.936 55.000 22.31 11.15 43.29 2.57
236 237 0.031994 GCTGACTAGCTGCTAGGAGC 59.968 60.000 33.16 31.69 46.57 4.70
238 239 1.608590 CTGACTAGCTGCTAGGAGCTC 59.391 57.143 38.03 25.48 46.85 4.09
239 240 0.958822 GACTAGCTGCTAGGAGCTCC 59.041 60.000 38.03 26.22 46.85 4.70
240 241 0.469144 ACTAGCTGCTAGGAGCTCCC 60.469 60.000 38.03 14.74 46.85 4.30
241 242 1.523154 CTAGCTGCTAGGAGCTCCCG 61.523 65.000 38.03 24.19 46.85 5.14
242 243 4.600576 GCTGCTAGGAGCTCCCGC 62.601 72.222 29.54 29.05 42.97 6.13
251 252 4.199804 AGCTCCCGCTGTATAGGG 57.800 61.111 0.00 0.00 46.86 3.53
258 259 1.912417 CCGCTGTATAGGGAGTAGCT 58.088 55.000 5.05 0.00 39.07 3.32
259 260 2.240279 CCGCTGTATAGGGAGTAGCTT 58.760 52.381 5.05 0.00 39.07 3.74
260 261 2.029828 CCGCTGTATAGGGAGTAGCTTG 60.030 54.545 5.05 0.00 39.07 4.01
261 262 2.885266 CGCTGTATAGGGAGTAGCTTGA 59.115 50.000 0.00 0.00 39.07 3.02
262 263 3.304794 CGCTGTATAGGGAGTAGCTTGAC 60.305 52.174 0.00 0.00 39.07 3.18
263 264 3.637229 GCTGTATAGGGAGTAGCTTGACA 59.363 47.826 0.00 0.00 0.00 3.58
264 265 4.500035 GCTGTATAGGGAGTAGCTTGACAC 60.500 50.000 0.00 0.00 0.00 3.67
265 266 4.606210 TGTATAGGGAGTAGCTTGACACA 58.394 43.478 0.00 0.00 0.00 3.72
266 267 5.020795 TGTATAGGGAGTAGCTTGACACAA 58.979 41.667 0.00 0.00 0.00 3.33
267 268 5.482526 TGTATAGGGAGTAGCTTGACACAAA 59.517 40.000 0.00 0.00 0.00 2.83
268 269 3.127425 AGGGAGTAGCTTGACACAAAC 57.873 47.619 0.00 0.00 0.00 2.93
269 270 2.152016 GGGAGTAGCTTGACACAAACC 58.848 52.381 0.00 0.00 0.00 3.27
270 271 2.486548 GGGAGTAGCTTGACACAAACCA 60.487 50.000 0.00 0.00 0.00 3.67
271 272 2.808543 GGAGTAGCTTGACACAAACCAG 59.191 50.000 0.00 0.00 0.00 4.00
272 273 2.222027 AGTAGCTTGACACAAACCAGC 58.778 47.619 0.00 0.00 0.00 4.85
273 274 1.069906 GTAGCTTGACACAAACCAGCG 60.070 52.381 0.00 0.00 0.00 5.18
274 275 1.658409 GCTTGACACAAACCAGCGC 60.658 57.895 0.00 0.00 0.00 5.92
275 276 1.726865 CTTGACACAAACCAGCGCA 59.273 52.632 11.47 0.00 0.00 6.09
276 277 0.592247 CTTGACACAAACCAGCGCAC 60.592 55.000 11.47 0.00 0.00 5.34
277 278 1.308783 TTGACACAAACCAGCGCACA 61.309 50.000 11.47 0.00 0.00 4.57
278 279 1.298339 GACACAAACCAGCGCACAC 60.298 57.895 11.47 0.00 0.00 3.82
279 280 1.987704 GACACAAACCAGCGCACACA 61.988 55.000 11.47 0.00 0.00 3.72
