Multiple sequence alignment - TraesCS6D01G386100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G386100 chr6D 100.000 5904 0 0 1 5904 463747552 463741649 0.000000e+00 10903.0
1 TraesCS6D01G386100 chr6B 93.420 1930 77 25 3244 5162 707026070 707027960 0.000000e+00 2815.0
2 TraesCS6D01G386100 chr6B 86.866 1104 87 33 401 1485 707024441 707025505 0.000000e+00 1182.0
3 TraesCS6D01G386100 chr6B 88.699 469 32 8 1596 2053 707025617 707026075 2.400000e-153 553.0
4 TraesCS6D01G386100 chr6B 94.697 132 6 1 5312 5443 707028121 707028251 2.790000e-48 204.0
5 TraesCS6D01G386100 chr6B 95.146 103 4 1 1476 1577 714087515 714087413 1.700000e-35 161.0
6 TraesCS6D01G386100 chr6B 100.000 43 0 0 1697 1739 707188043 707188001 4.900000e-11 80.5
7 TraesCS6D01G386100 chr6A 94.391 1676 67 10 3628 5284 610350236 610348569 0.000000e+00 2549.0
8 TraesCS6D01G386100 chr6A 89.949 587 27 5 1475 2056 610351292 610350733 0.000000e+00 728.0
9 TraesCS6D01G386100 chr6A 86.728 648 36 9 5275 5903 610348379 610347763 0.000000e+00 675.0
10 TraesCS6D01G386100 chr6A 85.814 571 42 13 917 1463 610351925 610351370 2.390000e-158 569.0
11 TraesCS6D01G386100 chr6A 84.737 380 25 13 532 887 610352295 610351925 3.390000e-92 350.0
12 TraesCS6D01G386100 chr6A 91.111 180 8 1 3244 3423 610350741 610350570 2.750000e-58 237.0
13 TraesCS6D01G386100 chr6A 94.340 106 5 1 3531 3635 610350418 610350313 1.700000e-35 161.0
14 TraesCS6D01G386100 chr6A 96.970 33 1 0 3837 3869 610350537 610350505 8.270000e-04 56.5
15 TraesCS6D01G386100 chr1D 98.738 1189 13 2 2056 3243 404142947 404141760 0.000000e+00 2111.0
16 TraesCS6D01G386100 chr7D 98.069 1191 20 3 2056 3244 87487250 87488439 0.000000e+00 2069.0
17 TraesCS6D01G386100 chr1B 80.407 541 69 25 1509 2036 44934492 44933976 1.550000e-100 377.0
18 TraesCS6D01G386100 chr7B 84.337 249 34 5 2395 2641 437676775 437677020 7.650000e-59 239.0
19 TraesCS6D01G386100 chr4D 83.065 248 34 6 2401 2644 455086420 455086177 9.960000e-53 219.0
20 TraesCS6D01G386100 chr1A 75.585 299 35 23 4347 4636 563422991 563422722 4.840000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G386100 chr6D 463741649 463747552 5903 True 10903.0000 10903 100.0000 1 5904 1 chr6D.!!$R1 5903
1 TraesCS6D01G386100 chr6B 707024441 707028251 3810 False 1188.5000 2815 90.9205 401 5443 4 chr6B.!!$F1 5042
2 TraesCS6D01G386100 chr6A 610347763 610352295 4532 True 665.6875 2549 90.5050 532 5903 8 chr6A.!!$R1 5371
3 TraesCS6D01G386100 chr1D 404141760 404142947 1187 True 2111.0000 2111 98.7380 2056 3243 1 chr1D.!!$R1 1187
4 TraesCS6D01G386100 chr7D 87487250 87488439 1189 False 2069.0000 2069 98.0690 2056 3244 1 chr7D.!!$F1 1188
5 TraesCS6D01G386100 chr1B 44933976 44934492 516 True 377.0000 377 80.4070 1509 2036 1 chr1B.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.029567 ATCTAAGCTCTCCGTTCGCG 59.970 55.000 0.00 0.0 40.93 5.87 F
486 487 0.105760 TTTGTGCCTTGGTCCCACAT 60.106 50.000 0.20 0.0 39.03 3.21 F
677 687 0.244178 GAGTGTGACGGAACTCCTCC 59.756 60.000 0.00 0.0 41.40 4.30 F
954 979 0.387750 GCTTGTGTTGCTAAGCAGGC 60.388 55.000 0.00 0.0 46.43 4.85 F
1282 1307 0.534877 TTGTGTGTTCGGCAGCTGAT 60.535 50.000 20.43 0.0 0.00 2.90 F
1306 1337 1.443194 CTGTGTGGCTTCGCATTGC 60.443 57.895 0.00 0.0 33.11 3.56 F
3252 3413 0.034059 AGCAGCCGCCATAGATACAC 59.966 55.000 0.00 0.0 39.83 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1234 0.095245 CACCATACACTGAAAGCGCG 59.905 55.000 0.00 0.0 37.60 6.86 R
1416 1464 0.250038 GAGCAGCACCAACTGACTCA 60.250 55.000 0.00 0.0 40.25 3.41 R
2002 2161 1.285667 TCAGGCCCATGTCATCACAAT 59.714 47.619 0.00 0.0 35.64 2.71 R
2072 2231 2.174319 GCGAAAGATCAGCCGGGTC 61.174 63.158 1.27 0.0 0.00 4.46 R
3130 3291 0.306840 CCACACATCGCATCATGCTC 59.693 55.000 8.30 0.0 42.25 4.26 R
3367 3528 6.262273 AGGCATATATAAAACCCAACAACTCG 59.738 38.462 0.00 0.0 0.00 4.18 R
5300 5865 0.179119 GCATCCACCATTGCTCTTGC 60.179 55.000 0.00 0.0 35.95 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.708726 GCAAAAAGGTGCTCATATGACT 57.291 40.909 0.00 0.00 41.51 3.41
26 27 4.418392 GCAAAAAGGTGCTCATATGACTG 58.582 43.478 0.00 0.00 41.51 3.51
27 28 4.676196 GCAAAAAGGTGCTCATATGACTGG 60.676 45.833 0.00 0.00 41.51 4.00
28 29 4.574674 AAAAGGTGCTCATATGACTGGA 57.425 40.909 0.00 0.00 0.00 3.86
29 30 3.550437 AAGGTGCTCATATGACTGGAC 57.450 47.619 0.00 4.73 0.00 4.02
30 31 2.470990 AGGTGCTCATATGACTGGACA 58.529 47.619 15.40 2.49 0.00 4.02
31 32 3.044156 AGGTGCTCATATGACTGGACAT 58.956 45.455 15.40 8.04 0.00 3.06
32 33 4.226384 AGGTGCTCATATGACTGGACATA 58.774 43.478 15.40 0.00 37.20 2.29
33 34 4.842948 AGGTGCTCATATGACTGGACATAT 59.157 41.667 15.40 0.00 42.07 1.78
34 35 6.019108 AGGTGCTCATATGACTGGACATATA 58.981 40.000 15.40 0.00 40.20 0.86
35 36 6.071108 AGGTGCTCATATGACTGGACATATAC 60.071 42.308 15.40 2.05 40.20 1.47
36 37 6.295292 GGTGCTCATATGACTGGACATATACA 60.295 42.308 15.40 0.00 40.20 2.29
37 38 7.326454 GTGCTCATATGACTGGACATATACAT 58.674 38.462 0.00 0.00 40.20 2.29
38 39 7.821359 GTGCTCATATGACTGGACATATACATT 59.179 37.037 0.00 0.00 40.20 2.71
39 40 7.820872 TGCTCATATGACTGGACATATACATTG 59.179 37.037 0.00 0.00 40.20 2.82
40 41 7.821359 GCTCATATGACTGGACATATACATTGT 59.179 37.037 0.00 0.00 40.20 2.71
41 42 9.148104 CTCATATGACTGGACATATACATTGTG 57.852 37.037 0.00 0.00 40.20 3.33
42 43 8.096414 TCATATGACTGGACATATACATTGTGG 58.904 37.037 0.00 0.00 40.20 4.17
43 44 5.948742 TGACTGGACATATACATTGTGGA 57.051 39.130 0.00 0.00 0.00 4.02
44 45 5.917462 TGACTGGACATATACATTGTGGAG 58.083 41.667 0.00 0.00 0.00 3.86
45 46 5.163311 TGACTGGACATATACATTGTGGAGG 60.163 44.000 0.00 0.00 0.00 4.30
46 47 4.721776 ACTGGACATATACATTGTGGAGGT 59.278 41.667 0.00 0.00 0.00 3.85
47 48 5.191722 ACTGGACATATACATTGTGGAGGTT 59.808 40.000 0.00 0.00 0.00 3.50
48 49 6.385759 ACTGGACATATACATTGTGGAGGTTA 59.614 38.462 0.00 0.00 0.00 2.85
49 50 7.092623 ACTGGACATATACATTGTGGAGGTTAA 60.093 37.037 0.00 0.00 0.00 2.01
50 51 7.051623 TGGACATATACATTGTGGAGGTTAAC 58.948 38.462 0.00 0.00 0.00 2.01
51 52 6.485648 GGACATATACATTGTGGAGGTTAACC 59.514 42.308 17.41 17.41 0.00 2.85
75 76 4.439253 AAGAACAAGTCTTAAGGGCAGT 57.561 40.909 1.85 0.00 45.18 4.40
76 77 4.009370 AGAACAAGTCTTAAGGGCAGTC 57.991 45.455 1.85 0.00 29.66 3.51
77 78 3.391296 AGAACAAGTCTTAAGGGCAGTCA 59.609 43.478 1.85 0.00 29.66 3.41
78 79 4.042187 AGAACAAGTCTTAAGGGCAGTCAT 59.958 41.667 1.85 0.00 29.66 3.06
79 80 3.944087 ACAAGTCTTAAGGGCAGTCATC 58.056 45.455 1.85 0.00 0.00 2.92
80 81 2.932614 CAAGTCTTAAGGGCAGTCATCG 59.067 50.000 1.85 0.00 0.00 3.84
81 82 1.482593 AGTCTTAAGGGCAGTCATCGG 59.517 52.381 1.85 0.00 0.00 4.18
82 83 0.830648 TCTTAAGGGCAGTCATCGGG 59.169 55.000 1.85 0.00 0.00 5.14
83 84 0.179045 CTTAAGGGCAGTCATCGGGG 60.179 60.000 0.00 0.00 0.00 5.73
84 85 2.265467 TTAAGGGCAGTCATCGGGGC 62.265 60.000 0.00 0.00 0.00 5.80
86 87 4.115199 GGGCAGTCATCGGGGCTT 62.115 66.667 0.00 0.00 0.00 4.35
87 88 2.742116 GGGCAGTCATCGGGGCTTA 61.742 63.158 0.00 0.00 0.00 3.09
88 89 1.523938 GGCAGTCATCGGGGCTTAC 60.524 63.158 0.00 0.00 0.00 2.34
89 90 1.522569 GCAGTCATCGGGGCTTACT 59.477 57.895 0.00 0.00 0.00 2.24
90 91 0.107654 GCAGTCATCGGGGCTTACTT 60.108 55.000 0.00 0.00 0.00 2.24
91 92 1.679032 GCAGTCATCGGGGCTTACTTT 60.679 52.381 0.00 0.00 0.00 2.66
92 93 2.419574 GCAGTCATCGGGGCTTACTTTA 60.420 50.000 0.00 0.00 0.00 1.85
93 94 3.744530 GCAGTCATCGGGGCTTACTTTAT 60.745 47.826 0.00 0.00 0.00 1.40
94 95 4.502604 GCAGTCATCGGGGCTTACTTTATA 60.503 45.833 0.00 0.00 0.00 0.98
95 96 5.230942 CAGTCATCGGGGCTTACTTTATAG 58.769 45.833 0.00 0.00 0.00 1.31
96 97 3.995048 GTCATCGGGGCTTACTTTATAGC 59.005 47.826 0.00 0.00 36.66 2.97
97 98 3.644265 TCATCGGGGCTTACTTTATAGCA 59.356 43.478 0.00 0.00 39.15 3.49
98 99 4.101898 TCATCGGGGCTTACTTTATAGCAA 59.898 41.667 0.00 0.00 39.15 3.91
99 100 4.490899 TCGGGGCTTACTTTATAGCAAA 57.509 40.909 0.00 0.00 39.15 3.68
100 101 5.043737 TCGGGGCTTACTTTATAGCAAAT 57.956 39.130 0.00 0.00 39.15 2.32
101 102 4.819630 TCGGGGCTTACTTTATAGCAAATG 59.180 41.667 0.00 0.00 39.15 2.32
102 103 4.578928 CGGGGCTTACTTTATAGCAAATGT 59.421 41.667 0.00 0.00 39.15 2.71
103 104 5.761234 CGGGGCTTACTTTATAGCAAATGTA 59.239 40.000 0.00 0.00 39.15 2.29
104 105 6.261381 CGGGGCTTACTTTATAGCAAATGTAA 59.739 38.462 0.00 0.00 39.15 2.41
105 106 7.040686 CGGGGCTTACTTTATAGCAAATGTAAT 60.041 37.037 0.00 0.00 39.15 1.89
106 107 8.297426 GGGGCTTACTTTATAGCAAATGTAATC 58.703 37.037 0.00 0.00 39.15 1.75
107 108 9.067986 GGGCTTACTTTATAGCAAATGTAATCT 57.932 33.333 0.00 0.00 39.15 2.40
