Multiple sequence alignment - TraesCS6D01G385800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G385800 chr6D 100.000 3414 0 0 1 3414 463645392 463641979 0.000000e+00 6305.0
1 TraesCS6D01G385800 chr6B 94.483 1722 42 17 873 2590 706998311 706996639 0.000000e+00 2604.0
2 TraesCS6D01G385800 chr6B 93.901 869 33 8 1 853 706999395 706998531 0.000000e+00 1293.0
3 TraesCS6D01G385800 chr6B 81.410 1291 159 44 1371 2605 706980446 706979181 0.000000e+00 979.0
4 TraesCS6D01G385800 chr6B 75.176 427 90 10 2997 3414 444301709 444301290 1.620000e-43 187.0
5 TraesCS6D01G385800 chr6B 100.000 33 0 0 837 869 706998517 706998485 1.020000e-05 62.1
6 TraesCS6D01G385800 chr6A 93.244 1717 78 18 894 2590 610286972 610285274 0.000000e+00 2494.0
7 TraesCS6D01G385800 chr6A 83.559 1916 190 70 998 2806 610282435 610280538 0.000000e+00 1677.0
8 TraesCS6D01G385800 chr6A 93.989 732 25 8 128 853 610287948 610287230 0.000000e+00 1090.0
9 TraesCS6D01G385800 chr6A 91.971 137 1 1 1 137 610288485 610288359 2.090000e-42 183.0
10 TraesCS6D01G385800 chr2B 81.068 412 67 7 3010 3414 12210956 12211363 5.500000e-83 318.0
11 TraesCS6D01G385800 chr2B 80.825 412 68 7 3010 3414 12197229 12197636 2.560000e-81 313.0
12 TraesCS6D01G385800 chr3A 78.190 431 79 12 2991 3414 700336850 700336428 9.400000e-66 261.0
13 TraesCS6D01G385800 chr3A 91.262 103 8 1 380 482 77405028 77404927 4.590000e-29 139.0
14 TraesCS6D01G385800 chr5D 74.251 501 99 23 2835 3318 339764236 339763749 2.090000e-42 183.0
15 TraesCS6D01G385800 chr7D 77.174 276 52 9 3013 3284 597038085 597037817 2.120000e-32 150.0
16 TraesCS6D01G385800 chr7D 89.655 116 11 1 372 487 119737458 119737344 2.750000e-31 147.0
17 TraesCS6D01G385800 chr7D 76.812 276 53 9 3013 3284 597039553 597039285 9.870000e-31 145.0
18 TraesCS6D01G385800 chr1D 92.157 102 8 0 378 479 116786213 116786112 9.870000e-31 145.0
19 TraesCS6D01G385800 chr1D 92.857 98 7 0 381 478 367413278 367413181 3.550000e-30 143.0
20 TraesCS6D01G385800 chr5B 92.857 98 7 0 382 479 147461825 147461728 3.550000e-30 143.0
21 TraesCS6D01G385800 chr3D 92.000 100 8 0 380 479 25349438 25349339 1.280000e-29 141.0
22 TraesCS6D01G385800 chr1B 76.506 166 37 2 3013 3177 646858830 646858994 4.690000e-14 89.8
23 TraesCS6D01G385800 chr7A 84.746 59 7 1 3013 3069 725641766 725641824 1.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G385800 chr6D 463641979 463645392 3413 True 6305.0 6305 100.00000 1 3414 1 chr6D.!!$R1 3413
1 TraesCS6D01G385800 chr6B 706996639 706999395 2756 True 1319.7 2604 96.12800 1 2590 3 chr6B.!!$R3 2589
2 TraesCS6D01G385800 chr6B 706979181 706980446 1265 True 979.0 979 81.41000 1371 2605 1 chr6B.!!$R2 1234
3 TraesCS6D01G385800 chr6A 610280538 610288485 7947 True 1361.0 2494 90.69075 1 2806 4 chr6A.!!$R1 2805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 1577 0.39206 ACCGATCGCAACCCTAAACC 60.392 55.0 10.32 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2852 8133 0.104882 TAGGTCAGGTGGTTGTGGGA 60.105 55.0 0.0 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 568 3.517296 TGAAAGGCAGATGTTTACCCA 57.483 42.857 0.00 0.00 0.00 4.51
158 588 3.493350 CCAGTACATGCTCCGCTAGAAAT 60.493 47.826 0.00 0.00 0.00 2.17
161 591 3.482156 ACATGCTCCGCTAGAAATGAT 57.518 42.857 0.00 0.00 0.00 2.45
299 729 5.414454 GTCCATTGCTAAGTGTATTTGGTGA 59.586 40.000 0.00 0.00 0.00 4.02
390 824 4.644685 GCCAAATAAGCAAATACTCCCTCA 59.355 41.667 0.00 0.00 0.00 3.86
488 922 5.130477 GGATGGAGGGAGTACTTATTTGACA 59.870 44.000 0.00 0.00 0.00 3.58
729 1170 2.747446 GCTCAAAATTCCAAGGCTACGA 59.253 45.455 0.00 0.00 0.00 3.43
742 1183 2.538449 AGGCTACGAATATTTTGACGCG 59.462 45.455 3.53 3.53 0.00 6.01
869 1340 1.267261 ACTTAATCTCCCTCGATCGCG 59.733 52.381 11.09 3.62 39.35 5.87
870 1341 1.535896 CTTAATCTCCCTCGATCGCGA 59.464 52.381 13.09 13.09 45.71 5.87
871 1342 1.822506 TAATCTCCCTCGATCGCGAT 58.177 50.000 23.97 23.97 46.80 4.58
887 1555 0.523546 CGATGACTTGACCGAGACCG 60.524 60.000 0.00 0.00 0.00 4.79
907 1575 0.899720 AGACCGATCGCAACCCTAAA 59.100 50.000 10.32 0.00 0.00 1.85
908 1576 1.004595 GACCGATCGCAACCCTAAAC 58.995 55.000 10.32 0.00 0.00 2.01
909 1577 0.392060 ACCGATCGCAACCCTAAACC 60.392 55.000 10.32 0.00 0.00 3.27
911 1579 1.663695 CGATCGCAACCCTAAACCAT 58.336 50.000 0.26 0.00 0.00 3.55
929 1597 1.028330 ATGCATGGCAACCTGTCGAG 61.028 55.000 0.00 0.00 43.62 4.04
931 1599 1.672030 CATGGCAACCTGTCGAGCA 60.672 57.895 0.00 0.00 0.00 4.26
932 1600 1.672356 ATGGCAACCTGTCGAGCAC 60.672 57.895 0.00 0.00 0.00 4.40
991 1663 0.463833 GCCCATCCCCAAGACTAACG 60.464 60.000 0.00 0.00 0.00 3.18
1015 1687 0.659957 GAACATGAGCGCCTTGATCC 59.340 55.000 2.29 0.00 29.76 3.36
1329 2001 0.392998 CCATCTGCTACGGCACCTTT 60.393 55.000 0.00 0.00 44.28 3.11
1572 2265 1.421410 GAGAAACATGCGCCGACGAT 61.421 55.000 4.18 0.00 43.93 3.73
1685 2381 3.183775 GTCGACAATAAGCAAGTGAACGT 59.816 43.478 11.55 0.00 0.00 3.99
1868 2594 2.353323 GACGGTGGATTCCCTTGTAAC 58.647 52.381 0.00 0.00 0.00 2.50
1876 2602 4.017958 TGGATTCCCTTGTAACTTGGCATA 60.018 41.667 0.00 0.00 0.00 3.14
2029 2755 0.030908 GCTGACCGAATACCTCCTCG 59.969 60.000 0.00 0.00 34.83 4.63
2070 2796 7.646526 CGAAAGTATATACTCGGTTTCACATCA 59.353 37.037 15.72 0.00 34.99 3.07
2071 2797 9.477484 GAAAGTATATACTCGGTTTCACATCAT 57.523 33.333 15.72 0.00 34.99 2.45
2396 3146 2.620585 ACAGAAGCAAGAGCCAGAAAAC 59.379 45.455 0.00 0.00 43.56 2.43
2575 7851 2.159282 CCCTACACAGTGATCACCGTAC 60.159 54.545 22.21 0.00 0.00 3.67
2577 7853 3.130516 CCTACACAGTGATCACCGTACAT 59.869 47.826 22.21 9.62 0.00 2.29
2783 8059 3.841643 TCAACTAGGCTAGTAACGTTGC 58.158 45.455 26.47 10.16 38.26 4.17
2806 8087 4.932799 CGTATTACATGAATCCGGCCATAA 59.067 41.667 2.24 0.00 0.00 1.90
2807 8088 5.584649 CGTATTACATGAATCCGGCCATAAT 59.415 40.000 2.24 1.19 0.00 1.28
2808 8089 5.902613 ATTACATGAATCCGGCCATAATG 57.097 39.130 2.24 0.00 0.00 1.90
2809 8090 2.517959 ACATGAATCCGGCCATAATGG 58.482 47.619 2.24 0.00 41.55 3.16
2810 8091 2.108075 ACATGAATCCGGCCATAATGGA 59.892 45.455 2.24 0.00 40.96 3.41