342 343 2.125912 GAGAGCGCGTGTGATGGT 60.126 61.111 8.43 0.00 0.00 3.55
633 634 1.138859 GGTTTTGGCTGGCTCTGTTTT 59.861 47.619 2.00 0.00 0.00 2.43
959 966 4.899457 TGAGGATAAGGGAGCTATTTTCGA 59.101 41.667 0.00 0.00 0.00 3.71
1156 1167 1.455773 ATCAGCCGTGATCGAGGGA 60.456 57.895 8.16 0.00 39.37 4.20
1255 1266 2.363711 GATGACGGATGCCACGGCTA 62.364 60.000 9.92 0.00 40.77 3.93
1998 2166 9.372189 TGTAGTATACCTAAGGATAAAAGGGTC 57.628 37.037 0.00 0.00 42.12 4.46
2160 2329 1.582968 GCTAACCTCACGGTCACGA 59.417 57.895 0.00 0.00 44.73 4.35
2174 2343 3.488553 CGGTCACGAATATGCTCACTACA 60.489 47.826 0.00 0.00 44.60 2.74
2243 2412 4.148825 GTCACGCTCGGCCAGGAT 62.149 66.667 2.24 0.00 0.00 3.24
2302 2471 2.660064 CCGGTTCTGGTCAGGAGGG 61.660 68.421 0.00 0.00 0.00 4.30
2540 2717 2.947652 TGCTGCTTCTAATTCTGATGCC 59.052 45.455 0.00 4.13 34.85 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.224137 TGGCGGATTTGCAAAATGTTCA 60.224 40.909 17.19 9.54 36.28 3.18
1 2 2.411904 TGGCGGATTTGCAAAATGTTC 58.588 42.857 17.19 8.95 36.28 3.18
2 3 2.540265 TGGCGGATTTGCAAAATGTT 57.460 40.000 17.19 0.00 36.28 2.71
3 4 2.540265 TTGGCGGATTTGCAAAATGT 57.460 40.000 17.19 0.00 36.28 2.71
4 5 5.738118 AATATTGGCGGATTTGCAAAATG 57.262 34.783 17.19 9.91 36.28 2.32
5 6 6.756299 AAAATATTGGCGGATTTGCAAAAT 57.244 29.167 17.19 5.75 36.28 1.82
6 7 6.566197 AAAAATATTGGCGGATTTGCAAAA 57.434 29.167 17.19 0.00 36.28 2.44
30 31 9.964354 TCTTTTTAGAAGATCTCATGGATTTGA 57.036 29.630 0.00 0.00 34.33 2.69
35 36 9.388506 GTTCATCTTTTTAGAAGATCTCATGGA 57.611 33.333 0.00 0.00 34.96 3.41
36 37 9.393512 AGTTCATCTTTTTAGAAGATCTCATGG 57.606 33.333 0.00 0.00 34.96 3.66
53 54 9.450807 CGTTGACTTTCAAAAATAGTTCATCTT 57.549 29.630 0.00 0.00 38.22 2.40
54 55 8.076178 CCGTTGACTTTCAAAAATAGTTCATCT 58.924 33.333 0.00 0.00 38.22 2.90
55 56 7.860872 ACCGTTGACTTTCAAAAATAGTTCATC 59.139 33.333 0.00 0.00 38.22 2.92
56 57 7.712797 ACCGTTGACTTTCAAAAATAGTTCAT 58.287 30.769 0.00 0.00 38.22 2.57
57 58 7.090953 ACCGTTGACTTTCAAAAATAGTTCA 57.909 32.000 0.00 0.00 38.22 3.18
58 59 7.190871 TGACCGTTGACTTTCAAAAATAGTTC 58.809 34.615 0.00 0.00 38.22 3.01
59 60 7.090953 TGACCGTTGACTTTCAAAAATAGTT 57.909 32.000 0.00 0.00 38.22 2.24
60 61 6.687081 TGACCGTTGACTTTCAAAAATAGT 57.313 33.333 0.00 0.00 38.22 2.12