113 114 9.067986 ACTTTATAGCAAATGTAATCTTAGGGC 57.932 33.333 0.00 0.00 0.00 5.19
114 115 8.988546 TTTATAGCAAATGTAATCTTAGGGCA 57.011 30.769 0.00 0.00 0.00 5.36
115 116 9.586732 TTTATAGCAAATGTAATCTTAGGGCAT 57.413 29.630 0.00 0.00 0.00 4.40
116 117 5.779529 AGCAAATGTAATCTTAGGGCATG 57.220 39.130 0.00 0.00 0.00 4.06
117 118 5.203528 AGCAAATGTAATCTTAGGGCATGT 58.796 37.500 0.00 0.00 0.00 3.21
118 119 5.658190 AGCAAATGTAATCTTAGGGCATGTT 59.342 36.000 0.00 0.00 0.00 2.71
119 120 5.979517 GCAAATGTAATCTTAGGGCATGTTC 59.020 40.000 0.00 0.00 0.00 3.18
120 121 6.405731 GCAAATGTAATCTTAGGGCATGTTCA 60.406 38.462 0.00 0.00 0.00 3.18
121 122 7.546358 CAAATGTAATCTTAGGGCATGTTCAA 58.454 34.615 0.00 0.00 0.00 2.69
122 123 7.902920 AATGTAATCTTAGGGCATGTTCAAT 57.097 32.000 0.00 0.00 0.00 2.57
123 124 6.698008 TGTAATCTTAGGGCATGTTCAATG 57.302 37.500 0.00 0.00 0.00 2.82
124 125 4.660789 AATCTTAGGGCATGTTCAATGC 57.339 40.909 1.65 1.65 43.85 3.56
125 126 2.016318 TCTTAGGGCATGTTCAATGCG 58.984 47.619 4.37 0.00 45.41 4.73
126 127 1.066002 CTTAGGGCATGTTCAATGCGG 59.934 52.381 4.37 0.00 45.41 5.69
127 128 0.751277 TAGGGCATGTTCAATGCGGG 60.751 55.000 4.37 0.00 45.41 6.13
128 129 2.202783 GGCATGTTCAATGCGGGC 60.203 61.111 4.37 0.00 45.41 6.13
129 130 2.713967 GGCATGTTCAATGCGGGCT 61.714 57.895 4.37 0.00 45.41 5.19
130 131 1.226773 GCATGTTCAATGCGGGCTC 60.227 57.895 0.00 0.00 35.17 4.70
131 132 1.660560 GCATGTTCAATGCGGGCTCT 61.661 55.000 0.00 0.00 35.17 4.09
132 133 0.813184 CATGTTCAATGCGGGCTCTT 59.187 50.000 0.00 0.00 0.00 2.85
133 134 0.813184 ATGTTCAATGCGGGCTCTTG 59.187 50.000 0.00 0.00 0.00 3.02
134 135 1.153958 GTTCAATGCGGGCTCTTGC 60.154 57.895 0.00 0.00 38.76 4.01
148 149 3.940303 GCTCTTGCCATGTATGTAAACG 58.060 45.455 0.00 0.00 0.00 3.60
149 150 3.374058 GCTCTTGCCATGTATGTAAACGT 59.626 43.478 0.00 0.00 0.00 3.99
150 151 4.494199 GCTCTTGCCATGTATGTAAACGTC 60.494 45.833 0.00 0.00 0.00 4.34
151 152 3.615056 TCTTGCCATGTATGTAAACGTCG 59.385 43.478 0.00 0.00 0.00 5.12
152 153 3.233684 TGCCATGTATGTAAACGTCGA 57.766 42.857 0.00 0.00 0.00 4.20
153 154 3.183754 TGCCATGTATGTAAACGTCGAG 58.816 45.455 0.00 0.00 0.00 4.04
154 155 3.119424 TGCCATGTATGTAAACGTCGAGA 60.119 43.478 0.00 0.00 0.00 4.04
155 156 3.242248 GCCATGTATGTAAACGTCGAGAC 59.758 47.826 0.00 0.00 0.00 3.36
156 157 4.417506 CCATGTATGTAAACGTCGAGACA 58.582 43.478 0.00 0.00 0.00 3.41
157 158 4.264614 CCATGTATGTAAACGTCGAGACAC 59.735 45.833 0.00 0.00 0.00 3.67
158 159 3.481839 TGTATGTAAACGTCGAGACACG 58.518 45.455 0.00 0.00 45.65 4.49
164 165 2.354188 CGTCGAGACACGTGCCAA 60.354 61.111 17.22 0.00 43.13 4.52
165 166 1.733041 CGTCGAGACACGTGCCAAT 60.733 57.895 17.22 0.00 43.13 3.16
166 167 0.455464 CGTCGAGACACGTGCCAATA 60.455 55.000 17.22 0.00 43.13 1.90
167 168 1.797713 CGTCGAGACACGTGCCAATAT 60.798 52.381 17.22 0.00 43.13 1.28
168 169 2.540157 CGTCGAGACACGTGCCAATATA 60.540 50.000 17.22 0.00 43.13 0.86
169 170 3.043586 GTCGAGACACGTGCCAATATAG 58.956 50.000 17.22 0.00 43.13 1.31
170 171 2.686405 TCGAGACACGTGCCAATATAGT 59.314 45.455 17.22 0.00 43.13 2.12
171 172 3.129813 TCGAGACACGTGCCAATATAGTT 59.870 43.478 17.22 0.00 43.13 2.24
172 173 3.863424 CGAGACACGTGCCAATATAGTTT 59.137 43.478 17.22 0.00 37.22 2.66
173 174 4.259810 CGAGACACGTGCCAATATAGTTTG 60.260 45.833 17.22 0.00 37.22 2.93
174 175 7.187211 CGAGACACGTGCCAATATAGTTTGG 62.187 48.000 17.22 1.30 41.84 3.28
175 176 3.681593 ACACGTGCCAATATAGTTTGGT 58.318 40.909 17.22 0.00 46.54 3.67
176 177 4.076394 ACACGTGCCAATATAGTTTGGTT 58.924 39.130 17.22 0.00 46.54 3.67
177 178 4.521256 ACACGTGCCAATATAGTTTGGTTT 59.479 37.500 17.22 0.00 46.54 3.27
178 179 5.706369 ACACGTGCCAATATAGTTTGGTTTA 59.294 36.000 17.22 0.00 46.54 2.01
179 180 6.207025 ACACGTGCCAATATAGTTTGGTTTAA 59.793 34.615 17.22 0.00 46.54 1.52
180 181 7.085116 CACGTGCCAATATAGTTTGGTTTAAA 58.915 34.615 0.82 0.00 46.54 1.52
181 182 7.757624 CACGTGCCAATATAGTTTGGTTTAAAT 59.242 33.333 0.82 0.00 46.54 1.40
182 183 8.958506 ACGTGCCAATATAGTTTGGTTTAAATA 58.041 29.630 6.91 0.00 46.54 1.40
183 184 9.228636 CGTGCCAATATAGTTTGGTTTAAATAC 57.771 33.333 6.91 0.00 46.54 1.89
184 185 9.524106 GTGCCAATATAGTTTGGTTTAAATACC 57.476 33.333 6.91 0.00 46.54 2.73
185 186 9.256228 TGCCAATATAGTTTGGTTTAAATACCA 57.744 29.630 6.91 0.00 46.54 3.25
204 205 2.494059 CAGTCGGTGGAAATGTCTTGT 58.506 47.619 0.00 0.00 0.00 3.16
205 206 2.480419 CAGTCGGTGGAAATGTCTTGTC 59.520 50.000 0.00 0.00 0.00 3.18
206 207 1.804748 GTCGGTGGAAATGTCTTGTCC 59.195 52.381 0.00 0.00 0.00 4.02
207 208 1.165270 CGGTGGAAATGTCTTGTCCC 58.835 55.000 0.00 0.00 0.00 4.46
208 209 1.544537 CGGTGGAAATGTCTTGTCCCA 60.545 52.381 0.00 0.00 0.00 4.37
209 210 1.886542 GGTGGAAATGTCTTGTCCCAC 59.113 52.381 0.00 0.00 42.29 4.61
210 211 2.489073 GGTGGAAATGTCTTGTCCCACT 60.489 50.000 0.00 0.00 42.55 4.00
211 212 2.554032 GTGGAAATGTCTTGTCCCACTG 59.446 50.000 0.00 0.00 40.48 3.66
212 213 2.441375 TGGAAATGTCTTGTCCCACTGA 59.559 45.455 0.00 0.00 0.00 3.41
213 214 3.117701 TGGAAATGTCTTGTCCCACTGAA 60.118 43.478 0.00 0.00 0.00 3.02
214 215 4.082125 GGAAATGTCTTGTCCCACTGAAT 58.918 43.478 0.00 0.00 0.00 2.57
215 216 4.082571 GGAAATGTCTTGTCCCACTGAATG 60.083 45.833 0.00 0.00 0.00 2.67
216 217 1.896220 TGTCTTGTCCCACTGAATGC 58.104 50.000 0.00 0.00 0.00 3.56
217 218 1.142667 TGTCTTGTCCCACTGAATGCA 59.857 47.619 0.00 0.00 0.00 3.96
218 219 1.537202 GTCTTGTCCCACTGAATGCAC 59.463 52.381 0.00 0.00 0.00 4.57
219 220 1.142667 TCTTGTCCCACTGAATGCACA 59.857 47.619 0.00 0.00 0.00 4.57
220 221 2.165167 CTTGTCCCACTGAATGCACAT 58.835 47.619 0.00 0.00 0.00 3.21
221 222 1.825090 TGTCCCACTGAATGCACATC 58.175 50.000 0.00 0.00 0.00 3.06
222 223 0.729116 GTCCCACTGAATGCACATCG 59.271 55.000 0.00 0.00 0.00 3.84
223 224 0.324614 TCCCACTGAATGCACATCGT 59.675 50.000 0.00 0.00 0.00 3.73
224 225 0.729116 CCCACTGAATGCACATCGTC 59.271 55.000 0.00 0.00 0.00 4.20
225 226 1.441738 CCACTGAATGCACATCGTCA 58.558 50.000 0.00 0.00 0.00 4.35
226 227 1.805943 CCACTGAATGCACATCGTCAA 59.194 47.619 0.00 0.00 0.00 3.18
227 228 2.226200 CCACTGAATGCACATCGTCAAA 59.774 45.455 0.00 0.00 0.00 2.69
228 229 3.304592 CCACTGAATGCACATCGTCAAAA 60.305 43.478 0.00 0.00 0.00 2.44
229 230 4.289342 CACTGAATGCACATCGTCAAAAA 58.711 39.130 0.00 0.00 0.00 1.94
230 231 4.380678 CACTGAATGCACATCGTCAAAAAG 59.619 41.667 0.00 0.00 0.00 2.27
231 232 3.899734 TGAATGCACATCGTCAAAAAGG 58.100 40.909 0.00 0.00 0.00 3.11
232 233 2.352503 ATGCACATCGTCAAAAAGGC 57.647 45.000 0.00 0.00 0.00 4.35
233 234 1.028130 TGCACATCGTCAAAAAGGCA 58.972 45.000 0.00 0.00 0.00 4.75
234 235 1.612950 TGCACATCGTCAAAAAGGCAT 59.387 42.857 0.00 0.00 0.00 4.40
235 236 1.987770 GCACATCGTCAAAAAGGCATG 59.012 47.619 0.00 0.00 0.00 4.06
236 237 2.351641 GCACATCGTCAAAAAGGCATGA 60.352 45.455 0.00 0.00 0.00 3.07
237 238 3.856638 GCACATCGTCAAAAAGGCATGAA 60.857 43.478 0.00 0.00 0.00 2.57
238 239 4.297510 CACATCGTCAAAAAGGCATGAAA 58.702 39.130 0.00 0.00 0.00 2.69
239 240 4.925054 CACATCGTCAAAAAGGCATGAAAT 59.075 37.500 0.00 0.00 0.00 2.17
240 241 6.092092 CACATCGTCAAAAAGGCATGAAATA 58.908 36.000 0.00 0.00 0.00 1.40
241 242 6.585702 CACATCGTCAAAAAGGCATGAAATAA 59.414 34.615 0.00 0.00 0.00 1.40
242 243 7.116090 CACATCGTCAAAAAGGCATGAAATAAA 59.884 33.333 0.00 0.00 0.00 1.40
243 244 7.818930 ACATCGTCAAAAAGGCATGAAATAAAT 59.181 29.630 0.00 0.00 0.00 1.40
244 245 9.299963 CATCGTCAAAAAGGCATGAAATAAATA 57.700 29.630 0.00 0.00 0.00 1.40
245 246 8.682128 TCGTCAAAAAGGCATGAAATAAATAC 57.318 30.769 0.00 0.00 0.00 1.89
246 247 8.300286 TCGTCAAAAAGGCATGAAATAAATACA 58.700 29.630 0.00 0.00 0.00 2.29
247 248 8.586273 CGTCAAAAAGGCATGAAATAAATACAG 58.414 33.333 0.00 0.00 0.00 2.74
248 249 9.638239 GTCAAAAAGGCATGAAATAAATACAGA 57.362 29.630 0.00 0.00 0.00 3.41
255 256 9.101655 AGGCATGAAATAAATACAGAAAAATGC 57.898 29.630 0.00 0.00 35.85 3.56
256 257 8.881743 GGCATGAAATAAATACAGAAAAATGCA 58.118 29.630 0.00 0.00 37.77 3.96
266 267 7.745022 ATACAGAAAAATGCAATCATCAACG 57.255 32.000 0.00 0.00 31.27 4.10
267 268 4.386652 ACAGAAAAATGCAATCATCAACGC 59.613 37.500 0.00 0.00 31.27 4.84
268 269 3.609373 AGAAAAATGCAATCATCAACGCG 59.391 39.130 3.53 3.53 31.27 6.01
269 270 2.917701 AAATGCAATCATCAACGCGA 57.082 40.000 15.93 0.00 31.27 5.87
270 271 2.917701 AATGCAATCATCAACGCGAA 57.082 40.000 15.93 0.00 31.27 4.70
271 272 2.463553 ATGCAATCATCAACGCGAAG 57.536 45.000 15.93 4.32 0.00 3.79
272 273 1.155889 TGCAATCATCAACGCGAAGT 58.844 45.000 15.93 0.00 0.00 3.01
273 274 1.128507 TGCAATCATCAACGCGAAGTC 59.871 47.619 15.93 0.00 0.00 3.01
274 275 1.394917 GCAATCATCAACGCGAAGTCT 59.605 47.619 15.93 0.00 0.00 3.24