2811 8092 2.270352 TGAATCCGGCCATAATGGAC 57.730 50.000 2.24 0.00 44.03 4.02
2816 8097 4.065110 GGCCATAATGGACGGCTC 57.935 61.111 0.00 0.00 45.50 4.70
2817 8098 1.961277 GGCCATAATGGACGGCTCG 60.961 63.158 0.00 0.00 45.50 5.03
2818 8099 2.607892 GCCATAATGGACGGCTCGC 61.608 63.158 0.00 0.00 40.96 5.03
2819 8100 2.310233 CCATAATGGACGGCTCGCG 61.310 63.158 0.00 0.00 40.96 5.87
2820 8101 2.029073 ATAATGGACGGCTCGCGG 59.971 61.111 6.13 0.00 0.00 6.46
2821 8102 4.884257 TAATGGACGGCTCGCGGC 62.884 66.667 6.13 8.86 40.90 6.53
2843 8124 4.529219 CCGCAGCTATCACGCCCA 62.529 66.667 0.00 0.00 0.00 5.36
2844 8125 2.280389 CGCAGCTATCACGCCCAT 60.280 61.111 0.00 0.00 0.00 4.00
2845 8126 2.313172 CGCAGCTATCACGCCCATC 61.313 63.158 0.00 0.00 0.00 3.51
2846 8127 1.070445 GCAGCTATCACGCCCATCT 59.930 57.895 0.00 0.00 0.00 2.90
2847 8128 0.948141 GCAGCTATCACGCCCATCTC 60.948 60.000 0.00 0.00 0.00 2.75
2848 8129 0.665670 CAGCTATCACGCCCATCTCG 60.666 60.000 0.00 0.00 0.00 4.04
2849 8130 2.024319 GCTATCACGCCCATCTCGC 61.024 63.158 0.00 0.00 0.00 5.03
2856 8137 3.928779 GCCCATCTCGCGATCCCA 61.929 66.667 10.36 0.00 0.00 4.37
2857 8138 2.029666 CCCATCTCGCGATCCCAC 59.970 66.667 10.36 0.00 0.00 4.61
2858 8139 2.796193 CCCATCTCGCGATCCCACA 61.796 63.158 10.36 0.00 0.00 4.17
2859 8140 1.143838 CCATCTCGCGATCCCACAA 59.856 57.895 10.36 0.00 0.00 3.33
2860 8141 1.154205 CCATCTCGCGATCCCACAAC 61.154 60.000 10.36 0.00 0.00 3.32
2861 8142 1.144057 ATCTCGCGATCCCACAACC 59.856 57.895 10.36 0.00 0.00 3.77
2862 8143 1.613317 ATCTCGCGATCCCACAACCA 61.613 55.000 10.36 0.00 0.00 3.67
2863 8144 2.047655 TCGCGATCCCACAACCAC 60.048 61.111 3.71 0.00 0.00 4.16
2864 8145 3.124921 CGCGATCCCACAACCACC 61.125 66.667 0.00 0.00 0.00 4.61
2865 8146 2.351276 GCGATCCCACAACCACCT 59.649 61.111 0.00 0.00 0.00 4.00
2866 8147 2.040544 GCGATCCCACAACCACCTG 61.041 63.158 0.00 0.00 0.00 4.00
2867 8148 1.676968 CGATCCCACAACCACCTGA 59.323 57.895 0.00 0.00 0.00 3.86
2868 8149 0.673644 CGATCCCACAACCACCTGAC 60.674 60.000 0.00 0.00 0.00 3.51
2869 8150 0.322546 GATCCCACAACCACCTGACC 60.323 60.000 0.00 0.00 0.00 4.02
2870 8151 0.772124 ATCCCACAACCACCTGACCT 60.772 55.000 0.00 0.00 0.00 3.85
2871 8152 0.104882 TCCCACAACCACCTGACCTA 60.105 55.000 0.00 0.00 0.00 3.08
2872 8153 0.768622 CCCACAACCACCTGACCTAA 59.231 55.000 0.00 0.00 0.00 2.69
2873 8154 1.144093 CCCACAACCACCTGACCTAAA 59.856 52.381 0.00 0.00 0.00 1.85
2874 8155 2.227194 CCACAACCACCTGACCTAAAC 58.773 52.381 0.00 0.00 0.00 2.01
2875 8156 2.227194 CACAACCACCTGACCTAAACC 58.773 52.381 0.00 0.00 0.00 3.27
2876 8157 2.132686 ACAACCACCTGACCTAAACCT 58.867 47.619 0.00 0.00 0.00 3.50
2877 8158 3.071892 CACAACCACCTGACCTAAACCTA 59.928 47.826 0.00 0.00 0.00 3.08
2878 8159 3.072038 ACAACCACCTGACCTAAACCTAC 59.928 47.826 0.00 0.00 0.00 3.18
2879 8160 1.897802 ACCACCTGACCTAAACCTACG 59.102 52.381 0.00 0.00 0.00 3.51
2880 8161 1.405121 CCACCTGACCTAAACCTACGC 60.405 57.143 0.00 0.00 0.00 4.42
2881 8162 1.274167 CACCTGACCTAAACCTACGCA 59.726 52.381 0.00 0.00 0.00 5.24
2882 8163 1.274447 ACCTGACCTAAACCTACGCAC 59.726 52.381 0.00 0.00 0.00 5.34
2883 8164 1.625616 CTGACCTAAACCTACGCACG 58.374 55.000 0.00 0.00 0.00 5.34
2884 8165 0.388907 TGACCTAAACCTACGCACGC 60.389 55.000 0.00 0.00 0.00 5.34
2885 8166 1.079612 ACCTAAACCTACGCACGCC 60.080 57.895 0.00 0.00 0.00 5.68
2886 8167 1.812507 CCTAAACCTACGCACGCCC 60.813 63.158 0.00 0.00 0.00 6.13
2887 8168 2.125991 TAAACCTACGCACGCCCG 60.126 61.111 0.00 0.00 0.00 6.13
2888 8169 3.646023 TAAACCTACGCACGCCCGG 62.646 63.158 0.00 0.00 0.00 5.73
2909 8190 3.727116 GTGCACACACACACATACG 57.273 52.632 13.17 0.00 46.61 3.06
2910 8191 0.384230 GTGCACACACACACATACGC 60.384 55.000 13.17 0.00 46.61 4.42
2911 8192 0.811616 TGCACACACACACATACGCA 60.812 50.000 0.00 0.00 0.00 5.24
2912 8193 0.384230 GCACACACACACATACGCAC 60.384 55.000 0.00 0.00 0.00 5.34
2913 8194 0.933796 CACACACACACATACGCACA 59.066 50.000 0.00 0.00 0.00 4.57
2914 8195 0.934496 ACACACACACATACGCACAC 59.066 50.000 0.00 0.00 0.00 3.82
2915 8196 1.217001 CACACACACATACGCACACT 58.783 50.000 0.00 0.00 0.00 3.55
2916 8197 1.192312 CACACACACATACGCACACTC 59.808 52.381 0.00 0.00 0.00 3.51
2917 8198 1.068588 ACACACACATACGCACACTCT 59.931 47.619 0.00 0.00 0.00 3.24
2918 8199 2.295070 ACACACACATACGCACACTCTA 59.705 45.455 0.00 0.00 0.00 2.43
2919 8200 2.917343 CACACACATACGCACACTCTAG 59.083 50.000 0.00 0.00 0.00 2.43
2920 8201 2.094700 ACACACATACGCACACTCTAGG 60.095 50.000 0.00 0.00 0.00 3.02
2921 8202 1.135083 ACACATACGCACACTCTAGGC 60.135 52.381 0.00 0.00 0.00 3.93
2922 8203 1.135139 CACATACGCACACTCTAGGCT 59.865 52.381 0.00 0.00 0.00 4.58
2923 8204 2.357952 CACATACGCACACTCTAGGCTA 59.642 50.000 0.00 0.00 0.00 3.93
2924 8205 2.358267 ACATACGCACACTCTAGGCTAC 59.642 50.000 0.00 0.00 0.00 3.58
2925 8206 2.414994 TACGCACACTCTAGGCTACT 57.585 50.000 0.00 0.00 0.00 2.57
2926 8207 2.414994 ACGCACACTCTAGGCTACTA 57.585 50.000 0.00 0.00 0.00 1.82
2927 8208 2.015587 ACGCACACTCTAGGCTACTAC 58.984 52.381 0.00 0.00 0.00 2.73
2928 8209 2.014857 CGCACACTCTAGGCTACTACA 58.985 52.381 0.00 0.00 0.00 2.74
2929 8210 2.223294 CGCACACTCTAGGCTACTACAC 60.223 54.545 0.00 0.00 0.00 2.90
2930 8211 2.753452 GCACACTCTAGGCTACTACACA 59.247 50.000 0.00 0.00 0.00 3.72
2931 8212 3.192844 GCACACTCTAGGCTACTACACAA 59.807 47.826 0.00 0.00 0.00 3.33
2932 8213 4.675671 GCACACTCTAGGCTACTACACAAG 60.676 50.000 0.00 0.00 0.00 3.16
2933 8214 3.444388 ACACTCTAGGCTACTACACAAGC 59.556 47.826 0.00 0.00 38.03 4.01
2934 8215 3.444034 CACTCTAGGCTACTACACAAGCA 59.556 47.826 0.00 0.00 40.61 3.91
2935 8216 3.444388 ACTCTAGGCTACTACACAAGCAC 59.556 47.826 0.00 0.00 40.61 4.40
2936 8217 3.427573 TCTAGGCTACTACACAAGCACA 58.572 45.455 0.00 0.00 40.61 4.57
2937 8218 2.457366 AGGCTACTACACAAGCACAC 57.543 50.000 0.00 0.00 40.61 3.82
2938 8219 1.691976 AGGCTACTACACAAGCACACA 59.308 47.619 0.00 0.00 40.61 3.72
2939 8220 2.069273 GGCTACTACACAAGCACACAG 58.931 52.381 0.00 0.00 40.61 3.66