61 62 7.167468 CCTTTGACCGTTGACTTTCAAAAATAG 59.833 37.037 0.00 0.00 38.22 1.73
62 63 6.975772 CCTTTGACCGTTGACTTTCAAAAATA 59.024 34.615 0.00 0.00 38.22 1.40
63 64 5.810074 CCTTTGACCGTTGACTTTCAAAAAT 59.190 36.000 0.00 0.00 38.22 1.82
64 65 5.164954 CCTTTGACCGTTGACTTTCAAAAA 58.835 37.500 0.00 0.00 38.22 1.94
65 66 4.218852 ACCTTTGACCGTTGACTTTCAAAA 59.781 37.500 0.00 0.00 38.22 2.44
66 67 3.759618 ACCTTTGACCGTTGACTTTCAAA 59.240 39.130 0.00 0.00 38.22 2.69
67 68 3.349022 ACCTTTGACCGTTGACTTTCAA 58.651 40.909 0.00 0.00 33.32 2.69
68 69 2.940410 GACCTTTGACCGTTGACTTTCA 59.060 45.455 0.00 0.00 0.00 2.69
69 70 2.940410 TGACCTTTGACCGTTGACTTTC 59.060 45.455 0.00 0.00 0.00 2.62
70 71 2.993937 TGACCTTTGACCGTTGACTTT 58.006 42.857 0.00 0.00 0.00 2.66
71 72 2.702592 TGACCTTTGACCGTTGACTT 57.297 45.000 0.00 0.00 0.00 3.01
72 73 2.681344 GTTTGACCTTTGACCGTTGACT 59.319 45.455 0.00 0.00 0.00 3.41
73 74 2.420722 TGTTTGACCTTTGACCGTTGAC 59.579 45.455 0.00 0.00 0.00 3.18
74 75 2.712709 TGTTTGACCTTTGACCGTTGA 58.287 42.857 0.00 0.00 0.00 3.18
75 76 3.181491 ACATGTTTGACCTTTGACCGTTG 60.181 43.478 0.00 0.00 0.00 4.10
76 77 3.020984 ACATGTTTGACCTTTGACCGTT 58.979 40.909 0.00 0.00 0.00 4.44
77 78 2.616842 GACATGTTTGACCTTTGACCGT 59.383 45.455 0.00 0.00 0.00 4.83
78 79 2.031157 GGACATGTTTGACCTTTGACCG 60.031 50.000 0.00 0.00 35.17 4.79
79 80 2.955660 TGGACATGTTTGACCTTTGACC 59.044 45.455 0.00 0.00 38.35 4.02
80 81 3.632145 AGTGGACATGTTTGACCTTTGAC 59.368 43.478 0.00 0.00 38.35 3.18
81 82 3.897239 AGTGGACATGTTTGACCTTTGA 58.103 40.909 0.00 0.00 38.35 2.69
82 83 4.142182 ACAAGTGGACATGTTTGACCTTTG 60.142 41.667 13.56 13.21 38.35 2.77
83 84 4.023291 ACAAGTGGACATGTTTGACCTTT 58.977 39.130 13.56 1.70 38.35 3.11
84 85 3.631250 ACAAGTGGACATGTTTGACCTT 58.369 40.909 13.56 3.85 38.35 3.50
85 86 3.297134 ACAAGTGGACATGTTTGACCT 57.703 42.857 13.56 0.00 38.35 3.85
86 87 3.130340 ACAACAAGTGGACATGTTTGACC 59.870 43.478 13.56 4.84 35.85 4.02
87 88 4.370364 ACAACAAGTGGACATGTTTGAC 57.630 40.909 13.56 5.14 35.85 3.18
88 89 4.460731 TGAACAACAAGTGGACATGTTTGA 59.539 37.500 13.56 0.00 35.85 2.69
89 90 4.742417 TGAACAACAAGTGGACATGTTTG 58.258 39.130 0.00 2.86 35.85 2.93
90 91 4.142182 CCTGAACAACAAGTGGACATGTTT 60.142 41.667 0.00 0.00 35.85 2.83
