Multiple sequence alignment - TraesCS6D01G386200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G386200 chr6D 100.000 4483 0 0 1 4483 463757903 463753421 0.000000e+00 8279.0
1 TraesCS6D01G386200 chr6D 78.028 2180 403 53 1341 3497 463863324 463865450 0.000000e+00 1303.0
2 TraesCS6D01G386200 chr6D 85.570 1088 150 6 2401 3484 469604670 469605754 0.000000e+00 1133.0
3 TraesCS6D01G386200 chr6D 96.429 308 11 0 4174 4481 82649396 82649089 4.000000e-140 508.0
4 TraesCS6D01G386200 chr6D 95.584 317 13 1 4167 4483 11561624 11561939 1.440000e-139 507.0
5 TraesCS6D01G386200 chr6B 85.500 3531 348 73 192 3672 707006787 707010203 0.000000e+00 3533.0
6 TraesCS6D01G386200 chr6B 82.810 2769 395 57 876 3624 706972535 706975242 0.000000e+00 2401.0
7 TraesCS6D01G386200 chr6B 85.613 1126 153 9 2377 3499 707224962 707223843 0.000000e+00 1173.0
8 TraesCS6D01G386200 chr6B 94.194 465 23 1 3674 4138 707010322 707010782 0.000000e+00 706.0
9 TraesCS6D01G386200 chr6B 95.779 308 11 2 4177 4483 51218969 51219275 3.110000e-136 496.0
10 TraesCS6D01G386200 chr6B 90.256 195 14 3 1 194 707006436 707006626 2.680000e-62 250.0
11 TraesCS6D01G386200 chr6B 96.721 61 2 0 364 424 687051728 687051788 7.930000e-18 102.0
12 TraesCS6D01G386200 chr6B 92.000 50 3 1 609 658 707007134 707007182 8.050000e-08 69.4
13 TraesCS6D01G386200 chr6A 83.805 2933 379 65 783 3672 610267976 610270855 0.000000e+00 2697.0
14 TraesCS6D01G386200 chr6A 77.428 2193 395 56 1333 3496 610403007 610405128 0.000000e+00 1216.0
15 TraesCS6D01G386200 chr6A 84.725 1126 164 8 2377 3499 610275305 610276425 0.000000e+00 1120.0
16 TraesCS6D01G386200 chr6A 75.570 921 190 23 1336 2246 610274294 610275189 5.360000e-114 422.0
17 TraesCS6D01G386200 chrUn 82.149 2336 327 54 1336 3622 253311433 253313727 0.000000e+00 1921.0
18 TraesCS6D01G386200 chrUn 88.406 69 6 2 357 424 297344833 297344900 1.030000e-11 82.4
19 TraesCS6D01G386200 chr2B 77.978 2216 412 53 1337 3491 402558016 402555816 0.000000e+00 1319.0
20 TraesCS6D01G386200 chr2B 95.000 320 14 2 4165 4483 13032506 13032824 6.690000e-138 501.0
21 TraesCS6D01G386200 chr2A 75.424 1355 279 38 1337 2653 445034503 445033165 3.830000e-170 608.0
22 TraesCS6D01G386200 chr7D 96.486 313 11 0 4171 4483 561095335 561095023 6.650000e-143 518.0
23 TraesCS6D01G386200 chr7D 91.549 71 4 2 356 426 383070187 383070255 3.690000e-16 97.1
24 TraesCS6D01G386200 chr7B 95.738 305 13 0 4179 4483 32910835 32911139 4.030000e-135 492.0
25 TraesCS6D01G386200 chr7B 94.855 311 16 0 4173 4483 587635338 587635028 1.870000e-133 486.0
26 TraesCS6D01G386200 chr3A 94.654 318 14 3 4167 4483 679934972 679935287 1.450000e-134 490.0
27 TraesCS6D01G386200 chr3A 93.548 62 4 0 363 424 745931241 745931180 4.770000e-15 93.5
28 TraesCS6D01G386200 chr5D 95.146 309 15 0 4175 4483 443711315 443711623 5.210000e-134 488.0
29 TraesCS6D01G386200 chr5D 89.394 66 7 0 359 424 297312289 297312354 2.870000e-12 84.2
30 TraesCS6D01G386200 chr1A 72.601 938 196 39 1337 2238 9149515 9148603 7.440000e-63 252.0
31 TraesCS6D01G386200 chr1D 76.458 463 98 10 1337 1795 7049746 7050201 1.610000e-59 241.0
32 TraesCS6D01G386200 chr1B 91.549 71 3 3 356 426 256934638 256934571 1.330000e-15 95.3
33 TraesCS6D01G386200 chr4D 88.406 69 6 2 357 424 26919583 26919650 1.030000e-11 82.4
34 TraesCS6D01G386200 chr4D 88.406 69 6 2 357 424 26923638 26923705 1.030000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G386200 chr6D 463753421 463757903 4482 True 8279.0 8279 100.000000 1 4483 1 chr6D.!!$R2 4482
1 TraesCS6D01G386200 chr6D 463863324 463865450 2126 False 1303.0 1303 78.028000 1341 3497 1 chr6D.!!$F2 2156
2 TraesCS6D01G386200 chr6D 469604670 469605754 1084 False 1133.0 1133 85.570000 2401 3484 1 chr6D.!!$F3 1083
3 TraesCS6D01G386200 chr6B 706972535 706975242 2707 False 2401.0 2401 82.810000 876 3624 1 chr6B.!!$F3 2748
4 TraesCS6D01G386200 chr6B 707223843 707224962 1119 True 1173.0 1173 85.613000 2377 3499 1 chr6B.!!$R1 1122
5 TraesCS6D01G386200 chr6B 707006436 707010782 4346 False 1139.6 3533 90.487500 1 4138 4 chr6B.!!$F4 4137
6 TraesCS6D01G386200 chr6A 610267976 610276425 8449 False 1413.0 2697 81.366667 783 3672 3 chr6A.!!$F2 2889
7 TraesCS6D01G386200 chr6A 610403007 610405128 2121 False 1216.0 1216 77.428000 1333 3496 1 chr6A.!!$F1 2163
8 TraesCS6D01G386200 chrUn 253311433 253313727 2294 False 1921.0 1921 82.149000 1336 3622 1 chrUn.!!$F1 2286
9 TraesCS6D01G386200 chr2B 402555816 402558016 2200 True 1319.0 1319 77.978000 1337 3491 1 chr2B.!!$R1 2154
10 TraesCS6D01G386200 chr2A 445033165 445034503 1338 True 608.0 608 75.424000 1337 2653 1 chr2A.!!$R1 1316
11 TraesCS6D01G386200 chr1A 9148603 9149515 912 True 252.0 252 72.601000 1337 2238 1 chr1A.!!$R1 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 669 0.178961 GGGGGCTTTCTTGGTCTTGT 60.179 55.0 0.00 0.0 0.00 3.16 F
1132 1327 0.094730 CGACATTTTTCTCCGCGACC 59.905 55.0 8.23 0.0 0.00 4.79 F
1591 1786 0.397941 CCTTGGGCAGTCACTTCTGA 59.602 55.0 0.00 0.0 37.61 3.27 F
1967 2204 0.109735 GCTTACCCAAAAGTCTGCGC 60.110 55.0 0.00 0.0 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1323 1518 0.108186 CCACCTGCGCATCTTGTCTA 60.108 55.0 12.24 0.0 0.00 2.59 R
1947 2184 0.165944 CGCAGACTTTTGGGTAAGCG 59.834 55.0 0.00 0.0 36.69 4.68 R
3332 3617 0.400213 TTGACATTGAAGGCCTCCGT 59.600 50.0 5.23 0.0 0.00 4.69 R
3729 4169 1.668419 GTTAATGCTGGACGGATGCT 58.332 50.0 0.00 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.950395 CTGGAGAATTTGAATCCTGGGTC 59.050 47.826 0.00 0.00 34.04 4.46