2940 8221 2.069273 GCTACTACACAAGCACACAGG 58.931 52.381 0.00 0.00 38.63 4.00
2941 8222 2.548067 GCTACTACACAAGCACACAGGT 60.548 50.000 0.00 0.00 38.63 4.00
2942 8223 3.305813 GCTACTACACAAGCACACAGGTA 60.306 47.826 0.00 0.00 38.63 3.08
2943 8224 3.107642 ACTACACAAGCACACAGGTAC 57.892 47.619 0.00 0.00 0.00 3.34
2944 8225 2.224209 ACTACACAAGCACACAGGTACC 60.224 50.000 2.73 2.73 0.00 3.34
2945 8226 0.179029 ACACAAGCACACAGGTACCC 60.179 55.000 8.74 0.00 0.00 3.69
2946 8227 0.889186 CACAAGCACACAGGTACCCC 60.889 60.000 8.74 0.00 0.00 4.95
2947 8228 1.303317 CAAGCACACAGGTACCCCC 60.303 63.158 8.74 0.00 0.00 5.40
2949 8230 1.065997 AAGCACACAGGTACCCCCTT 61.066 55.000 8.74 0.00 42.73 3.95
2950 8231 1.303317 GCACACAGGTACCCCCTTG 60.303 63.158 8.74 2.40 42.73 3.61
2951 8232 1.303317 CACACAGGTACCCCCTTGC 60.303 63.158 8.74 0.00 42.73 4.01
2952 8233 2.355115 CACAGGTACCCCCTTGCC 59.645 66.667 8.74 0.00 42.73 4.52
2953 8234 2.121689 ACAGGTACCCCCTTGCCA 60.122 61.111 8.74 0.00 42.73 4.92
2954 8235 2.355115 CAGGTACCCCCTTGCCAC 59.645 66.667 8.74 0.00 42.73 5.01
2955 8236 3.327404 AGGTACCCCCTTGCCACG 61.327 66.667 8.74 0.00 42.73 4.94
2956 8237 4.419921 GGTACCCCCTTGCCACGG 62.420 72.222 0.00 0.00 0.00 4.94
2957 8238 3.324108 GTACCCCCTTGCCACGGA 61.324 66.667 0.00 0.00 0.00 4.69
2958 8239 3.324108 TACCCCCTTGCCACGGAC 61.324 66.667 0.00 0.00 0.00 4.79
2964 8245 4.308458 CTTGCCACGGACCCGACA 62.308 66.667 16.07 7.39 42.83 4.35
2965 8246 4.612412 TTGCCACGGACCCGACAC 62.612 66.667 16.07 4.16 42.83 3.67
2999 8280 4.705519 GGCGCATGCACACACACC 62.706 66.667 19.57 3.01 45.35 4.16
3000 8281 4.705519 GCGCATGCACACACACCC 62.706 66.667 19.57 0.00 42.15 4.61
3001 8282 4.388080 CGCATGCACACACACCCG 62.388 66.667 19.57 0.00 0.00 5.28
3002 8283 2.977456 GCATGCACACACACCCGA 60.977 61.111 14.21 0.00 0.00 5.14
3003 8284 2.945984 CATGCACACACACCCGAC 59.054 61.111 0.00 0.00 0.00 4.79
3004 8285 2.664851 ATGCACACACACCCGACG 60.665 61.111 0.00 0.00 0.00 5.12
3020 8301 2.735478 CGCGGTTGTCGTGGCTTA 60.735 61.111 0.00 0.00 44.78 3.09
3021 8302 2.098233 CGCGGTTGTCGTGGCTTAT 61.098 57.895 0.00 0.00 44.78 1.73
3022 8303 1.632046 CGCGGTTGTCGTGGCTTATT 61.632 55.000 0.00 0.00 44.78 1.40
3023 8304 0.179200 GCGGTTGTCGTGGCTTATTG 60.179 55.000 0.00 0.00 41.72 1.90
3024 8305 0.446222 CGGTTGTCGTGGCTTATTGG 59.554 55.000 0.00 0.00 0.00 3.16
3025 8306 0.170339 GGTTGTCGTGGCTTATTGGC 59.830 55.000 0.00 0.00 42.18 4.52
3036 8317 3.503827 GCTTATTGGCCAACACTAACC 57.496 47.619 23.27 3.59 0.00 2.85
3037 8318 2.165641 GCTTATTGGCCAACACTAACCC 59.834 50.000 23.27 4.17 0.00 4.11
3038 8319 2.517998 TATTGGCCAACACTAACCCC 57.482 50.000 23.27 0.00 0.00 4.95
3039 8320 0.252057 ATTGGCCAACACTAACCCCC 60.252 55.000 23.27 0.00 0.00 5.40
3040 8321 1.365105 TTGGCCAACACTAACCCCCT 61.365 55.000 16.05 0.00 0.00 4.79
3041 8322 0.476023 TGGCCAACACTAACCCCCTA 60.476 55.000 0.61 0.00 0.00 3.53
3042 8323 0.699981 GGCCAACACTAACCCCCTAA 59.300 55.000 0.00 0.00 0.00 2.69
3043 8324 1.340697 GGCCAACACTAACCCCCTAAG 60.341 57.143 0.00 0.00 0.00 2.18
3044 8325 1.953785 GCCAACACTAACCCCCTAAGC 60.954 57.143 0.00 0.00 0.00 3.09
3045 8326 1.340697 CCAACACTAACCCCCTAAGCC 60.341 57.143 0.00 0.00 0.00 4.35
3046 8327 1.353022 CAACACTAACCCCCTAAGCCA 59.647 52.381 0.00 0.00 0.00 4.75
3047 8328 0.989602 ACACTAACCCCCTAAGCCAC 59.010 55.000 0.00 0.00 0.00 5.01
3048 8329 0.988832 CACTAACCCCCTAAGCCACA 59.011 55.000 0.00 0.00 0.00 4.17
3049 8330 1.065418 CACTAACCCCCTAAGCCACAG 60.065 57.143 0.00 0.00 0.00 3.66
3050 8331 0.107165 CTAACCCCCTAAGCCACAGC 60.107 60.000 0.00 0.00 40.32 4.40
3051 8332 1.568118 TAACCCCCTAAGCCACAGCC 61.568 60.000 0.00 0.00 41.25 4.85
3052 8333 3.017581 CCCCCTAAGCCACAGCCT 61.018 66.667 0.00 0.00 41.25 4.58
3053 8334 1.692749 CCCCCTAAGCCACAGCCTA 60.693 63.158 0.00 0.00 41.25 3.93
3054 8335 1.700042 CCCCCTAAGCCACAGCCTAG 61.700 65.000 0.00 0.00 41.25 3.02
3055 8336 0.691078 CCCCTAAGCCACAGCCTAGA 60.691 60.000 0.00 0.00 41.25 2.43
3056 8337 0.755686 CCCTAAGCCACAGCCTAGAG 59.244 60.000 0.00 0.00 41.25 2.43
3057 8338 0.755686 CCTAAGCCACAGCCTAGAGG 59.244 60.000 0.00 0.00 41.25 3.69
3058 8339 1.689575 CCTAAGCCACAGCCTAGAGGA 60.690 57.143 0.00 0.00 41.25 3.71
3059 8340 1.686052 CTAAGCCACAGCCTAGAGGAG 59.314 57.143 0.00 0.00 41.25 3.69
3060 8341 0.252467 AAGCCACAGCCTAGAGGAGT 60.252 55.000 0.00 0.00 41.25 3.85
3061 8342 0.975040 AGCCACAGCCTAGAGGAGTG 60.975 60.000 12.27 12.27 41.25 3.51
3062 8343 1.261238 GCCACAGCCTAGAGGAGTGT 61.261 60.000 15.95 8.76 39.53 3.55
3063 8344 1.270907 CCACAGCCTAGAGGAGTGTT 58.729 55.000 15.95 0.00 39.53 3.32
3064 8345 1.066573 CCACAGCCTAGAGGAGTGTTG 60.067 57.143 15.95 5.11 39.53 3.33
3065 8346 1.895798 CACAGCCTAGAGGAGTGTTGA 59.104 52.381 0.00 0.00 37.71 3.18
3066 8347 1.896465 ACAGCCTAGAGGAGTGTTGAC 59.104 52.381 0.00 0.00 37.39 3.18
3067 8348 1.205893 CAGCCTAGAGGAGTGTTGACC 59.794 57.143 0.00 0.00 37.39 4.02
3068 8349 0.537653 GCCTAGAGGAGTGTTGACCC 59.462 60.000 0.00 0.00 37.39 4.46
3069 8350 1.897647 GCCTAGAGGAGTGTTGACCCT 60.898 57.143 0.00 0.00 37.39 4.34
3070 8351 2.541466 CCTAGAGGAGTGTTGACCCTT 58.459 52.381 0.00 0.00 37.39 3.95
3071 8352 2.907042 CCTAGAGGAGTGTTGACCCTTT 59.093 50.000 0.00 0.00 37.39 3.11
3072 8353 2.938956 AGAGGAGTGTTGACCCTTTG 57.061 50.000 0.00 0.00 0.00 2.77
3073 8354 2.408565 AGAGGAGTGTTGACCCTTTGA 58.591 47.619 0.00 0.00 0.00 2.69
3074 8355 2.982488 AGAGGAGTGTTGACCCTTTGAT 59.018 45.455 0.00 0.00 0.00 2.57
3075 8356 3.077359 GAGGAGTGTTGACCCTTTGATG 58.923 50.000 0.00 0.00 0.00 3.07
3076 8357 2.443255 AGGAGTGTTGACCCTTTGATGT 59.557 45.455 0.00 0.00 0.00 3.06
3077 8358 2.814336 GGAGTGTTGACCCTTTGATGTC 59.186 50.000 0.00 0.00 0.00 3.06
3078 8359 2.480419 GAGTGTTGACCCTTTGATGTCG 59.520 50.000 0.00 0.00 34.18 4.35
3079 8360 2.104111 AGTGTTGACCCTTTGATGTCGA 59.896 45.455 0.00 0.00 34.18 4.20
3080 8361 2.223377 GTGTTGACCCTTTGATGTCGAC 59.777 50.000 9.11 9.11 43.31 4.20
3081 8362 1.459592 GTTGACCCTTTGATGTCGACG 59.540 52.381 11.62 0.00 36.46 5.12