275 276 2.603110 GCAATCATCAACGCGAAGTCTA 59.397 45.455 15.93 0.00 0.00 2.59
276 277 3.302092 GCAATCATCAACGCGAAGTCTAG 60.302 47.826 15.93 0.00 0.00 2.43
277 278 2.561733 TCATCAACGCGAAGTCTAGG 57.438 50.000 15.93 0.00 0.00 3.02
278 279 2.089201 TCATCAACGCGAAGTCTAGGA 58.911 47.619 15.93 0.00 0.00 2.94
279 280 2.159421 TCATCAACGCGAAGTCTAGGAC 60.159 50.000 15.93 0.00 0.00 3.85
280 281 1.531423 TCAACGCGAAGTCTAGGACT 58.469 50.000 15.93 0.00 45.64 3.85
294 295 7.133133 AGTCTAGGACTTAAACTTGGTTTCA 57.867 36.000 0.00 0.00 40.28 2.69
295 296 6.990939 AGTCTAGGACTTAAACTTGGTTTCAC 59.009 38.462 0.00 0.00 40.28 3.18
296 297 6.990939 GTCTAGGACTTAAACTTGGTTTCACT 59.009 38.462 0.00 0.00 37.01 3.41
297 298 8.146412 GTCTAGGACTTAAACTTGGTTTCACTA 58.854 37.037 0.00 0.00 37.01 2.74
298 299 8.146412 TCTAGGACTTAAACTTGGTTTCACTAC 58.854 37.037 0.00 0.00 37.01 2.73
299 300 6.655930 AGGACTTAAACTTGGTTTCACTACA 58.344 36.000 0.00 0.00 37.01 2.74
300 301 7.114095 AGGACTTAAACTTGGTTTCACTACAA 58.886 34.615 0.00 0.00 37.01 2.41
301 302 7.282450 AGGACTTAAACTTGGTTTCACTACAAG 59.718 37.037 0.00 0.00 45.27 3.16
302 303 7.281549 GGACTTAAACTTGGTTTCACTACAAGA 59.718 37.037 10.25 0.00 43.13 3.02
303 304 8.570068 ACTTAAACTTGGTTTCACTACAAGAA 57.430 30.769 10.25 0.00 43.13 2.52
304 305 9.016438 ACTTAAACTTGGTTTCACTACAAGAAA 57.984 29.630 10.25 0.00 43.13 2.52
312 313 6.930667 GTTTCACTACAAGAAACCTAACCA 57.069 37.500 7.39 0.00 45.58 3.67
313 314 7.506328 GTTTCACTACAAGAAACCTAACCAT 57.494 36.000 7.39 0.00 45.58 3.55
314 315 7.582352 GTTTCACTACAAGAAACCTAACCATC 58.418 38.462 7.39 0.00 45.58 3.51
315 316 6.681729 TCACTACAAGAAACCTAACCATCT 57.318 37.500 0.00 0.00 0.00 2.90
316 317 7.786046 TCACTACAAGAAACCTAACCATCTA 57.214 36.000 0.00 0.00 0.00 1.98
317 318 8.197592 TCACTACAAGAAACCTAACCATCTAA 57.802 34.615 0.00 0.00 0.00 2.10
318 319 8.311836 TCACTACAAGAAACCTAACCATCTAAG 58.688 37.037 0.00 0.00 0.00 2.18
319 320 7.064728 CACTACAAGAAACCTAACCATCTAAGC 59.935 40.741 0.00 0.00 0.00 3.09
320 321 6.128138 ACAAGAAACCTAACCATCTAAGCT 57.872 37.500 0.00 0.00 0.00 3.74
321 322 6.174049 ACAAGAAACCTAACCATCTAAGCTC 58.826 40.000 0.00 0.00 0.00 4.09
322 323 6.013293 ACAAGAAACCTAACCATCTAAGCTCT 60.013 38.462 0.00 0.00 0.00 4.09
323 324 6.228616 AGAAACCTAACCATCTAAGCTCTC 57.771 41.667 0.00 0.00 0.00 3.20
324 325 5.129650 AGAAACCTAACCATCTAAGCTCTCC 59.870 44.000 0.00 0.00 0.00 3.71
325 326 2.959707 ACCTAACCATCTAAGCTCTCCG 59.040 50.000 0.00 0.00 0.00 4.63
326 327 2.959707 CCTAACCATCTAAGCTCTCCGT 59.040 50.000 0.00 0.00 0.00 4.69
327 328 3.385111 CCTAACCATCTAAGCTCTCCGTT 59.615 47.826 0.00 0.00 0.00 4.44
328 329 3.528597 AACCATCTAAGCTCTCCGTTC 57.471 47.619 0.00 0.00 0.00 3.95
329 330 1.405821 ACCATCTAAGCTCTCCGTTCG 59.594 52.381 0.00 0.00 0.00 3.95
330 331 1.482278 CATCTAAGCTCTCCGTTCGC 58.518 55.000 0.00 0.00 0.00 4.70
331 332 0.029567 ATCTAAGCTCTCCGTTCGCG 59.970 55.000 0.00 0.00 40.93 5.87
344 345 2.624766 CGTTCGCGGCATTATACTTTG 58.375 47.619 6.13 0.00 36.88 2.77
345 346 2.598907 CGTTCGCGGCATTATACTTTGG 60.599 50.000 6.13 0.00 36.88 3.28
346 347 2.319136 TCGCGGCATTATACTTTGGT 57.681 45.000 6.13 0.00 0.00 3.67
347 348 1.937223 TCGCGGCATTATACTTTGGTG 59.063 47.619 6.13 0.00 0.00 4.17
348 349 1.937223 CGCGGCATTATACTTTGGTGA 59.063 47.619 0.00 0.00 0.00 4.02
349 350 2.548057 CGCGGCATTATACTTTGGTGAT 59.452 45.455 0.00 0.00 0.00 3.06
350 351 3.606846 CGCGGCATTATACTTTGGTGATG 60.607 47.826 0.00 0.00 0.00 3.07
351 352 3.853307 GCGGCATTATACTTTGGTGATGC 60.853 47.826 0.00 0.00 37.11 3.91
352 353 3.304659 CGGCATTATACTTTGGTGATGCC 60.305 47.826 13.61 13.61 44.57 4.40
353 354 3.005791 GGCATTATACTTTGGTGATGCCC 59.994 47.826 12.82 0.00 43.59 5.36
354 355 3.891366 GCATTATACTTTGGTGATGCCCT 59.109 43.478 0.00 0.00 34.56 5.19
355 356 5.070001 GCATTATACTTTGGTGATGCCCTA 58.930 41.667 0.00 0.00 34.56 3.53
356 357 5.534654 GCATTATACTTTGGTGATGCCCTAA 59.465 40.000 0.00 0.00 34.56 2.69
357 358 6.040391 GCATTATACTTTGGTGATGCCCTAAA 59.960 38.462 0.00 0.00 34.56 1.85
358 359 7.417342 GCATTATACTTTGGTGATGCCCTAAAA 60.417 37.037 0.00 0.00 34.56 1.52
359 360 7.639113 TTATACTTTGGTGATGCCCTAAAAG 57.361 36.000 0.00 0.00 35.24 2.27
360 361 3.165071 ACTTTGGTGATGCCCTAAAAGG 58.835 45.455 0.00 0.00 34.11 3.11
361 362 3.181423 ACTTTGGTGATGCCCTAAAAGGA 60.181 43.478 0.00 0.00 37.67 3.36
362 363 3.534357 TTGGTGATGCCCTAAAAGGAA 57.466 42.857 0.00 0.00 37.67 3.36
363 364 2.802719 TGGTGATGCCCTAAAAGGAAC 58.197 47.619 0.00 0.00 37.67 3.62
364 365 2.100197 GGTGATGCCCTAAAAGGAACC 58.900 52.381 0.00 0.00 37.67 3.62
365 366 2.100197 GTGATGCCCTAAAAGGAACCC 58.900 52.381 0.00 0.00 37.67 4.11
366 367 2.000048 TGATGCCCTAAAAGGAACCCT 59.000 47.619 0.00 0.00 37.67 4.34
367 368 2.025321 TGATGCCCTAAAAGGAACCCTC 60.025 50.000 0.00 0.00 37.67 4.30
368 369 0.326927 TGCCCTAAAAGGAACCCTCG 59.673 55.000 0.00 0.00 37.67 4.63
369 370 0.327259 GCCCTAAAAGGAACCCTCGT 59.673 55.000 0.00 0.00 37.67 4.18
370 371 1.271762 GCCCTAAAAGGAACCCTCGTT 60.272 52.381 0.00 0.00 37.67 3.85
371 372 2.708051 CCCTAAAAGGAACCCTCGTTC 58.292 52.381 0.00 0.00 46.52 3.95
379 380 1.739067 GAACCCTCGTTCATCCAAGG 58.261 55.000 0.00 0.00 46.49 3.61
380 381 1.278127 GAACCCTCGTTCATCCAAGGA 59.722 52.381 0.00 0.00 46.49 3.36
381 382 1.584724 ACCCTCGTTCATCCAAGGAT 58.415 50.000 0.00 0.00 34.81 3.24
392 393 1.462616 TCCAAGGATGAAATGGCACG 58.537 50.000 0.00 0.00 34.13 5.34
393 394 0.179129 CCAAGGATGAAATGGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
394 395 0.527113 CAAGGATGAAATGGCACGCA 59.473 50.000 0.00 0.00 0.00 5.24
395 396 1.135527 CAAGGATGAAATGGCACGCAT 59.864 47.619 0.00 0.00 0.00 4.73
396 397 1.027357 AGGATGAAATGGCACGCATC 58.973 50.000 14.27 14.27 37.11 3.91
397 398 0.740149 GGATGAAATGGCACGCATCA 59.260 50.000 20.54 10.65 39.02 3.07
398 399 1.338973 GGATGAAATGGCACGCATCAT 59.661 47.619 20.54 14.01 39.02 2.45
399 400 2.223876 GGATGAAATGGCACGCATCATT 60.224 45.455 20.54 0.00 39.02 2.57
405 406 4.652421 AATGGCACGCATCATTTTATCA 57.348 36.364 0.00 0.00 30.27 2.15
406 407 4.859304 ATGGCACGCATCATTTTATCAT 57.141 36.364 0.00 0.00 0.00 2.45
408 409 5.008619 TGGCACGCATCATTTTATCATTT 57.991 34.783 0.00 0.00 0.00 2.32
409 410 5.042593 TGGCACGCATCATTTTATCATTTC 58.957 37.500 0.00 0.00 0.00 2.17
410 411 5.163530 TGGCACGCATCATTTTATCATTTCT 60.164 36.000 0.00 0.00 0.00 2.52
415 416 9.467990 CACGCATCATTTTATCATTTCTTTTTG 57.532 29.630 0.00 0.00 0.00 2.44
486 487 0.105760 TTTGTGCCTTGGTCCCACAT 60.106 50.000 0.20 0.00 39.03 3.21
553 558 1.146263 GATCGACCCACCCATCCAC 59.854 63.158 0.00 0.00 0.00 4.02
554 559 2.325393 GATCGACCCACCCATCCACC 62.325 65.000 0.00 0.00 0.00 4.61
555 560 4.109675 CGACCCACCCATCCACCC 62.110 72.222 0.00 0.00 0.00 4.61
556 561 3.739613 GACCCACCCATCCACCCC 61.740 72.222 0.00 0.00 0.00 4.95
557 562 4.626745 ACCCACCCATCCACCCCA 62.627 66.667 0.00 0.00 0.00 4.96
558 563 3.743017 CCCACCCATCCACCCCAG 61.743 72.222 0.00 0.00 0.00 4.45
677 687 0.244178 GAGTGTGACGGAACTCCTCC 59.756 60.000 0.00 0.00 41.40 4.30
683 693 4.493747 CGGAACTCCTCCCGTCGC 62.494 72.222 0.00 0.00 41.87 5.19
684 694 4.144703 GGAACTCCTCCCGTCGCC 62.145 72.222 0.00 0.00 38.44 5.54
685 695 3.379445 GAACTCCTCCCGTCGCCA 61.379 66.667 0.00 0.00 0.00 5.69
792 802 2.107141 CGAATCTGAGCCCCCGTC 59.893 66.667 0.00 0.00 0.00 4.79
897 922 3.017314 CGTCTGACGCGCCGTATC 61.017 66.667 17.94 0.00 41.37 2.24
900 925 2.173020 TCTGACGCGCCGTATCGTA 61.173 57.895 5.73 0.00 41.37 3.43
901 926 1.082300 CTGACGCGCCGTATCGTAT 60.082 57.895 5.73 0.00 41.37 3.06
902 927 1.058590 CTGACGCGCCGTATCGTATC 61.059 60.000 5.73 0.00 41.37 2.24
903 928 1.082561 GACGCGCCGTATCGTATCA 60.083 57.895 5.73 0.00 41.37 2.15
904 929 0.453950 GACGCGCCGTATCGTATCAT 60.454 55.000 5.73 0.00 41.37 2.45
905 930 0.798159 ACGCGCCGTATCGTATCATA 59.202 50.000 5.73 0.00 38.73 2.15
908 933 2.538132 CGCGCCGTATCGTATCATATCA 60.538 50.000 0.00 0.00 0.00 2.15
948 973 1.334556 CAGTGCTGCTTGTGTTGCTAA 59.665 47.619 0.00 0.00 0.00 3.09
954 979 0.387750 GCTTGTGTTGCTAAGCAGGC 60.388 55.000 0.00 0.00 46.43 4.85
967 992 3.898509 CAGGCTCGCCTCTCTCGG 61.899 72.222 7.64 0.00 46.28 4.63
1023 1048 3.791640 TGGTGCACCATCGAGTCT 58.208 55.556 34.74 0.00 42.01 3.24
1038 1063 1.591863 GTCTGATCCCGGTAAGCGC 60.592 63.158 0.00 0.00 0.00 5.92
1039 1064 2.055633 TCTGATCCCGGTAAGCGCA 61.056 57.895 11.47 0.00 0.00 6.09
1041 1066 1.429148 CTGATCCCGGTAAGCGCAAC 61.429 60.000 11.47 7.35 0.00 4.17
1049 1074 1.623973 GGTAAGCGCAACGTCTCACC 61.624 60.000 11.47 0.39 0.00 4.02
1050 1075 0.942410 GTAAGCGCAACGTCTCACCA 60.942 55.000 11.47 0.00 0.00 4.17