87 88 3.624777 CAGGGATTCCTTTGCACTACAT 58.375 45.455 2.01 0.00 42.67 2.29
94 95 7.029563 GGATTCCTTTGCACTACATTACAAAG 58.970 38.462 7.23 7.23 45.40 2.77
130 131 5.300792 TCCGCTCAAACCTTTTGAAAGTAAT 59.699 36.000 3.13 0.00 34.20 1.89
173 174 6.040209 TGCAAGCATTGGAAATTTCATAGT 57.960 33.333 19.49 2.61 45.87 2.12
174 175 7.167924 TGCAAGCATTGGAAATTTCATAGTA 57.832 32.000 19.49 0.69 45.87 1.82
219 383 1.550976 CGACCAGACTAGGCCTTCTTT 59.449 52.381 12.58 0.00 0.00 2.52
227 391 5.024118 AGACTAGGCCTTCTTTTAGTAGCA 58.976 41.667 12.58 0.00 0.00 3.49
228 392 5.484290 AGACTAGGCCTTCTTTTAGTAGCAA 59.516 40.000 12.58 0.00 0.00 3.91
242 406 6.510879 TTAGTAGCAAGAGATCACGAAGAA 57.489 37.500 0.00 0.00 0.00 2.52
248 412 4.153117 GCAAGAGATCACGAAGAACACATT 59.847 41.667 0.00 0.00 0.00 2.71
249 413 5.334414 GCAAGAGATCACGAAGAACACATTT 60.334 40.000 0.00 0.00 0.00 2.32
250 414 6.128553 GCAAGAGATCACGAAGAACACATTTA 60.129 38.462 0.00 0.00 0.00 1.40
311 475 9.431690 AAGAATGCAGATATATGCCTCTAGATA 57.568 33.333 19.14 0.00 45.91 1.98
314 478 7.961326 TGCAGATATATGCCTCTAGATACAA 57.039 36.000 19.14 0.00 45.91 2.41
317 481 9.658799 GCAGATATATGCCTCTAGATACAAAAA 57.341 33.333 11.34 0.00 40.43 1.94
372 536 8.773404 AACACAAGTACATACATACTTCCTTC 57.227 34.615 0.00 0.00 42.30 3.46
384 548 3.242549 ACTTCCTTCGTCCGGAATTAC 57.757 47.619 5.23 0.00 39.64 1.89
387 551 3.241067 TCCTTCGTCCGGAATTACTTG 57.759 47.619 5.23 0.00 33.26 3.16
391 555 1.541147 TCGTCCGGAATTACTTGTCGT 59.459 47.619 5.23 0.00 0.00 4.34
393 557 1.997606 GTCCGGAATTACTTGTCGTGG 59.002 52.381 5.23 0.00 0.00 4.94
394 558 1.894466 TCCGGAATTACTTGTCGTGGA 59.106 47.619 0.00 0.00 0.00 4.02
395 559 2.299582 TCCGGAATTACTTGTCGTGGAA 59.700 45.455 0.00 0.00 0.00 3.53
396 560 3.068560 CCGGAATTACTTGTCGTGGAAA 58.931 45.455 0.00 0.00 0.00 3.13
397 561 3.687698 CCGGAATTACTTGTCGTGGAAAT 59.312 43.478 0.00 0.00 0.00 2.17
398 562 4.436852 CCGGAATTACTTGTCGTGGAAATG 60.437 45.833 0.00 0.00 0.00 2.32
399 563 4.436852 CGGAATTACTTGTCGTGGAAATGG 60.437 45.833 0.00 0.00 0.00 3.16
400 564 4.698304 GGAATTACTTGTCGTGGAAATGGA 59.302 41.667 0.00 0.00 0.00 3.41
401 565 5.357032 GGAATTACTTGTCGTGGAAATGGAT 59.643 40.000 0.00 0.00 0.00 3.41
402 566 6.540914 GGAATTACTTGTCGTGGAAATGGATA 59.459 38.462 0.00 0.00 0.00 2.59
451 618 6.555463 AATTTCGGATGGAAGGAGTAGTTA 57.445 37.500 0.00 0.00 35.70 2.24
453 620 4.996788 TCGGATGGAAGGAGTAGTTAAC 57.003 45.455 0.00 0.00 0.00 2.01
467 634 1.080435 GTTAACTCTACGTGGGCGCC 61.080 60.000 21.18 21.18 42.83 6.53
474 641 3.599285 TACGTGGGCGCCCTTGAAG 62.599 63.158 43.34 28.41 42.83 3.02
495 666 0.560688 TTTGGGGGCTTTCTTGGTCT 59.439 50.000 0.00 0.00 0.00 3.85
496 667 0.560688 TTGGGGGCTTTCTTGGTCTT 59.439 50.000 0.00 0.00 0.00 3.01
497 668 0.178964 TGGGGGCTTTCTTGGTCTTG 60.179 55.000 0.00 0.00 0.00 3.02
498 669 0.178961 GGGGGCTTTCTTGGTCTTGT 60.179 55.000 0.00 0.00 0.00 3.16
499 670 0.961753 GGGGCTTTCTTGGTCTTGTG 59.038 55.000 0.00 0.00 0.00 3.33
500 671 0.961753 GGGCTTTCTTGGTCTTGTGG 59.038 55.000 0.00 0.00 0.00 4.17
501 672 1.478654 GGGCTTTCTTGGTCTTGTGGA 60.479 52.381 0.00 0.00 0.00 4.02
502 673 2.519013 GGCTTTCTTGGTCTTGTGGAT 58.481 47.619 0.00 0.00 0.00 3.41
503 674 2.229784 GGCTTTCTTGGTCTTGTGGATG 59.770 50.000 0.00 0.00 0.00 3.51
504 675 3.149196 GCTTTCTTGGTCTTGTGGATGA 58.851 45.455 0.00 0.00 0.00 2.92
505 676 3.569701 GCTTTCTTGGTCTTGTGGATGAA 59.430 43.478 0.00 0.00 0.00 2.57
506 677 4.219288 GCTTTCTTGGTCTTGTGGATGAAT 59.781 41.667 0.00 0.00 0.00 2.57
507 678 5.415701 GCTTTCTTGGTCTTGTGGATGAATA 59.584 40.000 0.00 0.00 0.00 1.75
508 679 6.071952 GCTTTCTTGGTCTTGTGGATGAATAA 60.072 38.462 0.00 0.00 0.00 1.40
509 680 6.817765 TTCTTGGTCTTGTGGATGAATAAC 57.182 37.500 0.00 0.00 0.00 1.89
510 681 6.126863 TCTTGGTCTTGTGGATGAATAACT 57.873 37.500 0.00 0.00 0.00 2.24
511 682 6.542821 TCTTGGTCTTGTGGATGAATAACTT 58.457 36.000 0.00 0.00 0.00 2.66
512 683 7.685481 TCTTGGTCTTGTGGATGAATAACTTA 58.315 34.615 0.00 0.00 0.00 2.24
513 684 7.824289 TCTTGGTCTTGTGGATGAATAACTTAG 59.176 37.037 0.00 0.00 0.00 2.18
514 685 7.016153 TGGTCTTGTGGATGAATAACTTAGT 57.984 36.000 0.00 0.00 0.00 2.24
515 686 7.103641 TGGTCTTGTGGATGAATAACTTAGTC 58.896 38.462 0.00 0.00 0.00 2.59
533 704 2.104111 AGTCACGTTCAACAGGGATGAA 59.896 45.455 0.00 0.00 34.56 2.57
556 738 1.069765 AGCTGACACTTGTCCCACG 59.930 57.895 6.91 0.00 44.15 4.94
566 748 3.050275 GTCCCACGGTTCAGCAGC 61.050 66.667 0.00 0.00 0.00 5.25
587 769 6.183360 GCAGCTAGCATGTAAACAAATGAAAC 60.183 38.462 18.83 0.00 44.79 2.78
652 841 1.752694 GAAATAGCTTGGGCCGGCA 60.753 57.895 30.85 5.28 39.73 5.69
668 857 4.347453 CAACAAGGCCGGCACAGC 62.347 66.667 30.85 11.04 0.00 4.40
688 877 1.795286 CGACAGTGAAGCTTCTGAACC 59.205 52.381 26.09 12.09 35.84 3.62
703 892 1.202687 TGAACCAGTCAGGCAGTCAAG 60.203 52.381 0.00 0.00 43.14 3.02
710 899 1.678101 GTCAGGCAGTCAAGCTTTTGT 59.322 47.619 0.00 0.00 34.17 2.83
719 908 6.080406 GCAGTCAAGCTTTTGTACTAATCAC 58.920 40.000 0.00 0.00 0.00 3.06
720 909 6.603095 CAGTCAAGCTTTTGTACTAATCACC 58.397 40.000 0.00 0.00 0.00 4.02
723 912 6.017440 GTCAAGCTTTTGTACTAATCACCACA 60.017 38.462 0.00 0.00 0.00 4.17
724 913 6.544197 TCAAGCTTTTGTACTAATCACCACAA 59.456 34.615 0.00 0.00 0.00 3.33
725 914 6.313744 AGCTTTTGTACTAATCACCACAAC 57.686 37.500 0.00 0.00 31.00 3.32
726 915 5.825679 AGCTTTTGTACTAATCACCACAACA 59.174 36.000 0.00 0.00 31.00 3.33
727 916 6.320164 AGCTTTTGTACTAATCACCACAACAA 59.680 34.615 0.00 0.00 31.00 2.83
728 917 7.014230 AGCTTTTGTACTAATCACCACAACAAT 59.986 33.333 0.00 0.00 31.00 2.71