3082 8363 0.677288 TGACCCTTTGATGTCGACGT 59.323 50.000 10.75 10.75 34.18 4.34
3083 8364 1.336517 TGACCCTTTGATGTCGACGTC 60.337 52.381 27.30 27.30 34.18 4.34
3084 8365 0.388134 ACCCTTTGATGTCGACGTCG 60.388 55.000 31.30 31.30 41.45 5.12
3085 8366 1.076533 CCCTTTGATGTCGACGTCGG 61.077 60.000 35.05 22.74 40.29 4.79
3086 8367 1.683790 CCTTTGATGTCGACGTCGGC 61.684 60.000 33.98 33.98 45.40 5.54
3092 8373 4.517703 GTCGACGTCGGCGAGGAG 62.518 72.222 35.05 24.55 42.00 3.69
3094 8375 4.813526 CGACGTCGGCGAGGAGTG 62.814 72.222 32.97 18.46 42.00 3.51
3105 8386 2.753029 AGGAGTGCCTGTTCAGCC 59.247 61.111 0.00 0.00 44.90 4.85
3106 8387 2.743928 GGAGTGCCTGTTCAGCCG 60.744 66.667 0.00 0.00 0.00 5.52
3107 8388 3.426568 GAGTGCCTGTTCAGCCGC 61.427 66.667 0.00 0.00 0.00 6.53
3128 8409 4.083862 GCCCTTCCTCGGCTTCGT 62.084 66.667 0.00 0.00 43.48 3.85
3129 8410 2.125512 CCCTTCCTCGGCTTCGTG 60.126 66.667 0.00 0.00 35.06 4.35
3130 8411 2.815647 CCTTCCTCGGCTTCGTGC 60.816 66.667 0.00 0.00 41.94 5.34
3131 8412 2.048222 CTTCCTCGGCTTCGTGCA 60.048 61.111 5.65 0.00 45.15 4.57
3132 8413 2.048222 TTCCTCGGCTTCGTGCAG 60.048 61.111 0.00 1.99 45.15 4.41
3133 8414 2.771763 CTTCCTCGGCTTCGTGCAGT 62.772 60.000 0.00 0.00 45.15 4.40
3134 8415 2.357517 CCTCGGCTTCGTGCAGTT 60.358 61.111 0.00 0.00 45.15 3.16
3135 8416 2.383527 CCTCGGCTTCGTGCAGTTC 61.384 63.158 0.00 0.00 45.15 3.01
3136 8417 2.357034 TCGGCTTCGTGCAGTTCC 60.357 61.111 0.00 0.00 45.15 3.62
3137 8418 3.777925 CGGCTTCGTGCAGTTCCG 61.778 66.667 0.00 0.00 45.15 4.30
3138 8419 4.090057 GGCTTCGTGCAGTTCCGC 62.090 66.667 0.00 0.00 45.15 5.54
3139 8420 3.044305 GCTTCGTGCAGTTCCGCT 61.044 61.111 0.00 0.00 42.31 5.52
3140 8421 2.607892 GCTTCGTGCAGTTCCGCTT 61.608 57.895 0.00 0.00 42.31 4.68
3141 8422 1.205064 CTTCGTGCAGTTCCGCTTG 59.795 57.895 0.00 0.00 0.00 4.01
3142 8423 1.221466 CTTCGTGCAGTTCCGCTTGA 61.221 55.000 0.00 0.00 0.00 3.02
3143 8424 0.812014 TTCGTGCAGTTCCGCTTGAA 60.812 50.000 0.00 0.00 0.00 2.69
3144 8425 0.812014 TCGTGCAGTTCCGCTTGAAA 60.812 50.000 0.00 0.00 33.94 2.69
3145 8426 0.238289 CGTGCAGTTCCGCTTGAAAT 59.762 50.000 0.00 0.00 33.94 2.17
3147 8428 0.597568 TGCAGTTCCGCTTGAAATGG 59.402 50.000 12.97 0.00 46.47 3.16
3148 8429 0.733909 GCAGTTCCGCTTGAAATGGC 60.734 55.000 12.97 4.58 46.47 4.40
3149 8430 0.454957 CAGTTCCGCTTGAAATGGCG 60.455 55.000 5.65 0.00 43.54 5.69
3153 8434 4.101790 CGCTTGAAATGGCGGCGT 62.102 61.111 9.37 0.00 46.42 5.68
3154 8435 2.258286 GCTTGAAATGGCGGCGTT 59.742 55.556 11.16 11.16 0.00 4.84
3155 8436 2.088178 GCTTGAAATGGCGGCGTTG 61.088 57.895 18.01 5.91 0.00 4.10
3156 8437 2.049618 TTGAAATGGCGGCGTTGC 60.050 55.556 18.01 16.40 0.00 4.17
3169 8450 3.454941 CGTTGCCCGCAATTATAGC 57.545 52.632 5.25 0.00 38.28 2.97
3170 8451 0.660488 CGTTGCCCGCAATTATAGCA 59.340 50.000 5.25 0.00 38.28 3.49
3171 8452 1.334059 CGTTGCCCGCAATTATAGCAG 60.334 52.381 5.25 0.00 38.28 4.24
3172 8453 0.667993 TTGCCCGCAATTATAGCAGC 59.332 50.000 0.00 0.00 34.45 5.25
3178 8459 0.110644 GCAATTATAGCAGCGACCGC 60.111 55.000 6.25 6.25 42.33 5.68
3179 8460 1.217001 CAATTATAGCAGCGACCGCA 58.783 50.000 16.97 0.00 44.88 5.69
3180 8461 1.800586 CAATTATAGCAGCGACCGCAT 59.199 47.619 16.97 3.87 44.88 4.73
3181 8462 2.169832 ATTATAGCAGCGACCGCATT 57.830 45.000 16.97 4.12 44.88 3.56
3182 8463 1.217001 TTATAGCAGCGACCGCATTG 58.783 50.000 16.97 8.11 44.88 2.82
3183 8464 0.104120 TATAGCAGCGACCGCATTGT 59.896 50.000 16.97 2.81 44.88 2.71
3184 8465 0.744414 ATAGCAGCGACCGCATTGTT 60.744 50.000 16.97 7.58 44.88 2.83
3185 8466 0.953471 TAGCAGCGACCGCATTGTTT 60.953 50.000 16.97 3.35 44.88 2.83
3186 8467 1.797537 GCAGCGACCGCATTGTTTC 60.798 57.895 16.97 0.00 44.88 2.78
3187 8468 1.154225 CAGCGACCGCATTGTTTCC 60.154 57.895 16.97 0.00 44.88 3.13
3188 8469 2.178273 GCGACCGCATTGTTTCCC 59.822 61.111 9.73 0.00 41.49 3.97
3189 8470 2.332654 GCGACCGCATTGTTTCCCT 61.333 57.895 9.73 0.00 41.49 4.20
3190 8471 1.794222 CGACCGCATTGTTTCCCTC 59.206 57.895 0.00 0.00 0.00 4.30
3191 8472 1.644786 CGACCGCATTGTTTCCCTCC 61.645 60.000 0.00 0.00 0.00 4.30
3192 8473 1.644786 GACCGCATTGTTTCCCTCCG 61.645 60.000 0.00 0.00 0.00 4.63
3193 8474 2.485122 CGCATTGTTTCCCTCCGC 59.515 61.111 0.00 0.00 0.00 5.54
3194 8475 2.885113 GCATTGTTTCCCTCCGCC 59.115 61.111 0.00 0.00 0.00 6.13
3195 8476 3.051392 GCATTGTTTCCCTCCGCCG 62.051 63.158 0.00 0.00 0.00 6.46
3196 8477 2.750237 ATTGTTTCCCTCCGCCGC 60.750 61.111 0.00 0.00 0.00 6.53
3213 8494 3.443045 CCCAATGCCGTGCTGGTC 61.443 66.667 0.00 0.00 41.21 4.02
3214 8495 3.803082 CCAATGCCGTGCTGGTCG 61.803 66.667 0.00 0.00 41.21 4.79
3215 8496 4.465512 CAATGCCGTGCTGGTCGC 62.466 66.667 0.00 0.00 41.21 5.19
3225 8506 4.873129 CTGGTCGCCCCGTCATCG 62.873 72.222 0.00 0.00 35.15 3.84
3227 8508 4.867599 GGTCGCCCCGTCATCGTC 62.868 72.222 0.00 0.00 35.01 4.20
3232 8513 3.755628 CCCCGTCATCGTCGTGGT 61.756 66.667 0.00 0.00 35.01 4.16
3233 8514 2.202570 CCCGTCATCGTCGTGGTC 60.203 66.667 0.00 0.00 35.01 4.02
3234 8515 2.576053 CCGTCATCGTCGTGGTCG 60.576 66.667 0.00 0.00 38.55 4.79
3235 8516 2.175078 CGTCATCGTCGTGGTCGT 59.825 61.111 0.00 0.00 38.33 4.34
3236 8517 1.441515 CGTCATCGTCGTGGTCGTT 60.442 57.895 0.00 0.00 38.33 3.85
3237 8518 1.661948 CGTCATCGTCGTGGTCGTTG 61.662 60.000 0.00 0.00 38.33 4.10
3238 8519 0.386352 GTCATCGTCGTGGTCGTTGA 60.386 55.000 0.00 0.00 38.33 3.18
3239 8520 0.311477 TCATCGTCGTGGTCGTTGAA 59.689 50.000 0.00 0.00 35.22 2.69
3240 8521 0.708370 CATCGTCGTGGTCGTTGAAG 59.292 55.000 0.00 0.00 38.33 3.02
3241 8522 1.007336 ATCGTCGTGGTCGTTGAAGC 61.007 55.000 0.00 0.00 38.33 3.86
3242 8523 2.654912 CGTCGTGGTCGTTGAAGCC 61.655 63.158 0.00 0.00 38.33 4.35
3243 8524 2.355363 TCGTGGTCGTTGAAGCCG 60.355 61.111 0.00 0.00 38.33 5.52
3244 8525 4.072088 CGTGGTCGTTGAAGCCGC 62.072 66.667 0.00 0.00 0.00 6.53
3245 8526 3.723348 GTGGTCGTTGAAGCCGCC 61.723 66.667 0.00 0.00 0.00 6.13
3267 8548 4.227134 CCCTGCTATCGCCGCTGT 62.227 66.667 0.00 0.00 34.43 4.40
3268 8549 2.963854 CCTGCTATCGCCGCTGTG 60.964 66.667 0.00 0.00 34.43 3.66