91 92 3.381272 CCTGAACAACAAGTGGACATGTT 59.619 43.478 0.00 0.00 38.17 2.71
92 93 2.951642 CCTGAACAACAAGTGGACATGT 59.048 45.455 0.00 0.00 0.00 3.21
93 94 2.951642 ACCTGAACAACAAGTGGACATG 59.048 45.455 0.00 0.00 0.00 3.21
94 95 3.214328 GACCTGAACAACAAGTGGACAT 58.786 45.455 0.00 0.00 0.00 3.06
95 96 2.026729 TGACCTGAACAACAAGTGGACA 60.027 45.455 0.00 0.00 0.00 4.02
96 97 2.639065 TGACCTGAACAACAAGTGGAC 58.361 47.619 0.00 0.00 0.00 4.02
97 98 3.013921 GTTGACCTGAACAACAAGTGGA 58.986 45.455 0.00 0.00 44.49 4.02
98 99 2.099098 GGTTGACCTGAACAACAAGTGG 59.901 50.000 0.00 0.00 46.16 4.00
99 100 2.099098 GGGTTGACCTGAACAACAAGTG 59.901 50.000 0.00 0.00 46.16 3.16
100 101 2.375146 GGGTTGACCTGAACAACAAGT 58.625 47.619 0.00 0.00 46.16 3.16
112 113 0.034896 TCGCTTCTTCAGGGTTGACC 59.965 55.000 0.00 0.00 36.78 4.02
113 114 2.003301 GATCGCTTCTTCAGGGTTGAC 58.997 52.381 0.00 0.00 36.78 3.18
114 115 1.404181 CGATCGCTTCTTCAGGGTTGA 60.404 52.381 0.26 0.00 36.78 3.18
115 116 1.002366 CGATCGCTTCTTCAGGGTTG 58.998 55.000 0.26 0.00 36.78 3.77
116 117 0.108138 CCGATCGCTTCTTCAGGGTT 60.108 55.000 10.32 0.00 36.78 4.11
117 118 1.517832 CCGATCGCTTCTTCAGGGT 59.482 57.895 10.32 0.00 36.78 4.34
118 119 1.227380 CCCGATCGCTTCTTCAGGG 60.227 63.158 10.32 0.00 36.76 4.45
119 120 1.884926 GCCCGATCGCTTCTTCAGG 60.885 63.158 10.32 3.87 0.00 3.86
120 121 2.233654 CGCCCGATCGCTTCTTCAG 61.234 63.158 10.32 0.00 0.00 3.02
121 122 1.659622 TACGCCCGATCGCTTCTTCA 61.660 55.000 10.32 0.00 0.00 3.02
122 123 0.318784 ATACGCCCGATCGCTTCTTC 60.319 55.000 10.32 0.00 0.00 2.87
123 124 0.597637 CATACGCCCGATCGCTTCTT 60.598 55.000 10.32 0.00 0.00 2.52
124 125 1.007271 CATACGCCCGATCGCTTCT 60.007 57.895 10.32 0.00 0.00 2.85
125 126 2.658707 GCATACGCCCGATCGCTTC 61.659 63.158 10.32 0.00 0.00 3.86
126 127 2.661866 GCATACGCCCGATCGCTT 60.662 61.111 10.32 0.00 0.00 4.68
127 128 3.559657 GAGCATACGCCCGATCGCT 62.560 63.158 10.32 0.00 39.83 4.93
128 129 3.106407 GAGCATACGCCCGATCGC 61.106 66.667 10.32 0.00 39.83 4.58
129 130 1.007271 AAGAGCATACGCCCGATCG 60.007 57.895 8.51 8.51 39.83 3.69
130 131 0.032130 TCAAGAGCATACGCCCGATC 59.968 55.000 0.00 0.00 39.83 3.69
131 132 0.249489 GTCAAGAGCATACGCCCGAT 60.249 55.000 0.00 0.00 39.83 4.18