729 918 7.326063 GCTTTTGTACTAATCACCACAACAATC 59.674 37.037 0.00 0.00 31.00 2.67
730 919 6.811253 TTGTACTAATCACCACAACAATCC 57.189 37.500 0.00 0.00 0.00 3.01
731 920 5.870706 TGTACTAATCACCACAACAATCCA 58.129 37.500 0.00 0.00 0.00 3.41
732 921 6.480763 TGTACTAATCACCACAACAATCCAT 58.519 36.000 0.00 0.00 0.00 3.41
733 922 6.597672 TGTACTAATCACCACAACAATCCATC 59.402 38.462 0.00 0.00 0.00 3.51
734 923 4.949856 ACTAATCACCACAACAATCCATCC 59.050 41.667 0.00 0.00 0.00 3.51
735 924 2.967745 TCACCACAACAATCCATCCA 57.032 45.000 0.00 0.00 0.00 3.41
736 925 3.454719 TCACCACAACAATCCATCCAT 57.545 42.857 0.00 0.00 0.00 3.41
737 926 3.777087 TCACCACAACAATCCATCCATT 58.223 40.909 0.00 0.00 0.00 3.16
738 927 3.763360 TCACCACAACAATCCATCCATTC 59.237 43.478 0.00 0.00 0.00 2.67
739 928 3.765511 CACCACAACAATCCATCCATTCT 59.234 43.478 0.00 0.00 0.00 2.40
740 929 4.019174 ACCACAACAATCCATCCATTCTC 58.981 43.478 0.00 0.00 0.00 2.87
741 930 4.018490 CCACAACAATCCATCCATTCTCA 58.982 43.478 0.00 0.00 0.00 3.27
742 931 4.463539 CCACAACAATCCATCCATTCTCAA 59.536 41.667 0.00 0.00 0.00 3.02
743 932 5.047164 CCACAACAATCCATCCATTCTCAAA 60.047 40.000 0.00 0.00 0.00 2.69
744 933 6.457355 CACAACAATCCATCCATTCTCAAAA 58.543 36.000 0.00 0.00 0.00 2.44
745 934 6.930164 CACAACAATCCATCCATTCTCAAAAA 59.070 34.615 0.00 0.00 0.00 1.94
746 935 7.117236 CACAACAATCCATCCATTCTCAAAAAG 59.883 37.037 0.00 0.00 0.00 2.27
747 936 6.290294 ACAATCCATCCATTCTCAAAAAGG 57.710 37.500 0.00 0.00 0.00 3.11
748 937 6.018469 ACAATCCATCCATTCTCAAAAAGGA 58.982 36.000 0.00 0.00 0.00 3.36
749 938 6.497954 ACAATCCATCCATTCTCAAAAAGGAA 59.502 34.615 0.00 0.00 31.17 3.36
750 939 7.016465 ACAATCCATCCATTCTCAAAAAGGAAA 59.984 33.333 0.00 0.00 31.17 3.13
776 965 6.423776 AAAAAGAGCAATCCATCTTTCCAA 57.576 33.333 1.05 0.00 43.25 3.53
792 981 3.208747 TCCAACTCCAAAGAACTGGAC 57.791 47.619 0.00 0.00 40.71 4.02
825 1014 2.881352 CGGAAGGAGAGTTCGCGC 60.881 66.667 0.00 0.00 0.00 6.86
826 1015 2.509561 GGAAGGAGAGTTCGCGCC 60.510 66.667 0.00 0.00 0.00 6.53
863 1052 2.287069 CGGCTAGACCATCTTCTACACG 60.287 54.545 0.00 0.00 39.03 4.49
923 1118 1.550524 ACTACTCCGCAAAGCTCATCA 59.449 47.619 0.00 0.00 0.00 3.07
945 1140 2.872408 GCTTGCTTACCATGCTCCA 58.128 52.632 0.00 0.00 40.42 3.86
946 1141 1.396653 GCTTGCTTACCATGCTCCAT 58.603 50.000 0.00 0.00 40.42 3.41
947 1142 1.066605 GCTTGCTTACCATGCTCCATG 59.933 52.381 0.00 0.00 40.42 3.66
948 1143 1.066605 CTTGCTTACCATGCTCCATGC 59.933 52.381 0.00 0.00 40.20 4.06
949 1144 1.096967 TGCTTACCATGCTCCATGCG 61.097 55.000 0.00 0.00 46.63 4.73
1019 1214 0.325296 ATGGGTCCTGCCGTTCTCTA 60.325 55.000 0.00 0.00 38.44 2.43
1026 1221 1.550976 CCTGCCGTTCTCTACTTCCTT 59.449 52.381 0.00 0.00 0.00 3.36
1117 1312 1.600013 CGGTTTGGATCAACAACGACA 59.400 47.619 0.00 0.00 0.00 4.35
1132 1327 0.094730 CGACATTTTTCTCCGCGACC 59.905 55.000 8.23 0.00 0.00 4.79
1139 1334 2.773397 TTTCTCCGCGACCGCATCAA 62.773 55.000 8.23 0.00 42.06 2.57
1165 1360 2.173669 CGCACCATCATCACCCGTC 61.174 63.158 0.00 0.00 0.00 4.79
1193 1388 0.603707 CCAGAAACTCAAGCTCGCCA 60.604 55.000 0.00 0.00 0.00 5.69
1203 1398 2.564553 AAGCTCGCCATGACTCCGAC 62.565 60.000 0.00 0.00 0.00 4.79
1238 1433 2.505407 CAGGGTTCATATGTGTCTCCCA 59.495 50.000 17.90 0.00 35.10 4.37
1282 1477 4.879545 TCCTCTTTGCGGTATTCATTTACC 59.120 41.667 0.00 0.00 38.63 2.85
1288 1483 4.328536 TGCGGTATTCATTTACCACAACT 58.671 39.130 1.94 0.00 41.53 3.16
1293 1488 7.440255 GCGGTATTCATTTACCACAACTATAGT 59.560 37.037 0.00 0.00 41.53 2.12
1294 1489 8.761497 CGGTATTCATTTACCACAACTATAGTG 58.239 37.037 6.06 3.62 41.53 2.74
1298 1493 8.771920 TTCATTTACCACAACTATAGTGTGAG 57.228 34.615 24.80 19.33 35.75 3.51
1300 1495 5.731957 TTACCACAACTATAGTGTGAGCA 57.268 39.130 24.80 13.40 35.75 4.26
1321 1516 3.950087 TCAATCGAATCGATGCCAAAG 57.050 42.857 19.44 5.67 46.30 2.77
1323 1518 4.129380 TCAATCGAATCGATGCCAAAGAT 58.871 39.130 19.44 0.00 46.30 2.40
1324 1519 5.296748 TCAATCGAATCGATGCCAAAGATA 58.703 37.500 19.44 0.00 46.30 1.98
1325 1520 5.406477 TCAATCGAATCGATGCCAAAGATAG 59.594 40.000 19.44 0.40 46.30 2.08
1326 1521 4.584327 TCGAATCGATGCCAAAGATAGA 57.416 40.909 0.00 0.00 0.00 1.98
1327 1522 4.299155 TCGAATCGATGCCAAAGATAGAC 58.701 43.478 0.00 0.00 0.00 2.59
1328 1523 4.051237 CGAATCGATGCCAAAGATAGACA 58.949 43.478 0.00 0.00 0.00 3.41
1329 1524 4.507756 CGAATCGATGCCAAAGATAGACAA 59.492 41.667 0.00 0.00 0.00 3.18
1330 1525 5.332883 CGAATCGATGCCAAAGATAGACAAG 60.333 44.000 0.00 0.00 0.00 3.16
1331 1526 4.736126 TCGATGCCAAAGATAGACAAGA 57.264 40.909 0.00 0.00 0.00 3.02
1423 1618 3.319198 GGAACCTGGTCCTCCGCA 61.319 66.667 0.00 0.00 34.56 5.69
1428 1623 1.450312 CCTGGTCCTCCGCAATGAC 60.450 63.158 0.00 0.00 36.30 3.06
1439 1634 1.498865 CGCAATGACGATGGTAGCCC 61.499 60.000 0.00 0.00 34.06 5.19
1472 1667 2.262915 CACCTCAGGACGGTCTGC 59.737 66.667 8.23 0.00 34.91 4.26
1477 1672 4.007644 CAGGACGGTCTGCAGCCA 62.008 66.667 21.86 0.00 0.00 4.75
1532 1727 3.877559 TGTTCGATCAGAGGAATGCAAT 58.122 40.909 0.00 0.00 0.00 3.56
1570 1765 2.309528 TCATCCTACCGACACATTGC 57.690 50.000 0.00 0.00 0.00 3.56
1591 1786 0.397941 CCTTGGGCAGTCACTTCTGA 59.602 55.000 0.00 0.00 37.61 3.27
1605 1800 5.121454 GTCACTTCTGAAAGGTATGAAGCTG 59.879 44.000 0.00 0.00 39.39 4.24
1632 1827 4.215399 GCAAGTACCTCTGCAACAAATACA 59.785 41.667 7.19 0.00 0.00 2.29
1663 1861 8.993121 AGAATCAATTGTATATCACTTTAGCCG 58.007 33.333 5.13 0.00 0.00 5.52
1665 1863 5.176774 TCAATTGTATATCACTTTAGCCGCG 59.823 40.000 5.13 0.00 0.00 6.46
1666 1864 3.720949 TGTATATCACTTTAGCCGCGT 57.279 42.857 4.92 0.00 0.00 6.01