3269 8550 3.634072 CTGCTATCGCCGCTGTGC 61.634 66.667 0.00 0.00 34.43 4.57
3290 8571 4.504916 CCTCTGAGCCGCGGTGAG 62.505 72.222 28.70 25.02 0.00 3.51
3350 8631 3.744719 CCGCGTCCACTCCTCGAA 61.745 66.667 4.92 0.00 0.00 3.71
3351 8632 2.202492 CGCGTCCACTCCTCGAAG 60.202 66.667 0.00 0.00 0.00 3.79
3352 8633 2.182030 GCGTCCACTCCTCGAAGG 59.818 66.667 0.00 0.00 36.46 3.46
3353 8634 2.341101 GCGTCCACTCCTCGAAGGA 61.341 63.158 3.97 3.97 43.43 3.36
3354 8635 1.507174 CGTCCACTCCTCGAAGGAC 59.493 63.158 0.00 0.00 40.06 3.85
3355 8636 0.961358 CGTCCACTCCTCGAAGGACT 60.961 60.000 14.59 0.44 46.45 3.85
3356 8637 1.258676 GTCCACTCCTCGAAGGACTT 58.741 55.000 11.25 0.00 45.46 3.01
3357 8638 1.202817 GTCCACTCCTCGAAGGACTTC 59.797 57.143 11.25 1.98 45.46 3.01
3358 8639 1.203013 TCCACTCCTCGAAGGACTTCA 60.203 52.381 12.12 0.00 40.06 3.02
3359 8640 1.203523 CCACTCCTCGAAGGACTTCAG 59.796 57.143 12.12 8.20 40.06 3.02
3360 8641 2.163509 CACTCCTCGAAGGACTTCAGA 58.836 52.381 12.12 8.93 40.06 3.27
3361 8642 2.757868 CACTCCTCGAAGGACTTCAGAT 59.242 50.000 12.12 0.00 40.06 2.90
3362 8643 2.757868 ACTCCTCGAAGGACTTCAGATG 59.242 50.000 12.12 7.52 40.06 2.90
3363 8644 2.100584 CTCCTCGAAGGACTTCAGATGG 59.899 54.545 12.12 11.63 40.06 3.51
3364 8645 1.472376 CCTCGAAGGACTTCAGATGGC 60.472 57.143 12.12 0.00 37.67 4.40
3365 8646 0.537188 TCGAAGGACTTCAGATGGCC 59.463 55.000 12.12 0.00 39.46 5.36
3366 8647 0.807667 CGAAGGACTTCAGATGGCCG 60.808 60.000 12.12 0.00 39.46 6.13
3367 8648 0.537188 GAAGGACTTCAGATGGCCGA 59.463 55.000 7.17 0.00 39.31 5.54
3368 8649 0.539051 AAGGACTTCAGATGGCCGAG 59.461 55.000 2.44 0.00 0.00 4.63
3369 8650 0.616111 AGGACTTCAGATGGCCGAGT 60.616 55.000 2.44 0.00 0.00 4.18
3370 8651 0.460987 GGACTTCAGATGGCCGAGTG 60.461 60.000 0.00 0.00 0.00 3.51
3371 8652 1.078848 ACTTCAGATGGCCGAGTGC 60.079 57.895 0.00 0.00 40.16 4.40
3380 8661 2.347490 GCCGAGTGCCTCCTTGAA 59.653 61.111 0.00 0.00 0.00 2.69
3381 8662 1.743252 GCCGAGTGCCTCCTTGAAG 60.743 63.158 0.00 0.00 0.00 3.02
3382 8663 1.975327 CCGAGTGCCTCCTTGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
3383 8664 0.108424 CCGAGTGCCTCCTTGAAGAG 60.108 60.000 0.00 0.00 0.00 2.85
3384 8665 0.739112 CGAGTGCCTCCTTGAAGAGC 60.739 60.000 0.00 0.00 32.17 4.09
3385 8666 0.322975 GAGTGCCTCCTTGAAGAGCA 59.677 55.000 0.00 0.00 32.17 4.26
3386 8667 0.990374 AGTGCCTCCTTGAAGAGCAT 59.010 50.000 7.56 0.00 32.17 3.79
3387 8668 1.353694 AGTGCCTCCTTGAAGAGCATT 59.646 47.619 7.56 2.01 32.17 3.56
3388 8669 2.165998 GTGCCTCCTTGAAGAGCATTT 58.834 47.619 7.56 0.00 32.17 2.32
3389 8670 2.163211 GTGCCTCCTTGAAGAGCATTTC 59.837 50.000 7.56 0.00 32.17 2.17
3390 8671 1.747924 GCCTCCTTGAAGAGCATTTCC 59.252 52.381 0.00 0.00 32.17 3.13
3391 8672 2.620108 GCCTCCTTGAAGAGCATTTCCT 60.620 50.000 0.00 0.00 32.17 3.36
3392 8673 3.277715 CCTCCTTGAAGAGCATTTCCTC 58.722 50.000 0.00 0.00 32.17 3.71
3393 8674 2.935201 CTCCTTGAAGAGCATTTCCTCG 59.065 50.000 0.00 0.00 36.95 4.63
3394 8675 2.567169 TCCTTGAAGAGCATTTCCTCGA 59.433 45.455 0.00 0.00 36.95 4.04
3395 8676 2.675348 CCTTGAAGAGCATTTCCTCGAC 59.325 50.000 0.00 0.00 36.95 4.20
3396 8677 1.996292 TGAAGAGCATTTCCTCGACG 58.004 50.000 0.00 0.00 36.95 5.12
3397 8678 1.272490 TGAAGAGCATTTCCTCGACGT 59.728 47.619 0.00 0.00 36.95 4.34
3398 8679 2.288825 TGAAGAGCATTTCCTCGACGTT 60.289 45.455 0.00 0.00 36.95 3.99
3399 8680 1.714794 AGAGCATTTCCTCGACGTTG 58.285 50.000 0.00 0.00 36.95 4.10
3400 8681 0.095417 GAGCATTTCCTCGACGTTGC 59.905 55.000 0.00 0.00 0.00 4.17
3401 8682 0.602638 AGCATTTCCTCGACGTTGCA 60.603 50.000 7.28 0.00 32.66 4.08
3402 8683 0.179215 GCATTTCCTCGACGTTGCAG 60.179 55.000 0.00 0.00 0.00 4.41
3403 8684 1.428448 CATTTCCTCGACGTTGCAGA 58.572 50.000 0.00 0.00 0.00 4.26
3404 8685 1.798223 CATTTCCTCGACGTTGCAGAA 59.202 47.619 0.00 0.56 0.00 3.02
3405 8686 1.214367 TTTCCTCGACGTTGCAGAAC 58.786 50.000 0.00 0.00 0.00 3.01
3406 8687 0.387929 TTCCTCGACGTTGCAGAACT 59.612 50.000 0.00 0.00 0.00 3.01
3407 8688 0.318699 TCCTCGACGTTGCAGAACTG 60.319 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
299 729 1.305201 CCAAGTGTTGCCAAGTACGT 58.695 50.000 0.00 0.00 0.00 3.57
331 761 6.599356 AAATAAACCCGGCAAAAGTAAGAT 57.401 33.333 0.00 0.00 0.00 2.40
390 824 9.492973 CAAAATTGAGTCATTTATTTTGGGACT 57.507 29.630 22.69 0.00 41.13 3.85
439 873 8.762426 CCTAAAGTAAGTGACTCAACTTTGTAC 58.238 37.037 24.59 7.28 41.11 2.90
488 922 1.527380 TTCTTTTCCGCGGGCACTT 60.527 52.632 27.83 0.00 0.00 3.16
640 1080 9.520204 AATCCATTGAATTATGTGAATTTCGAC 57.480 29.630 0.00 0.00 0.00 4.20
729 1170 2.012937 TCGGTCCGCGTCAAAATATT 57.987 45.000 6.34 0.00 0.00 1.28
742 1183 1.746470 AATTCCGGTGATTTCGGTCC 58.254 50.000 0.00 0.00 46.82 4.46
766 1207 9.282569 CATAGGGATCAAAATTTCAACCAAAAA 57.717 29.630 0.00 0.00 0.00 1.94
785 1226 5.099378 TCTAGCTAGCTAGTACCATAGGGA 58.901 45.833 38.27 20.66 44.59 4.20
869 1340 0.809385 TCGGTCTCGGTCAAGTCATC 59.191 55.000 0.00 0.00 36.95 2.92
870 1341 0.811915 CTCGGTCTCGGTCAAGTCAT 59.188 55.000 0.00 0.00 36.95 3.06
871 1342 0.250597 TCTCGGTCTCGGTCAAGTCA 60.251 55.000 0.00 0.00 36.95 3.41
887 1555 0.458669 TTAGGGTTGCGATCGGTCTC 59.541 55.000 18.30 0.00 0.00 3.36
909 1577 1.138036 CGACAGGTTGCCATGCATG 59.862 57.895 20.19 20.19 38.76 4.06
911 1579 1.672030 CTCGACAGGTTGCCATGCA 60.672 57.895 0.00 0.00 36.47 3.96
929 1597 3.170585 GTCTACGTCGTGGCGTGC 61.171 66.667 10.12 0.00 45.33 5.34
932 1600 2.944662 CTAGCGTCTACGTCGTGGCG 62.945 65.000 8.47 13.71 42.22 5.69
991 1663 0.107945 AAGGCGCTCATGTTCTCTCC 60.108 55.000 7.64 0.00 0.00 3.71
1157 1829 0.736672 TCGACGGACGAGAGAGTCAG 60.737 60.000 0.00 0.00 46.45 3.51
1329 2001 3.373226 GTGTAGGGCACGGTCTCA 58.627 61.111 0.00 0.00 38.45 3.27
1773 2469 2.763249 GGTACGTACATACCTCGTGG 57.237 55.000 26.02 0.99 41.38 4.94
1868 2594 7.118101 ACAAGCAAAATTACACAATATGCCAAG 59.882 33.333 0.00 0.00 37.62 3.61
1876 2602 6.423604 GCAACCTACAAGCAAAATTACACAAT 59.576 34.615 0.00 0.00 0.00 2.71
2029 2755 2.347490 TCGTGAGAAAGGCAGGCC 59.653 61.111 0.97 0.97 37.03 5.19