1051 1076 0.666274 TAAGCGCAACGTCTCACCAG 60.666 55.000 11.47 0.00 0.00 4.00
1052 1077 2.355837 GCGCAACGTCTCACCAGA 60.356 61.111 0.30 0.00 0.00 3.86
1053 1078 1.954146 GCGCAACGTCTCACCAGAA 60.954 57.895 0.30 0.00 0.00 3.02
1054 1079 1.495584 GCGCAACGTCTCACCAGAAA 61.496 55.000 0.30 0.00 0.00 2.52
1055 1080 0.934496 CGCAACGTCTCACCAGAAAA 59.066 50.000 0.00 0.00 0.00 2.29
1065 1090 4.079253 TCTCACCAGAAAATTTACCCTGC 58.921 43.478 0.00 0.00 0.00 4.85
1143 1168 1.283347 ATCCCATCAGTGCAGAGTGT 58.717 50.000 0.00 0.00 0.00 3.55
1151 1176 2.419673 TCAGTGCAGAGTGTTGTGTTTG 59.580 45.455 0.00 0.00 0.00 2.93
1159 1184 4.324402 CAGAGTGTTGTGTTTGCTTGTTTC 59.676 41.667 0.00 0.00 0.00 2.78
1175 1200 1.037030 TTTCGATTGGATGGCCTGCC 61.037 55.000 3.32 5.82 34.31 4.85
1217 1242 4.326766 TGCAGGCAACGCGCTTTC 62.327 61.111 5.73 0.00 46.39 2.62
1226 1251 0.796312 AACGCGCTTTCAGTGTATGG 59.204 50.000 5.73 0.00 0.00 2.74
1229 1254 1.156736 GCGCTTTCAGTGTATGGTGT 58.843 50.000 0.00 0.00 0.00 4.16
1230 1255 1.135972 GCGCTTTCAGTGTATGGTGTG 60.136 52.381 0.00 0.00 0.00 3.82
1240 1265 2.738846 GTGTATGGTGTGCTTGTGAGAG 59.261 50.000 0.00 0.00 0.00 3.20
1252 1277 3.832276 CTTGTGAGAGTCAGAGTAGTGC 58.168 50.000 0.00 0.00 0.00 4.40
1258 1283 3.013921 AGAGTCAGAGTAGTGCACTAGC 58.986 50.000 26.70 20.29 37.72 3.42
1274 1299 2.612212 ACTAGCAAGTTTGTGTGTTCGG 59.388 45.455 0.00 0.00 29.00 4.30
1282 1307 0.534877 TTGTGTGTTCGGCAGCTGAT 60.535 50.000 20.43 0.00 0.00 2.90
1306 1337 1.443194 CTGTGTGGCTTCGCATTGC 60.443 57.895 0.00 0.00 33.11 3.56
1416 1464 4.439253 AACTAGTTGTGAAGAAAGCCCT 57.561 40.909 7.48 0.00 0.00 5.19
1426 1474 2.557920 AGAAAGCCCTGAGTCAGTTG 57.442 50.000 18.74 10.50 0.00 3.16
1468 1516 6.460399 GCAAATTGTATTTCTTGCGGGGTATA 60.460 38.462 0.00 0.00 35.30 1.47
1535 1673 5.026790 AGGGAGCTCTGTATCTTGTTAGTT 58.973 41.667 14.64 0.00 0.00 2.24
1574 1712 5.545063 TGTTCAGACTAACAGTTGGATGA 57.455 39.130 3.22 4.67 34.50 2.92
1581 1719 7.604164 TCAGACTAACAGTTGGATGAATTCTTC 59.396 37.037 11.89 11.89 0.00 2.87
1582 1720 7.388776 CAGACTAACAGTTGGATGAATTCTTCA 59.611 37.037 19.62 7.53 45.01 3.02
1620 1758 5.684626 GCAATCTTCTTGTCACTGTTTTGAG 59.315 40.000 0.00 0.00 0.00 3.02
1630 1768 3.125146 TCACTGTTTTGAGCATCGCATAC 59.875 43.478 0.00 0.00 38.61 2.39
1637 1775 3.502191 TGAGCATCGCATACGCATATA 57.498 42.857 0.00 0.00 38.61 0.86
1735 1873 2.368548 GCTTCCAGGGGTCATTGTTTTT 59.631 45.455 0.00 0.00 0.00 1.94
1740 1878 4.140900 TCCAGGGGTCATTGTTTTTCCTTA 60.141 41.667 0.00 0.00 0.00 2.69
1782 1921 8.391106 GCTATGAAACCTGTTATCAGTTAGTTG 58.609 37.037 0.30 0.00 39.82 3.16
1821 1960 5.120053 GCAATGGTGTAAAATACTTGGTTGC 59.880 40.000 0.00 0.00 32.49 4.17
1826 1965 7.952671 TGGTGTAAAATACTTGGTTGCAATTA 58.047 30.769 0.59 0.00 0.00 1.40
1835 1974 5.971763 ACTTGGTTGCAATTACTTGTTGAA 58.028 33.333 0.59 0.00 34.69 2.69
1864 2013 5.611374 CAAGAGTCTTCTTAGTGGGTTTGA 58.389 41.667 1.26 0.00 41.71 2.69
1937 2095 4.519213 ACTACCTCTACAGCTCTGTACTG 58.481 47.826 5.69 0.00 44.42 2.74
2002 2161 6.653020 TGGTGAACTCGTACTCCTATACTAA 58.347 40.000 0.00 0.00 0.00 2.24
2682 2841 2.046023 CGGGATGCTGCAGTTGGA 60.046 61.111 16.64 0.00 0.00 3.53
3130 3291 4.457496 ATGCTGCGGGTGGAGACG 62.457 66.667 0.00 0.00 35.14 4.18
3244 3405 1.705002 TTATGGGTAGCAGCCGCCAT 61.705 55.000 5.34 0.00 38.98 4.40
3245 3406 0.834261 TATGGGTAGCAGCCGCCATA 60.834 55.000 5.34 0.00 38.98 2.74
3246 3407 2.031163 GGGTAGCAGCCGCCATAG 59.969 66.667 5.34 0.00 39.83 2.23
3247 3408 2.507854 GGGTAGCAGCCGCCATAGA 61.508 63.158 5.34 0.00 39.83 1.98
3248 3409 1.674057 GGTAGCAGCCGCCATAGAT 59.326 57.895 0.00 0.00 39.83 1.98
3249 3410 0.895530 GGTAGCAGCCGCCATAGATA 59.104 55.000 0.00 0.00 39.83 1.98
3250 3411 1.404315 GGTAGCAGCCGCCATAGATAC 60.404 57.143 0.00 0.00 39.83 2.24
3251 3412 1.272490 GTAGCAGCCGCCATAGATACA 59.728 52.381 0.00 0.00 39.83 2.29
3252 3413 0.034059 AGCAGCCGCCATAGATACAC 59.966 55.000 0.00 0.00 39.83 2.90
3253 3414 0.034059 GCAGCCGCCATAGATACACT 59.966 55.000 0.00 0.00 0.00 3.55
3254 3415 1.541233 GCAGCCGCCATAGATACACTT 60.541 52.381 0.00 0.00 0.00 3.16
3255 3416 2.288825 GCAGCCGCCATAGATACACTTA 60.289 50.000 0.00 0.00 0.00 2.24
3256 3417 3.802329 GCAGCCGCCATAGATACACTTAA 60.802 47.826 0.00 0.00 0.00 1.85
3257 3418 3.990469 CAGCCGCCATAGATACACTTAAG 59.010 47.826 0.00 0.00 0.00 1.85
3258 3419 3.641906 AGCCGCCATAGATACACTTAAGT 59.358 43.478 1.12 1.12 0.00 2.24
3259 3420 4.101119 AGCCGCCATAGATACACTTAAGTT 59.899 41.667 5.07 0.62 0.00 2.66
3260 3421 4.814771 GCCGCCATAGATACACTTAAGTTT 59.185 41.667 5.07 1.84 0.00 2.66
3368 3529 6.791887 ATGTGAAGACATAATAATCCTGCG 57.208 37.500 0.00 0.00 41.27 5.18
3525 3706 9.952188 GGCTATGGTTCTATTTTTAGTTTGATC 57.048 33.333 0.00 0.00 0.00 2.92
3534 3715 9.791820 TCTATTTTTAGTTTGATCATGCATGTG 57.208 29.630 25.43 3.46 0.00 3.21
3554 3759 7.472663 GCATGTGGCATTAGGGGATTTTATAAA 60.473 37.037 0.00 0.00 43.97 1.40
3612 3817 9.178758 AGTTATATTTGAAAAAGGCTCCTACAG 57.821 33.333 0.00 0.00 0.00 2.74
3645 3934 1.578897 TGGGATGTAGCTGTTAGCCA 58.421 50.000 0.00 0.00 43.77 4.75
3697 3986 2.835156 GGTGGAGGAGCTTTACTCTCTT 59.165 50.000 12.01 0.00 45.48 2.85
3737 4026 4.390297 GTCAACTACAGTGAGGATCTTTGC 59.610 45.833 0.00 0.00 34.92 3.68
3754 4043 8.462016 GGATCTTTGCTGTTAGTGTCATTAATT 58.538 33.333 0.00 0.00 0.00 1.40
3775 4064 7.684937 AATTTCTTCTCTCTGAATGTCCTTG 57.315 36.000 0.00 0.00 33.71 3.61
3925 4214 4.500035 GCCAGGTTAATTTCGTTTTGTCCA 60.500 41.667 0.00 0.00 0.00 4.02
3927 4216 6.570764 GCCAGGTTAATTTCGTTTTGTCCATA 60.571 38.462 0.00 0.00 0.00 2.74
4081 4370 4.323792 CCAGAGCTATCAAACCTGAAGGAA 60.324 45.833 2.62 0.00 38.94 3.36
4096 4385 4.473444 TGAAGGAATTCACAGGAGCTTTT 58.527 39.130 7.93 0.00 0.00 2.27
4132 4421 1.614317 GGCCTGGCTATCAACAACAGT 60.614 52.381 19.68 0.00 0.00 3.55
4144 4433 0.320771 ACAACAGTGACTCCATCCGC 60.321 55.000 0.00 0.00 0.00 5.54
4195 4484 1.471501 CCATTCGTCTCCGATGAGCAA 60.472 52.381 0.00 0.00 43.80 3.91
4249 4538 7.346471 ACCACTTCATAAGCTACATACCATTT 58.654 34.615 0.00 0.00 0.00 2.32
4420 4709 2.353357 TCAACCTCATGGCCATCATC 57.647 50.000 17.61 0.00 36.63 2.92
4450 4739 1.007038 GGACGTGTACACTGCCGAA 60.007 57.895 23.01 0.00 0.00 4.30
4451 4740 0.389426 GGACGTGTACACTGCCGAAT 60.389 55.000 23.01 1.72 0.00 3.34
4538 4827 1.149101 AGAAAAGGAGCCCCTGAACA 58.851 50.000 0.00 0.00 43.48 3.18
4607 4896 1.388065 CGCGATGGAGGAGGAGAAGT 61.388 60.000 0.00 0.00 0.00 3.01
4840 5138 7.034685 TCTTTTGAGGATGCATCATGTTATG 57.965 36.000 27.25 12.37 0.00 1.90
4851 5149 4.510711 GCATCATGTTATGAGACACTCCTG 59.489 45.833 0.00 0.00 43.53 3.86
4876 5174 0.249398 AGTACCTAGTTGGCGGCTTG 59.751 55.000 11.43 0.00 40.22 4.01
4877 5175 1.078708 TACCTAGTTGGCGGCTTGC 60.079 57.895 11.43 0.00 45.38 4.01
4912 5210 5.394553 GCTGCTGAGGCTATAAACCATTTTT 60.395 40.000 0.00 0.00 39.59 1.94
4988 5291 4.219919 AGAGCTGTAGAAGGGGTCTATTC 58.780 47.826 0.00 0.00 41.00 1.75
5013 5316 6.775594 ATCTTAAATTAAAGGAGGGTGTGC 57.224 37.500 0.00 0.00 0.00 4.57
5023 5326 1.481363 GGAGGGTGTGCTAGGTACTTC 59.519 57.143 0.00 0.00 41.75 3.01
5059 5372 1.340893 TGGTGTTGCCTGGTATGGATG 60.341 52.381 0.00 0.00 38.35 3.51
5079 5392 6.151817 TGGATGACAGAGTATGATATTCTCCG 59.848 42.308 0.00 0.00 0.00 4.63
5080 5393 5.966742 TGACAGAGTATGATATTCTCCGG 57.033 43.478 0.00 0.00 0.00 5.14
5089 5403 2.170397 TGATATTCTCCGGCTCTTGCAA 59.830 45.455 0.00 0.00 41.91 4.08
5183 5498 0.235926 GAGCAGCAACGTTCAGTTCC 59.764 55.000 0.00 0.00 42.02 3.62
5188 5503 2.285756 CAGCAACGTTCAGTTCCGTAAA 59.714 45.455 0.00 0.00 42.02 2.01
5189 5504 2.286025 AGCAACGTTCAGTTCCGTAAAC 59.714 45.455 0.00 0.00 42.02 2.01
5225 5540 5.342806 TGAGCGAGTAATCTGTTTTTGTG 57.657 39.130 0.00 0.00 0.00 3.33
5233 5548 2.645730 TCTGTTTTTGTGTGGTGTGC 57.354 45.000 0.00 0.00 0.00 4.57
5250 5565 3.689161 GTGTGCTATTGACCTGTTGCATA 59.311 43.478 0.00 0.00 32.98 3.14
5294 5859 5.174395 CAGGTTCTCTTGTGAGTTCATAGG 58.826 45.833 0.00 0.00 40.98 2.57
5300 5865 7.815840 TCTCTTGTGAGTTCATAGGATAGAG 57.184 40.000 0.00 0.00 40.98 2.43
5301 5866 6.264292 TCTCTTGTGAGTTCATAGGATAGAGC 59.736 42.308 0.00 0.00 40.98 4.09
5302 5867 5.893824 TCTTGTGAGTTCATAGGATAGAGCA 59.106 40.000 0.00 0.00 0.00 4.26
5303 5868 6.381133 TCTTGTGAGTTCATAGGATAGAGCAA 59.619 38.462 0.00 0.00 0.00 3.91
5304 5869 6.154203 TGTGAGTTCATAGGATAGAGCAAG 57.846 41.667 0.00 0.00 0.00 4.01
5305 5870 5.893824 TGTGAGTTCATAGGATAGAGCAAGA 59.106 40.000 0.00 0.00 0.00 3.02
5306 5871 6.040278 TGTGAGTTCATAGGATAGAGCAAGAG 59.960 42.308 0.00 0.00 0.00 2.85