1668 1866 4.539870 TGTATATCACTTTAGCCGCGTAC 58.460 43.478 4.92 0.00 0.00 3.67
1698 1896 2.746904 TGCTTATGTTGAATCCACACCG 59.253 45.455 0.00 0.00 0.00 4.94
1723 1927 4.929808 CACAACCCTACTACTGTTCATCAC 59.070 45.833 0.00 0.00 0.00 3.06
1724 1928 4.838986 ACAACCCTACTACTGTTCATCACT 59.161 41.667 0.00 0.00 0.00 3.41
1774 1978 7.321908 TGATCCAACAAATGTTACATTCATGG 58.678 34.615 20.85 20.85 36.32 3.66
1818 2037 6.350906 TGTGCAGTCAGATTATCATGATCAA 58.649 36.000 12.53 5.83 0.00 2.57
1833 2052 3.091545 TGATCAAATCTTCTGGCCAACC 58.908 45.455 7.01 0.00 0.00 3.77
1838 2057 2.789409 ATCTTCTGGCCAACCACTAC 57.211 50.000 7.01 0.00 42.67 2.73
1846 2065 0.679960 GCCAACCACTACATCCACCC 60.680 60.000 0.00 0.00 0.00 4.61
1847 2066 0.695924 CCAACCACTACATCCACCCA 59.304 55.000 0.00 0.00 0.00 4.51
1848 2067 1.340017 CCAACCACTACATCCACCCAG 60.340 57.143 0.00 0.00 0.00 4.45
1859 2078 0.613260 TCCACCCAGCAGTACATGAC 59.387 55.000 0.00 0.00 0.00 3.06
1878 2097 7.515586 ACATGACATTAGATTCAGATGGACAT 58.484 34.615 0.00 0.00 0.00 3.06
1904 2135 7.282332 TGAGAGTGTATGAATGGTCTGATAG 57.718 40.000 0.00 0.00 0.00 2.08
1913 2144 8.997323 GTATGAATGGTCTGATAGAAAATGGAG 58.003 37.037 0.00 0.00 0.00 3.86
1918 2149 5.721480 TGGTCTGATAGAAAATGGAGAGTGA 59.279 40.000 0.00 0.00 0.00 3.41
1920 2151 7.092712 TGGTCTGATAGAAAATGGAGAGTGAAT 60.093 37.037 0.00 0.00 0.00 2.57
1958 2195 2.722094 AGATGATTGCGCTTACCCAAA 58.278 42.857 9.73 0.00 0.00 3.28
1967 2204 0.109735 GCTTACCCAAAAGTCTGCGC 60.110 55.000 0.00 0.00 0.00 6.09
1971 2208 2.556287 CCAAAAGTCTGCGCGGAC 59.444 61.111 36.63 36.63 36.56 4.79
1985 2228 1.284982 GCGGACTACGGCATATGCAG 61.285 60.000 28.07 25.92 44.51 4.41
2013 2256 3.568007 GGCAATGTACTTGTCCACTTCAA 59.432 43.478 0.00 0.00 37.18 2.69
2024 2267 8.379457 ACTTGTCCACTTCAAAACTATTCTAC 57.621 34.615 0.00 0.00 0.00 2.59
2027 2270 8.974060 TGTCCACTTCAAAACTATTCTACTTT 57.026 30.769 0.00 0.00 0.00 2.66
2059 2302 2.202932 CGGTGGATGAGCGGAAGG 60.203 66.667 0.00 0.00 42.02 3.46
2087 2330 3.911137 TTGCACGCCAACAACTCA 58.089 50.000 0.00 0.00 0.00 3.41
2091 2334 1.950216 TGCACGCCAACAACTCAAATA 59.050 42.857 0.00 0.00 0.00 1.40
2167 2410 5.815581 ACTTTGATAACAGCCATGAGGTTA 58.184 37.500 0.00 0.19 37.19 2.85
2176 2422 6.949352 ACAGCCATGAGGTTATGAATTTAG 57.051 37.500 0.00 0.00 37.19 1.85
2220 2466 2.812591 CTGCTTGAAGAACTGCTCATGT 59.187 45.455 0.00 0.00 0.00 3.21
2242 2488 4.682778 AAGGCCGTTATGTTCAGCTATA 57.317 40.909 0.00 0.00 0.00 1.31
2249 2495 4.443394 CGTTATGTTCAGCTATAACCGGTC 59.557 45.833 8.04 0.00 36.76 4.79
2421 2697 2.951642 TGCTACATTTGGAGCTATTGCC 59.048 45.455 15.49 0.00 39.54 4.52
2505 2787 7.979444 AGACAAAGACGAGGAATTTGATTTA 57.021 32.000 4.08 0.00 37.37 1.40
2551 2833 5.734503 GCAAGGTTTTCTCTTGAGAAGTTGG 60.735 44.000 12.11 4.59 42.94 3.77
2640 2922 7.503902 GGGAAATTAGGTGAAGATAGAATTGCT 59.496 37.037 0.00 0.00 0.00 3.91
2742 3024 6.491062 ACATCAATCTTGTCAAACTGATTGGA 59.509 34.615 18.65 10.64 43.27 3.53
2836 3119 6.874297 TCTATTACCGTCATAACAACAACG 57.126 37.500 0.00 0.00 35.01 4.10
2848 3131 1.001378 ACAACAACGCTCTTGATTGGC 60.001 47.619 0.00 0.00 0.00 4.52
2858 3141 0.238289 CTTGATTGGCGCACTCGTTT 59.762 50.000 10.83 0.00 38.14 3.60
2985 3269 6.777398 TGAGAACTTCAATGCCAAAGTAGGC 61.777 44.000 0.00 0.00 43.39 3.93
3147 3431 8.303876 GTTGTTGTGATGGAAATATTAAGTGGT 58.696 33.333 0.00 0.00 0.00 4.16
3335 3620 0.592637 TGCAAAATGACAGCAGACGG 59.407 50.000 0.00 0.00 33.75 4.79
3371 3656 5.882557 GTCAACAGTGATCAAGGTATTGGAT 59.117 40.000 0.00 0.00 35.80 3.41
3382 3667 2.017049 GGTATTGGATGGTGCAGTGAC 58.983 52.381 0.00 0.00 0.00 3.67
3675 3994 2.851263 AAACGGTAGTGCCATGAGAA 57.149 45.000 0.00 0.00 36.97 2.87
3697 4137 9.651718 GAGAAAAACTACATTTGTTAGTGACTG 57.348 33.333 0.00 0.00 0.00 3.51
3729 4169 1.271934 CCATCCGCAAATTCAACACCA 59.728 47.619 0.00 0.00 0.00 4.17
3878 4318 1.094785 CGCATTTCTACACTTGGGGG 58.905 55.000 0.00 0.00 0.00 5.40
3893 4333 8.057246 ACACTTGGGGGTATATCTGAAATATT 57.943 34.615 0.00 0.00 0.00 1.28
3941 4381 0.397941 ACACCACACTCCACATCTGG 59.602 55.000 0.00 0.00 39.23 3.86
3958 4398 1.697432 CTGGAGGTGGAAAGTGGTACA 59.303 52.381 0.00 0.00 0.00 2.90
3959 4399 2.305927 CTGGAGGTGGAAAGTGGTACAT 59.694 50.000 0.00 0.00 44.52 2.29
3960 4400 3.517901 CTGGAGGTGGAAAGTGGTACATA 59.482 47.826 0.00 0.00 44.52 2.29
3961 4401 3.262405 TGGAGGTGGAAAGTGGTACATAC 59.738 47.826 0.00 0.00 44.52 2.39
4016 4456 3.976793 TGAAGTGAAAGCAGCTGAAAG 57.023 42.857 20.43 0.00 0.00 2.62
4025 4507 5.068198 TGAAAGCAGCTGAAAGTCTGAAAAT 59.932 36.000 20.43 0.00 39.43 1.82
4138 8128 6.434028 TCCAATCCTTCCAACTAGTGAAAATG 59.566 38.462 0.00 0.00 0.00 2.32
4139 8129 6.434028 CCAATCCTTCCAACTAGTGAAAATGA 59.566 38.462 0.00 0.00 0.00 2.57
4143 8133 5.120830 CCTTCCAACTAGTGAAAATGAGACG 59.879 44.000 0.00 0.00 0.00 4.18
4144 8134 5.462530 TCCAACTAGTGAAAATGAGACGA 57.537 39.130 0.00 0.00 0.00 4.20
4145 8135 5.227908 TCCAACTAGTGAAAATGAGACGAC 58.772 41.667 0.00 0.00 0.00 4.34
4151 8141 2.413453 GTGAAAATGAGACGACTGAGGC 59.587 50.000 0.00 0.00 0.00 4.70
4152 8142 1.656095 GAAAATGAGACGACTGAGGCG 59.344 52.381 5.97 5.97 0.00 5.52
4153 8143 0.888619 AAATGAGACGACTGAGGCGA 59.111 50.000 17.64 0.00 0.00 5.54
4154 8144 0.888619 AATGAGACGACTGAGGCGAA 59.111 50.000 17.64 0.00 0.00 4.70
4156 8146 0.671796 TGAGACGACTGAGGCGAAAA 59.328 50.000 17.64 0.00 0.00 2.29
4157 8147 1.067974 TGAGACGACTGAGGCGAAAAA 59.932 47.619 17.64 0.00 0.00 1.94
4174 8164 1.501654 AAAAGGCTGGACTCCCTCCC 61.502 60.000 0.00 0.00 38.49 4.30
4175 8165 2.423479 AAAGGCTGGACTCCCTCCCT 62.423 60.000 0.00 0.00 38.49 4.20
