Multiple sequence alignment - TraesCS6D01G387000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G387000 chr6D 100.000 3042 0 0 1 3042 464230510 464227469 0.000000e+00 5618.0
1 TraesCS6D01G387000 chr6D 95.800 500 14 4 2205 2704 464220635 464220143 0.000000e+00 800.0
2 TraesCS6D01G387000 chr6D 78.838 1153 116 57 1161 2282 464100943 464099888 0.000000e+00 660.0
3 TraesCS6D01G387000 chr6D 90.354 311 23 1 2732 3042 464220144 464219841 4.720000e-108 401.0
4 TraesCS6D01G387000 chr6D 84.932 365 27 12 677 1032 464101549 464101204 8.070000e-91 344.0
5 TraesCS6D01G387000 chr6D 85.992 257 26 9 210 463 446618848 446619097 1.800000e-67 267.0
6 TraesCS6D01G387000 chr6D 83.451 284 29 16 217 490 78818218 78818493 6.510000e-62 248.0
7 TraesCS6D01G387000 chr6D 87.919 149 15 3 1 146 446617931 446618079 4.030000e-39 172.0
8 TraesCS6D01G387000 chr7D 93.967 547 24 6 1 543 492224313 492223772 0.000000e+00 819.0
9 TraesCS6D01G387000 chr7D 88.060 201 21 3 1 198 236522634 236522434 5.070000e-58 235.0
10 TraesCS6D01G387000 chr7D 84.615 91 12 2 121 210 503289169 503289258 4.180000e-14 89.8
11 TraesCS6D01G387000 chr5D 93.161 541 30 5 1 538 538418022 538417486 0.000000e+00 787.0
12 TraesCS6D01G387000 chr5D 84.375 288 28 12 210 488 407694732 407694453 1.800000e-67 267.0
13 TraesCS6D01G387000 chr6A 81.291 1069 110 46 1132 2175 610858192 610857189 0.000000e+00 784.0
14 TraesCS6D01G387000 chr6A 82.136 543 53 21 1474 1981 610665768 610665235 2.800000e-115 425.0
15 TraesCS6D01G387000 chr6A 84.382 461 41 14 678 1113 610858748 610858294 1.010000e-114 424.0
16 TraesCS6D01G387000 chr6A 82.160 213 25 7 1972 2183 610664898 610664698 1.450000e-38 171.0
17 TraesCS6D01G387000 chr6A 89.231 130 10 3 539 666 147891791 147891918 3.140000e-35 159.0
18 TraesCS6D01G387000 chr6A 86.719 128 13 1 539 666 445650624 445650747 4.090000e-29 139.0
19 TraesCS6D01G387000 chr6A 90.411 73 7 0 1195 1267 610665958 610665886 2.500000e-16 97.1
20 TraesCS6D01G387000 chr6A 86.747 83 10 1 2400 2481 610664379 610664297 1.160000e-14 91.6
21 TraesCS6D01G387000 chr6B 80.499 682 90 28 1376 2049 708009988 708009342 1.640000e-132 483.0
22 TraesCS6D01G387000 chr6B 84.694 392 39 14 678 1056 708010634 708010251 3.700000e-99 372.0
23 TraesCS6D01G387000 chr6B 89.384 292 26 2 2187 2478 707801119 707800833 2.230000e-96 363.0
24 TraesCS6D01G387000 chr6B 89.680 281 23 3 2206 2485 708009096 708008821 1.340000e-93 353.0
25 TraesCS6D01G387000 chr6B 90.132 152 10 3 2602 2749 707750293 707750143 3.100000e-45 193.0
26 TraesCS6D01G387000 chr6B 81.513 238 31 5 2799 3036 708006613 708006389 1.860000e-42 183.0
27 TraesCS6D01G387000 chr7B 86.341 410 44 8 136 538 45039834 45039430 1.300000e-118 436.0
28 TraesCS6D01G387000 chr7B 82.963 135 14 8 541 666 592753963 592754097 2.480000e-21 113.0
29 TraesCS6D01G387000 chr7B 84.783 92 8 4 2649 2739 282328014 282327928 1.500000e-13 87.9
30 TraesCS6D01G387000 chr2B 83.864 440 56 9 1116 1552 14599101 14599528 3.650000e-109 405.0
31 TraesCS6D01G387000 chr2B 85.556 270 29 6 210 476 253706958 253706696 1.070000e-69 274.0
32 TraesCS6D01G387000 chr2B 90.667 150 10 4 1 146 740567454 740567305 2.390000e-46 196.0
33 TraesCS6D01G387000 chr2B 86.765 136 10 4 539 666 547230609 547230474 8.790000e-31 145.0
34 TraesCS6D01G387000 chr4D 83.582 335 37 9 212 538 455752484 455752808 6.380000e-77 298.0
35 TraesCS6D01G387000 chr4D 86.869 198 20 6 3 195 455751589 455751785 1.840000e-52 217.0
36 TraesCS6D01G387000 chr4D 87.500 136 11 1 539 668 65099790 65099655 5.250000e-33 152.0
37 TraesCS6D01G387000 chr5B 83.505 291 33 8 1269 1552 399783579 399783861 1.080000e-64 257.0
38 TraesCS6D01G387000 chr5B 87.692 130 12 3 539 666 604606154 604606027 6.800000e-32 148.0
39 TraesCS6D01G387000 chr1B 82.131 291 37 8 1269 1552 532542041 532541759 5.070000e-58 235.0
40 TraesCS6D01G387000 chr1B 87.374 198 21 4 1 195 630550820 630551016 1.100000e-54 224.0
41 TraesCS6D01G387000 chr3A 85.981 214 26 4 1 210 735724617 735724404 3.050000e-55 226.0
42 TraesCS6D01G387000 chr3A 87.192 203 18 7 209 404 455238558 455238759 1.100000e-54 224.0
43 TraesCS6D01G387000 chr3A 80.827 266 35 12 215 470 191840543 191840284 8.610000e-46 195.0
44 TraesCS6D01G387000 chr3A 90.722 97 8 1 575 670 614794772 614794676 8.850000e-26 128.0
45 TraesCS6D01G387000 chr4B 81.119 286 39 8 1274 1552 50404488 50404211 6.610000e-52 215.0
46 TraesCS6D01G387000 chrUn 90.132 152 10 3 2602 2749 208186536 208186386 3.100000e-45 193.0
47 TraesCS6D01G387000 chrUn 90.132 152 10 3 2602 2749 404035382 404035532 3.100000e-45 193.0
48 TraesCS6D01G387000 chr1D 80.841 214 37 4 1 210 342450306 342450519 6.750000e-37 165.0
49 TraesCS6D01G387000 chr1D 84.783 138 10 3 539 666 183354898 183354762 8.850000e-26 128.0
50 TraesCS6D01G387000 chr7A 84.286 140 11 4 539 667 6797630 6797491 3.180000e-25 126.0
51 TraesCS6D01G387000 chr7A 83.696 92 12 2 2642 2733 359047838 359047750 1.940000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G387000 chr6D 464227469 464230510 3041 True 5618.00 5618 100.0000 1 3042 1 chr6D.!!$R1 3041
1 TraesCS6D01G387000 chr6D 464219841 464220635 794 True 600.50 800 93.0770 2205 3042 2 chr6D.!!$R3 837
2 TraesCS6D01G387000 chr6D 464099888 464101549 1661 True 502.00 660 81.8850 677 2282 2 chr6D.!!$R2 1605
3 TraesCS6D01G387000 chr6D 446617931 446619097 1166 False 219.50 267 86.9555 1 463 2 chr6D.!!$F2 462
4 TraesCS6D01G387000 chr7D 492223772 492224313 541 True 819.00 819 93.9670 1 543 1 chr7D.!!$R2 542
5 TraesCS6D01G387000 chr5D 538417486 538418022 536 True 787.00 787 93.1610 1 538 1 chr5D.!!$R2 537