132 133 1.141019 GTCAAGAGCATACGCCCGA 59.859 57.895 0.00 0.00 39.83 5.14
133 134 2.230940 CGTCAAGAGCATACGCCCG 61.231 63.158 0.00 0.00 39.83 6.13
134 135 0.872021 CTCGTCAAGAGCATACGCCC 60.872 60.000 0.00 0.00 40.54 6.13
135 136 2.582959 CTCGTCAAGAGCATACGCC 58.417 57.895 0.00 0.00 40.54 5.68
144 145 2.258591 GGCTGTCGCTCGTCAAGA 59.741 61.111 0.00 0.00 36.09 3.02
145 146 2.874010 ATCGGCTGTCGCTCGTCAAG 62.874 60.000 0.00 0.00 39.05 3.02
146 147 2.867333 GATCGGCTGTCGCTCGTCAA 62.867 60.000 0.00 0.00 39.05 3.18
147 148 3.396911 GATCGGCTGTCGCTCGTCA 62.397 63.158 0.00 0.00 39.05 4.35
148 149 2.652496 GATCGGCTGTCGCTCGTC 60.652 66.667 0.00 0.00 39.05 4.20
159 160 1.226603 AACTACACGAGCGATCGGC 60.227 57.895 28.05 9.32 44.05 5.54
160 161 0.866061 CCAACTACACGAGCGATCGG 60.866 60.000 28.05 17.96 37.45 4.18
161 162 0.866061 CCCAACTACACGAGCGATCG 60.866 60.000 23.12 23.12 39.31 3.69
162 163 1.146358 GCCCAACTACACGAGCGATC 61.146 60.000 0.00 0.00 0.00 3.69
163 164 1.153628 GCCCAACTACACGAGCGAT 60.154 57.895 0.00 0.00 0.00 4.58
164 165 2.260434 GCCCAACTACACGAGCGA 59.740 61.111 0.00 0.00 0.00 4.93
165 166 2.813908 GGCCCAACTACACGAGCG 60.814 66.667 0.00 0.00 0.00 5.03
166 167 2.813908 CGGCCCAACTACACGAGC 60.814 66.667 0.00 0.00 0.00 5.03
167 168 2.125673 CCGGCCCAACTACACGAG 60.126 66.667 0.00 0.00 0.00 4.18
168 169 4.382320 GCCGGCCCAACTACACGA 62.382 66.667 18.11 0.00 0.00 4.35
179 180 4.759205 ACCTTTCATGGGCCGGCC 62.759 66.667 38.57 38.57 0.00 6.13
180 181 3.451894 CACCTTTCATGGGCCGGC 61.452 66.667 21.18 21.18 0.00 6.13
181 182 2.755469 CCACCTTTCATGGGCCGG 60.755 66.667 0.00 0.00 33.18 6.13
182 183 3.451894 GCCACCTTTCATGGGCCG 61.452 66.667 0.00 0.00 40.55 6.13
183 184 1.686800 ATGCCACCTTTCATGGGCC 60.687 57.895 0.00 0.00 45.83 5.80
184 185 1.518774 CATGCCACCTTTCATGGGC 59.481 57.895 1.80 1.80 46.58 5.36
185 186 1.518774 GCATGCCACCTTTCATGGG 59.481 57.895 6.36 0.00 40.16 4.00
186 187 1.140161 CGCATGCCACCTTTCATGG 59.860 57.895 13.15 0.00 40.16 3.66
187 188 0.099968 CTCGCATGCCACCTTTCATG 59.900 55.000 13.15 0.00 42.08 3.07
188 189 1.660560 GCTCGCATGCCACCTTTCAT 61.661 55.000 13.15 0.00 0.00 2.57
189 190 2.334946 GCTCGCATGCCACCTTTCA 61.335 57.895 13.15 0.00 0.00 2.69
190 191 2.486966 GCTCGCATGCCACCTTTC 59.513 61.111 13.15 0.00 0.00 2.62