4176 8166 2.766229 GGCTGGACTCCCTCCCTC 60.766 72.222 0.00 0.00 38.49 4.30
4178 8168 1.760480 GCTGGACTCCCTCCCTCTC 60.760 68.421 0.00 0.00 38.49 3.20
4179 8169 1.075600 CTGGACTCCCTCCCTCTCC 60.076 68.421 0.00 0.00 38.49 3.71
4180 8170 2.284151 GGACTCCCTCCCTCTCCC 59.716 72.222 0.00 0.00 31.83 4.30
4181 8171 2.123640 GACTCCCTCCCTCTCCCG 60.124 72.222 0.00 0.00 0.00 5.14
4183 8173 2.123640 CTCCCTCCCTCTCCCGAC 60.124 72.222 0.00 0.00 0.00 4.79
4184 8174 2.617538 TCCCTCCCTCTCCCGACT 60.618 66.667 0.00 0.00 0.00 4.18
4185 8175 2.123640 CCCTCCCTCTCCCGACTC 60.124 72.222 0.00 0.00 0.00 3.36
4186 8176 2.123640 CCTCCCTCTCCCGACTCC 60.124 72.222 0.00 0.00 0.00 3.85
4188 8178 4.816984 TCCCTCTCCCGACTCCGC 62.817 72.222 0.00 0.00 0.00 5.54
4190 8180 4.824515 CCTCTCCCGACTCCGCCT 62.825 72.222 0.00 0.00 0.00 5.52
4191 8181 3.213402 CTCTCCCGACTCCGCCTC 61.213 72.222 0.00 0.00 0.00 4.70
4238 8228 2.592308 GGCTCCTCCGCATCCTTT 59.408 61.111 0.00 0.00 0.00 3.11
4239 8229 1.524849 GGCTCCTCCGCATCCTTTC 60.525 63.158 0.00 0.00 0.00 2.62
4240 8230 1.524849 GCTCCTCCGCATCCTTTCC 60.525 63.158 0.00 0.00 0.00 3.13
4242 8232 0.105778 CTCCTCCGCATCCTTTCCTC 59.894 60.000 0.00 0.00 0.00 3.71
4243 8233 1.227380 CCTCCGCATCCTTTCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
4244 8234 1.884926 CTCCGCATCCTTTCCTCGC 60.885 63.158 0.00 0.00 0.00 5.03
4245 8235 2.897350 CCGCATCCTTTCCTCGCC 60.897 66.667 0.00 0.00 0.00 5.54
4247 8237 2.517166 GCATCCTTTCCTCGCCCC 60.517 66.667 0.00 0.00 0.00 5.80
4248 8238 2.193248 CATCCTTTCCTCGCCCCC 59.807 66.667 0.00 0.00 0.00 5.40
4249 8239 2.286121 ATCCTTTCCTCGCCCCCA 60.286 61.111 0.00 0.00 0.00 4.96
4250 8240 2.680370 ATCCTTTCCTCGCCCCCAC 61.680 63.158 0.00 0.00 0.00 4.61
4262 8252 3.400054 CCCCACCCCTCCGTTCTC 61.400 72.222 0.00 0.00 0.00 2.87
4263 8253 3.400054 CCCACCCCTCCGTTCTCC 61.400 72.222 0.00 0.00 0.00 3.71
4264 8254 3.400054 CCACCCCTCCGTTCTCCC 61.400 72.222 0.00 0.00 0.00 4.30
4265 8255 2.284699 CACCCCTCCGTTCTCCCT 60.285 66.667 0.00 0.00 0.00 4.20
4267 8257 2.764547 CCCCTCCGTTCTCCCTCC 60.765 72.222 0.00 0.00 0.00 4.30
4268 8258 2.764547 CCCTCCGTTCTCCCTCCC 60.765 72.222 0.00 0.00 0.00 4.30
4269 8259 2.764547 CCTCCGTTCTCCCTCCCC 60.765 72.222 0.00 0.00 0.00 4.81
4270 8260 2.764547 CTCCGTTCTCCCTCCCCC 60.765 72.222 0.00 0.00 0.00 5.40
4307 8297 4.181010 CCCGGATCTGGCCAGGTG 62.181 72.222 32.23 14.69 0.00 4.00
4308 8298 4.181010 CCGGATCTGGCCAGGTGG 62.181 72.222 32.23 20.08 38.53 4.61
4333 8323 4.116328 GCGGCGGGCCTTCTTTTC 62.116 66.667 9.78 0.00 34.80 2.29
4336 8326 3.068691 GCGGGCCTTCTTTTCCCC 61.069 66.667 0.84 0.00 36.69 4.81
4337 8327 2.362503 CGGGCCTTCTTTTCCCCC 60.363 66.667 0.84 0.00 36.69 5.40
4338 8328 2.362503 GGGCCTTCTTTTCCCCCG 60.363 66.667 0.84 0.00 33.91 5.73
4340 8330 3.440415 GCCTTCTTTTCCCCCGCG 61.440 66.667 0.00 0.00 0.00 6.46
4342 8332 3.799755 CTTCTTTTCCCCCGCGCG 61.800 66.667 25.67 25.67 0.00 6.86
4413 8403 4.736896 GTCCGGCGTCCTGGTGAC 62.737 72.222 6.01 0.00 40.81 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.433306 AATCAAACGACCCAGGATTCA 57.567 42.857 0.00 0.00 0.00 2.57
27 28 7.553881 AGGATTCCATACTACAAATCAAACG 57.446 36.000 5.29 0.00 31.25 3.60
66 67 3.071874 TGTAGTGCAAAGGAATCCCTG 57.928 47.619 0.00 0.00 43.48 4.45
68 69 4.947388 TGTAATGTAGTGCAAAGGAATCCC 59.053 41.667 0.00 0.00 0.00 3.85
87 88 8.788806 TGAGCGGATCTAAAATTTTCTTTGTAA 58.211 29.630 6.72 0.00 0.00 2.41
94 95 6.621613 AGGTTTGAGCGGATCTAAAATTTTC 58.378 36.000 6.72 0.00 28.23 2.29
98 99 6.208599 TCAAAAGGTTTGAGCGGATCTAAAAT 59.791 34.615 0.00 0.00 28.23 1.82
102 103 4.280436 TCAAAAGGTTTGAGCGGATCTA 57.720 40.909 0.00 0.00 0.00 1.98
103 104 3.140325 TCAAAAGGTTTGAGCGGATCT 57.860 42.857 0.00 0.00 0.00 2.75
105 106 3.636764 ACTTTCAAAAGGTTTGAGCGGAT 59.363 39.130 7.37 0.00 40.31 4.18
108 109 5.629435 GGATTACTTTCAAAAGGTTTGAGCG 59.371 40.000 7.37 2.77 40.31 5.03
130 131 4.105057 TGCACCCTAGGAAAAACTAAAGGA 59.895 41.667 11.48 0.00 0.00 3.36
140 141 2.170166 CAATGCTTGCACCCTAGGAAA 58.830 47.619 11.48 0.00 0.00 3.13
188 189 5.452077 GCCTAGTCTGGTCGAATTCTACATT 60.452 44.000 11.76 0.00 0.00 2.71
194 195 1.757699 AGGCCTAGTCTGGTCGAATTC 59.242 52.381 1.29 0.00 36.69 2.17
195 196 1.867363 AGGCCTAGTCTGGTCGAATT 58.133 50.000 1.29 0.00 36.69 2.17
196 197 1.757699 GAAGGCCTAGTCTGGTCGAAT 59.242 52.381 5.16 0.00 36.69 3.34
197 198 1.183549 GAAGGCCTAGTCTGGTCGAA 58.816 55.000 5.16 0.00 36.69 3.71
198 199 0.331954 AGAAGGCCTAGTCTGGTCGA 59.668 55.000 5.16 0.00 36.69 4.20
199 200 1.187087 AAGAAGGCCTAGTCTGGTCG 58.813 55.000 5.16 0.00 36.69 4.79
200 201 3.704800 AAAAGAAGGCCTAGTCTGGTC 57.295 47.619 5.16 0.00 0.00 4.02
201 202 4.168883 ACTAAAAGAAGGCCTAGTCTGGT 58.831 43.478 5.16 0.29 0.00 4.00
206 370 5.484290 TCTTGCTACTAAAAGAAGGCCTAGT 59.516 40.000 5.16 7.36 29.59 2.57
219 383 6.072119 TGTTCTTCGTGATCTCTTGCTACTAA 60.072 38.462 0.00 0.00 0.00 2.24
227 391 9.823647 ATATAAATGTGTTCTTCGTGATCTCTT 57.176 29.630 0.00 0.00 0.00 2.85
228 392 9.469807 GATATAAATGTGTTCTTCGTGATCTCT 57.530 33.333 0.00 0.00 0.00 3.10
260 424 8.743085 TTCGCCGGAGTATAAGATAATATACT 57.257 34.615 5.05 6.68 46.65 2.12
268 432 4.931661 TTCTTTCGCCGGAGTATAAGAT 57.068 40.909 5.05 0.00 0.00 2.40
269 433 4.617959 CATTCTTTCGCCGGAGTATAAGA 58.382 43.478 5.05 10.64 0.00 2.10
270 434 3.184581 GCATTCTTTCGCCGGAGTATAAG 59.815 47.826 5.05 8.33 0.00 1.73
345 509 7.903145 AGGAAGTATGTATGTACTTGTGTTCA 58.097 34.615 4.22 0.00 43.13 3.18
346 510 8.773404 AAGGAAGTATGTATGTACTTGTGTTC 57.227 34.615 4.22 0.00 43.13 3.18