6 TraesCS6D01G387000 chr6A 610857189 610858748 1559 True 604.00 784 82.8365 678 2175 2 chr6A.!!$R2 1497
7 TraesCS6D01G387000 chr6B 708006389 708010634 4245 True 347.75 483 84.0965 678 3036 4 chr6B.!!$R3 2358
8 TraesCS6D01G387000 chr4D 455751589 455752808 1219 False 257.50 298 85.2255 3 538 2 chr4D.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 1439 0.105039 GAAGTGGGAGCACGGATAGG 59.895 60.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2401 3586 0.107831 TGCCTGCCTACGAACTTGTT 59.892 50.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
312 1112 2.039818 TGTTGTGCAAAAGACCCGTA 57.960 45.000 0.00 0.00 0.00 4.02
528 1333 0.388263 GACTGAACGGTCGGGAGTTC 60.388 60.000 15.09 0.00 44.93 3.01
539 1344 1.212229 GGGAGTTCTCGACGTCCAC 59.788 63.158 10.58 1.87 31.21 4.02
542 1347 1.269413 GGAGTTCTCGACGTCCACAAA 60.269 52.381 10.58 0.00 0.00 2.83
543 1348 2.466846 GAGTTCTCGACGTCCACAAAA 58.533 47.619 10.58 0.00 0.00 2.44
544 1349 3.057734 GAGTTCTCGACGTCCACAAAAT 58.942 45.455 10.58 0.00 0.00 1.82
545 1350 4.232221 GAGTTCTCGACGTCCACAAAATA 58.768 43.478 10.58 0.00 0.00 1.40
546 1351 4.624015 AGTTCTCGACGTCCACAAAATAA 58.376 39.130 10.58 0.00 0.00 1.40
547 1352 4.684703 AGTTCTCGACGTCCACAAAATAAG 59.315 41.667 10.58 0.00 0.00 1.73
548 1353 3.581755 TCTCGACGTCCACAAAATAAGG 58.418 45.455 10.58 0.00 0.00 2.69
549 1354 2.070783 TCGACGTCCACAAAATAAGGC 58.929 47.619 10.58 0.00 0.00 4.35
550 1355 1.801771 CGACGTCCACAAAATAAGGCA 59.198 47.619 10.58 0.00 0.00 4.75
551 1356 2.412325 CGACGTCCACAAAATAAGGCAC 60.412 50.000 10.58 0.00 0.00 5.01
552 1357 2.550606 GACGTCCACAAAATAAGGCACA 59.449 45.455 3.51 0.00 0.00 4.57
553 1358 2.952978 ACGTCCACAAAATAAGGCACAA 59.047 40.909 0.00 0.00 0.00 3.33
554 1359 3.243267 ACGTCCACAAAATAAGGCACAAC 60.243 43.478 0.00 0.00 0.00 3.32
555 1360 3.649073 GTCCACAAAATAAGGCACAACC 58.351 45.455 0.00 0.00 39.61 3.77
556 1361 2.630580 TCCACAAAATAAGGCACAACCC 59.369 45.455 0.00 0.00 40.58 4.11
557 1362 2.289382 CCACAAAATAAGGCACAACCCC 60.289 50.000 0.00 0.00 40.58 4.95
558 1363 2.366916 CACAAAATAAGGCACAACCCCA 59.633 45.455 0.00 0.00 40.58 4.96
559 1364 2.367241 ACAAAATAAGGCACAACCCCAC 59.633 45.455 0.00 0.00 40.58 4.61
560 1365 1.639722 AAATAAGGCACAACCCCACC 58.360 50.000 0.00 0.00 40.58 4.61
561 1366 0.783850 AATAAGGCACAACCCCACCT 59.216 50.000 0.00 0.00 40.58 4.00
562 1367 0.783850 ATAAGGCACAACCCCACCTT 59.216 50.000 0.00 0.00 44.56 3.50
563 1368 0.111639 TAAGGCACAACCCCACCTTC 59.888 55.000 0.00 0.00 41.57 3.46
564 1369 1.655114 AAGGCACAACCCCACCTTCT 61.655 55.000 0.00 0.00 38.07 2.85
565 1370 1.152546 GGCACAACCCCACCTTCTT 60.153 57.895 0.00 0.00 0.00 2.52
566 1371 0.111639 GGCACAACCCCACCTTCTTA 59.888 55.000 0.00 0.00 0.00 2.10
567 1372 1.479757 GGCACAACCCCACCTTCTTAA 60.480 52.381 0.00 0.00 0.00 1.85
568 1373 2.312390 GCACAACCCCACCTTCTTAAA 58.688 47.619 0.00 0.00 0.00 1.52
569 1374 2.696187 GCACAACCCCACCTTCTTAAAA 59.304 45.455 0.00 0.00 0.00 1.52
570 1375 3.323691 GCACAACCCCACCTTCTTAAAAT 59.676 43.478 0.00 0.00 0.00 1.82
571 1376 4.560716 GCACAACCCCACCTTCTTAAAATC 60.561 45.833 0.00 0.00 0.00 2.17
572 1377 4.586841 CACAACCCCACCTTCTTAAAATCA 59.413 41.667 0.00 0.00 0.00 2.57
573 1378 5.069781 CACAACCCCACCTTCTTAAAATCAA 59.930 40.000 0.00 0.00 0.00 2.57
574 1379 5.304357 ACAACCCCACCTTCTTAAAATCAAG 59.696 40.000 0.00 0.00 0.00 3.02
575 1380 4.416516 ACCCCACCTTCTTAAAATCAAGG 58.583 43.478 0.00 0.00 42.27 3.61
576 1381 3.769300 CCCCACCTTCTTAAAATCAAGGG 59.231 47.826 2.17 0.00 41.05 3.95
577 1382 3.769300 CCCACCTTCTTAAAATCAAGGGG 59.231 47.826 2.17 0.00 41.05 4.79
578 1383 4.510205 CCCACCTTCTTAAAATCAAGGGGA 60.510 45.833 0.52 0.00 42.59 4.81
579 1384 5.083821 CCACCTTCTTAAAATCAAGGGGAA 58.916 41.667 0.52 0.00 42.59 3.97
580 1385 5.542251 CCACCTTCTTAAAATCAAGGGGAAA 59.458 40.000 0.52 0.00 42.59 3.13
581 1386 6.042666 CCACCTTCTTAAAATCAAGGGGAAAA 59.957 38.462 0.52 0.00 42.59 2.29
582 1387 7.256655 CCACCTTCTTAAAATCAAGGGGAAAAT 60.257 37.037 0.52 0.00 42.59 1.82
583 1388 7.603784 CACCTTCTTAAAATCAAGGGGAAAATG 59.396 37.037 2.17 0.00 42.59 2.32
584 1389 7.512402 ACCTTCTTAAAATCAAGGGGAAAATGA 59.488 33.333 2.17 0.00 41.05 2.57
585 1390 8.542926 CCTTCTTAAAATCAAGGGGAAAATGAT 58.457 33.333 0.00 0.00 34.13 2.45
586 1391 9.948964 CTTCTTAAAATCAAGGGGAAAATGATT 57.051 29.630 0.00 0.00 43.62 2.57
620 1425 6.824305 AAAAGACAACCATAGGATGAAGTG 57.176 37.500 0.02 0.00 0.00 3.16
621 1426 4.494091 AGACAACCATAGGATGAAGTGG 57.506 45.455 0.02 0.00 37.74 4.00
622 1427 3.200825 AGACAACCATAGGATGAAGTGGG 59.799 47.826 0.02 0.00 36.05 4.61
623 1428 3.189606 ACAACCATAGGATGAAGTGGGA 58.810 45.455 0.02 0.00 36.05 4.37
624 1429 3.200825 ACAACCATAGGATGAAGTGGGAG 59.799 47.826 0.02 0.00 36.05 4.30
625 1430 1.771255 ACCATAGGATGAAGTGGGAGC 59.229 52.381 0.00 0.00 36.05 4.70
626 1431 1.770658 CCATAGGATGAAGTGGGAGCA 59.229 52.381 0.00 0.00 0.00 4.26
627 1432 2.486191 CCATAGGATGAAGTGGGAGCAC 60.486 54.545 0.00 0.00 0.00 4.40
628 1433 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
629 1434 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
630 1435 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
631 1436 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
632 1437 1.412710 GATGAAGTGGGAGCACGGATA 59.587 52.381 0.00 0.00 0.00 2.59
633 1438 0.824109 TGAAGTGGGAGCACGGATAG 59.176 55.000 0.00 0.00 0.00 2.08
634 1439 0.105039 GAAGTGGGAGCACGGATAGG 59.895 60.000 0.00 0.00 0.00 2.57
635 1440 0.325296 AAGTGGGAGCACGGATAGGA 60.325 55.000 0.00 0.00 0.00 2.94
636 1441 0.757188 AGTGGGAGCACGGATAGGAG 60.757 60.000 0.00 0.00 0.00 3.69
637 1442 2.134287 TGGGAGCACGGATAGGAGC 61.134 63.158 0.00 0.00 0.00 4.70
638 1443 2.134287 GGGAGCACGGATAGGAGCA 61.134 63.158 0.00 0.00 0.00 4.26