191 192 3.434319 CGCTCGCATGCCACCTTT 61.434 61.111 13.15 0.00 0.00 3.11
192 193 4.704833 ACGCTCGCATGCCACCTT 62.705 61.111 13.15 0.00 0.00 3.50
193 194 4.704833 AACGCTCGCATGCCACCT 62.705 61.111 13.15 0.00 0.00 4.00
194 195 4.465512 CAACGCTCGCATGCCACC 62.466 66.667 13.15 0.00 0.00 4.61
195 196 3.726517 ACAACGCTCGCATGCCAC 61.727 61.111 13.15 0.15 0.00 5.01
196 197 3.725459 CACAACGCTCGCATGCCA 61.725 61.111 13.15 0.00 0.00 4.92
197 198 3.651480 GACACAACGCTCGCATGCC 62.651 63.158 13.15 0.00 0.00 4.40
198 199 2.202222 GACACAACGCTCGCATGC 60.202 61.111 7.91 7.91 0.00 4.06
199 200 1.131218 CAGACACAACGCTCGCATG 59.869 57.895 0.00 0.00 0.00 4.06
200 201 2.671177 GCAGACACAACGCTCGCAT 61.671 57.895 0.00 0.00 0.00 4.73
201 202 3.337889 GCAGACACAACGCTCGCA 61.338 61.111 0.00 0.00 0.00 5.10
202 203 3.038417 AGCAGACACAACGCTCGC 61.038 61.111 0.00 0.00 0.00 5.03
203 204 1.661509 TCAGCAGACACAACGCTCG 60.662 57.895 0.00 0.00 32.48 5.03
204 205 1.856012 GTCAGCAGACACAACGCTC 59.144 57.895 4.10 0.00 44.34 5.03
205 206 4.033894 GTCAGCAGACACAACGCT 57.966 55.556 4.10 0.00 44.34 5.07
238 239 0.889306 GCTACTCCCTATACAGCGGG 59.111 60.000 0.00 0.00 42.05 6.13
239 240 1.912417 AGCTACTCCCTATACAGCGG 58.088 55.000 0.00 0.00 37.32 5.52
240 241 2.885266 TCAAGCTACTCCCTATACAGCG 59.115 50.000 0.00 0.00 37.32 5.18
241 242 3.637229 TGTCAAGCTACTCCCTATACAGC 59.363 47.826 0.00 0.00 0.00 4.40
242 243 4.645136 TGTGTCAAGCTACTCCCTATACAG 59.355 45.833 0.00 0.00 0.00 2.74
243 244 4.606210 TGTGTCAAGCTACTCCCTATACA 58.394 43.478 0.00 0.00 0.00 2.29
244 245 5.593679 TTGTGTCAAGCTACTCCCTATAC 57.406 43.478 0.00 0.00 0.00 1.47
245 246 5.105064 GGTTTGTGTCAAGCTACTCCCTATA 60.105 44.000 0.00 0.00 0.00 1.31
246 247 4.323562 GGTTTGTGTCAAGCTACTCCCTAT 60.324 45.833 0.00 0.00 0.00 2.57
247 248 3.007614 GGTTTGTGTCAAGCTACTCCCTA 59.992 47.826 0.00 0.00 0.00 3.53
248 249 2.224548 GGTTTGTGTCAAGCTACTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
249 250 2.152016 GGTTTGTGTCAAGCTACTCCC 58.848 52.381 0.00 0.00 0.00 4.30
250 251 2.808543 CTGGTTTGTGTCAAGCTACTCC 59.191 50.000 0.00 0.00 0.00 3.85
251 252 2.224314 GCTGGTTTGTGTCAAGCTACTC 59.776 50.000 0.00 0.00 0.00 2.59
252 253 2.222027 GCTGGTTTGTGTCAAGCTACT 58.778 47.619 0.00 0.00 0.00 2.57