5307 5872 5.010516 TGAGTTCATAGGATAGAGCAAGAGC 59.989 44.000 0.00 0.00 42.56 4.09
5308 5873 4.898265 AGTTCATAGGATAGAGCAAGAGCA 59.102 41.667 0.00 0.00 45.49 4.26
5309 5874 5.365025 AGTTCATAGGATAGAGCAAGAGCAA 59.635 40.000 0.00 0.00 45.49 3.91
5310 5875 6.043012 AGTTCATAGGATAGAGCAAGAGCAAT 59.957 38.462 0.00 0.00 45.49 3.56
5337 5913 4.083590 GGATGCTCAAGTTTCTCAGTTCAC 60.084 45.833 0.00 0.00 0.00 3.18
5345 5921 8.964476 TCAAGTTTCTCAGTTCACTCTTATTT 57.036 30.769 0.00 0.00 0.00 1.40
5462 6055 9.685005 CTAAAAATATATTATTACGAGCACCGC 57.315 33.333 0.00 0.00 43.32 5.68
5463 6056 7.900782 AAAATATATTATTACGAGCACCGCT 57.099 32.000 0.00 0.00 43.88 5.52
5472 6065 0.936764 CGAGCACCGCTAGCAGTATG 60.937 60.000 16.45 7.77 39.88 2.39
5649 6244 2.927871 GCACAACAGAATGGAACCATGC 60.928 50.000 7.12 5.38 43.62 4.06
5650 6245 2.296752 CACAACAGAATGGAACCATGCA 59.703 45.455 13.56 0.00 43.62 3.96
5651 6246 3.056393 CACAACAGAATGGAACCATGCAT 60.056 43.478 13.56 0.00 43.62 3.96
5652 6247 3.194116 ACAACAGAATGGAACCATGCATC 59.806 43.478 13.56 5.45 43.62 3.91
5653 6248 3.377253 ACAGAATGGAACCATGCATCT 57.623 42.857 13.56 7.47 43.62 2.90
5654 6249 3.705051 ACAGAATGGAACCATGCATCTT 58.295 40.909 13.56 0.00 43.62 2.40
5655 6250 4.091549 ACAGAATGGAACCATGCATCTTT 58.908 39.130 13.56 0.00 43.62 2.52
5656 6251 4.081862 ACAGAATGGAACCATGCATCTTTG 60.082 41.667 13.56 5.72 43.62 2.77
5657 6252 7.581410 ACAGAATGGAACCATGCATCTTTGC 62.581 44.000 13.56 0.00 45.76 3.68
5786 6381 9.950496 ACATAAATATAAATTTTTGGTGCACCA 57.050 25.926 34.74 34.74 37.96 4.17
5856 6451 4.740268 GGTTGTCCGAACCAATAATTTCC 58.260 43.478 0.00 0.00 40.03 3.13
5870 6465 6.098124 CCAATAATTTCCTTGTGAGGCCATTA 59.902 38.462 5.01 0.00 43.21 1.90
5883 6478 1.067060 GGCCATTAATGAGAAACCGGC 59.933 52.381 17.23 8.66 37.57 6.13
5884 6479 1.268539 GCCATTAATGAGAAACCGGCG 60.269 52.381 17.23 0.00 0.00 6.46
5888 6483 0.108041 TAATGAGAAACCGGCGGTCC 60.108 55.000 34.23 25.74 33.12 4.46
5903 6498 2.227149 GCGGTCCGGAACAAAATAAAGT 59.773 45.455 21.79 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.701651 TCCAGTCATATGAGCACCTTTTTG 59.298 41.667 5.42 0.00 0.00 2.44
6 7 4.702131 GTCCAGTCATATGAGCACCTTTTT 59.298 41.667 5.42 0.00 0.00 1.94
7 8 4.263462 TGTCCAGTCATATGAGCACCTTTT 60.263 41.667 5.42 0.00 0.00 2.27
8 9 3.264193 TGTCCAGTCATATGAGCACCTTT 59.736 43.478 5.42 0.00 0.00 3.11
9 10 2.840038 TGTCCAGTCATATGAGCACCTT 59.160 45.455 5.42 0.00 0.00 3.50
11 12 2.988010 TGTCCAGTCATATGAGCACC 57.012 50.000 5.42 0.00 0.00 5.01
12 13 6.691508 TGTATATGTCCAGTCATATGAGCAC 58.308 40.000 5.42 1.32 40.07 4.40
13 14 6.916360 TGTATATGTCCAGTCATATGAGCA 57.084 37.500 5.42 1.40 40.07 4.26
15 16 9.148104 CACAATGTATATGTCCAGTCATATGAG 57.852 37.037 5.42 0.00 40.07 2.90
16 17 8.096414 CCACAATGTATATGTCCAGTCATATGA 58.904 37.037 0.00 0.00 40.07 2.15
18 19 8.206126 TCCACAATGTATATGTCCAGTCATAT 57.794 34.615 0.00 0.00 41.81 1.78
19 20 7.256296 CCTCCACAATGTATATGTCCAGTCATA 60.256 40.741 0.00 0.00 35.24 2.15
20 21 6.464892 CCTCCACAATGTATATGTCCAGTCAT 60.465 42.308 0.00 0.00 0.00 3.06
21 22 5.163311 CCTCCACAATGTATATGTCCAGTCA 60.163 44.000 0.00 0.00 0.00 3.41
22 23 5.163301 ACCTCCACAATGTATATGTCCAGTC 60.163 44.000 0.00 0.00 0.00 3.51
23 24 4.721776 ACCTCCACAATGTATATGTCCAGT 59.278 41.667 0.00 0.00 0.00 4.00
24 25 5.296151 ACCTCCACAATGTATATGTCCAG 57.704 43.478 0.00 0.00 0.00 3.86
25 26 5.708736 AACCTCCACAATGTATATGTCCA 57.291 39.130 0.00 0.00 0.00 4.02
26 27 6.485648 GGTTAACCTCCACAATGTATATGTCC 59.514 42.308 17.83 0.00 0.00 4.02
27 28 7.280356 AGGTTAACCTCCACAATGTATATGTC 58.720 38.462 21.96 0.00 44.77 3.06
28 29 7.208064 AGGTTAACCTCCACAATGTATATGT 57.792 36.000 21.96 0.00 44.77 2.29
40 41 7.366191 AAGACTTGTTCTTAAGGTTAACCTCCA 60.366 37.037 27.24 15.39 42.13 3.86
41 42 6.996879 AAGACTTGTTCTTAAGGTTAACCTCC 59.003 38.462 27.24 11.44 42.13 4.30
53 54 5.071250 TGACTGCCCTTAAGACTTGTTCTTA 59.929 40.000 3.36 0.00 43.27 2.10
54 55 4.141482 TGACTGCCCTTAAGACTTGTTCTT 60.141 41.667 3.36 0.00 46.91 2.52
55 56 3.391296 TGACTGCCCTTAAGACTTGTTCT 59.609 43.478 3.36 0.00 35.32 3.01
56 57 3.740115 TGACTGCCCTTAAGACTTGTTC 58.260 45.455 3.36 0.00 0.00 3.18
57 58 3.857157 TGACTGCCCTTAAGACTTGTT 57.143 42.857 3.36 0.00 0.00 2.83
58 59 3.617531 CGATGACTGCCCTTAAGACTTGT 60.618 47.826 3.36 0.00 0.00 3.16
59 60 2.932614 CGATGACTGCCCTTAAGACTTG 59.067 50.000 3.36 0.00 0.00 3.16
60 61 2.093447 CCGATGACTGCCCTTAAGACTT 60.093 50.000 3.36 0.00 0.00 3.01
61 62 1.482593 CCGATGACTGCCCTTAAGACT 59.517 52.381 3.36 0.00 0.00 3.24
62 63 1.473434 CCCGATGACTGCCCTTAAGAC 60.473 57.143 3.36 0.00 0.00 3.01
63 64 0.830648 CCCGATGACTGCCCTTAAGA 59.169 55.000 3.36 0.00 0.00 2.10
64 65 0.179045 CCCCGATGACTGCCCTTAAG 60.179 60.000 0.00 0.00 0.00 1.85
65 66 1.912220 CCCCGATGACTGCCCTTAA 59.088 57.895 0.00 0.00 0.00 1.85
66 67 2.742116 GCCCCGATGACTGCCCTTA 61.742 63.158 0.00 0.00 0.00 2.69
67 68 4.115199 GCCCCGATGACTGCCCTT 62.115 66.667 0.00 0.00 0.00 3.95
69 70 2.742116 TAAGCCCCGATGACTGCCC 61.742 63.158 0.00 0.00 0.00 5.36
70 71 1.523938 GTAAGCCCCGATGACTGCC 60.524 63.158 0.00 0.00 0.00 4.85
71 72 0.107654 AAGTAAGCCCCGATGACTGC 60.108 55.000 0.00 0.00 0.00 4.40
72 73 2.403252 AAAGTAAGCCCCGATGACTG 57.597 50.000 0.00 0.00 0.00 3.51
73 74 4.262506 GCTATAAAGTAAGCCCCGATGACT 60.263 45.833 0.00 0.00 32.40 3.41
74 75 3.995048 GCTATAAAGTAAGCCCCGATGAC 59.005 47.826 0.00 0.00 32.40 3.06
75 76 3.644265 TGCTATAAAGTAAGCCCCGATGA 59.356 43.478 0.00 0.00 37.97 2.92
76 77 4.002906 TGCTATAAAGTAAGCCCCGATG 57.997 45.455 0.00 0.00 37.97 3.84
77 78 4.699925 TTGCTATAAAGTAAGCCCCGAT 57.300 40.909 0.00 0.00 37.97 4.18
78 79 4.490899 TTTGCTATAAAGTAAGCCCCGA 57.509 40.909 0.00 0.00 37.97 5.14
79 80 4.578928 ACATTTGCTATAAAGTAAGCCCCG 59.421 41.667 0.00 0.00 37.97 5.73
80 81 7.576861 TTACATTTGCTATAAAGTAAGCCCC 57.423 36.000 0.00 0.00 37.97 5.80
81 82 9.067986 AGATTACATTTGCTATAAAGTAAGCCC 57.932 33.333 0.00 0.00 37.97 5.19
87 88 9.067986 GCCCTAAGATTACATTTGCTATAAAGT 57.932 33.333 0.00 0.00 0.00 2.66
88 89 9.066892 TGCCCTAAGATTACATTTGCTATAAAG 57.933 33.333 0.00 0.00 0.00 1.85
89 90 8.988546 TGCCCTAAGATTACATTTGCTATAAA 57.011 30.769 0.00 0.00 0.00 1.40
90 91 9.013229 CATGCCCTAAGATTACATTTGCTATAA 57.987 33.333 0.00 0.00 0.00 0.98
91 92 8.163408 ACATGCCCTAAGATTACATTTGCTATA 58.837 33.333 0.00 0.00 0.00 1.31
92 93 7.006509 ACATGCCCTAAGATTACATTTGCTAT 58.993 34.615 0.00 0.00 0.00 2.97
93 94 6.364701 ACATGCCCTAAGATTACATTTGCTA 58.635 36.000 0.00 0.00 0.00 3.49
94 95 5.203528 ACATGCCCTAAGATTACATTTGCT 58.796 37.500 0.00 0.00 0.00 3.91
95 96 5.520376 ACATGCCCTAAGATTACATTTGC 57.480 39.130 0.00 0.00 0.00 3.68
96 97 7.099266 TGAACATGCCCTAAGATTACATTTG 57.901 36.000 0.00 0.00 0.00 2.32
97 98 7.716799 TTGAACATGCCCTAAGATTACATTT 57.283 32.000 0.00 0.00 0.00 2.32
98 99 7.685155 GCATTGAACATGCCCTAAGATTACATT 60.685 37.037 0.00 0.00 39.01 2.71
99 100 6.239120 GCATTGAACATGCCCTAAGATTACAT 60.239 38.462 0.00 0.00 39.01 2.29
100 101 5.067674 GCATTGAACATGCCCTAAGATTACA 59.932 40.000 0.00 0.00 39.01 2.41
101 102 5.523369 GCATTGAACATGCCCTAAGATTAC 58.477 41.667 0.00 0.00 39.01 1.89
102 103 4.275689 CGCATTGAACATGCCCTAAGATTA 59.724 41.667 0.00 0.00 41.71 1.75
103 104 3.067180 CGCATTGAACATGCCCTAAGATT 59.933 43.478 0.00 0.00 41.71 2.40
104 105 2.620115 CGCATTGAACATGCCCTAAGAT 59.380 45.455 0.00 0.00 41.71 2.40
105 106 2.016318 CGCATTGAACATGCCCTAAGA 58.984 47.619 0.00 0.00 41.71 2.10
106 107 1.066002 CCGCATTGAACATGCCCTAAG 59.934 52.381 0.00 0.00 41.71 2.18
107 108 1.102154 CCGCATTGAACATGCCCTAA 58.898 50.000 0.00 0.00 41.71 2.69
108 109 0.751277 CCCGCATTGAACATGCCCTA 60.751 55.000 0.00 0.00 41.71 3.53
109 110 2.053865 CCCGCATTGAACATGCCCT 61.054 57.895 0.00 0.00 41.71 5.19
110 111 2.495866 CCCGCATTGAACATGCCC 59.504 61.111 0.00 0.00 41.71 5.36
111 112 2.202783 GCCCGCATTGAACATGCC 60.203 61.111 0.00 0.00 41.71 4.40
112 113 1.226773 GAGCCCGCATTGAACATGC 60.227 57.895 0.00 0.00 41.35 4.06
113 114 0.813184 AAGAGCCCGCATTGAACATG 59.187 50.000 0.00 0.00 0.00 3.21
114 115 0.813184 CAAGAGCCCGCATTGAACAT 59.187 50.000 0.00 0.00 0.00 2.71
115 116 1.865788 GCAAGAGCCCGCATTGAACA 61.866 55.000 8.36 0.00 33.58 3.18
116 117 1.153958 GCAAGAGCCCGCATTGAAC 60.154 57.895 8.36 0.00 33.58 3.18
117 118 3.277133 GCAAGAGCCCGCATTGAA 58.723 55.556 8.36 0.00 33.58 2.69
127 128 3.374058 ACGTTTACATACATGGCAAGAGC 59.626 43.478 0.00 0.00 41.10 4.09
128 129 4.259810 CGACGTTTACATACATGGCAAGAG 60.260 45.833 0.00 0.00 0.00 2.85
129 130 3.615056 CGACGTTTACATACATGGCAAGA 59.385 43.478 0.00 0.00 0.00 3.02