639 1444 1.476007 GGGAGCACGGATAGGAGCAT 61.476 60.000 0.00 0.00 0.00 3.79
640 1445 0.320247 GGAGCACGGATAGGAGCATG 60.320 60.000 0.00 0.00 0.00 4.06
641 1446 0.320247 GAGCACGGATAGGAGCATGG 60.320 60.000 0.00 0.00 0.00 3.66
642 1447 1.302033 GCACGGATAGGAGCATGGG 60.302 63.158 0.00 0.00 0.00 4.00
643 1448 1.758440 GCACGGATAGGAGCATGGGA 61.758 60.000 0.00 0.00 0.00 4.37
644 1449 0.758734 CACGGATAGGAGCATGGGAA 59.241 55.000 0.00 0.00 0.00 3.97
645 1450 1.051812 ACGGATAGGAGCATGGGAAG 58.948 55.000 0.00 0.00 0.00 3.46
646 1451 0.322975 CGGATAGGAGCATGGGAAGG 59.677 60.000 0.00 0.00 0.00 3.46
647 1452 0.695347 GGATAGGAGCATGGGAAGGG 59.305 60.000 0.00 0.00 0.00 3.95
648 1453 1.734655 GATAGGAGCATGGGAAGGGA 58.265 55.000 0.00 0.00 0.00 4.20
649 1454 1.627834 GATAGGAGCATGGGAAGGGAG 59.372 57.143 0.00 0.00 0.00 4.30
650 1455 1.056700 TAGGAGCATGGGAAGGGAGC 61.057 60.000 0.00 0.00 0.00 4.70
651 1456 2.683465 GGAGCATGGGAAGGGAGCA 61.683 63.158 0.00 0.00 0.00 4.26
652 1457 1.153005 GAGCATGGGAAGGGAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
653 1458 2.123982 GCATGGGAAGGGAGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
654 1459 2.123982 CATGGGAAGGGAGCAGGC 60.124 66.667 0.00 0.00 0.00 4.85
655 1460 2.614969 ATGGGAAGGGAGCAGGCA 60.615 61.111 0.00 0.00 0.00 4.75
656 1461 2.240918 ATGGGAAGGGAGCAGGCAA 61.241 57.895 0.00 0.00 0.00 4.52
657 1462 2.044551 GGGAAGGGAGCAGGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
658 1463 2.753446 GGAAGGGAGCAGGCAAGC 60.753 66.667 0.00 0.00 0.00 4.01
659 1464 2.753446 GAAGGGAGCAGGCAAGCC 60.753 66.667 2.02 2.02 34.23 4.35
660 1465 4.729918 AAGGGAGCAGGCAAGCCG 62.730 66.667 5.28 2.12 41.95 5.52
663 1468 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
664 1469 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
665 1470 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
693 1498 1.203313 GCGACGTGGAACCGAAAAG 59.797 57.895 0.11 0.00 0.00 2.27
794 1600 4.719997 CTCTTCGCGAGGTGATCC 57.280 61.111 18.33 0.00 36.06 3.36
828 1634 3.807538 AGCAGCTCATTTGCGCGG 61.808 61.111 8.83 0.00 45.98 6.46
833 1654 3.520862 CTCATTTGCGCGGGCCAT 61.521 61.111 22.70 11.14 38.85 4.40
834 1655 2.124529 TCATTTGCGCGGGCCATA 60.125 55.556 22.70 7.36 38.85 2.74
835 1656 2.026014 CATTTGCGCGGGCCATAC 59.974 61.111 22.70 0.00 38.85 2.39
836 1657 3.216292 ATTTGCGCGGGCCATACC 61.216 61.111 22.70 0.00 38.85 2.73
837 1658 3.714487 ATTTGCGCGGGCCATACCT 62.714 57.895 22.70 0.00 39.10 3.08
847 1668 4.108299 CCATACCTGCCGGCACCA 62.108 66.667 29.03 14.11 0.00 4.17
848 1669 2.192979 CATACCTGCCGGCACCAT 59.807 61.111 29.03 15.94 0.00 3.55
859 1680 2.609350 CCGGCACCATCAAAAGATTTG 58.391 47.619 0.00 0.00 0.00 2.32
897 1718 6.784227 GGATTAGTTAATTGCGAATTACGACG 59.216 38.462 0.00 0.00 45.77 5.12
898 1719 6.867799 TTAGTTAATTGCGAATTACGACGA 57.132 33.333 0.00 0.00 45.77 4.20
899 1720 5.122328 AGTTAATTGCGAATTACGACGAC 57.878 39.130 0.00 0.00 45.77 4.34
958 1791 8.487176 GCGATCTTTACTACTAGTAGTGTAGTC 58.513 40.741 35.52 26.31 44.93 2.59
962 1795 8.820831 TCTTTACTACTAGTAGTGTAGTCTGGT 58.179 37.037 35.52 15.17 44.93 4.00
968 1801 1.616865 GTAGTGTAGTCTGGTGGTGCA 59.383 52.381 0.00 0.00 0.00 4.57
972 1805 1.257743 GTAGTCTGGTGGTGCAGAGA 58.742 55.000 0.00 0.00 0.00 3.10
997 1830 2.993840 AGGAGCAGAGCAGCGTGA 60.994 61.111 2.11 0.00 40.15 4.35
1079 1952 6.127842 GGAGTTCTCGAGAGTAAGATCTGTTT 60.128 42.308 15.94 0.00 0.00 2.83
1080 1953 7.222000 AGTTCTCGAGAGTAAGATCTGTTTT 57.778 36.000 15.94 0.00 0.00 2.43
1081 1954 8.338072 AGTTCTCGAGAGTAAGATCTGTTTTA 57.662 34.615 15.94 0.00 0.00 1.52
1109 1982 0.818296 ACATACTCACCGGTGCTCTC 59.182 55.000 30.25 0.00 0.00 3.20
1113 1986 3.057547 CTCACCGGTGCTCTCCTCG 62.058 68.421 30.25 2.67 0.00 4.63
1114 1987 4.135153 CACCGGTGCTCTCCTCGG 62.135 72.222 24.02 0.00 46.95 4.63
1116 1989 4.135153 CCGGTGCTCTCCTCGGTG 62.135 72.222 0.00 0.00 37.92 4.94
1117 1990 3.062466 CGGTGCTCTCCTCGGTGA 61.062 66.667 0.00 0.00 0.00 4.02
1137 2123 3.866910 TGAAACCGTACTGACAGTGTTTC 59.133 43.478 27.26 27.26 38.00 2.78
1142 2128 3.247648 CCGTACTGACAGTGTTTCCAAAG 59.752 47.826 18.58 0.00 0.00 2.77
1157 2143 2.716424 TCCAAAGGTTCAGAGGTGGATT 59.284 45.455 0.00 0.00 30.27 3.01
1191 2177 0.894835 TTGGTGCGATGCTGACTCTA 59.105 50.000 0.00 0.00 0.00 2.43
1199 2185 3.159785 CGATGCTGACTCTAATCGATCG 58.840 50.000 9.36 9.36 43.48 3.69
1203 2189 3.189495 TGCTGACTCTAATCGATCGATCC 59.811 47.826 29.48 14.86 33.08 3.36
1204 2190 3.726486 GCTGACTCTAATCGATCGATCCG 60.726 52.174 29.48 21.95 33.08 4.18
1205 2191 3.400255 TGACTCTAATCGATCGATCCGT 58.600 45.455 29.48 21.76 33.08 4.69
1208 2194 4.066490 ACTCTAATCGATCGATCCGTCTT 58.934 43.478 29.48 16.60 33.08 3.01
1209 2195 4.083749 ACTCTAATCGATCGATCCGTCTTG 60.084 45.833 29.48 14.95 33.08 3.02
1210 2196 1.772182 AATCGATCGATCCGTCTTGC 58.228 50.000 29.48 0.00 33.08 4.01
1211 2197 0.955178 ATCGATCGATCCGTCTTGCT 59.045 50.000 24.60 0.00 0.00 3.91
1212 2198 0.029433 TCGATCGATCCGTCTTGCTG 59.971 55.000 19.51 2.52 0.00 4.41
1213 2199 1.543941 CGATCGATCCGTCTTGCTGC 61.544 60.000 19.51 0.00 0.00 5.25
1214 2200 1.218230 GATCGATCCGTCTTGCTGCC 61.218 60.000 14.76 0.00 0.00 4.85
1215 2201 1.680522 ATCGATCCGTCTTGCTGCCT 61.681 55.000 0.00 0.00 0.00 4.75
1233 2219 2.202987 GCTGCAGATGGACCTCCG 60.203 66.667 20.43 0.00 39.43 4.63
1258 2244 1.068748 CATCAACAGCACAGCAAGGAC 60.069 52.381 0.00 0.00 0.00 3.85
1260 2246 0.820891 CAACAGCACAGCAAGGACCT 60.821 55.000 0.00 0.00 0.00 3.85
1262 2248 2.282040 AGCACAGCAAGGACCTGC 60.282 61.111 0.00 0.82 42.97 4.85
1263 2249 2.595463 GCACAGCAAGGACCTGCA 60.595 61.111 15.46 0.00 45.18 4.41
1265 2251 2.282040 ACAGCAAGGACCTGCAGC 60.282 61.111 8.66 11.02 45.18 5.25