354 518 5.210715 CGGACGAAGGAAGTATGTATGTAC 58.789 45.833 0.00 0.00 0.00 2.90
357 521 3.317149 TCCGGACGAAGGAAGTATGTATG 59.683 47.826 0.00 0.00 34.33 2.39
372 536 1.652124 CACGACAAGTAATTCCGGACG 59.348 52.381 1.83 3.25 0.00 4.79
384 548 6.531240 CCATTTTTATCCATTTCCACGACAAG 59.469 38.462 0.00 0.00 0.00 3.16
387 551 6.202516 TCCATTTTTATCCATTTCCACGAC 57.797 37.500 0.00 0.00 0.00 4.34
416 580 7.177832 TCCATCCGAAATTACTCAGTTCTAA 57.822 36.000 0.00 0.00 0.00 2.10
426 590 5.915175 ACTACTCCTTCCATCCGAAATTAC 58.085 41.667 0.00 0.00 0.00 1.89
427 591 6.555463 AACTACTCCTTCCATCCGAAATTA 57.445 37.500 0.00 0.00 0.00 1.40
429 593 6.156429 AGTTAACTACTCCTTCCATCCGAAAT 59.844 38.462 6.26 0.00 28.23 2.17
431 595 5.021458 AGTTAACTACTCCTTCCATCCGAA 58.979 41.667 6.26 0.00 28.23 4.30
432 596 4.607239 AGTTAACTACTCCTTCCATCCGA 58.393 43.478 6.26 0.00 28.23 4.55
433 597 4.934515 GAGTTAACTACTCCTTCCATCCG 58.065 47.826 8.42 0.00 46.30 4.18
451 618 4.078516 GGGCGCCCACGTAGAGTT 62.079 66.667 40.73 0.00 42.83 3.01
453 620 3.771160 AAGGGCGCCCACGTAGAG 61.771 66.667 45.13 0.00 42.83 2.43
464 631 1.665442 CCCCAAAACTTCAAGGGCG 59.335 57.895 0.00 0.00 40.07 6.13
467 634 1.423584 AAGCCCCCAAAACTTCAAGG 58.576 50.000 0.00 0.00 0.00 3.61
474 641 1.070134 GACCAAGAAAGCCCCCAAAAC 59.930 52.381 0.00 0.00 0.00 2.43
495 666 6.460781 ACGTGACTAAGTTATTCATCCACAA 58.539 36.000 6.26 0.00 0.00 3.33
496 667 6.032956 ACGTGACTAAGTTATTCATCCACA 57.967 37.500 6.26 0.00 0.00 4.17
497 668 6.588756 TGAACGTGACTAAGTTATTCATCCAC 59.411 38.462 6.26 0.00 0.00 4.02
498 669 6.693466 TGAACGTGACTAAGTTATTCATCCA 58.307 36.000 6.26 1.28 0.00 3.41
499 670 7.117236 TGTTGAACGTGACTAAGTTATTCATCC 59.883 37.037 6.26 0.00 0.00 3.51
500 671 8.014322 TGTTGAACGTGACTAAGTTATTCATC 57.986 34.615 6.26 1.93 0.00 2.92
501 672 7.117812 CCTGTTGAACGTGACTAAGTTATTCAT 59.882 37.037 6.26 0.00 0.00 2.57
502 673 6.422701 CCTGTTGAACGTGACTAAGTTATTCA 59.577 38.462 0.00 0.00 0.00 2.57
503 674 6.128634 CCCTGTTGAACGTGACTAAGTTATTC 60.129 42.308 0.00 0.00 0.00 1.75
504 675 5.699458 CCCTGTTGAACGTGACTAAGTTATT 59.301 40.000 0.00 0.00 0.00 1.40
505 676 5.011329 TCCCTGTTGAACGTGACTAAGTTAT 59.989 40.000 0.00 0.00 0.00 1.89
506 677 4.341806 TCCCTGTTGAACGTGACTAAGTTA 59.658 41.667 0.00 0.00 0.00 2.24
507 678 3.133362 TCCCTGTTGAACGTGACTAAGTT 59.867 43.478 0.00 0.00 0.00 2.66
508 679 2.696707 TCCCTGTTGAACGTGACTAAGT 59.303 45.455 0.00 0.00 0.00 2.24
509 680 3.380479 TCCCTGTTGAACGTGACTAAG 57.620 47.619 0.00 0.00 0.00 2.18
510 681 3.322541 TCATCCCTGTTGAACGTGACTAA 59.677 43.478 0.00 0.00 0.00 2.24
511 682 2.894765 TCATCCCTGTTGAACGTGACTA 59.105 45.455 0.00 0.00 0.00 2.59
512 683 1.691976 TCATCCCTGTTGAACGTGACT 59.308 47.619 0.00 0.00 0.00 3.41
513 684 2.163818 TCATCCCTGTTGAACGTGAC 57.836 50.000 0.00 0.00 0.00 3.67
514 685 2.489971 GTTCATCCCTGTTGAACGTGA 58.510 47.619 0.00 0.00 42.35 4.35
515 686 2.969443 GTTCATCCCTGTTGAACGTG 57.031 50.000 0.00 0.00 42.35 4.49
533 704 0.533755 GGACAAGTGTCAGCTGCAGT 60.534 55.000 16.64 10.60 46.47 4.40
556 738 2.315925 TACATGCTAGCTGCTGAACC 57.684 50.000 17.23 0.00 43.37 3.62
566 748 7.086376 AGCTGTTTCATTTGTTTACATGCTAG 58.914 34.615 0.00 0.00 0.00 3.42
668 857 1.795286 GGTTCAGAAGCTTCACTGTCG 59.205 52.381 27.57 9.04 35.84 4.35
688 877 1.602311 AAAGCTTGACTGCCTGACTG 58.398 50.000 0.00 0.00 0.00 3.51
699 888 6.058833 TGTGGTGATTAGTACAAAAGCTTGA 58.941 36.000 0.00 0.00 36.33 3.02
700 889 6.312399 TGTGGTGATTAGTACAAAAGCTTG 57.688 37.500 0.00 0.00 38.61 4.01
703 892 6.067263 TGTTGTGGTGATTAGTACAAAAGC 57.933 37.500 0.00 0.00 35.12 3.51
710 899 6.119536 GGATGGATTGTTGTGGTGATTAGTA 58.880 40.000 0.00 0.00 0.00 1.82
719 908 4.018490 TGAGAATGGATGGATTGTTGTGG 58.982 43.478 0.00 0.00 0.00 4.17
720 909 5.648178 TTGAGAATGGATGGATTGTTGTG 57.352 39.130 0.00 0.00 0.00 3.33
723 912 6.497954 TCCTTTTTGAGAATGGATGGATTGTT 59.502 34.615 0.00 0.00 0.00 2.83
724 913 6.018469 TCCTTTTTGAGAATGGATGGATTGT 58.982 36.000 0.00 0.00 0.00 2.71
725 914 6.534475 TCCTTTTTGAGAATGGATGGATTG 57.466 37.500 0.00 0.00 0.00 2.67
726 915 7.557875 TTTCCTTTTTGAGAATGGATGGATT 57.442 32.000 0.00 0.00 0.00 3.01
727 916 7.557875 TTTTCCTTTTTGAGAATGGATGGAT 57.442 32.000 0.00 0.00 0.00 3.41
728 917 6.992664 TTTTCCTTTTTGAGAATGGATGGA 57.007 33.333 0.00 0.00 0.00 3.41
809 998 2.509561 GGCGCGAACTCTCCTTCC 60.510 66.667 12.10 0.00 0.00 3.46
838 1027 2.701163 GAAGATGGTCTAGCCGGCGG 62.701 65.000 24.35 24.35 41.21 6.13
842 1031 2.287069 CGTGTAGAAGATGGTCTAGCCG 60.287 54.545 0.00 0.00 41.21 5.52
863 1052 3.652539 TAACCTGTACTGCGCCGCC 62.653 63.158 6.63 0.00 0.00 6.13
923 1118 0.036010 AGCATGGTAAGCAAGCTCGT 60.036 50.000 0.00 0.00 0.00 4.18
942 1137 0.177141 GTTACTGGCCTACGCATGGA 59.823 55.000 3.32 0.00 36.38 3.41
943 1138 0.178068 AGTTACTGGCCTACGCATGG 59.822 55.000 3.32 0.00 36.38 3.66
944 1139 1.134818 TCAGTTACTGGCCTACGCATG 60.135 52.381 12.79 0.00 36.38 4.06
945 1140 1.134788 GTCAGTTACTGGCCTACGCAT 60.135 52.381 12.79 0.00 36.38 4.73
946 1141 0.245539 GTCAGTTACTGGCCTACGCA 59.754 55.000 12.79 0.00 36.38 5.24
947 1142 0.531200 AGTCAGTTACTGGCCTACGC 59.469 55.000 13.78 0.00 36.67 4.42
1019 1214 2.555547 GCCGCAAGCACAAGGAAGT 61.556 57.895 0.00 0.00 42.97 3.01
1065 1260 1.856629 CCATGGAATCAGCCAAGGTT 58.143 50.000 5.56 0.00 40.92 3.50
1073 1268 0.740737 GGGTTTCGCCATGGAATCAG 59.259 55.000 18.40 0.30 39.65 2.90
1117 1312 1.024579 ATGCGGTCGCGGAGAAAAAT 61.025 50.000 6.13 0.00 45.51 1.82
1165 1360 3.368948 GCTTGAGTTTCTGGTCCTAGAGG 60.369 52.174 0.00 0.00 0.00 3.69