130 131 3.615056 TCGACGTTTACATACATGGCAAG 59.385 43.478 0.00 0.00 0.00 4.01
131 132 3.586892 TCGACGTTTACATACATGGCAA 58.413 40.909 0.00 0.00 0.00 4.52
132 133 3.119424 TCTCGACGTTTACATACATGGCA 60.119 43.478 0.00 0.00 0.00 4.92
133 134 3.242248 GTCTCGACGTTTACATACATGGC 59.758 47.826 0.00 0.00 0.00 4.40
134 135 4.264614 GTGTCTCGACGTTTACATACATGG 59.735 45.833 0.00 0.00 0.00 3.66
135 136 4.028750 CGTGTCTCGACGTTTACATACATG 60.029 45.833 0.00 0.00 42.86 3.21
136 137 4.093514 CGTGTCTCGACGTTTACATACAT 58.906 43.478 0.00 0.00 42.86 2.29
137 138 3.481839 CGTGTCTCGACGTTTACATACA 58.518 45.455 0.00 0.00 42.86 2.29
147 148 0.455464 TATTGGCACGTGTCTCGACG 60.455 55.000 22.43 0.00 45.09 5.12
148 149 1.922570 ATATTGGCACGTGTCTCGAC 58.077 50.000 22.43 0.37 42.86 4.20
149 150 2.686405 ACTATATTGGCACGTGTCTCGA 59.314 45.455 22.43 7.80 42.86 4.04
150 151 3.079960 ACTATATTGGCACGTGTCTCG 57.920 47.619 22.43 5.64 46.00 4.04
151 152 4.034048 CCAAACTATATTGGCACGTGTCTC 59.966 45.833 22.43 9.97 43.11 3.36
152 153 3.938963 CCAAACTATATTGGCACGTGTCT 59.061 43.478 22.43 4.19 43.11 3.41
153 154 4.273005 CCAAACTATATTGGCACGTGTC 57.727 45.455 14.58 14.58 43.11 3.67
183 184 1.806542 CAAGACATTTCCACCGACTGG 59.193 52.381 0.00 0.00 42.29 4.00
184 185 2.480419 GACAAGACATTTCCACCGACTG 59.520 50.000 0.00 0.00 0.00 3.51
185 186 2.550208 GGACAAGACATTTCCACCGACT 60.550 50.000 0.00 0.00 0.00 4.18
186 187 1.804748 GGACAAGACATTTCCACCGAC 59.195 52.381 0.00 0.00 0.00 4.79
187 188 1.271163 GGGACAAGACATTTCCACCGA 60.271 52.381 0.00 0.00 0.00 4.69
188 189 1.165270 GGGACAAGACATTTCCACCG 58.835 55.000 0.00 0.00 0.00 4.94
189 190 1.886542 GTGGGACAAGACATTTCCACC 59.113 52.381 0.00 0.00 44.16 4.61
190 191 2.554032 CAGTGGGACAAGACATTTCCAC 59.446 50.000 0.00 0.00 44.16 4.02
191 192 2.441375 TCAGTGGGACAAGACATTTCCA 59.559 45.455 0.00 0.00 44.16 3.53
192 193 3.140325 TCAGTGGGACAAGACATTTCC 57.860 47.619 0.00 0.00 44.16 3.13
193 194 4.616835 GCATTCAGTGGGACAAGACATTTC 60.617 45.833 0.00 0.00 44.16 2.17
194 195 3.256631 GCATTCAGTGGGACAAGACATTT 59.743 43.478 0.00 0.00 44.16 2.32
195 196 2.821969 GCATTCAGTGGGACAAGACATT 59.178 45.455 0.00 0.00 44.16 2.71
196 197 2.224843 TGCATTCAGTGGGACAAGACAT 60.225 45.455 0.00 0.00 44.16 3.06
197 198 1.142667 TGCATTCAGTGGGACAAGACA 59.857 47.619 0.00 0.00 44.16 3.41
198 199 1.537202 GTGCATTCAGTGGGACAAGAC 59.463 52.381 0.00 0.00 44.16 3.01
199 200 1.142667 TGTGCATTCAGTGGGACAAGA 59.857 47.619 0.00 0.00 44.16 3.02
200 201 1.608055 TGTGCATTCAGTGGGACAAG 58.392 50.000 0.00 0.00 44.16 3.16
201 202 2.161855 GATGTGCATTCAGTGGGACAA 58.838 47.619 0.00 0.00 44.16 3.18
202 203 1.825090 GATGTGCATTCAGTGGGACA 58.175 50.000 0.00 0.00 39.68 4.02
203 204 0.729116 CGATGTGCATTCAGTGGGAC 59.271 55.000 0.00 0.00 0.00 4.46
204 205 0.324614 ACGATGTGCATTCAGTGGGA 59.675 50.000 0.00 0.00 0.00 4.37
205 206 0.729116 GACGATGTGCATTCAGTGGG 59.271 55.000 0.00 0.00 0.00 4.61
206 207 1.441738 TGACGATGTGCATTCAGTGG 58.558 50.000 0.00 0.00 0.00 4.00
207 208 3.541071 TTTGACGATGTGCATTCAGTG 57.459 42.857 0.00 0.00 0.00 3.66
208 209 4.539870 CTTTTTGACGATGTGCATTCAGT 58.460 39.130 0.00 0.00 0.00 3.41
209 210 3.916172 CCTTTTTGACGATGTGCATTCAG 59.084 43.478 0.00 0.00 0.00 3.02
210 211 3.856638 GCCTTTTTGACGATGTGCATTCA 60.857 43.478 0.00 0.00 0.00 2.57
211 212 2.663119 GCCTTTTTGACGATGTGCATTC 59.337 45.455 0.00 0.00 0.00 2.67
212 213 2.035704 TGCCTTTTTGACGATGTGCATT 59.964 40.909 0.00 0.00 0.00 3.56
213 214 1.612950 TGCCTTTTTGACGATGTGCAT 59.387 42.857 0.00 0.00 0.00 3.96
214 215 1.028130 TGCCTTTTTGACGATGTGCA 58.972 45.000 0.00 0.00 0.00 4.57
215 216 1.987770 CATGCCTTTTTGACGATGTGC 59.012 47.619 0.00 0.00 0.00 4.57
216 217 3.557577 TCATGCCTTTTTGACGATGTG 57.442 42.857 0.00 0.00 0.00 3.21
217 218 4.582701 TTTCATGCCTTTTTGACGATGT 57.417 36.364 0.00 0.00 0.00 3.06
218 219 7.579589 TTTATTTCATGCCTTTTTGACGATG 57.420 32.000 0.00 0.00 0.00 3.84
219 220 9.301153 GTATTTATTTCATGCCTTTTTGACGAT 57.699 29.630 0.00 0.00 0.00 3.73
220 221 8.300286 TGTATTTATTTCATGCCTTTTTGACGA 58.700 29.630 0.00 0.00 0.00 4.20
221 222 8.459521 TGTATTTATTTCATGCCTTTTTGACG 57.540 30.769 0.00 0.00 0.00 4.35
222 223 9.638239 TCTGTATTTATTTCATGCCTTTTTGAC 57.362 29.630 0.00 0.00 0.00 3.18
229 230 9.101655 GCATTTTTCTGTATTTATTTCATGCCT 57.898 29.630 0.00 0.00 0.00 4.75
230 231 8.881743 TGCATTTTTCTGTATTTATTTCATGCC 58.118 29.630 0.00 0.00 0.00 4.40
240 241 8.649841 CGTTGATGATTGCATTTTTCTGTATTT 58.350 29.630 0.00 0.00 34.11 1.40
241 242 7.201461 GCGTTGATGATTGCATTTTTCTGTATT 60.201 33.333 0.00 0.00 34.11 1.89
242 243 6.254157 GCGTTGATGATTGCATTTTTCTGTAT 59.746 34.615 0.00 0.00 34.11 2.29
243 244 5.572511 GCGTTGATGATTGCATTTTTCTGTA 59.427 36.000 0.00 0.00 34.11 2.74
244 245 4.386652 GCGTTGATGATTGCATTTTTCTGT 59.613 37.500 0.00 0.00 34.11 3.41
245 246 4.489682 CGCGTTGATGATTGCATTTTTCTG 60.490 41.667 0.00 0.00 34.11 3.02
246 247 3.609373 CGCGTTGATGATTGCATTTTTCT 59.391 39.130 0.00 0.00 34.11 2.52
247 248 3.607641 TCGCGTTGATGATTGCATTTTTC 59.392 39.130 5.77 0.00 34.11 2.29
248 249 3.573598 TCGCGTTGATGATTGCATTTTT 58.426 36.364 5.77 0.00 34.11 1.94
249 250 3.214697 TCGCGTTGATGATTGCATTTT 57.785 38.095 5.77 0.00 34.11 1.82
250 251 2.917701 TCGCGTTGATGATTGCATTT 57.082 40.000 5.77 0.00 34.11 2.32
251 252 2.162208 ACTTCGCGTTGATGATTGCATT 59.838 40.909 5.77 0.00 34.11 3.56
252 253 1.739466 ACTTCGCGTTGATGATTGCAT 59.261 42.857 5.77 0.00 37.47 3.96
253 254 1.128507 GACTTCGCGTTGATGATTGCA 59.871 47.619 5.77 0.00 0.00 4.08
254 255 1.394917 AGACTTCGCGTTGATGATTGC 59.605 47.619 5.77 0.00 0.00 3.56
255 256 3.243877 CCTAGACTTCGCGTTGATGATTG 59.756 47.826 5.77 0.00 0.00 2.67
256 257 3.130516 TCCTAGACTTCGCGTTGATGATT 59.869 43.478 5.77 0.00 0.00 2.57
257 258 2.688446 TCCTAGACTTCGCGTTGATGAT 59.312 45.455 5.77 0.00 0.00 2.45
258 259 2.089201 TCCTAGACTTCGCGTTGATGA 58.911 47.619 5.77 0.00 0.00 2.92
259 260 2.159366 AGTCCTAGACTTCGCGTTGATG 60.159 50.000 5.77 0.00 40.28 3.07
260 261 2.093106 AGTCCTAGACTTCGCGTTGAT 58.907 47.619 5.77 0.00 40.28 2.57
261 262 1.531423 AGTCCTAGACTTCGCGTTGA 58.469 50.000 5.77 0.00 40.28 3.18
270 271 6.990939 GTGAAACCAAGTTTAAGTCCTAGACT 59.009 38.462 0.00 0.00 39.06 3.24
271 272 6.990939 AGTGAAACCAAGTTTAAGTCCTAGAC 59.009 38.462 0.00 0.00 35.77 2.59
272 273 7.133133 AGTGAAACCAAGTTTAAGTCCTAGA 57.867 36.000 0.00 0.00 35.77 2.43
273 274 7.929785 TGTAGTGAAACCAAGTTTAAGTCCTAG 59.070 37.037 0.00 0.00 35.77 3.02
274 275 7.794041 TGTAGTGAAACCAAGTTTAAGTCCTA 58.206 34.615 0.00 0.00 35.77 2.94
275 276 6.655930 TGTAGTGAAACCAAGTTTAAGTCCT 58.344 36.000 0.00 0.00 35.77 3.85
276 277 6.930667 TGTAGTGAAACCAAGTTTAAGTCC 57.069 37.500 0.00 0.00 35.77 3.85
277 278 8.205131 TCTTGTAGTGAAACCAAGTTTAAGTC 57.795 34.615 0.00 0.00 37.38 3.01
278 279 8.570068 TTCTTGTAGTGAAACCAAGTTTAAGT 57.430 30.769 0.00 0.00 37.38 2.24
279 280 9.285770 GTTTCTTGTAGTGAAACCAAGTTTAAG 57.714 33.333 7.80 0.00 44.22 1.85
290 291 7.514721 AGATGGTTAGGTTTCTTGTAGTGAAA 58.485 34.615 0.00 0.00 0.00 2.69
291 292 7.074653 AGATGGTTAGGTTTCTTGTAGTGAA 57.925 36.000 0.00 0.00 0.00 3.18
292 293 6.681729 AGATGGTTAGGTTTCTTGTAGTGA 57.318 37.500 0.00 0.00 0.00 3.41
293 294 7.064728 GCTTAGATGGTTAGGTTTCTTGTAGTG 59.935 40.741 0.00 0.00 0.00 2.74
294 295 7.038231 AGCTTAGATGGTTAGGTTTCTTGTAGT 60.038 37.037 0.00 0.00 0.00 2.73
295 296 7.331791 AGCTTAGATGGTTAGGTTTCTTGTAG 58.668 38.462 0.00 0.00 0.00 2.74
296 297 7.180408 AGAGCTTAGATGGTTAGGTTTCTTGTA 59.820 37.037 0.00 0.00 0.00 2.41
297 298 6.013293 AGAGCTTAGATGGTTAGGTTTCTTGT 60.013 38.462 0.00 0.00 0.00 3.16
298 299 6.410540 AGAGCTTAGATGGTTAGGTTTCTTG 58.589 40.000 0.00 0.00 0.00 3.02
299 300 6.352308 GGAGAGCTTAGATGGTTAGGTTTCTT 60.352 42.308 0.00 0.00 0.00 2.52
300 301 5.129650 GGAGAGCTTAGATGGTTAGGTTTCT 59.870 44.000 0.00 0.00 0.00 2.52
301 302 5.361427 GGAGAGCTTAGATGGTTAGGTTTC 58.639 45.833 0.00 0.00 0.00 2.78
302 303 4.141914 CGGAGAGCTTAGATGGTTAGGTTT 60.142 45.833 0.00 0.00 0.00 3.27
303 304 3.385111 CGGAGAGCTTAGATGGTTAGGTT 59.615 47.826 0.00 0.00 0.00 3.50
304 305 2.959707 CGGAGAGCTTAGATGGTTAGGT 59.040 50.000 0.00 0.00 0.00 3.08
305 306 2.959707 ACGGAGAGCTTAGATGGTTAGG 59.040 50.000 0.00 0.00 0.00 2.69
306 307 4.612943 GAACGGAGAGCTTAGATGGTTAG 58.387 47.826 0.00 0.00 0.00 2.34
307 308 3.066342 CGAACGGAGAGCTTAGATGGTTA 59.934 47.826 0.00 0.00 0.00 2.85
308 309 2.159226 CGAACGGAGAGCTTAGATGGTT 60.159 50.000 0.00 0.00 0.00 3.67
309 310 1.405821 CGAACGGAGAGCTTAGATGGT 59.594 52.381 0.00 0.00 0.00 3.55
310 311 1.866063 GCGAACGGAGAGCTTAGATGG 60.866 57.143 0.00 0.00 0.00 3.51