1266 2252 3.060615 CAGCAAGGACCTGCAGCC 61.061 66.667 8.66 5.06 45.18 4.85
1302 2288 1.802960 ACTGACAGAGGTACGTACACG 59.197 52.381 26.02 13.37 46.33 4.49
1313 2299 3.110027 CGTACACGTACACCATGCA 57.890 52.632 8.02 0.00 35.87 3.96
1314 2300 0.989164 CGTACACGTACACCATGCAG 59.011 55.000 8.02 0.00 35.87 4.41
1315 2301 1.667756 CGTACACGTACACCATGCAGT 60.668 52.381 8.02 0.00 35.87 4.40
1316 2302 1.724623 GTACACGTACACCATGCAGTG 59.275 52.381 4.64 4.64 43.65 3.66
1317 2303 1.227999 ACACGTACACCATGCAGTGC 61.228 55.000 8.58 8.58 41.67 4.40
1378 2382 6.761242 AGGTTTTCAGTCTTAATTTGTTTGGC 59.239 34.615 0.00 0.00 0.00 4.52
1409 2413 5.443431 GCAAAAACACACGAAATGAACGAAA 60.443 36.000 0.00 0.00 34.70 3.46
1454 2460 3.609853 CAAGGTGGAGATGAATCGGAAA 58.390 45.455 0.00 0.00 0.00 3.13
1460 2466 3.198872 GGAGATGAATCGGAAACTGTCC 58.801 50.000 0.00 0.00 43.90 4.02
1527 2543 1.202313 GGTGCATGTCTACCTCGACTC 60.202 57.143 0.00 0.00 35.00 3.36
1554 2570 2.730382 ACCGAACCCAACTGAACTTTT 58.270 42.857 0.00 0.00 0.00 2.27
1561 2577 3.447229 ACCCAACTGAACTTTTCACAAGG 59.553 43.478 0.00 0.00 35.46 3.61
1562 2578 3.181476 CCCAACTGAACTTTTCACAAGGG 60.181 47.826 0.00 0.00 35.46 3.95
1563 2579 3.699038 CCAACTGAACTTTTCACAAGGGA 59.301 43.478 0.00 0.00 35.46 4.20
1565 2581 4.983671 ACTGAACTTTTCACAAGGGAAC 57.016 40.909 0.00 0.00 35.46 3.62
1566 2582 4.600062 ACTGAACTTTTCACAAGGGAACT 58.400 39.130 0.00 0.00 37.73 3.01
1586 2608 7.597369 GGGAACTTGTTTGTATGTTTGGTAATC 59.403 37.037 0.00 0.00 0.00 1.75
1587 2609 7.597369 GGAACTTGTTTGTATGTTTGGTAATCC 59.403 37.037 0.00 0.00 0.00 3.01
1588 2610 7.833285 ACTTGTTTGTATGTTTGGTAATCCT 57.167 32.000 0.00 0.00 34.23 3.24
1589 2611 7.657336 ACTTGTTTGTATGTTTGGTAATCCTG 58.343 34.615 0.00 0.00 34.23 3.86
1590 2612 7.286775 ACTTGTTTGTATGTTTGGTAATCCTGT 59.713 33.333 0.00 0.00 34.23 4.00
1591 2613 7.209471 TGTTTGTATGTTTGGTAATCCTGTC 57.791 36.000 0.00 0.00 34.23 3.51
1592 2614 6.207810 TGTTTGTATGTTTGGTAATCCTGTCC 59.792 38.462 0.00 0.00 34.23 4.02
1593 2615 5.772393 TGTATGTTTGGTAATCCTGTCCT 57.228 39.130 0.00 0.00 34.23 3.85
1594 2616 6.877668 TGTATGTTTGGTAATCCTGTCCTA 57.122 37.500 0.00 0.00 34.23 2.94
1617 2652 2.750237 CTTAACGGGTGCAGGGCC 60.750 66.667 0.00 0.00 0.00 5.80
1635 2670 0.109086 CCGAGCACAAGATGTCGTCT 60.109 55.000 0.00 0.00 39.43 4.18
1653 2688 5.654650 GTCGTCTATCCTATCATGGGAGAAT 59.345 44.000 0.00 0.00 36.21 2.40
1707 2742 1.975680 ACACGGGAGGTATGTCAAACT 59.024 47.619 0.00 0.00 0.00 2.66
1708 2743 2.028385 ACACGGGAGGTATGTCAAACTC 60.028 50.000 0.00 0.00 0.00 3.01
1709 2744 2.233922 CACGGGAGGTATGTCAAACTCT 59.766 50.000 0.00 0.00 0.00 3.24
1757 2795 0.392998 CCCGGCACTTCAGTTAGCAT 60.393 55.000 0.00 0.00 0.00 3.79
1758 2796 1.453155 CCGGCACTTCAGTTAGCATT 58.547 50.000 0.00 0.00 0.00 3.56
1774 2812 8.865001 CAGTTAGCATTAAAGTTCAGTCTAGTC 58.135 37.037 0.00 0.00 0.00 2.59
1783 2821 9.524496 TTAAAGTTCAGTCTAGTCTATACACCA 57.476 33.333 0.00 0.00 0.00 4.17
1804 2860 1.153549 CCGAGTTAGCAGCAGGACC 60.154 63.158 0.00 0.00 0.00 4.46
1805 2861 1.608717 CCGAGTTAGCAGCAGGACCT 61.609 60.000 0.00 0.00 0.00 3.85
1966 3022 1.139654 CGGCAGGAGGAGATGATCAAA 59.860 52.381 0.00 0.00 0.00 2.69
1968 3024 3.007290 CGGCAGGAGGAGATGATCAAATA 59.993 47.826 0.00 0.00 0.00 1.40
2038 3096 1.420430 AGTTCCTCACCTGTTTCGGA 58.580 50.000 0.00 0.00 0.00 4.55
2045 3103 1.081892 CACCTGTTTCGGATGAGCAG 58.918 55.000 0.00 0.00 0.00 4.24
2049 3107 0.674581 TGTTTCGGATGAGCAGCCAG 60.675 55.000 5.55 0.00 36.48 4.85
2050 3108 1.746615 TTTCGGATGAGCAGCCAGC 60.747 57.895 5.55 0.00 46.19 4.85
2071 3129 2.924105 GCCAGCCAGCCACTGAAAC 61.924 63.158 0.00 0.00 37.32 2.78
2101 3163 6.868864 TCATAGTGAAAGTTGTGAAGTAGCTC 59.131 38.462 0.00 0.00 0.00 4.09
2103 3165 4.811557 AGTGAAAGTTGTGAAGTAGCTCAC 59.188 41.667 0.00 0.00 45.01 3.51
2112 3174 5.539048 TGTGAAGTAGCTCACCTAAAAGAC 58.461 41.667 0.00 0.00 44.30 3.01
2116 3178 1.797025 AGCTCACCTAAAAGACGTGC 58.203 50.000 0.00 0.00 0.00 5.34
2161 3224 8.040727 TCTCTTCTTTTGGAACATCGATCATAA 58.959 33.333 0.00 0.00 39.30 1.90
2185 3248 1.002366 GGATCGTGCACTGATGTGTC 58.998 55.000 22.77 12.62 45.44 3.67
2191 3376 2.541346 CGTGCACTGATGTGTCATATCC 59.459 50.000 16.19 0.00 45.44 2.59
2197 3382 2.893489 CTGATGTGTCATATCCGGGAGA 59.107 50.000 0.00 0.00 32.98 3.71
2200 3385 1.344438 TGTGTCATATCCGGGAGATGC 59.656 52.381 23.59 18.72 36.33 3.91
2211 3396 1.804372 CGGGAGATGCACTGCTAGTTC 60.804 57.143 1.98 0.00 37.14 3.01
2283 3468 1.950909 TGTTTCGGTTTGTGGGATGTC 59.049 47.619 0.00 0.00 0.00 3.06
2403 3588 5.297547 CCCTTCTTTTTAGGGCTTTCAAAC 58.702 41.667 0.00 0.00 45.59 2.93
2410 3595 4.561735 TTAGGGCTTTCAAACAAGTTCG 57.438 40.909 0.00 0.00 0.00 3.95
2411 3596 2.375146 AGGGCTTTCAAACAAGTTCGT 58.625 42.857 0.00 0.00 0.00 3.85
2412 3597 3.547746 AGGGCTTTCAAACAAGTTCGTA 58.452 40.909 0.00 0.00 0.00 3.43
2413 3598 3.564225 AGGGCTTTCAAACAAGTTCGTAG 59.436 43.478 0.00 0.00 0.00 3.51
2446 3631 4.273480 CAGGTTCAGACTTCACGAATTGTT 59.727 41.667 0.00 0.00 0.00 2.83
2624 3810 1.658673 GCCCATCCCGTACTACTCG 59.341 63.158 0.00 0.00 0.00 4.18
2654 3840 4.649218 AGAAGGCCCATGCGTATTAAAAAT 59.351 37.500 0.00 0.00 38.85 1.82
2655 3841 4.584327 AGGCCCATGCGTATTAAAAATC 57.416 40.909 0.00 0.00 38.85 2.17
2662 3848 7.069569 CCCATGCGTATTAAAAATCTAGAACG 58.930 38.462 0.00 0.29 0.00 3.95
2666 3852 6.019318 TGCGTATTAAAAATCTAGAACGAGGC 60.019 38.462 12.24 3.94 0.00 4.70
2704 3890 2.856222 TCGCATAGAGAGAGATGCTGA 58.144 47.619 5.42 2.32 45.12 4.26
2705 3891 3.217626 TCGCATAGAGAGAGATGCTGAA 58.782 45.455 5.42 0.00 45.12 3.02
2706 3892 3.252944 TCGCATAGAGAGAGATGCTGAAG 59.747 47.826 5.42 0.00 45.12 3.02