1193 1388 2.929592 GCAACGTTAAGGTCGGAGTCAT 60.930 50.000 0.00 0.00 0.00 3.06
1238 1433 0.037326 ATCGTTGCACGGTGACTGAT 60.037 50.000 13.29 6.09 42.81 2.90
1282 1477 6.292008 CGATTGATGCTCACACTATAGTTGTG 60.292 42.308 20.46 20.46 40.87 3.33
1288 1483 5.858581 CGATTCGATTGATGCTCACACTATA 59.141 40.000 0.00 0.00 0.00 1.31
1293 1488 3.163630 TCGATTCGATTGATGCTCACA 57.836 42.857 4.29 0.00 0.00 3.58
1294 1489 4.050089 CATCGATTCGATTGATGCTCAC 57.950 45.455 18.52 0.00 44.59 3.51
1300 1495 4.129380 TCTTTGGCATCGATTCGATTGAT 58.871 39.130 18.52 0.00 44.59 2.57
1306 1501 4.051237 TGTCTATCTTTGGCATCGATTCG 58.949 43.478 0.00 0.00 0.00 3.34
1307 1502 5.755375 TCTTGTCTATCTTTGGCATCGATTC 59.245 40.000 0.00 0.00 0.00 2.52
1308 1503 5.674525 TCTTGTCTATCTTTGGCATCGATT 58.325 37.500 0.00 0.00 0.00 3.34
1309 1504 5.282055 TCTTGTCTATCTTTGGCATCGAT 57.718 39.130 0.00 0.00 0.00 3.59
1310 1505 4.736126 TCTTGTCTATCTTTGGCATCGA 57.264 40.909 0.00 0.00 0.00 3.59
1312 1507 4.319333 CGCATCTTGTCTATCTTTGGCATC 60.319 45.833 0.00 0.00 0.00 3.91
1313 1508 3.562973 CGCATCTTGTCTATCTTTGGCAT 59.437 43.478 0.00 0.00 0.00 4.40
1314 1509 2.938451 CGCATCTTGTCTATCTTTGGCA 59.062 45.455 0.00 0.00 0.00 4.92
1317 1512 3.002042 CCTGCGCATCTTGTCTATCTTTG 59.998 47.826 12.24 0.00 0.00 2.77
1318 1513 3.201290 CCTGCGCATCTTGTCTATCTTT 58.799 45.455 12.24 0.00 0.00 2.52
1321 1516 1.863454 CACCTGCGCATCTTGTCTATC 59.137 52.381 12.24 0.00 0.00 2.08
1323 1518 0.108186 CCACCTGCGCATCTTGTCTA 60.108 55.000 12.24 0.00 0.00 2.59
1324 1519 1.376424 CCACCTGCGCATCTTGTCT 60.376 57.895 12.24 0.00 0.00 3.41
1325 1520 1.639298 GACCACCTGCGCATCTTGTC 61.639 60.000 12.24 12.38 0.00 3.18
1326 1521 1.672356 GACCACCTGCGCATCTTGT 60.672 57.895 12.24 6.51 0.00 3.16
1327 1522 1.376424 AGACCACCTGCGCATCTTG 60.376 57.895 12.24 8.39 0.00 3.02
1328 1523 1.376424 CAGACCACCTGCGCATCTT 60.376 57.895 12.24 0.00 35.89 2.40
1329 1524 2.267006 CAGACCACCTGCGCATCT 59.733 61.111 12.24 7.77 35.89 2.90
1330 1525 2.821366 CCAGACCACCTGCGCATC 60.821 66.667 12.24 4.91 41.57 3.91
1331 1526 3.612247 GACCAGACCACCTGCGCAT 62.612 63.158 12.24 0.00 41.57 4.73
1422 1617 1.134401 ACAGGGCTACCATCGTCATTG 60.134 52.381 0.00 0.00 40.13 2.82
1423 1618 1.139058 GACAGGGCTACCATCGTCATT 59.861 52.381 0.00 0.00 40.13 2.57
1428 1623 1.330655 ACCAGACAGGGCTACCATCG 61.331 60.000 0.00 0.00 43.89 3.84
1439 1634 4.007644 TGCCGCTGGACCAGACAG 62.008 66.667 26.25 14.43 38.95 3.51
1472 1667 0.678684 TGTCATCACCATGCTGGCTG 60.679 55.000 2.50 0.00 42.67 4.85
1477 1672 3.014623 CAATGTCTGTCATCACCATGCT 58.985 45.455 0.00 0.00 35.48 3.79
1488 1683 3.254166 ACACAAGATTGCCAATGTCTGTC 59.746 43.478 0.00 0.00 0.00 3.51
1491 1686 3.638160 ACAACACAAGATTGCCAATGTCT 59.362 39.130 0.00 0.00 0.00 3.41
1506 1701 3.744238 TTCCTCTGATCGAACAACACA 57.256 42.857 0.00 0.00 0.00 3.72
1532 1727 4.284829 TGATCAAATGACTGCCACACTA 57.715 40.909 0.00 0.00 0.00 2.74
1570 1765 0.689623 AGAAGTGACTGCCCAAGGAG 59.310 55.000 0.00 0.00 0.00 3.69
1591 1786 4.829492 ACTTGCTTTCAGCTTCATACCTTT 59.171 37.500 0.00 0.00 42.97 3.11
1605 1800 2.878406 TGTTGCAGAGGTACTTGCTTTC 59.122 45.455 15.09 8.49 41.55 2.62
1663 1861 1.925229 TAAGCACATAACCCGTACGC 58.075 50.000 10.49 0.00 0.00 4.42
1665 1863 4.871557 TCAACATAAGCACATAACCCGTAC 59.128 41.667 0.00 0.00 0.00 3.67
1666 1864 5.087391 TCAACATAAGCACATAACCCGTA 57.913 39.130 0.00 0.00 0.00 4.02
1668 1866 4.955925 TTCAACATAAGCACATAACCCG 57.044 40.909 0.00 0.00 0.00 5.28
1698 1896 2.038033 TGAACAGTAGTAGGGTTGTGGC 59.962 50.000 0.00 0.00 0.00 5.01
1733 1937 3.440173 TGGATCATTTCCTTTCTTGACGC 59.560 43.478 0.00 0.00 45.68 5.19
1736 1940 6.975196 TTGTTGGATCATTTCCTTTCTTGA 57.025 33.333 0.00 0.00 45.68 3.02
1774 1978 4.096081 CACAAAGAAGATGAGGCTTCCATC 59.904 45.833 7.86 7.86 44.14 3.51
1789 1996 6.880529 TCATGATAATCTGACTGCACAAAGAA 59.119 34.615 0.00 0.00 0.00 2.52
1826 2045 0.679960 GGTGGATGTAGTGGTTGGCC 60.680 60.000 0.00 0.00 0.00 5.36
1833 2052 0.615331 ACTGCTGGGTGGATGTAGTG 59.385 55.000 0.00 0.00 0.00 2.74
1838 2057 1.210234 TCATGTACTGCTGGGTGGATG 59.790 52.381 0.00 0.00 0.00 3.51
1846 2065 6.982724 TCTGAATCTAATGTCATGTACTGCTG 59.017 38.462 0.00 0.00 0.00 4.41
1847 2066 7.117285 TCTGAATCTAATGTCATGTACTGCT 57.883 36.000 0.00 0.00 0.00 4.24
1848 2067 7.095313 CCATCTGAATCTAATGTCATGTACTGC 60.095 40.741 0.00 0.00 0.00 4.40
1859 2078 9.589111 CTCTCATATGTCCATCTGAATCTAATG 57.411 37.037 1.90 0.00 0.00 1.90
1878 2097 7.846101 ATCAGACCATTCATACACTCTCATA 57.154 36.000 0.00 0.00 0.00 2.15
1947 2184 0.165944 CGCAGACTTTTGGGTAAGCG 59.834 55.000 0.00 0.00 36.69 4.68
1958 2195 2.178521 CGTAGTCCGCGCAGACTT 59.821 61.111 29.69 14.79 44.83 3.01
1967 2204 1.284982 GCTGCATATGCCGTAGTCCG 61.285 60.000 24.54 4.50 41.18 4.79
2024 2267 3.927142 CACCGGCTTGAAGTAGTCTAAAG 59.073 47.826 0.00 0.00 0.00 1.85
2027 2270 1.822990 CCACCGGCTTGAAGTAGTCTA 59.177 52.381 0.00 0.00 0.00 2.59
2029 2272 0.606604 TCCACCGGCTTGAAGTAGTC 59.393 55.000 0.00 0.00 0.00 2.59
2030 2273 1.066143 CATCCACCGGCTTGAAGTAGT 60.066 52.381 0.00 0.00 0.00 2.73
2091 2334 7.361201 CGATGGTGTTGTATTTCTTGACAAGAT 60.361 37.037 18.38 7.57 36.28 2.40
2167 2410 9.307121 CTTACAGTCATCTTCGTCTAAATTCAT 57.693 33.333 0.00 0.00 0.00 2.57
2176 2422 3.182967 CCTGCTTACAGTCATCTTCGTC 58.817 50.000 0.00 0.00 42.81 4.20
2196 2442 0.892814 AGCAGTTCTTCAAGCAGGCC 60.893 55.000 0.00 0.00 0.00 5.19
2220 2466 4.682778 ATAGCTGAACATAACGGCCTTA 57.317 40.909 0.00 0.00 40.10 2.69
2249 2495 0.674534 GGTACATCTGCTAGGACCCG 59.325 60.000 0.00 0.00 0.00 5.28
2276 2525 3.378742 TGCTTGCAAGGAAAAGACGTTTA 59.621 39.130 27.10 0.00 0.00 2.01