311 312 1.482278 GCGAACGGAGAGCTTAGATG 58.518 55.000 0.00 0.00 0.00 2.90
312 313 0.029567 CGCGAACGGAGAGCTTAGAT 59.970 55.000 0.00 0.00 34.97 1.98
313 314 1.428219 CGCGAACGGAGAGCTTAGA 59.572 57.895 0.00 0.00 34.97 2.10
314 315 3.984241 CGCGAACGGAGAGCTTAG 58.016 61.111 0.00 0.00 34.97 2.18
324 325 2.598907 CCAAAGTATAATGCCGCGAACG 60.599 50.000 8.23 0.00 39.67 3.95
325 326 2.353579 ACCAAAGTATAATGCCGCGAAC 59.646 45.455 8.23 0.00 0.00 3.95
326 327 2.353269 CACCAAAGTATAATGCCGCGAA 59.647 45.455 8.23 0.00 0.00 4.70
327 328 1.937223 CACCAAAGTATAATGCCGCGA 59.063 47.619 8.23 0.00 0.00 5.87
328 329 1.937223 TCACCAAAGTATAATGCCGCG 59.063 47.619 0.00 0.00 0.00 6.46
329 330 3.853307 GCATCACCAAAGTATAATGCCGC 60.853 47.826 0.00 0.00 0.00 6.53
330 331 3.304659 GGCATCACCAAAGTATAATGCCG 60.305 47.826 8.27 0.00 42.89 5.69
331 332 4.243007 GGCATCACCAAAGTATAATGCC 57.757 45.455 8.27 8.27 45.03 4.40
332 333 3.891366 AGGGCATCACCAAAGTATAATGC 59.109 43.478 0.00 0.00 42.05 3.56
333 334 7.581213 TTTAGGGCATCACCAAAGTATAATG 57.419 36.000 0.00 0.00 42.05 1.90
334 335 7.287696 CCTTTTAGGGCATCACCAAAGTATAAT 59.712 37.037 0.00 0.00 42.05 1.28
335 336 6.605594 CCTTTTAGGGCATCACCAAAGTATAA 59.394 38.462 0.00 0.00 42.05 0.98
336 337 6.069323 TCCTTTTAGGGCATCACCAAAGTATA 60.069 38.462 0.00 0.00 42.05 1.47
337 338 4.956075 CCTTTTAGGGCATCACCAAAGTAT 59.044 41.667 0.00 0.00 42.05 2.12
338 339 4.043561 TCCTTTTAGGGCATCACCAAAGTA 59.956 41.667 0.00 0.00 42.05 2.24
339 340 3.165071 CCTTTTAGGGCATCACCAAAGT 58.835 45.455 0.00 0.00 42.05 2.66
340 341 3.430453 TCCTTTTAGGGCATCACCAAAG 58.570 45.455 0.00 0.00 42.05 2.77
341 342 3.534357 TCCTTTTAGGGCATCACCAAA 57.466 42.857 0.00 0.00 42.05 3.28
342 343 3.161866 GTTCCTTTTAGGGCATCACCAA 58.838 45.455 0.00 0.00 42.05 3.67
343 344 2.556559 GGTTCCTTTTAGGGCATCACCA 60.557 50.000 0.00 0.00 42.05 4.17
344 345 2.100197 GGTTCCTTTTAGGGCATCACC 58.900 52.381 0.00 0.00 35.59 4.02
345 346 2.100197 GGGTTCCTTTTAGGGCATCAC 58.900 52.381 0.00 0.00 35.59 3.06
346 347 2.000048 AGGGTTCCTTTTAGGGCATCA 59.000 47.619 0.00 0.00 35.59 3.07
347 348 2.656002 GAGGGTTCCTTTTAGGGCATC 58.344 52.381 0.00 0.00 35.59 3.91
348 349 1.064685 CGAGGGTTCCTTTTAGGGCAT 60.065 52.381 0.00 0.00 35.59 4.40
349 350 0.326927 CGAGGGTTCCTTTTAGGGCA 59.673 55.000 0.00 0.00 35.59 5.36
350 351 0.327259 ACGAGGGTTCCTTTTAGGGC 59.673 55.000 0.00 0.00 35.59 5.19
351 352 2.708051 GAACGAGGGTTCCTTTTAGGG 58.292 52.381 0.00 0.00 45.48 3.53
361 362 1.358152 TCCTTGGATGAACGAGGGTT 58.642 50.000 0.00 0.00 41.58 4.11
362 363 1.210478 CATCCTTGGATGAACGAGGGT 59.790 52.381 21.56 0.00 41.58 4.34
363 364 1.486310 TCATCCTTGGATGAACGAGGG 59.514 52.381 25.05 2.17 41.58 4.30
364 365 2.988010 TCATCCTTGGATGAACGAGG 57.012 50.000 25.05 2.82 42.46 4.63
369 370 3.448301 GTGCCATTTCATCCTTGGATGAA 59.552 43.478 30.38 30.38 46.24 2.57
370 371 3.025978 GTGCCATTTCATCCTTGGATGA 58.974 45.455 23.89 23.89 39.56 2.92
371 372 2.223641 CGTGCCATTTCATCCTTGGATG 60.224 50.000 20.42 20.42 31.94 3.51
372 373 2.026641 CGTGCCATTTCATCCTTGGAT 58.973 47.619 0.00 0.00 31.94 3.41
373 374 1.462616 CGTGCCATTTCATCCTTGGA 58.537 50.000 0.00 0.00 31.94 3.53
374 375 0.179129 GCGTGCCATTTCATCCTTGG 60.179 55.000 0.00 0.00 0.00 3.61
375 376 0.527113 TGCGTGCCATTTCATCCTTG 59.473 50.000 0.00 0.00 0.00 3.61
376 377 1.406539 GATGCGTGCCATTTCATCCTT 59.593 47.619 0.00 0.00 33.29 3.36
377 378 1.027357 GATGCGTGCCATTTCATCCT 58.973 50.000 0.00 0.00 33.29 3.24
378 379 0.740149 TGATGCGTGCCATTTCATCC 59.260 50.000 0.00 0.00 35.65 3.51
379 380 2.787601 ATGATGCGTGCCATTTCATC 57.212 45.000 0.00 0.00 36.70 2.92
380 381 3.530265 AAATGATGCGTGCCATTTCAT 57.470 38.095 0.86 0.00 38.23 2.57
381 382 3.316071 AAAATGATGCGTGCCATTTCA 57.684 38.095 6.16 0.00 40.78 2.69
382 383 5.042593 TGATAAAATGATGCGTGCCATTTC 58.957 37.500 6.16 0.00 40.78 2.17
383 384 5.008619 TGATAAAATGATGCGTGCCATTT 57.991 34.783 0.86 0.86 42.72 2.32
384 385 4.652421 TGATAAAATGATGCGTGCCATT 57.348 36.364 0.00 0.00 33.29 3.16
385 386 4.859304 ATGATAAAATGATGCGTGCCAT 57.141 36.364 0.00 0.00 36.70 4.40
386 387 4.652421 AATGATAAAATGATGCGTGCCA 57.348 36.364 0.00 0.00 0.00 4.92
387 388 5.284079 AGAAATGATAAAATGATGCGTGCC 58.716 37.500 0.00 0.00 0.00 5.01
388 389 6.817270 AAGAAATGATAAAATGATGCGTGC 57.183 33.333 0.00 0.00 0.00 5.34
389 390 9.467990 CAAAAAGAAATGATAAAATGATGCGTG 57.532 29.630 0.00 0.00 0.00 5.34
390 391 9.206870 ACAAAAAGAAATGATAAAATGATGCGT 57.793 25.926 0.00 0.00 0.00 5.24
391 392 9.467990 CACAAAAAGAAATGATAAAATGATGCG 57.532 29.630 0.00 0.00 0.00 4.73
424 425 6.636454 AATTCAGATAGGGTGTCTTTACCA 57.364 37.500 0.00 0.00 42.69 3.25
425 426 9.628500 AAATAATTCAGATAGGGTGTCTTTACC 57.372 33.333 0.00 0.00 40.10 2.85
454 455 6.319658 ACCAAGGCACAAAAGATGACATATAG 59.680 38.462 0.00 0.00 0.00 1.31
460 461 2.029918 GGACCAAGGCACAAAAGATGAC 60.030 50.000 0.00 0.00 0.00 3.06
461 462 2.238521 GGACCAAGGCACAAAAGATGA 58.761 47.619 0.00 0.00 0.00 2.92
553 558 2.505364 CTTGAAGAAGGGGGCTGGGG 62.505 65.000 0.00 0.00 0.00 4.96
554 559 1.000396 CTTGAAGAAGGGGGCTGGG 60.000 63.158 0.00 0.00 0.00 4.45
555 560 1.680314 GCTTGAAGAAGGGGGCTGG 60.680 63.158 0.00 0.00 0.00 4.85
556 561 1.680314 GGCTTGAAGAAGGGGGCTG 60.680 63.158 0.00 0.00 0.00 4.85
557 562 1.854507 AGGCTTGAAGAAGGGGGCT 60.855 57.895 0.00 0.00 0.00 5.19
558 563 1.379176 GAGGCTTGAAGAAGGGGGC 60.379 63.158 0.00 0.00 0.00 5.80
591 596 1.098869 CGAGACCTAGCTTGCAGAGA 58.901 55.000 0.00 0.00 0.00 3.10
598 603 1.338864 TGACGAGACGAGACCTAGCTT 60.339 52.381 0.00 0.00 0.00 3.74
677 687 3.829044 TGGATACGGTGGCGACGG 61.829 66.667 4.86 4.86 42.51 4.79
679 689 1.518572 CTGTGGATACGGTGGCGAC 60.519 63.158 0.00 0.00 42.51 5.19
680 690 2.889617 CTGTGGATACGGTGGCGA 59.110 61.111 0.00 0.00 42.51 5.54
681 691 2.890474 GCTGTGGATACGGTGGCG 60.890 66.667 0.00 0.00 42.51 5.69
682 692 2.513897 GGCTGTGGATACGGTGGC 60.514 66.667 0.00 0.00 42.51 5.01
683 693 2.189521 GGGCTGTGGATACGGTGG 59.810 66.667 0.00 0.00 42.51 4.61
684 694 2.189521 GGGGCTGTGGATACGGTG 59.810 66.667 0.00 0.00 42.51 4.94
685 695 3.087906 GGGGGCTGTGGATACGGT 61.088 66.667 0.00 0.00 42.51 4.83
896 921 6.599638 CCCACTACTCAGATGATATGATACGA 59.400 42.308 0.00 0.00 0.00 3.43
897 922 6.375736 ACCCACTACTCAGATGATATGATACG 59.624 42.308 0.00 0.00 0.00 3.06
900 925 7.395772 CAGTACCCACTACTCAGATGATATGAT 59.604 40.741 0.00 0.00 32.90 2.45
901 926 6.717084 CAGTACCCACTACTCAGATGATATGA 59.283 42.308 0.00 0.00 32.90 2.15
902 927 6.717084 TCAGTACCCACTACTCAGATGATATG 59.283 42.308 0.00 0.00 32.90 1.78
903 928 6.717540 GTCAGTACCCACTACTCAGATGATAT 59.282 42.308 0.00 0.00 32.90 1.63
904 929 6.062749 GTCAGTACCCACTACTCAGATGATA 58.937 44.000 0.00 0.00 32.90 2.15
905 930 4.890581 GTCAGTACCCACTACTCAGATGAT 59.109 45.833 0.00 0.00 32.90 2.45
908 933 4.263994 ACTGTCAGTACCCACTACTCAGAT 60.264 45.833 2.87 0.00 32.90 2.90
954 979 4.244802 GCGACCGAGAGAGGCGAG 62.245 72.222 0.00 0.00 34.41 5.03
1023 1048 1.448893 GTTGCGCTTACCGGGATCA 60.449 57.895 9.73 0.00 37.44 2.92
1038 1063 5.449304 GGTAAATTTTCTGGTGAGACGTTG 58.551 41.667 0.00 0.00 0.00 4.10
1039 1064 4.517832 GGGTAAATTTTCTGGTGAGACGTT 59.482 41.667 0.00 0.00 0.00 3.99
1041 1066 4.154195 CAGGGTAAATTTTCTGGTGAGACG 59.846 45.833 0.00 0.00 0.00 4.18
1049 1074 7.598869 GGTAAGAAAAGCAGGGTAAATTTTCTG 59.401 37.037 11.31 3.97 46.12 3.02
1051 1076 7.667557 AGGTAAGAAAAGCAGGGTAAATTTTC 58.332 34.615 0.00 0.00 40.36 2.29
1052 1077 7.612065 AGGTAAGAAAAGCAGGGTAAATTTT 57.388 32.000 0.00 0.00 0.00 1.82
1053 1078 8.168058 TCTAGGTAAGAAAAGCAGGGTAAATTT 58.832 33.333 0.00 0.00 0.00 1.82
1054 1079 7.696017 TCTAGGTAAGAAAAGCAGGGTAAATT 58.304 34.615 0.00 0.00 0.00 1.82
1055 1080 7.266905 TCTAGGTAAGAAAAGCAGGGTAAAT 57.733 36.000 0.00 0.00 0.00 1.40
1143 1168 3.862267 CCAATCGAAACAAGCAAACACAA 59.138 39.130 0.00 0.00 0.00 3.33
1151 1176 1.469767 GGCCATCCAATCGAAACAAGC 60.470 52.381 0.00 0.00 0.00 4.01
1159 1184 1.039233 AAAGGCAGGCCATCCAATCG 61.039 55.000 13.63 0.00 38.92 3.34
1209 1234 0.095245 CACCATACACTGAAAGCGCG 59.905 55.000 0.00 0.00 37.60 6.86
1217 1242 2.481568 CTCACAAGCACACCATACACTG 59.518 50.000 0.00 0.00 0.00 3.66
1226 1251 2.223923 ACTCTGACTCTCACAAGCACAC 60.224 50.000 0.00 0.00 0.00 3.82
1229 1254 3.254411 CACTACTCTGACTCTCACAAGCA 59.746 47.826 0.00 0.00 0.00 3.91
1230 1255 3.832276 CACTACTCTGACTCTCACAAGC 58.168 50.000 0.00 0.00 0.00 4.01
1252 1277 3.546020 CCGAACACACAAACTTGCTAGTG 60.546 47.826 0.36 8.06 34.01 2.74
1258 1283 1.826327 CTGCCGAACACACAAACTTG 58.174 50.000 0.00 0.00 0.00 3.16
1306 1337 1.078567 GAGGAGCAGGCCTTCACAG 60.079 63.158 0.00 0.00 38.73 3.66