253 254 1.069906 CGCTGGTTTGTGTCAAGCTAC 60.070 52.381 0.00 0.00 0.00 3.58
254 255 1.225855 CGCTGGTTTGTGTCAAGCTA 58.774 50.000 0.00 0.00 0.00 3.32
255 256 2.024918 CGCTGGTTTGTGTCAAGCT 58.975 52.632 0.00 0.00 0.00 3.74
256 257 1.658409 GCGCTGGTTTGTGTCAAGC 60.658 57.895 0.00 0.00 0.00 4.01
257 258 0.592247 GTGCGCTGGTTTGTGTCAAG 60.592 55.000 9.73 0.00 0.00 3.02
258 259 1.308783 TGTGCGCTGGTTTGTGTCAA 61.309 50.000 9.73 0.00 0.00 3.18
259 260 1.746991 TGTGCGCTGGTTTGTGTCA 60.747 52.632 9.73 0.00 0.00 3.58
260 261 1.298339 GTGTGCGCTGGTTTGTGTC 60.298 57.895 9.73 0.00 0.00 3.67
261 262 2.043405 TGTGTGCGCTGGTTTGTGT 61.043 52.632 9.73 0.00 0.00 3.72
262 263 1.586042 GTGTGTGCGCTGGTTTGTG 60.586 57.895 9.73 0.00 0.00 3.33
263 264 2.770589 GGTGTGTGCGCTGGTTTGT 61.771 57.895 9.73 0.00 0.00 2.83
264 265 2.026014 GGTGTGTGCGCTGGTTTG 59.974 61.111 9.73 0.00 0.00 2.93
265 266 2.439338 TGGTGTGTGCGCTGGTTT 60.439 55.556 9.73 0.00 0.00 3.27
266 267 2.901840 CTGGTGTGTGCGCTGGTT 60.902 61.111 9.73 0.00 0.00 3.67
267 268 4.935495 CCTGGTGTGTGCGCTGGT 62.935 66.667 9.73 0.00 0.00 4.00
274 275 4.351054 GGGAGCCCCTGGTGTGTG 62.351 72.222 3.16 0.00 41.34 3.82
633 634 5.049060 CCATTACAGTCAACACAAATTCCGA 60.049 40.000 0.00 0.00 0.00 4.55
852 859 2.497675 GCTCCTACTGTGATCTGGACAA 59.502 50.000 0.00 0.00 0.00 3.18
1156 1167 1.078426 GACCCGCCATAGCACACTT 60.078 57.895 0.00 0.00 39.83 3.16
1255 1266 2.465813 CTGGTGGAGAGAGGATTCAGT 58.534 52.381 0.00 0.00 0.00 3.41
1512 1680 0.957395 CGCTGGCCACATCTTGAACT 60.957 55.000 0.00 0.00 0.00 3.01
1961 2129 5.883503 AGGTATACTACAATAGCGCTCTC 57.116 43.478 16.34 0.00 35.47 3.20
1998 2166 8.129211 ACACTAAGATTCTTTGGAAAAGAAACG 58.871 33.333 16.62 6.83 39.43 3.60
2160 2329 4.326278 CGTTGTCGTTGTAGTGAGCATATT 59.674 41.667 0.00 0.00 0.00 1.28
2174 2343 2.624264 GCAAGCGTCGTTGTCGTT 59.376 55.556 0.00 0.00 38.33 3.85
2243 2412 3.738481 GCCCCATACACCCAGCCA 61.738 66.667 0.00 0.00 0.00 4.75
2247 2416 1.542628 TTGGAGCCCCATACACCCA 60.543 57.895 0.00 0.00 43.12 4.51
2302 2471 4.379174 TCGGAAGAGTTTGCTGGC 57.621 55.556 0.00 0.00 34.84 4.85
2625 2803 2.738521 CCGTGTTCTGGTCAGCCG 60.739 66.667 0.00 0.00 37.67 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.