2526 3288 4.159857 GCCTAACTGCTCGTATAATCTCG 58.840 47.826 0.00 0.00 0.00 4.04
2575 7851 6.408869 TCCAGACCATGTATATATGTGCATG 58.591 40.000 19.21 19.21 38.61 4.06
2577 7853 6.625532 ATCCAGACCATGTATATATGTGCA 57.374 37.500 8.46 0.00 0.00 4.57
2606 7882 6.183360 ACAGAGGTTGTGCAAAATTACATTCA 60.183 34.615 0.00 0.00 38.99 2.57
2662 7938 5.297278 CGATGTAGTAGGAGTAGGATATGGC 59.703 48.000 0.00 0.00 0.00 4.40
2826 8107 3.814615 ATGGGCGTGATAGCTGCGG 62.815 63.158 0.00 0.00 37.29 5.69
2827 8108 2.280389 ATGGGCGTGATAGCTGCG 60.280 61.111 0.00 0.00 37.29 5.18
2828 8109 0.948141 GAGATGGGCGTGATAGCTGC 60.948 60.000 0.00 0.00 37.29 5.25
2829 8110 0.665670 CGAGATGGGCGTGATAGCTG 60.666 60.000 0.00 0.00 37.29 4.24
2830 8111 1.662608 CGAGATGGGCGTGATAGCT 59.337 57.895 0.00 0.00 37.29 3.32
2831 8112 2.024319 GCGAGATGGGCGTGATAGC 61.024 63.158 0.00 0.00 0.00 2.97
2832 8113 4.251760 GCGAGATGGGCGTGATAG 57.748 61.111 0.00 0.00 0.00 2.08
2845 8126 2.100631 GTGGTTGTGGGATCGCGAG 61.101 63.158 16.66 0.00 0.00 5.03
2846 8127 2.047655 GTGGTTGTGGGATCGCGA 60.048 61.111 13.09 13.09 0.00 5.87
2847 8128 3.124921 GGTGGTTGTGGGATCGCG 61.125 66.667 0.00 0.00 0.00 5.87
2848 8129 2.040544 CAGGTGGTTGTGGGATCGC 61.041 63.158 2.14 2.14 0.00 4.58
2849 8130 0.673644 GTCAGGTGGTTGTGGGATCG 60.674 60.000 0.00 0.00 0.00 3.69
2850 8131 0.322546 GGTCAGGTGGTTGTGGGATC 60.323 60.000 0.00 0.00 0.00 3.36
2851 8132 0.772124 AGGTCAGGTGGTTGTGGGAT 60.772 55.000 0.00 0.00 0.00 3.85
2852 8133 0.104882 TAGGTCAGGTGGTTGTGGGA 60.105 55.000 0.00 0.00 0.00 4.37
2853 8134 0.768622 TTAGGTCAGGTGGTTGTGGG 59.231 55.000 0.00 0.00 0.00 4.61
2854 8135 2.227194 GTTTAGGTCAGGTGGTTGTGG 58.773 52.381 0.00 0.00 0.00 4.17
2855 8136 2.158667 AGGTTTAGGTCAGGTGGTTGTG 60.159 50.000 0.00 0.00 0.00 3.33
2856 8137 2.132686 AGGTTTAGGTCAGGTGGTTGT 58.867 47.619 0.00 0.00 0.00 3.32
2857 8138 2.951229 AGGTTTAGGTCAGGTGGTTG 57.049 50.000 0.00 0.00 0.00 3.77
2858 8139 2.301009 CGTAGGTTTAGGTCAGGTGGTT 59.699 50.000 0.00 0.00 0.00 3.67
2859 8140 1.897802 CGTAGGTTTAGGTCAGGTGGT 59.102 52.381 0.00 0.00 0.00 4.16
2860 8141 1.405121 GCGTAGGTTTAGGTCAGGTGG 60.405 57.143 0.00 0.00 0.00 4.61
2861 8142 1.274167 TGCGTAGGTTTAGGTCAGGTG 59.726 52.381 0.00 0.00 0.00 4.00
2862 8143 1.274447 GTGCGTAGGTTTAGGTCAGGT 59.726 52.381 0.00 0.00 0.00 4.00
2863 8144 1.734707 CGTGCGTAGGTTTAGGTCAGG 60.735 57.143 0.00 0.00 0.00 3.86
2864 8145 1.625616 CGTGCGTAGGTTTAGGTCAG 58.374 55.000 0.00 0.00 0.00 3.51
2865 8146 0.388907 GCGTGCGTAGGTTTAGGTCA 60.389 55.000 0.00 0.00 0.00 4.02
2866 8147 1.080435 GGCGTGCGTAGGTTTAGGTC 61.080 60.000 0.00 0.00 0.00 3.85
2867 8148 1.079612 GGCGTGCGTAGGTTTAGGT 60.080 57.895 0.00 0.00 0.00 3.08
2868 8149 1.812507 GGGCGTGCGTAGGTTTAGG 60.813 63.158 0.00 0.00 0.00 2.69
2869 8150 2.162754 CGGGCGTGCGTAGGTTTAG 61.163 63.158 0.00 0.00 0.00 1.85
2870 8151 2.125991 CGGGCGTGCGTAGGTTTA 60.126 61.111 0.00 0.00 0.00 2.01
2884 8165 4.866224 TGTGTGTGCACCACCGGG 62.866 66.667 25.77 0.00 44.65 5.73
2885 8166 3.582120 GTGTGTGTGCACCACCGG 61.582 66.667 25.77 0.00 44.65 5.28
2886 8167 2.821810 TGTGTGTGTGCACCACCG 60.822 61.111 25.77 0.00 44.65 4.94
2887 8168 1.383456 ATGTGTGTGTGTGCACCACC 61.383 55.000 25.77 19.62 44.65 4.61
2888 8169 1.002900 GTATGTGTGTGTGTGCACCAC 60.003 52.381 23.54 23.54 44.65 4.16
2889 8170 1.304254 GTATGTGTGTGTGTGCACCA 58.696 50.000 15.69 9.21 44.65 4.17
2890 8171 0.234625 CGTATGTGTGTGTGTGCACC 59.765 55.000 15.69 6.37 44.65 5.01
2891 8172 0.384230 GCGTATGTGTGTGTGTGCAC 60.384 55.000 10.75 10.75 45.44 4.57
2892 8173 0.811616 TGCGTATGTGTGTGTGTGCA 60.812 50.000 0.00 0.00 0.00 4.57
2893 8174 0.384230 GTGCGTATGTGTGTGTGTGC 60.384 55.000 0.00 0.00 0.00 4.57
2894 8175 0.933796 TGTGCGTATGTGTGTGTGTG 59.066 50.000 0.00 0.00 0.00 3.82
2895 8176 0.934496 GTGTGCGTATGTGTGTGTGT 59.066 50.000 0.00 0.00 0.00 3.72
2896 8177 1.192312 GAGTGTGCGTATGTGTGTGTG 59.808 52.381 0.00 0.00 0.00 3.82
2897 8178 1.068588 AGAGTGTGCGTATGTGTGTGT 59.931 47.619 0.00 0.00 0.00 3.72
2898 8179 1.783284 AGAGTGTGCGTATGTGTGTG 58.217 50.000 0.00 0.00 0.00 3.82
2899 8180 2.094700 CCTAGAGTGTGCGTATGTGTGT 60.095 50.000 0.00 0.00 0.00 3.72
2900 8181 2.530177 CCTAGAGTGTGCGTATGTGTG 58.470 52.381 0.00 0.00 0.00 3.82
2901 8182 1.135083 GCCTAGAGTGTGCGTATGTGT 60.135 52.381 0.00 0.00 0.00 3.72
2902 8183 1.135139 AGCCTAGAGTGTGCGTATGTG 59.865 52.381 0.00 0.00 0.00 3.21
2903 8184 1.475403 AGCCTAGAGTGTGCGTATGT 58.525 50.000 0.00 0.00 0.00 2.29
2904 8185 2.619177 AGTAGCCTAGAGTGTGCGTATG 59.381 50.000 0.00 0.00 0.00 2.39
2905 8186 2.933573 AGTAGCCTAGAGTGTGCGTAT 58.066 47.619 0.00 0.00 0.00 3.06
2906 8187 2.414994 AGTAGCCTAGAGTGTGCGTA 57.585 50.000 0.00 0.00 0.00 4.42
2907 8188 2.015587 GTAGTAGCCTAGAGTGTGCGT 58.984 52.381 0.00 0.00 0.00 5.24
2908 8189 2.014857 TGTAGTAGCCTAGAGTGTGCG 58.985 52.381 0.00 0.00 0.00 5.34
2909 8190 2.753452 TGTGTAGTAGCCTAGAGTGTGC 59.247 50.000 0.00 0.00 0.00 4.57
2910 8191 4.675671 GCTTGTGTAGTAGCCTAGAGTGTG 60.676 50.000 0.00 0.00 0.00 3.82
2911 8192 3.444388 GCTTGTGTAGTAGCCTAGAGTGT 59.556 47.826 0.00 0.00 0.00 3.55
2912 8193 3.444034 TGCTTGTGTAGTAGCCTAGAGTG 59.556 47.826 0.00 0.00 36.56 3.51
2913 8194 3.444388 GTGCTTGTGTAGTAGCCTAGAGT 59.556 47.826 0.00 0.00 36.56 3.24
2914 8195 3.444034 TGTGCTTGTGTAGTAGCCTAGAG 59.556 47.826 0.00 0.00 36.56 2.43
2915 8196 3.192844 GTGTGCTTGTGTAGTAGCCTAGA 59.807 47.826 0.00 0.00 36.56 2.43
2916 8197 3.056821 TGTGTGCTTGTGTAGTAGCCTAG 60.057 47.826 0.00 0.00 36.56 3.02
2917 8198 2.894765 TGTGTGCTTGTGTAGTAGCCTA 59.105 45.455 0.00 0.00 36.56 3.93
2918 8199 1.691976 TGTGTGCTTGTGTAGTAGCCT 59.308 47.619 0.00 0.00 36.56 4.58
2919 8200 2.069273 CTGTGTGCTTGTGTAGTAGCC 58.931 52.381 0.00 0.00 36.56 3.93
2920 8201 2.069273 CCTGTGTGCTTGTGTAGTAGC 58.931 52.381 0.00 0.00 37.89 3.58
2921 8202 3.386768 ACCTGTGTGCTTGTGTAGTAG 57.613 47.619 0.00 0.00 0.00 2.57
2922 8203 3.006110 GGTACCTGTGTGCTTGTGTAGTA 59.994 47.826 4.06 0.00 0.00 1.82