1347 1378 6.202188 TCAAGAATTCAGGTGAAGTTACGAAC 59.798 38.462 8.44 0.00 37.48 3.95
1351 1382 7.391833 AGGAATCAAGAATTCAGGTGAAGTTAC 59.608 37.037 8.44 2.12 44.81 2.50
1416 1464 0.250038 GAGCAGCACCAACTGACTCA 60.250 55.000 0.00 0.00 40.25 3.41
1468 1516 4.056050 ACGACGACTTAAGCACTTGATTT 58.944 39.130 0.00 0.00 0.00 2.17
1504 1618 7.147408 ACAAGATACAGAGCTCCCTATGATTTT 60.147 37.037 10.93 0.00 34.45 1.82
1505 1619 6.328672 ACAAGATACAGAGCTCCCTATGATTT 59.671 38.462 10.93 0.00 34.45 2.17
1535 1673 5.182950 TCTGAACAAAGAACAAAGACAGCAA 59.817 36.000 0.00 0.00 0.00 3.91
1574 1712 6.182627 TGCATGAAGAGGTACATGAAGAATT 58.817 36.000 0.00 0.00 44.28 2.17
1581 1719 5.821470 AGAAGATTGCATGAAGAGGTACATG 59.179 40.000 0.00 0.00 44.32 3.21
1582 1720 5.999044 AGAAGATTGCATGAAGAGGTACAT 58.001 37.500 0.00 0.00 0.00 2.29
1583 1721 5.426689 AGAAGATTGCATGAAGAGGTACA 57.573 39.130 0.00 0.00 0.00 2.90
1584 1722 5.645497 ACAAGAAGATTGCATGAAGAGGTAC 59.355 40.000 0.00 0.00 0.00 3.34
1585 1723 5.809001 ACAAGAAGATTGCATGAAGAGGTA 58.191 37.500 0.00 0.00 0.00 3.08
1586 1724 4.660168 ACAAGAAGATTGCATGAAGAGGT 58.340 39.130 0.00 0.00 0.00 3.85
1587 1725 4.698780 TGACAAGAAGATTGCATGAAGAGG 59.301 41.667 0.00 0.00 0.00 3.69
1588 1726 5.411977 AGTGACAAGAAGATTGCATGAAGAG 59.588 40.000 0.00 0.00 0.00 2.85
1589 1727 5.180680 CAGTGACAAGAAGATTGCATGAAGA 59.819 40.000 0.00 0.00 0.00 2.87
1590 1728 5.048921 ACAGTGACAAGAAGATTGCATGAAG 60.049 40.000 0.00 0.00 0.00 3.02
1591 1729 4.823442 ACAGTGACAAGAAGATTGCATGAA 59.177 37.500 0.00 0.00 0.00 2.57
1592 1730 4.392047 ACAGTGACAAGAAGATTGCATGA 58.608 39.130 0.00 0.00 0.00 3.07
1593 1731 4.761235 ACAGTGACAAGAAGATTGCATG 57.239 40.909 0.00 0.00 0.00 4.06
1594 1732 5.779529 AAACAGTGACAAGAAGATTGCAT 57.220 34.783 0.00 0.00 0.00 3.96
1630 1768 3.668447 AGGCTCTGGTCAAATATATGCG 58.332 45.455 0.00 0.00 0.00 4.73
1637 1775 1.849039 AGGCATAGGCTCTGGTCAAAT 59.151 47.619 0.00 0.00 40.87 2.32
1735 1873 9.692749 CATAGCTAAATTACGTTCAGATAAGGA 57.307 33.333 0.00 0.00 0.00 3.36
1740 1878 8.827677 GGTTTCATAGCTAAATTACGTTCAGAT 58.172 33.333 0.00 0.00 0.00 2.90
1782 1921 5.528690 ACACCATTGCATGACTACATATCAC 59.471 40.000 0.00 0.00 35.09 3.06
1821 1960 6.264832 TCTTGCACAGTTCAACAAGTAATTG 58.735 36.000 0.45 0.45 40.29 2.32
1826 1965 3.347216 ACTCTTGCACAGTTCAACAAGT 58.653 40.909 0.00 0.00 40.29 3.16
1835 1974 4.502259 CCACTAAGAAGACTCTTGCACAGT 60.502 45.833 0.00 0.00 42.11 3.55
2002 2161 1.285667 TCAGGCCCATGTCATCACAAT 59.714 47.619 0.00 0.00 35.64 2.71
2072 2231 2.174319 GCGAAAGATCAGCCGGGTC 61.174 63.158 1.27 0.00 0.00 4.46
2682 2841 2.693591 TCATAGAAAATCCGACGAGCCT 59.306 45.455 0.00 0.00 0.00 4.58
3130 3291 0.306840 CCACACATCGCATCATGCTC 59.693 55.000 8.30 0.00 42.25 4.26
3367 3528 6.262273 AGGCATATATAAAACCCAACAACTCG 59.738 38.462 0.00 0.00 0.00 4.18
3368 3529 7.068226 ACAGGCATATATAAAACCCAACAACTC 59.932 37.037 0.00 0.00 0.00 3.01
3460 3622 7.326968 TCATAACATGAATGCACGGAAATAA 57.673 32.000 0.00 0.00 36.11 1.40
3559 3764 5.894298 ACCTCAGATACAATGCTATCCAA 57.106 39.130 0.00 0.00 0.00 3.53
3623 3829 3.053693 TGGCTAACAGCTACATCCCAAAT 60.054 43.478 0.00 0.00 41.99 2.32
3754 4043 5.305386 TGTCAAGGACATTCAGAGAGAAGAA 59.695 40.000 0.00 0.00 40.15 2.52
3925 4214 9.765795 CTAAGTACTAAACATAGGCAGCTTTAT 57.234 33.333 0.00 0.00 0.00 1.40
3927 4216 6.539103 GCTAAGTACTAAACATAGGCAGCTTT 59.461 38.462 0.00 0.00 31.41 3.51
4081 4370 0.242017 GCGCAAAAGCTCCTGTGAAT 59.758 50.000 0.30 0.00 0.00 2.57
4096 4385 2.046023 CCCTTCATGTCAGGCGCA 60.046 61.111 10.83 0.00 0.00 6.09
4132 4421 4.819761 GCAGCGCGGATGGAGTCA 62.820 66.667 13.03 0.00 0.00 3.41
4195 4484 2.197324 TCCTTGGTGGCGGCTTTT 59.803 55.556 11.43 0.00 35.26 2.27
4270 4559 2.592993 CCCTTCCTTCAGCCCGTCA 61.593 63.158 0.00 0.00 0.00 4.35
4420 4709 2.240493 ACACGTCCTTCCTGTTCTTG 57.760 50.000 0.00 0.00 0.00 3.02
4450 4739 3.843027 TCTTCTTCTCCAGCTCCTTCAAT 59.157 43.478 0.00 0.00 0.00 2.57
4451 4740 3.242867 TCTTCTTCTCCAGCTCCTTCAA 58.757 45.455 0.00 0.00 0.00 2.69
4607 4896 2.037251 CTCCGTCTTCCACTTCCTGAAA 59.963 50.000 0.00 0.00 0.00 2.69
4780 5078 0.611714 CTACCCAACCAACTACGGCT 59.388 55.000 0.00 0.00 0.00 5.52
4783 5081 3.389925 TCAACTACCCAACCAACTACG 57.610 47.619 0.00 0.00 0.00 3.51
4840 5138 3.181485 GGTACTGTATGCAGGAGTGTCTC 60.181 52.174 15.65 0.00 46.62 3.36
4851 5149 2.470821 CGCCAACTAGGTACTGTATGC 58.529 52.381 0.00 0.00 41.52 3.14
4877 5175 0.448197 CTCAGCAGCAGCAACATCTG 59.552 55.000 3.17 0.00 45.49 2.90
4912 5210 4.043750 CGCAAAACAAGATTTCTGCAGAA 58.956 39.130 25.16 25.16 0.00 3.02
4913 5211 3.550639 CCGCAAAACAAGATTTCTGCAGA 60.551 43.478 13.74 13.74 0.00 4.26
4918 5216 3.705604 CACACCGCAAAACAAGATTTCT 58.294 40.909 0.00 0.00 0.00 2.52
4988 5291 7.035612 GCACACCCTCCTTTAATTTAAGATTG 58.964 38.462 5.78 0.00 0.00 2.67
5023 5326 5.446473 GCAACACCATTCTATTCTTCAGACG 60.446 44.000 0.00 0.00 0.00 4.18
5032 5335 3.456380 ACCAGGCAACACCATTCTATT 57.544 42.857 0.00 0.00 43.14 1.73
5036 5339 1.750778 CCATACCAGGCAACACCATTC 59.249 52.381 0.00 0.00 43.14 2.67
5059 5372 4.461081 AGCCGGAGAATATCATACTCTGTC 59.539 45.833 5.05 0.00 35.88 3.51
5089 5403 5.106038 CCACATGTCATTGATACAGCAAAGT 60.106 40.000 0.00 0.00 0.00 2.66
5183 5498 6.578691 GCTCAAAGCTATATTACGGTTTACG 58.421 40.000 0.00 0.00 43.11 3.18
5188 5503 4.037684 ACTCGCTCAAAGCTATATTACGGT 59.962 41.667 0.00 0.00 39.60 4.83
5189 5504 4.547532 ACTCGCTCAAAGCTATATTACGG 58.452 43.478 0.00 0.00 39.60 4.02
5225 5540 2.185004 ACAGGTCAATAGCACACCAC 57.815 50.000 0.00 0.00 31.99 4.16
5233 5548 7.315142 ACAAAACATATGCAACAGGTCAATAG 58.685 34.615 1.58 0.00 0.00 1.73
5250 5565 4.190001 TGTCAGCATTGCAAACAAAACAT 58.810 34.783 11.91 0.00 39.77 2.71
5294 5859 2.877168 CCACCATTGCTCTTGCTCTATC 59.123 50.000 0.00 0.00 40.48 2.08
5300 5865 0.179119 GCATCCACCATTGCTCTTGC 60.179 55.000 0.00 0.00 35.95 4.01
5301 5866 1.471119 AGCATCCACCATTGCTCTTG 58.529 50.000 0.00 0.00 45.83 3.02
5302 5867 3.994165 AGCATCCACCATTGCTCTT 57.006 47.368 0.00 0.00 45.83 2.85
5306 5871 1.180029 ACTTGAGCATCCACCATTGC 58.820 50.000 0.00 0.00 39.17 3.56
5307 5872 3.508793 AGAAACTTGAGCATCCACCATTG 59.491 43.478 0.00 0.00 0.00 2.82
5308 5873 3.760684 GAGAAACTTGAGCATCCACCATT 59.239 43.478 0.00 0.00 0.00 3.16
5309 5874 3.245016 TGAGAAACTTGAGCATCCACCAT 60.245 43.478 0.00 0.00 0.00 3.55
5310 5875 2.106338 TGAGAAACTTGAGCATCCACCA 59.894 45.455 0.00 0.00 0.00 4.17
5345 5921 9.747898 TTTGCTCCTTCTATTTCCTTACAAATA 57.252 29.630 0.00 0.00 0.00 1.40
5443 6019 5.124297 TGCTAGCGGTGCTCGTAATAATATA 59.876 40.000 10.77 0.00 40.44 0.86
5649 6244 4.713824 ATCACCTCAACATGCAAAGATG 57.286 40.909 0.00 0.00 0.00 2.90
5650 6245 5.889853 ACATATCACCTCAACATGCAAAGAT 59.110 36.000 0.00 0.00 0.00 2.40
5651 6246 5.255687 ACATATCACCTCAACATGCAAAGA 58.744 37.500 0.00 0.00 0.00 2.52
5652 6247 5.571784 ACATATCACCTCAACATGCAAAG 57.428 39.130 0.00 0.00 0.00 2.77
5653 6248 5.981088 AACATATCACCTCAACATGCAAA 57.019 34.783 0.00 0.00 0.00 3.68
5654 6249 5.712004 CAAACATATCACCTCAACATGCAA 58.288 37.500 0.00 0.00 0.00 4.08
5655 6250 4.380761 GCAAACATATCACCTCAACATGCA 60.381 41.667 0.00 0.00 0.00 3.96
5656 6251 4.107622 GCAAACATATCACCTCAACATGC 58.892 43.478 0.00 0.00 0.00 4.06
5657 6252 5.313520 TGCAAACATATCACCTCAACATG 57.686 39.130 0.00 0.00 0.00 3.21
5658 6253 5.419788 ACATGCAAACATATCACCTCAACAT 59.580 36.000 0.00 0.00 33.67 2.71
5659 6254 4.766373 ACATGCAAACATATCACCTCAACA 59.234 37.500 0.00 0.00 33.67 3.33
5660 6255 5.314923 ACATGCAAACATATCACCTCAAC 57.685 39.130 0.00 0.00 33.67 3.18
5661 6256 5.476254 TCAACATGCAAACATATCACCTCAA 59.524 36.000 0.00 0.00 33.67 3.02
5662 6257 5.008980 TCAACATGCAAACATATCACCTCA 58.991 37.500 0.00 0.00 33.67 3.86
5663 6258 5.565592 TCAACATGCAAACATATCACCTC 57.434 39.130 0.00 0.00 33.67 3.85
5664 6259 5.981088 TTCAACATGCAAACATATCACCT 57.019 34.783 0.00 0.00 33.67 4.00
5665 6260 7.418840 TTTTTCAACATGCAAACATATCACC 57.581 32.000 0.00 0.00 33.67 4.02
5753 6348 8.835439 CCAAAAATTTATATTTATGTGGTGCCC 58.165 33.333 0.00 0.00 32.85 5.36
5810 6405 7.479291 ACCGTCACGTTGAAAAATATATTTTCG 59.521 33.333 20.86 20.30 38.92 3.46
5846 6441 5.603170 ATGGCCTCACAAGGAAATTATTG 57.397 39.130 3.32 0.00 46.67 1.90
5849 6444 6.894654 TCATTAATGGCCTCACAAGGAAATTA 59.105 34.615 15.36 0.00 46.67 1.40
5855 6450 3.889815 TCTCATTAATGGCCTCACAAGG 58.110 45.455 15.36 0.00 46.44 3.61
5856 6451 5.393461 GGTTTCTCATTAATGGCCTCACAAG 60.393 44.000 15.36 3.23 0.00 3.16
5870 6465 1.376812 GGACCGCCGGTTTCTCATT 60.377 57.895 11.54 0.00 35.25 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.