2707 3893 3.319755 GCATAGAGAGAGATGCTGAAGC 58.680 50.000 0.00 0.00 44.15 3.86
2708 3894 3.567530 CATAGAGAGAGATGCTGAAGCG 58.432 50.000 0.00 0.00 45.83 4.68
2709 3895 1.473258 AGAGAGAGATGCTGAAGCGT 58.527 50.000 0.00 0.00 45.83 5.07
2710 3896 2.649190 AGAGAGAGATGCTGAAGCGTA 58.351 47.619 0.00 0.00 45.83 4.42
2711 3897 2.357637 AGAGAGAGATGCTGAAGCGTAC 59.642 50.000 0.00 0.00 45.83 3.67
2712 3898 2.095461 AGAGAGATGCTGAAGCGTACA 58.905 47.619 0.00 0.00 45.83 2.90
2713 3899 2.159310 AGAGAGATGCTGAAGCGTACAC 60.159 50.000 0.00 0.00 45.83 2.90
2714 3900 1.546029 AGAGATGCTGAAGCGTACACA 59.454 47.619 0.00 0.00 45.83 3.72
2715 3901 1.656095 GAGATGCTGAAGCGTACACAC 59.344 52.381 0.00 0.00 45.83 3.82
2716 3902 0.721718 GATGCTGAAGCGTACACACC 59.278 55.000 0.00 0.00 45.83 4.16
2717 3903 0.034756 ATGCTGAAGCGTACACACCA 59.965 50.000 0.00 0.00 45.83 4.17
2718 3904 0.599991 TGCTGAAGCGTACACACCAG 60.600 55.000 0.00 0.00 45.83 4.00
2719 3905 1.291877 GCTGAAGCGTACACACCAGG 61.292 60.000 0.00 0.00 0.00 4.45
2720 3906 0.317160 CTGAAGCGTACACACCAGGA 59.683 55.000 0.00 0.00 0.00 3.86
2721 3907 0.032952 TGAAGCGTACACACCAGGAC 59.967 55.000 0.00 0.00 0.00 3.85
2722 3908 1.006571 AAGCGTACACACCAGGACG 60.007 57.895 0.00 0.00 38.32 4.79
2724 3910 2.337170 CGTACACACCAGGACGCA 59.663 61.111 0.00 0.00 0.00 5.24
2725 3911 1.080093 CGTACACACCAGGACGCAT 60.080 57.895 0.00 0.00 0.00 4.73
2726 3912 1.076533 CGTACACACCAGGACGCATC 61.077 60.000 0.00 0.00 0.00 3.91
2727 3913 1.076533 GTACACACCAGGACGCATCG 61.077 60.000 0.00 0.00 0.00 3.84
2728 3914 2.220615 TACACACCAGGACGCATCGG 62.221 60.000 0.00 0.00 0.00 4.18
2729 3915 4.760047 ACACCAGGACGCATCGGC 62.760 66.667 0.00 0.00 0.00 5.54
2730 3916 4.457496 CACCAGGACGCATCGGCT 62.457 66.667 0.00 0.00 38.10 5.52
2788 3974 4.742659 GCATCCTCAGTTCGATTTCTACTC 59.257 45.833 0.00 0.00 0.00 2.59
2828 6163 2.436542 TGTTCGTCTTTCTTCCTCCCAA 59.563 45.455 0.00 0.00 0.00 4.12
2870 6205 6.255887 CGTTTCTGATTCTATACTTGTCCCAC 59.744 42.308 0.00 0.00 0.00 4.61
2876 6211 4.895668 TCTATACTTGTCCCACGGTTTT 57.104 40.909 0.00 0.00 0.00 2.43
2931 6266 3.466791 ATCGGATCGCAAGCCCTGG 62.467 63.158 0.00 0.00 37.18 4.45
2954 6289 4.273480 GTGTCCAGGTGATAATTCATTCCG 59.727 45.833 0.00 0.00 33.56 4.30
2956 6291 2.554032 CCAGGTGATAATTCATTCCGGC 59.446 50.000 0.00 0.00 33.56 6.13
2995 6330 5.282055 CCAGAGGCAGATTACAGATTACA 57.718 43.478 0.00 0.00 0.00 2.41
2996 6331 5.295950 CCAGAGGCAGATTACAGATTACAG 58.704 45.833 0.00 0.00 0.00 2.74
2997 6332 5.295950 CAGAGGCAGATTACAGATTACAGG 58.704 45.833 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 1077 3.742369 CACAACAAAATTGCCATGGACTC 59.258 43.478 18.40 0.00 0.00 3.36
512 1317 1.859427 CGAGAACTCCCGACCGTTCA 61.859 60.000 11.37 0.00 41.40 3.18
528 1333 2.093783 GCCTTATTTTGTGGACGTCGAG 59.906 50.000 9.92 0.00 0.00 4.04
539 1344 2.289382 GGTGGGGTTGTGCCTTATTTTG 60.289 50.000 0.00 0.00 37.43 2.44
542 1347 0.783850 AGGTGGGGTTGTGCCTTATT 59.216 50.000 0.00 0.00 37.43 1.40
543 1348 0.783850 AAGGTGGGGTTGTGCCTTAT 59.216 50.000 0.00 0.00 39.33 1.73
544 1349 0.111639 GAAGGTGGGGTTGTGCCTTA 59.888 55.000 0.00 0.00 40.98 2.69
545 1350 1.152546 GAAGGTGGGGTTGTGCCTT 60.153 57.895 0.00 0.00 43.30 4.35
546 1351 1.655114 AAGAAGGTGGGGTTGTGCCT 61.655 55.000 0.00 0.00 37.43 4.75
547 1352 0.111639 TAAGAAGGTGGGGTTGTGCC 59.888 55.000 0.00 0.00 0.00 5.01
548 1353 1.989706 TTAAGAAGGTGGGGTTGTGC 58.010 50.000 0.00 0.00 0.00 4.57
549 1354 4.586841 TGATTTTAAGAAGGTGGGGTTGTG 59.413 41.667 0.00 0.00 0.00 3.33
550 1355 4.810345 TGATTTTAAGAAGGTGGGGTTGT 58.190 39.130 0.00 0.00 0.00 3.32
551 1356 5.279456 CCTTGATTTTAAGAAGGTGGGGTTG 60.279 44.000 0.00 0.00 32.94 3.77
552 1357 4.838423 CCTTGATTTTAAGAAGGTGGGGTT 59.162 41.667 0.00 0.00 32.94 4.11
553 1358 4.416516 CCTTGATTTTAAGAAGGTGGGGT 58.583 43.478 0.00 0.00 32.94 4.95
554 1359 3.769300 CCCTTGATTTTAAGAAGGTGGGG 59.231 47.826 0.00 0.00 35.41 4.96
555 1360 3.769300 CCCCTTGATTTTAAGAAGGTGGG 59.231 47.826 0.00 0.00 35.41 4.61
556 1361 4.672899 TCCCCTTGATTTTAAGAAGGTGG 58.327 43.478 0.00 0.00 35.41 4.61
557 1362 6.664428 TTTCCCCTTGATTTTAAGAAGGTG 57.336 37.500 0.00 0.00 35.41 4.00
558 1363 7.512402 TCATTTTCCCCTTGATTTTAAGAAGGT 59.488 33.333 0.00 0.00 35.41 3.50
559 1364 7.906327 TCATTTTCCCCTTGATTTTAAGAAGG 58.094 34.615 0.00 0.00 36.73 3.46
560 1365 9.948964 AATCATTTTCCCCTTGATTTTAAGAAG 57.051 29.630 0.00 0.00 36.88 2.85
596 1401 6.209391 CCACTTCATCCTATGGTTGTCTTTTT 59.791 38.462 0.00 0.00 0.00 1.94
597 1402 5.711976 CCACTTCATCCTATGGTTGTCTTTT 59.288 40.000 0.00 0.00 0.00 2.27
598 1403 5.256474 CCACTTCATCCTATGGTTGTCTTT 58.744 41.667 0.00 0.00 0.00 2.52
599 1404 4.324563 CCCACTTCATCCTATGGTTGTCTT 60.325 45.833 0.00 0.00 0.00 3.01
600 1405 3.200825 CCCACTTCATCCTATGGTTGTCT 59.799 47.826 0.00 0.00 0.00 3.41
601 1406 3.199946 TCCCACTTCATCCTATGGTTGTC 59.800 47.826 0.00 0.00 0.00 3.18
602 1407 3.189606 TCCCACTTCATCCTATGGTTGT 58.810 45.455 0.00 0.00 0.00 3.32
603 1408 3.813443 CTCCCACTTCATCCTATGGTTG 58.187 50.000 0.00 0.00 0.00 3.77
604 1409 2.173569 GCTCCCACTTCATCCTATGGTT 59.826 50.000 0.00 0.00 0.00 3.67
605 1410 1.771255 GCTCCCACTTCATCCTATGGT 59.229 52.381 0.00 0.00 0.00 3.55
606 1411 1.770658 TGCTCCCACTTCATCCTATGG 59.229 52.381 0.00 0.00 0.00 2.74
607 1412 2.804572 CGTGCTCCCACTTCATCCTATG 60.805 54.545 0.00 0.00 39.86 2.23
608 1413 1.414181 CGTGCTCCCACTTCATCCTAT 59.586 52.381 0.00 0.00 39.86 2.57
609 1414 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
610 1415 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
611 1416 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
612 1417 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