2923 8204 2.224209 GGTACCTGTGTGCTTGTGTAGT 60.224 50.000 4.06 0.00 0.00 2.73
2924 8205 2.413837 GGTACCTGTGTGCTTGTGTAG 58.586 52.381 4.06 0.00 0.00 2.74
2925 8206 2.536761 GGTACCTGTGTGCTTGTGTA 57.463 50.000 4.06 0.00 0.00 2.90
2926 8207 3.396951 GGTACCTGTGTGCTTGTGT 57.603 52.632 4.06 0.00 0.00 3.72
2940 8221 3.324108 TCCGTGGCAAGGGGGTAC 61.324 66.667 19.49 0.00 31.87 3.34
2941 8222 3.324108 GTCCGTGGCAAGGGGGTA 61.324 66.667 19.49 0.00 31.87 3.69
2947 8228 4.308458 TGTCGGGTCCGTGGCAAG 62.308 66.667 9.36 0.00 40.74 4.01
2948 8229 4.612412 GTGTCGGGTCCGTGGCAA 62.612 66.667 9.36 0.00 40.74 4.52
2982 8263 4.705519 GGTGTGTGTGCATGCGCC 62.706 66.667 27.42 18.66 37.32 6.53
2983 8264 4.705519 GGGTGTGTGTGCATGCGC 62.706 66.667 24.25 24.25 39.24 6.09
2984 8265 4.388080 CGGGTGTGTGTGCATGCG 62.388 66.667 14.09 0.00 0.00 4.73
2985 8266 2.977456 TCGGGTGTGTGTGCATGC 60.977 61.111 11.82 11.82 0.00 4.06
2986 8267 2.945984 GTCGGGTGTGTGTGCATG 59.054 61.111 0.00 0.00 0.00 4.06
2987 8268 2.664851 CGTCGGGTGTGTGTGCAT 60.665 61.111 0.00 0.00 0.00 3.96
3002 8283 2.775032 ATAAGCCACGACAACCGCGT 62.775 55.000 4.92 0.00 43.67 6.01
3003 8284 1.632046 AATAAGCCACGACAACCGCG 61.632 55.000 0.00 0.00 43.32 6.46
3004 8285 0.179200 CAATAAGCCACGACAACCGC 60.179 55.000 0.00 0.00 43.32 5.68
3005 8286 0.446222 CCAATAAGCCACGACAACCG 59.554 55.000 0.00 0.00 45.44 4.44
3006 8287 0.170339 GCCAATAAGCCACGACAACC 59.830 55.000 0.00 0.00 0.00 3.77
3007 8288 3.694889 GCCAATAAGCCACGACAAC 57.305 52.632 0.00 0.00 0.00 3.32
3016 8297 2.165641 GGGTTAGTGTTGGCCAATAAGC 59.834 50.000 23.66 23.04 46.13 3.09
3017 8298 2.758423 GGGGTTAGTGTTGGCCAATAAG 59.242 50.000 23.66 0.00 34.53 1.73
3018 8299 2.557901 GGGGGTTAGTGTTGGCCAATAA 60.558 50.000 23.66 13.64 31.58 1.40
3019 8300 1.006162 GGGGGTTAGTGTTGGCCAATA 59.994 52.381 23.66 17.49 0.00 1.90
3020 8301 0.252057 GGGGGTTAGTGTTGGCCAAT 60.252 55.000 23.66 8.57 0.00 3.16
3021 8302 1.154221 GGGGGTTAGTGTTGGCCAA 59.846 57.895 16.05 16.05 0.00 4.52
3022 8303 0.476023 TAGGGGGTTAGTGTTGGCCA 60.476 55.000 0.00 0.00 0.00 5.36
3023 8304 0.699981 TTAGGGGGTTAGTGTTGGCC 59.300 55.000 0.00 0.00 0.00 5.36
3024 8305 1.953785 GCTTAGGGGGTTAGTGTTGGC 60.954 57.143 0.00 0.00 0.00 4.52
3025 8306 1.340697 GGCTTAGGGGGTTAGTGTTGG 60.341 57.143 0.00 0.00 0.00 3.77
3026 8307 1.353022 TGGCTTAGGGGGTTAGTGTTG 59.647 52.381 0.00 0.00 0.00 3.33
3027 8308 1.353358 GTGGCTTAGGGGGTTAGTGTT 59.647 52.381 0.00 0.00 0.00 3.32
3028 8309 0.989602 GTGGCTTAGGGGGTTAGTGT 59.010 55.000 0.00 0.00 0.00 3.55
3029 8310 0.988832 TGTGGCTTAGGGGGTTAGTG 59.011 55.000 0.00 0.00 0.00 2.74
3030 8311 1.286248 CTGTGGCTTAGGGGGTTAGT 58.714 55.000 0.00 0.00 0.00 2.24
3031 8312 0.107165 GCTGTGGCTTAGGGGGTTAG 60.107 60.000 0.00 0.00 35.22 2.34
3032 8313 1.568118 GGCTGTGGCTTAGGGGGTTA 61.568 60.000 0.00 0.00 38.73 2.85
3033 8314 2.763902 GCTGTGGCTTAGGGGGTT 59.236 61.111 0.00 0.00 35.22 4.11
3034 8315 2.486410 TAGGCTGTGGCTTAGGGGGT 62.486 60.000 0.00 0.00 39.70 4.95
3035 8316 1.692749 TAGGCTGTGGCTTAGGGGG 60.693 63.158 0.00 0.00 39.70 5.40
3036 8317 0.691078 TCTAGGCTGTGGCTTAGGGG 60.691 60.000 0.00 0.00 44.81 4.79
3037 8318 0.755686 CTCTAGGCTGTGGCTTAGGG 59.244 60.000 0.00 0.77 44.81 3.53
3038 8319 0.755686 CCTCTAGGCTGTGGCTTAGG 59.244 60.000 0.00 3.80 44.81 2.69
3039 8320 1.686052 CTCCTCTAGGCTGTGGCTTAG 59.314 57.143 0.00 0.00 45.68 2.18
3040 8321 1.007238 ACTCCTCTAGGCTGTGGCTTA 59.993 52.381 0.00 0.00 39.70 3.09
3041 8322 0.252467 ACTCCTCTAGGCTGTGGCTT 60.252 55.000 0.00 0.00 39.70 4.35
3042 8323 0.975040 CACTCCTCTAGGCTGTGGCT 60.975 60.000 0.00 0.00 42.39 4.75
3043 8324 1.261238 ACACTCCTCTAGGCTGTGGC 61.261 60.000 19.06 0.00 40.78 5.01
3044 8325 1.066573 CAACACTCCTCTAGGCTGTGG 60.067 57.143 19.06 0.00 40.78 4.17
3045 8326 1.895798 TCAACACTCCTCTAGGCTGTG 59.104 52.381 15.60 15.60 41.57 3.66
3046 8327 1.896465 GTCAACACTCCTCTAGGCTGT 59.104 52.381 0.00 0.00 34.44 4.40
3047 8328 1.205893 GGTCAACACTCCTCTAGGCTG 59.794 57.143 0.00 0.00 34.44 4.85
3048 8329 1.562783 GGTCAACACTCCTCTAGGCT 58.437 55.000 0.00 0.00 34.44 4.58
3049 8330 0.537653 GGGTCAACACTCCTCTAGGC 59.462 60.000 0.00 0.00 34.44 3.93
3050 8331 2.239681 AGGGTCAACACTCCTCTAGG 57.760 55.000 0.00 0.00 0.00 3.02
3051 8332 3.578716 TCAAAGGGTCAACACTCCTCTAG 59.421 47.826 0.00 0.00 0.00 2.43
3052 8333 3.583228 TCAAAGGGTCAACACTCCTCTA 58.417 45.455 0.00 0.00 0.00 2.43
3053 8334 2.408565 TCAAAGGGTCAACACTCCTCT 58.591 47.619 0.00 0.00 0.00 3.69
3054 8335 2.930826 TCAAAGGGTCAACACTCCTC 57.069 50.000 0.00 0.00 0.00 3.71
3055 8336 2.443255 ACATCAAAGGGTCAACACTCCT 59.557 45.455 0.00 0.00 0.00 3.69
3056 8337 2.814336 GACATCAAAGGGTCAACACTCC 59.186 50.000 0.00 0.00 34.22 3.85
3057 8338 2.480419 CGACATCAAAGGGTCAACACTC 59.520 50.000 0.00 0.00 33.66 3.51
3058 8339 2.104111 TCGACATCAAAGGGTCAACACT 59.896 45.455 0.00 0.00 33.66 3.55
3059 8340 2.223377 GTCGACATCAAAGGGTCAACAC 59.777 50.000 11.55 0.00 33.66 3.32
3060 8341 2.489971 GTCGACATCAAAGGGTCAACA 58.510 47.619 11.55 0.00 33.66 3.33
3061 8342 1.459592 CGTCGACATCAAAGGGTCAAC 59.540 52.381 17.16 0.00 33.66 3.18
3062 8343 1.069513 ACGTCGACATCAAAGGGTCAA 59.930 47.619 17.16 0.00 33.66 3.18
3063 8344 0.677288 ACGTCGACATCAAAGGGTCA 59.323 50.000 17.16 0.00 33.66 4.02
3064 8345 1.347320 GACGTCGACATCAAAGGGTC 58.653 55.000 17.16 8.20 0.00 4.46
3065 8346 0.388134 CGACGTCGACATCAAAGGGT 60.388 55.000 33.35 1.97 43.02 4.34
3066 8347 1.076533 CCGACGTCGACATCAAAGGG 61.077 60.000 37.65 13.95 43.02 3.95
3067 8348 1.683790 GCCGACGTCGACATCAAAGG 61.684 60.000 37.65 18.79 43.02 3.11
3068 8349 1.702299 GCCGACGTCGACATCAAAG 59.298 57.895 37.65 19.51 43.02 2.77
3069 8350 2.084101 CGCCGACGTCGACATCAAA 61.084 57.895 37.65 0.00 43.02 2.69
3070 8351 2.503158 CGCCGACGTCGACATCAA 60.503 61.111 37.65 0.00 43.02 2.57
3071 8352 3.376914 CTCGCCGACGTCGACATCA 62.377 63.158 37.65 15.76 43.02 3.07
3072 8353 2.648102 CTCGCCGACGTCGACATC 60.648 66.667 37.65 21.17 43.02 3.06
3073 8354 4.175489 CCTCGCCGACGTCGACAT 62.175 66.667 37.65 0.00 43.02 3.06