2280 2529 2.490328 TTGCTTGCAAGGAAAAGACG 57.510 45.000 28.47 1.46 33.23 4.18
2286 2535 3.005684 CAGGTTGTATTGCTTGCAAGGAA 59.994 43.478 31.66 31.66 40.68 3.36
2421 2697 6.005583 ACAATGACAAGCAATACAAGAGTG 57.994 37.500 0.00 0.00 0.00 3.51
2471 2747 4.534168 CTCGTCTTTGTCTTCGTACTTCA 58.466 43.478 0.00 0.00 0.00 3.02
2505 2787 3.985127 TGGCATTCCAGGAAATTGATCT 58.015 40.909 5.81 0.00 37.47 2.75
2551 2833 2.223203 CGAATCCTTCAGTGCATTCTGC 60.223 50.000 0.00 0.00 45.29 4.26
2640 2922 3.018149 AGCACCTTCCAAACGTTTTACA 58.982 40.909 11.66 0.00 0.00 2.41
2742 3024 3.126001 TCCGACTTCTCTGCACAAAAT 57.874 42.857 0.00 0.00 0.00 1.82
2836 3119 1.427020 GAGTGCGCCAATCAAGAGC 59.573 57.895 4.18 0.00 0.00 4.09
2848 3131 5.333339 CCAATATGATCCTAAAACGAGTGCG 60.333 44.000 0.00 0.00 44.79 5.34
2858 3141 7.835682 CCTTGGCAATATCCAATATGATCCTAA 59.164 37.037 0.00 0.00 44.39 2.69
3332 3617 0.400213 TTGACATTGAAGGCCTCCGT 59.600 50.000 5.23 0.00 0.00 4.69
3335 3620 2.227388 CACTGTTGACATTGAAGGCCTC 59.773 50.000 5.23 0.00 0.00 4.70
3382 3667 8.537049 TGAATTTGCATCAAAAGTTTCTATGG 57.463 30.769 10.50 0.00 36.90 2.74
3514 3826 7.256286 ACAAATATGCAAAAGCAAAAGCAAAA 58.744 26.923 0.00 0.00 40.76 2.44
3515 3827 6.793349 ACAAATATGCAAAAGCAAAAGCAAA 58.207 28.000 0.00 0.00 40.76 3.68
3516 3828 6.374565 ACAAATATGCAAAAGCAAAAGCAA 57.625 29.167 0.00 0.00 40.76 3.91
3517 3829 7.670009 ATACAAATATGCAAAAGCAAAAGCA 57.330 28.000 0.00 0.00 41.73 3.91
3518 3830 8.016801 ACAATACAAATATGCAAAAGCAAAAGC 58.983 29.630 0.00 0.00 0.00 3.51
3672 3991 9.174166 ACAGTCACTAACAAATGTAGTTTTTCT 57.826 29.630 0.00 0.00 0.00 2.52
3675 3994 9.174166 AGAACAGTCACTAACAAATGTAGTTTT 57.826 29.630 0.00 0.00 0.00 2.43
3697 4137 7.173218 TGAATTTGCGGATGGATTATCTAGAAC 59.827 37.037 0.00 0.00 36.03 3.01
3729 4169 1.668419 GTTAATGCTGGACGGATGCT 58.332 50.000 0.00 0.00 0.00 3.79
3806 4246 7.899973 AGCATACCATCTTTGTGAAAAGAAAT 58.100 30.769 5.11 0.00 41.57 2.17
3941 4381 4.820894 AGTATGTACCACTTTCCACCTC 57.179 45.455 0.00 0.00 0.00 3.85
3944 4384 8.036575 TGTTATGTAGTATGTACCACTTTCCAC 58.963 37.037 2.87 0.00 0.00 4.02
4006 4446 3.910767 CGAATTTTCAGACTTTCAGCTGC 59.089 43.478 9.47 0.00 32.27 5.25
4016 4456 5.807011 CCAATTCCCAATCGAATTTTCAGAC 59.193 40.000 0.00 0.00 39.82 3.51
4025 4507 3.088532 CAGAACCCAATTCCCAATCGAA 58.911 45.455 0.00 0.00 38.16 3.71
4138 8128 1.779569 TTTTTCGCCTCAGTCGTCTC 58.220 50.000 0.00 0.00 0.00 3.36
4139 8129 3.980583 TTTTTCGCCTCAGTCGTCT 57.019 47.368 0.00 0.00 0.00 4.18
4154 8144 0.405973 GGAGGGAGTCCAGCCTTTTT 59.594 55.000 12.30 0.00 46.10 1.94
4156 8146 3.827752 GGAGGGAGTCCAGCCTTT 58.172 61.111 12.30 0.00 46.10 3.11
4164 8154 2.123640 CGGGAGAGGGAGGGAGTC 60.124 72.222 0.00 0.00 0.00 3.36
4165 8155 2.617538 TCGGGAGAGGGAGGGAGT 60.618 66.667 0.00 0.00 0.00 3.85
4166 8156 2.123640 GTCGGGAGAGGGAGGGAG 60.124 72.222 0.00 0.00 41.26 4.30
4167 8157 2.617538 AGTCGGGAGAGGGAGGGA 60.618 66.667 0.00 0.00 41.26 4.20
4169 8159 2.123640 GGAGTCGGGAGAGGGAGG 60.124 72.222 0.00 0.00 41.26 4.30
4170 8160 2.517402 CGGAGTCGGGAGAGGGAG 60.517 72.222 0.00 0.00 41.26 4.30
4171 8161 4.816984 GCGGAGTCGGGAGAGGGA 62.817 72.222 0.00 0.00 41.26 4.20
4174 8164 3.213402 GAGGCGGAGTCGGGAGAG 61.213 72.222 0.00 0.00 41.26 3.20
4222 8212 1.524849 GGAAAGGATGCGGAGGAGC 60.525 63.158 0.00 0.00 37.71 4.70
4223 8213 0.105778 GAGGAAAGGATGCGGAGGAG 59.894 60.000 0.00 0.00 0.00 3.69
4224 8214 1.676678 CGAGGAAAGGATGCGGAGGA 61.677 60.000 0.00 0.00 0.00 3.71
4225 8215 1.227380 CGAGGAAAGGATGCGGAGG 60.227 63.158 0.00 0.00 0.00 4.30
4226 8216 1.884926 GCGAGGAAAGGATGCGGAG 60.885 63.158 0.00 0.00 0.00 4.63
4227 8217 2.186903 GCGAGGAAAGGATGCGGA 59.813 61.111 0.00 0.00 0.00 5.54
4228 8218 2.897350 GGCGAGGAAAGGATGCGG 60.897 66.667 0.00 0.00 0.00 5.69
4229 8219 2.897350 GGGCGAGGAAAGGATGCG 60.897 66.667 0.00 0.00 0.00 4.73
4230 8220 2.517166 GGGGCGAGGAAAGGATGC 60.517 66.667 0.00 0.00 0.00 3.91
4231 8221 2.193248 GGGGGCGAGGAAAGGATG 59.807 66.667 0.00 0.00 0.00 3.51
4232 8222 2.286121 TGGGGGCGAGGAAAGGAT 60.286 61.111 0.00 0.00 0.00 3.24
4233 8223 3.327404 GTGGGGGCGAGGAAAGGA 61.327 66.667 0.00 0.00 0.00 3.36
4234 8224 4.426313 GGTGGGGGCGAGGAAAGG 62.426 72.222 0.00 0.00 0.00 3.11
4235 8225 4.426313 GGGTGGGGGCGAGGAAAG 62.426 72.222 0.00 0.00 0.00 2.62
4245 8235 3.400054 GAGAACGGAGGGGTGGGG 61.400 72.222 0.00 0.00 0.00 4.96
4247 8237 3.400054 GGGAGAACGGAGGGGTGG 61.400 72.222 0.00 0.00 0.00 4.61
4248 8238 2.284699 AGGGAGAACGGAGGGGTG 60.285 66.667 0.00 0.00 0.00 4.61
4249 8239 2.039137 GAGGGAGAACGGAGGGGT 59.961 66.667 0.00 0.00 0.00 4.95
4250 8240 2.764547 GGAGGGAGAACGGAGGGG 60.765 72.222 0.00 0.00 0.00 4.79
4254 8244 4.772231 CGGGGGAGGGAGAACGGA 62.772 72.222 0.00 0.00 0.00 4.69
4291 8281 4.181010 CCACCTGGCCAGATCCGG 62.181 72.222 34.91 22.43 0.00 5.14
4317 8307 3.440415 GGAAAAGAAGGCCCGCCG 61.440 66.667 0.00 0.00 41.95 6.46
4318 8308 3.068691 GGGAAAAGAAGGCCCGCC 61.069 66.667 0.00 0.00 31.06 6.13
4319 8309 3.068691 GGGGAAAAGAAGGCCCGC 61.069 66.667 0.00 0.00 42.99 6.13
4320 8310 2.362503 GGGGGAAAAGAAGGCCCG 60.363 66.667 0.00 0.00 42.99 6.13
4321 8311 2.362503 CGGGGGAAAAGAAGGCCC 60.363 66.667 0.00 0.00 41.28 5.80
4322 8312 3.068691 GCGGGGGAAAAGAAGGCC 61.069 66.667 0.00 0.00 0.00 5.19
4323 8313 3.440415 CGCGGGGGAAAAGAAGGC 61.440 66.667 0.00 0.00 0.00 4.35
4324 8314 3.440415 GCGCGGGGGAAAAGAAGG 61.440 66.667 8.83 0.00 0.00 3.46
4396 8386 4.736896 GTCACCAGGACGCCGGAC 62.737 72.222 5.05 0.00 36.65 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.