613 1418 1.414181 CTATCCGTGCTCCCACTTCAT 59.586 52.381 0.00 0.00 39.86 2.57
614 1419 0.824109 CTATCCGTGCTCCCACTTCA 59.176 55.000 0.00 0.00 39.86 3.02
615 1420 0.105039 CCTATCCGTGCTCCCACTTC 59.895 60.000 0.00 0.00 39.86 3.01
616 1421 0.325296 TCCTATCCGTGCTCCCACTT 60.325 55.000 0.00 0.00 39.86 3.16
617 1422 0.757188 CTCCTATCCGTGCTCCCACT 60.757 60.000 0.00 0.00 39.86 4.00
618 1423 1.742768 CTCCTATCCGTGCTCCCAC 59.257 63.158 0.00 0.00 38.62 4.61
619 1424 2.134287 GCTCCTATCCGTGCTCCCA 61.134 63.158 0.00 0.00 0.00 4.37
620 1425 1.476007 ATGCTCCTATCCGTGCTCCC 61.476 60.000 0.00 0.00 0.00 4.30
621 1426 0.320247 CATGCTCCTATCCGTGCTCC 60.320 60.000 0.00 0.00 0.00 4.70
622 1427 0.320247 CCATGCTCCTATCCGTGCTC 60.320 60.000 0.00 0.00 0.00 4.26
623 1428 1.750930 CCATGCTCCTATCCGTGCT 59.249 57.895 0.00 0.00 0.00 4.40
624 1429 1.302033 CCCATGCTCCTATCCGTGC 60.302 63.158 0.00 0.00 0.00 5.34
625 1430 0.758734 TTCCCATGCTCCTATCCGTG 59.241 55.000 0.00 0.00 0.00 4.94
626 1431 1.051812 CTTCCCATGCTCCTATCCGT 58.948 55.000 0.00 0.00 0.00 4.69
627 1432 0.322975 CCTTCCCATGCTCCTATCCG 59.677 60.000 0.00 0.00 0.00 4.18
628 1433 0.695347 CCCTTCCCATGCTCCTATCC 59.305 60.000 0.00 0.00 0.00 2.59
629 1434 1.627834 CTCCCTTCCCATGCTCCTATC 59.372 57.143 0.00 0.00 0.00 2.08
630 1435 1.739750 CTCCCTTCCCATGCTCCTAT 58.260 55.000 0.00 0.00 0.00 2.57
631 1436 1.056700 GCTCCCTTCCCATGCTCCTA 61.057 60.000 0.00 0.00 0.00 2.94
632 1437 2.381941 GCTCCCTTCCCATGCTCCT 61.382 63.158 0.00 0.00 0.00 3.69
633 1438 2.194326 GCTCCCTTCCCATGCTCC 59.806 66.667 0.00 0.00 0.00 4.70
634 1439 1.153005 CTGCTCCCTTCCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
635 1440 2.687610 CCTGCTCCCTTCCCATGCT 61.688 63.158 0.00 0.00 0.00 3.79
636 1441 2.123982 CCTGCTCCCTTCCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
637 1442 2.123982 GCCTGCTCCCTTCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
638 1443 2.220786 CTTGCCTGCTCCCTTCCCAT 62.221 60.000 0.00 0.00 0.00 4.00
639 1444 2.858476 TTGCCTGCTCCCTTCCCA 60.858 61.111 0.00 0.00 0.00 4.37
640 1445 2.044551 CTTGCCTGCTCCCTTCCC 60.045 66.667 0.00 0.00 0.00 3.97
641 1446 2.753446 GCTTGCCTGCTCCCTTCC 60.753 66.667 0.00 0.00 0.00 3.46
642 1447 2.753446 GGCTTGCCTGCTCCCTTC 60.753 66.667 4.11 0.00 0.00 3.46
643 1448 4.729918 CGGCTTGCCTGCTCCCTT 62.730 66.667 10.12 0.00 0.00 3.95
646 1451 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
647 1452 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
648 1453 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
666 1471 4.849329 CCACGTCGCCGTCTAGCC 62.849 72.222 0.00 0.00 46.28 3.93
667 1472 3.332493 TTCCACGTCGCCGTCTAGC 62.332 63.158 0.00 0.00 46.28 3.42
668 1473 1.513586 GTTCCACGTCGCCGTCTAG 60.514 63.158 0.00 0.00 46.28 2.43
669 1474 2.562912 GTTCCACGTCGCCGTCTA 59.437 61.111 0.00 0.00 46.28 2.59
670 1475 4.353437 GGTTCCACGTCGCCGTCT 62.353 66.667 0.00 0.00 46.28 4.18
674 1479 2.166584 CTTTTCGGTTCCACGTCGCC 62.167 60.000 0.00 0.00 34.94 5.54
675 1480 1.203313 CTTTTCGGTTCCACGTCGC 59.797 57.895 0.00 0.00 34.94 5.19
676 1481 1.562575 CCCTTTTCGGTTCCACGTCG 61.563 60.000 0.00 0.00 34.94 5.12
680 1485 2.622962 CCGCCCTTTTCGGTTCCAC 61.623 63.158 0.00 0.00 41.85 4.02
709 1514 1.296715 GGATGAGAGGTGCCACGTT 59.703 57.895 0.00 0.00 0.00 3.99
759 1564 4.112341 GCCCGAGCGACACGTACT 62.112 66.667 0.00 0.00 0.00 2.73
788 1594 1.268999 CGACTAGCAGAGCAGGATCAC 60.269 57.143 0.00 0.00 0.00 3.06
794 1600 2.888111 TGCCGACTAGCAGAGCAG 59.112 61.111 0.00 0.00 38.00 4.24
833 1654 2.130821 TTTGATGGTGCCGGCAGGTA 62.131 55.000 33.73 19.81 40.50 3.08
834 1655 2.992817 TTTTGATGGTGCCGGCAGGT 62.993 55.000 33.73 19.28 40.50 4.00
835 1656 2.216750 CTTTTGATGGTGCCGGCAGG 62.217 60.000 33.73 0.53 41.62 4.85
836 1657 1.213537 CTTTTGATGGTGCCGGCAG 59.786 57.895 33.73 11.27 0.00 4.85
837 1658 0.611618 ATCTTTTGATGGTGCCGGCA 60.612 50.000 29.03 29.03 37.85 5.69
838 1659 0.532115 AATCTTTTGATGGTGCCGGC 59.468 50.000 22.73 22.73 39.48 6.13
839 1660 2.609350 CAAATCTTTTGATGGTGCCGG 58.391 47.619 0.00 0.00 39.48 6.13
840 1661 2.230992 TCCAAATCTTTTGATGGTGCCG 59.769 45.455 1.65 0.00 39.48 5.69
841 1662 3.959535 TCCAAATCTTTTGATGGTGCC 57.040 42.857 1.65 0.00 39.48 5.01
842 1663 3.681417 GCTTCCAAATCTTTTGATGGTGC 59.319 43.478 1.65 0.00 39.48 5.01
843 1664 4.248058 GGCTTCCAAATCTTTTGATGGTG 58.752 43.478 1.65 0.00 39.48 4.17
844 1665 3.056607 CGGCTTCCAAATCTTTTGATGGT 60.057 43.478 1.65 0.00 39.48 3.55
845 1666 3.514645 CGGCTTCCAAATCTTTTGATGG 58.485 45.455 1.65 0.00 39.48 3.51
846 1667 2.925563 GCGGCTTCCAAATCTTTTGATG 59.074 45.455 1.65 0.00 39.48 3.07
847 1668 2.827921 AGCGGCTTCCAAATCTTTTGAT 59.172 40.909 0.00 0.00 41.73 2.57
848 1669 2.238521 AGCGGCTTCCAAATCTTTTGA 58.761 42.857 0.00 0.00 0.00 2.69
859 1680 2.092323 ACTAATCCAAAAGCGGCTTCC 58.908 47.619 16.70 0.00 0.00 3.46
897 1718 3.503748 CCTGTCAAAATCCAACCTGAGTC 59.496 47.826 0.00 0.00 0.00 3.36
898 1719 3.490348 CCTGTCAAAATCCAACCTGAGT 58.510 45.455 0.00 0.00 0.00 3.41
899 1720 2.821969 CCCTGTCAAAATCCAACCTGAG 59.178 50.000 0.00 0.00 0.00 3.35
958 1791 1.162698 CACAATCTCTGCACCACCAG 58.837 55.000 0.00 0.00 0.00 4.00
960 1793 1.878775 GCACAATCTCTGCACCACC 59.121 57.895 0.00 0.00 34.56 4.61
962 1795 0.671472 CTCGCACAATCTCTGCACCA 60.671 55.000 0.00 0.00 34.00 4.17
968 1801 0.175302 CTGCTCCTCGCACAATCTCT 59.825 55.000 0.00 0.00 45.47 3.10
972 1805 1.449246 GCTCTGCTCCTCGCACAAT 60.449 57.895 0.00 0.00 45.47 2.71
992 1825 2.125106 GGGTCTCCATGGTCACGC 60.125 66.667 12.58 13.55 0.00 5.34
997 1830 2.304056 CCTGCTGGGTCTCCATGGT 61.304 63.158 12.58 0.00 43.11 3.55
1052 1925 2.630158 TCTTACTCTCGAGAACTCCGG 58.370 52.381 17.36 6.07 0.00 5.14
1085 1958 2.147958 GCACCGGTGAGTATGTGAAAA 58.852 47.619 38.30 0.00 0.00 2.29
1113 1986 2.132762 CACTGTCAGTACGGTTTCACC 58.867 52.381 4.85 0.00 42.83 4.02
1114 1987 2.817901 ACACTGTCAGTACGGTTTCAC 58.182 47.619 4.85 0.00 42.83 3.18
1116 1989 3.246936 GGAAACACTGTCAGTACGGTTTC 59.753 47.826 25.26 25.26 42.83 2.78
1117 1990 3.200483 GGAAACACTGTCAGTACGGTTT 58.800 45.455 15.92 15.92 42.83 3.27
1122 2108 4.196971 ACCTTTGGAAACACTGTCAGTAC 58.803 43.478 4.85 0.00 42.67 2.73
1125 2111 3.694072 TGAACCTTTGGAAACACTGTCAG 59.306 43.478 0.00 0.00 42.67 3.51
1129 2115 3.316308 CCTCTGAACCTTTGGAAACACTG 59.684 47.826 0.00 0.00 42.67 3.66
1137 2123 2.887151 ATCCACCTCTGAACCTTTGG 57.113 50.000 0.00 0.00 0.00 3.28
1142 2128 4.508662 CAAGAGTAATCCACCTCTGAACC 58.491 47.826 0.00 0.00 0.00 3.62
1157 2143 2.813754 GCACCAAACTGATGCAAGAGTA 59.186 45.455 0.00 0.00 36.72 2.59
1191 2177 1.338337 AGCAAGACGGATCGATCGATT 59.662 47.619 29.89 15.85 34.60 3.34
1199 2185 2.467826 GCAGGCAGCAAGACGGATC 61.468 63.158 0.00 0.00 44.79 3.36
1212 2198 2.827642 GGTCCATCTGCAGCAGGC 60.828 66.667 22.62 9.07 45.13 4.85
1213 2199 1.153208 GAGGTCCATCTGCAGCAGG 60.153 63.158 22.62 13.32 31.51 4.85
1214 2200 1.153208 GGAGGTCCATCTGCAGCAG 60.153 63.158 17.10 17.10 35.64 4.24
1215 2201 2.993008 GGAGGTCCATCTGCAGCA 59.007 61.111 9.47 0.00 35.64 4.41
1233 2219 3.332493 CTGTGCTGTTGATGGCGCC 62.332 63.158 22.73 22.73 38.06 6.53
1240 2226 0.819259 GGTCCTTGCTGTGCTGTTGA 60.819 55.000 0.00 0.00 0.00 3.18
1302 2288 0.680921 ATGGGCACTGCATGGTGTAC 60.681 55.000 2.82 2.57 39.21 2.90
1303 2289 0.394216 GATGGGCACTGCATGGTGTA 60.394 55.000 2.82 0.00 39.21 2.90
1304 2290 1.679977 GATGGGCACTGCATGGTGT 60.680 57.895 2.82 0.00 39.21 4.16
1305 2291 1.663379 CTGATGGGCACTGCATGGTG 61.663 60.000 2.82 1.82 39.91 4.17
1306 2292 1.379443 CTGATGGGCACTGCATGGT 60.379 57.895 2.82 0.00 0.00 3.55
1307 2293 2.782222 GCTGATGGGCACTGCATGG 61.782 63.158 2.82 0.00 33.57 3.66
1309 2295 1.753078 CAGCTGATGGGCACTGCAT 60.753 57.895 8.42 0.00 35.29 3.96
1310 2296 2.360726 CAGCTGATGGGCACTGCA 60.361 61.111 8.42 0.00 35.29 4.41
1311 2297 3.823330 GCAGCTGATGGGCACTGC 61.823 66.667 20.43 0.00 41.15 4.40
1312 2298 1.654954 GAAGCAGCTGATGGGCACTG 61.655 60.000 20.43 0.00 34.17 3.66
1313 2299 1.378250 GAAGCAGCTGATGGGCACT 60.378 57.895 20.43 0.00 34.17 4.40
1314 2300 1.246056 TTGAAGCAGCTGATGGGCAC 61.246 55.000 20.43 2.23 34.17 5.01
1315 2301 0.963856 CTTGAAGCAGCTGATGGGCA 60.964 55.000 20.43 8.18 34.17 5.36
1316 2302 0.964358 ACTTGAAGCAGCTGATGGGC 60.964 55.000 20.43 5.28 0.00 5.36
1317 2303 1.542492 AACTTGAAGCAGCTGATGGG 58.458 50.000 20.43 5.05 0.00 4.00
1378 2382 5.386810 TTTCGTGTGTTTTTGCATTCATG 57.613 34.783 0.00 0.00 0.00 3.07
1454 2460 0.690762 ACGCCTTAACCATGGACAGT 59.309 50.000 21.47 5.39 0.00 3.55
1460 2466 0.748005 CCTCCCACGCCTTAACCATG 60.748 60.000 0.00 0.00 0.00 3.66
1527 2543 1.333619 CAGTTGGGTTCGGTTCAGTTG 59.666 52.381 0.00 0.00 0.00 3.16
1561 2577 7.597369 GGATTACCAAACATACAAACAAGTTCC 59.403 37.037 0.00 0.00 35.97 3.62
1562 2578 8.357402 AGGATTACCAAACATACAAACAAGTTC 58.643 33.333 0.00 0.00 38.94 3.01
1563 2579 8.141268 CAGGATTACCAAACATACAAACAAGTT 58.859 33.333 0.00 0.00 38.94 2.66
1565 2581 7.657336 ACAGGATTACCAAACATACAAACAAG 58.343 34.615 0.00 0.00 38.94 3.16
1566 2582 7.255660 GGACAGGATTACCAAACATACAAACAA 60.256 37.037 0.00 0.00 38.94 2.83
1569 2591 6.548321 AGGACAGGATTACCAAACATACAAA 58.452 36.000 0.00 0.00 38.94 2.83
1570 2592 6.134535 AGGACAGGATTACCAAACATACAA 57.865 37.500 0.00 0.00 38.94 2.41
1573 2595 5.968167 AGGTAGGACAGGATTACCAAACATA 59.032 40.000 3.08 0.00 39.42 2.29
1576 2598 4.838904 AGGTAGGACAGGATTACCAAAC 57.161 45.455 3.08 0.00 39.42 2.93
1586 2608 2.692041 CCGTTAAGGTAGGTAGGACAGG 59.308 54.545 0.00 0.00 34.51 4.00
1587 2609 2.692041 CCCGTTAAGGTAGGTAGGACAG 59.308 54.545 0.00 0.00 38.74 3.51
1588 2610 2.042979 ACCCGTTAAGGTAGGTAGGACA 59.957 50.000 0.00 0.00 38.79 4.02
1589 2611 2.428530 CACCCGTTAAGGTAGGTAGGAC 59.571 54.545 0.00 0.00 38.39 3.85
1590 2612 2.738743 CACCCGTTAAGGTAGGTAGGA 58.261 52.381 0.00 0.00 38.39 2.94
1591 2613 1.137675 GCACCCGTTAAGGTAGGTAGG 59.862 57.143 0.00 0.00 38.39 3.18
1592 2614 1.826720 TGCACCCGTTAAGGTAGGTAG 59.173 52.381 0.00 0.00 38.39 3.18
1593 2615 1.826720 CTGCACCCGTTAAGGTAGGTA 59.173 52.381 0.00 0.00 38.39 3.08
1594 2616 0.611714 CTGCACCCGTTAAGGTAGGT 59.388 55.000 0.00 0.00 38.39 3.08
1617 2652 2.544480 TAGACGACATCTTGTGCTCG 57.456 50.000 0.00 0.00 39.04 5.03
1635 2670 7.487338 TCTTGGTATTCTCCCATGATAGGATA 58.513 38.462 0.00 0.00 32.83 2.59
1653 2688 3.305177 GACCGCGGCCTTCTTGGTA 62.305 63.158 28.58 0.00 38.35 3.25
1707 2742 1.687123 GGCGGGCTTCAGAGTTATAGA 59.313 52.381 0.00 0.00 0.00 1.98
1708 2743 1.689273 AGGCGGGCTTCAGAGTTATAG 59.311 52.381 0.00 0.00 0.00 1.31
1709 2744 1.789523 AGGCGGGCTTCAGAGTTATA 58.210 50.000 0.00 0.00 0.00 0.98
1757 2795 9.524496 TGGTGTATAGACTAGACTGAACTTTAA 57.476 33.333 8.62 0.00 0.00 1.52
1758 2796 9.696572 ATGGTGTATAGACTAGACTGAACTTTA 57.303 33.333 8.62 0.00 0.00 1.85
1774 2812 5.700722 TGCTAACTCGGTATGGTGTATAG 57.299 43.478 0.00 0.00 0.00 1.31
1776 2814 3.243771 GCTGCTAACTCGGTATGGTGTAT 60.244 47.826 0.00 0.00 0.00 2.29
1779 2817 1.134818 TGCTGCTAACTCGGTATGGTG 60.135 52.381 0.00 0.00 0.00 4.17
1782 2820 1.409064 TCCTGCTGCTAACTCGGTATG 59.591 52.381 0.00 0.00 0.00 2.39
1783 2821 1.409427 GTCCTGCTGCTAACTCGGTAT 59.591 52.381 0.00 0.00 0.00 2.73
1811 2867 3.826157 TCGAATTTTTGAGGAGCATGGTT 59.174 39.130 0.00 0.00 0.00 3.67
1827 2883 3.128242 CAGCTTCTCCTGCAAATCGAATT 59.872 43.478 0.00 0.00 0.00 2.17
1877 2933 2.511600 GACCCGGTTCCGCATCTG 60.512 66.667 0.00 0.00 0.00 2.90
1897 2953 0.816825 CCGCCTCCTTGTGGATCATG 60.817 60.000 0.00 0.00 42.29 3.07
1966 3022 3.537874 GCCGCCGTCTCCTGGTAT 61.538 66.667 0.00 0.00 0.00 2.73
2038 3096 4.816984 GGCTGGCTGGCTGCTCAT 62.817 66.667 27.06 0.00 42.39 2.90
2051 3109 3.855503 TTCAGTGGCTGGCTGGCTG 62.856 63.158 18.27 9.73 42.34 4.85
2052 3110 3.137385 TTTCAGTGGCTGGCTGGCT 62.137 57.895 18.27 0.00 42.34 4.75
2053 3111 2.598394 TTTCAGTGGCTGGCTGGC 60.598 61.111 11.09 11.09 42.18 4.85
2054 3112 0.896940 ATGTTTCAGTGGCTGGCTGG 60.897 55.000 2.00 0.00 34.89 4.85
2055 3113 1.825090 TATGTTTCAGTGGCTGGCTG 58.175 50.000 2.00 0.00 35.43 4.85
2056 3114 2.584835 TTATGTTTCAGTGGCTGGCT 57.415 45.000 2.00 0.00 31.51 4.75
2057 3115 2.754552 TGATTATGTTTCAGTGGCTGGC 59.245 45.455 0.00 0.00 31.51 4.85
2058 3116 5.824624 ACTATGATTATGTTTCAGTGGCTGG 59.175 40.000 0.00 0.00 31.51 4.85
2059 3117 6.539826 TCACTATGATTATGTTTCAGTGGCTG 59.460 38.462 0.00 0.00 0.00 4.85
2060 3118 6.653020 TCACTATGATTATGTTTCAGTGGCT 58.347 36.000 0.00 0.00 0.00 4.75
2061 3119 6.925610 TCACTATGATTATGTTTCAGTGGC 57.074 37.500 0.00 0.00 0.00 5.01
2062 3120 8.950210 ACTTTCACTATGATTATGTTTCAGTGG 58.050 33.333 0.00 0.00 0.00 4.00
2101 3163 3.057174 AGAGAGAGCACGTCTTTTAGGTG 60.057 47.826 0.00 0.00 44.94 4.00
2103 3165 3.859411 AGAGAGAGCACGTCTTTTAGG 57.141 47.619 0.00 0.00 34.71 2.69
2112 3174 1.378531 AGAGCAGTAGAGAGAGCACG 58.621 55.000 0.00 0.00 0.00 5.34
2116 3178 3.282021 AGAGCAAGAGCAGTAGAGAGAG 58.718 50.000 0.00 0.00 45.49 3.20
2161 3224 0.251354 ATCAGTGCACGATCCAAGCT 59.749 50.000 12.01 0.00 0.00 3.74
2185 3248 1.943046 GCAGTGCATCTCCCGGATATG 60.943 57.143 11.09 8.18 32.64 1.78
2191 3376 0.176680 AACTAGCAGTGCATCTCCCG 59.823 55.000 19.20 0.00 0.00 5.14
2228 3413 4.671964 GCAACATTATGTATGTGCATCACG 59.328 41.667 13.60 0.00 46.75 4.35
2253 3438 1.375551 AACCGAAACAGAACAAGCGT 58.624 45.000 0.00 0.00 0.00 5.07
2283 3468 5.697633 ACCGTTTACTTACACACCTTACATG 59.302 40.000 0.00 0.00 0.00 3.21
2401 3586 0.107831 TGCCTGCCTACGAACTTGTT 59.892 50.000 0.00 0.00 0.00 2.83
2403 3588 1.021390 CCTGCCTGCCTACGAACTTG 61.021 60.000 0.00 0.00 0.00 3.16
2410 3595 3.273788 AACCTGCCTGCCTGCCTAC 62.274 63.158 0.00 0.00 0.00 3.18
2411 3596 2.935481 AACCTGCCTGCCTGCCTA 60.935 61.111 0.00 0.00 0.00 3.93
2412 3597 4.357279 GAACCTGCCTGCCTGCCT 62.357 66.667 0.00 0.00 0.00 4.75
2413 3598 4.666253 TGAACCTGCCTGCCTGCC 62.666 66.667 0.00 0.00 0.00 4.85
2624 3810 1.334869 CGCATGGGCCTTCTGAATTAC 59.665 52.381 4.53 0.00 36.38 1.89
2654 3840 2.058595 GCCTGGGCCTCGTTCTAGA 61.059 63.158 4.53 0.00 34.56 2.43
2655 3841 2.022240 GAGCCTGGGCCTCGTTCTAG 62.022 65.000 4.53 0.00 43.17 2.43
2662 3848 1.000396 AAACATGAGCCTGGGCCTC 60.000 57.895 4.53 6.13 43.17 4.70
2666 3852 1.457346 GAGTCAAACATGAGCCTGGG 58.543 55.000 0.00 0.00 0.00 4.45
2697 3883 0.721718 GGTGTGTACGCTTCAGCATC 59.278 55.000 8.10 0.00 42.21 3.91
2698 3884 0.034756 TGGTGTGTACGCTTCAGCAT 59.965 50.000 8.10 0.00 42.21 3.79
2699 3885 0.599991 CTGGTGTGTACGCTTCAGCA 60.600 55.000 8.10 9.32 42.21 4.41
2700 3886 1.291877 CCTGGTGTGTACGCTTCAGC 61.292 60.000 17.90 11.12 37.78 4.26
2701 3887 0.317160 TCCTGGTGTGTACGCTTCAG 59.683 55.000 16.96 16.96 0.00 3.02
2702 3888 0.032952 GTCCTGGTGTGTACGCTTCA 59.967 55.000 8.10 5.20 0.00 3.02
2703 3889 1.007336 CGTCCTGGTGTGTACGCTTC 61.007 60.000 8.10 1.11 0.00 3.86
2704 3890 1.006571 CGTCCTGGTGTGTACGCTT 60.007 57.895 8.10 0.00 0.00 4.68
2705 3891 2.649034 CGTCCTGGTGTGTACGCT 59.351 61.111 8.10 0.00 0.00 5.07
2707 3893 1.076533 GATGCGTCCTGGTGTGTACG 61.077 60.000 0.00 0.94 38.34 3.67
2708 3894 1.076533 CGATGCGTCCTGGTGTGTAC 61.077 60.000 0.00 0.00 0.00 2.90
2709 3895 1.214325 CGATGCGTCCTGGTGTGTA 59.786 57.895 0.00 0.00 0.00 2.90
2710 3896 2.048222 CGATGCGTCCTGGTGTGT 60.048 61.111 0.00 0.00 0.00 3.72
2711 3897 2.815211 CCGATGCGTCCTGGTGTG 60.815 66.667 0.00 0.00 0.00 3.82
2712 3898 4.760047 GCCGATGCGTCCTGGTGT 62.760 66.667 0.00 0.00 0.00 4.16
2713 3899 3.958147 AAGCCGATGCGTCCTGGTG 62.958 63.158 0.00 0.00 44.33 4.17
2714 3900 3.706373 AAGCCGATGCGTCCTGGT 61.706 61.111 0.00 0.00 44.33 4.00
2715 3901 3.197790 CAAGCCGATGCGTCCTGG 61.198 66.667 0.00 0.00 44.33 4.45
2716 3902 3.197790 CCAAGCCGATGCGTCCTG 61.198 66.667 0.00 0.00 44.33 3.86
2718 3904 3.733344 TAGCCAAGCCGATGCGTCC 62.733 63.158 0.00 0.00 44.33 4.79
2719 3905 1.366111 TTTAGCCAAGCCGATGCGTC 61.366 55.000 0.00 0.00 44.33 5.19
2720 3906 1.369091 CTTTAGCCAAGCCGATGCGT 61.369 55.000 0.00 0.00 44.33 5.24
2721 3907 1.089481 TCTTTAGCCAAGCCGATGCG 61.089 55.000 0.00 0.00 44.33 4.73
2722 3908 1.094785 TTCTTTAGCCAAGCCGATGC 58.905 50.000 0.00 0.00 37.95 3.91
2723 3909 3.440173 TCTTTTCTTTAGCCAAGCCGATG 59.560 43.478 0.00 0.00 31.70 3.84
2724 3910 3.686016 TCTTTTCTTTAGCCAAGCCGAT 58.314 40.909 0.00 0.00 31.70 4.18
2725 3911 3.134574 TCTTTTCTTTAGCCAAGCCGA 57.865 42.857 0.00 0.00 31.70 5.54
2726 3912 3.915437 TTCTTTTCTTTAGCCAAGCCG 57.085 42.857 0.00 0.00 31.70 5.52
2727 3913 5.236478 GGTTTTTCTTTTCTTTAGCCAAGCC 59.764 40.000 0.00 0.00 31.70 4.35
2728 3914 5.236478 GGGTTTTTCTTTTCTTTAGCCAAGC 59.764 40.000 0.00 0.00 31.70 4.01
2729 3915 5.462068 CGGGTTTTTCTTTTCTTTAGCCAAG 59.538 40.000 0.00 0.00 0.00 3.61
2730 3916 5.353111 CGGGTTTTTCTTTTCTTTAGCCAA 58.647 37.500 0.00 0.00 0.00 4.52
2762 3948 0.537188 AATCGAACTGAGGATGCCGT 59.463 50.000 0.00 0.00 0.00 5.68
2788 3974 1.938657 ATGCTGACGTCCTGGACTCG 61.939 60.000 23.49 14.45 0.00 4.18
2876 6211 1.064166 AGAGGGTAGAACCGATCGGAA 60.064 52.381 39.55 18.68 39.83 4.30
2883 6218 3.564053 AGAGACTAGAGGGTAGAACCG 57.436 52.381 0.00 0.00 39.83 4.44
2931 6266 4.273480 CGGAATGAATTATCACCTGGACAC 59.727 45.833 0.00 0.00 38.69 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.