3075 8356 4.517703 CTCCTCGCCGACGTCGAC 62.518 72.222 37.65 26.87 43.02 4.20
3077 8358 4.813526 CACTCCTCGCCGACGTCG 62.814 72.222 30.33 30.33 41.18 5.12
3085 8366 1.739562 CTGAACAGGCACTCCTCGC 60.740 63.158 0.00 0.00 41.93 5.03
3086 8367 1.739562 GCTGAACAGGCACTCCTCG 60.740 63.158 3.99 0.00 41.93 4.63
3087 8368 4.292784 GCTGAACAGGCACTCCTC 57.707 61.111 3.99 0.00 41.93 3.71
3112 8393 2.125512 CACGAAGCCGAGGAAGGG 60.126 66.667 0.00 0.00 39.50 3.95
3113 8394 2.815647 GCACGAAGCCGAGGAAGG 60.816 66.667 0.00 0.00 39.50 3.46
3114 8395 2.048222 TGCACGAAGCCGAGGAAG 60.048 61.111 0.00 0.00 44.83 3.46
3115 8396 2.048222 CTGCACGAAGCCGAGGAA 60.048 61.111 0.00 0.00 44.83 3.36
3116 8397 2.765250 GAACTGCACGAAGCCGAGGA 62.765 60.000 0.00 0.00 44.83 3.71
3117 8398 2.357517 AACTGCACGAAGCCGAGG 60.358 61.111 0.00 0.00 44.83 4.63
3118 8399 2.383527 GGAACTGCACGAAGCCGAG 61.384 63.158 0.00 0.00 44.83 4.63
3119 8400 2.357034 GGAACTGCACGAAGCCGA 60.357 61.111 0.00 0.00 44.83 5.54
3120 8401 3.777925 CGGAACTGCACGAAGCCG 61.778 66.667 0.00 0.00 44.83 5.52
3121 8402 4.090057 GCGGAACTGCACGAAGCC 62.090 66.667 0.00 0.00 44.83 4.35
3122 8403 2.607892 AAGCGGAACTGCACGAAGC 61.608 57.895 8.34 0.00 45.96 3.86
3123 8404 1.205064 CAAGCGGAACTGCACGAAG 59.795 57.895 8.34 0.00 37.31 3.79
3124 8405 0.812014 TTCAAGCGGAACTGCACGAA 60.812 50.000 8.34 6.95 37.31 3.85
3125 8406 0.812014 TTTCAAGCGGAACTGCACGA 60.812 50.000 8.34 1.22 34.56 4.35
3126 8407 0.238289 ATTTCAAGCGGAACTGCACG 59.762 50.000 8.34 0.00 34.56 5.34
3127 8408 1.666888 CCATTTCAAGCGGAACTGCAC 60.667 52.381 8.34 0.00 35.47 4.57
3128 8409 0.597568 CCATTTCAAGCGGAACTGCA 59.402 50.000 8.34 0.00 35.47 4.41
3129 8410 0.733909 GCCATTTCAAGCGGAACTGC 60.734 55.000 0.00 0.00 35.47 4.40
3130 8411 3.406682 GCCATTTCAAGCGGAACTG 57.593 52.632 5.07 5.07 36.29 3.16
3137 8418 2.088178 CAACGCCGCCATTTCAAGC 61.088 57.895 0.00 0.00 0.00 4.01
3138 8419 2.088178 GCAACGCCGCCATTTCAAG 61.088 57.895 0.00 0.00 0.00 3.02
3139 8420 2.049618 GCAACGCCGCCATTTCAA 60.050 55.556 0.00 0.00 0.00 2.69
3152 8433 1.600413 GCTGCTATAATTGCGGGCAAC 60.600 52.381 8.44 0.00 38.88 4.17
3153 8434 0.667993 GCTGCTATAATTGCGGGCAA 59.332 50.000 8.72 8.72 40.47 4.52
3154 8435 1.506309 CGCTGCTATAATTGCGGGCA 61.506 55.000 0.00 0.00 43.97 5.36
3155 8436 1.207593 CGCTGCTATAATTGCGGGC 59.792 57.895 0.00 0.00 43.97 6.13
3159 8440 0.110644 GCGGTCGCTGCTATAATTGC 60.111 55.000 8.20 0.00 38.26 3.56
3160 8441 1.217001 TGCGGTCGCTGCTATAATTG 58.783 50.000 16.36 0.00 42.51 2.32
3161 8442 2.169832 ATGCGGTCGCTGCTATAATT 57.830 45.000 16.36 0.00 42.51 1.40
3162 8443 1.800586 CAATGCGGTCGCTGCTATAAT 59.199 47.619 16.36 0.00 42.51 1.28
3163 8444 1.217001 CAATGCGGTCGCTGCTATAA 58.783 50.000 16.36 0.00 42.51 0.98
3164 8445 0.104120 ACAATGCGGTCGCTGCTATA 59.896 50.000 16.36 0.00 42.51 1.31
3165 8446 0.744414 AACAATGCGGTCGCTGCTAT 60.744 50.000 16.36 0.00 42.51 2.97
3166 8447 0.953471 AAACAATGCGGTCGCTGCTA 60.953 50.000 16.36 0.00 42.51 3.49
3167 8448 2.187599 GAAACAATGCGGTCGCTGCT 62.188 55.000 16.36 0.00 42.51 4.24
3168 8449 1.797537 GAAACAATGCGGTCGCTGC 60.798 57.895 16.36 1.41 42.51 5.25
3169 8450 1.154225 GGAAACAATGCGGTCGCTG 60.154 57.895 16.36 9.62 42.51 5.18
3170 8451 2.332654 GGGAAACAATGCGGTCGCT 61.333 57.895 16.36 0.00 42.51 4.93
3171 8452 2.178273 GGGAAACAATGCGGTCGC 59.822 61.111 8.54 8.54 42.35 5.19
3172 8453 1.644786 GGAGGGAAACAATGCGGTCG 61.645 60.000 0.00 0.00 0.00 4.79
3173 8454 1.644786 CGGAGGGAAACAATGCGGTC 61.645 60.000 0.00 0.00 0.00 4.79
3174 8455 1.674322 CGGAGGGAAACAATGCGGT 60.674 57.895 0.00 0.00 0.00 5.68
3175 8456 3.051392 GCGGAGGGAAACAATGCGG 62.051 63.158 0.00 0.00 33.94 5.69
3176 8457 2.485122 GCGGAGGGAAACAATGCG 59.515 61.111 0.00 0.00 35.90 4.73
3177 8458 2.885113 GGCGGAGGGAAACAATGC 59.115 61.111 0.00 0.00 0.00 3.56
3178 8459 3.051392 GCGGCGGAGGGAAACAATG 62.051 63.158 9.78 0.00 0.00 2.82
3179 8460 2.750237 GCGGCGGAGGGAAACAAT 60.750 61.111 9.78 0.00 0.00 2.71
3196 8477 3.443045 GACCAGCACGGCATTGGG 61.443 66.667 8.36 0.00 39.03 4.12
3197 8478 3.803082 CGACCAGCACGGCATTGG 61.803 66.667 0.00 1.53 39.03 3.16
3216 8497 2.202570 GACCACGACGATGACGGG 60.203 66.667 0.00 0.00 44.46 5.28
3217 8498 2.576053 CGACCACGACGATGACGG 60.576 66.667 0.00 0.00 44.46 4.79
3218 8499 1.441515 AACGACCACGACGATGACG 60.442 57.895 0.00 6.77 42.66 4.35
3219 8500 0.386352 TCAACGACCACGACGATGAC 60.386 55.000 0.00 0.00 42.66 3.06
3220 8501 0.311477 TTCAACGACCACGACGATGA 59.689 50.000 0.00 0.00 42.66 2.92
3221 8502 0.708370 CTTCAACGACCACGACGATG 59.292 55.000 0.00 0.00 42.66 3.84
3222 8503 1.007336 GCTTCAACGACCACGACGAT 61.007 55.000 0.00 0.00 42.66 3.73
3223 8504 1.659335 GCTTCAACGACCACGACGA 60.659 57.895 0.00 0.00 42.66 4.20
3224 8505 2.654912 GGCTTCAACGACCACGACG 61.655 63.158 0.00 0.00 42.66 5.12
3225 8506 2.654912 CGGCTTCAACGACCACGAC 61.655 63.158 0.00 0.00 42.66 4.34
3226 8507 2.355363 CGGCTTCAACGACCACGA 60.355 61.111 0.00 0.00 42.66 4.35
3227 8508 4.072088 GCGGCTTCAACGACCACG 62.072 66.667 0.00 0.00 45.75 4.94
3228 8509 3.723348 GGCGGCTTCAACGACCAC 61.723 66.667 0.00 0.00 31.94 4.16
3273 8554 4.504916 CTCACCGCGGCTCAGAGG 62.505 72.222 28.58 6.21 37.11 3.69
3276 8557 4.827087 ATGCTCACCGCGGCTCAG 62.827 66.667 28.58 19.45 43.27 3.35
3278 8559 4.819761 TCATGCTCACCGCGGCTC 62.820 66.667 28.58 12.42 43.27 4.70
3279 8560 4.827087 CTCATGCTCACCGCGGCT 62.827 66.667 28.58 10.12 43.27 5.52
3333 8614 3.685214 CTTCGAGGAGTGGACGCGG 62.685 68.421 12.47 0.00 0.00 6.46
3334 8615 2.202492 CTTCGAGGAGTGGACGCG 60.202 66.667 3.53 3.53 0.00 6.01
3335 8616 2.182030 CCTTCGAGGAGTGGACGC 59.818 66.667 0.00 0.00 37.67 5.19
3336 8617 0.961358 AGTCCTTCGAGGAGTGGACG 60.961 60.000 9.59 0.00 46.90 4.79
3337 8618 2.964343 AGTCCTTCGAGGAGTGGAC 58.036 57.895 9.59 11.16 46.90 4.02
3342 8623 2.100584 CCATCTGAAGTCCTTCGAGGAG 59.899 54.545 0.00 0.00 46.90 3.69
3343 8624 2.103373 CCATCTGAAGTCCTTCGAGGA 58.897 52.381 0.00 0.00 43.43 3.71
3344 8625 1.472376 GCCATCTGAAGTCCTTCGAGG 60.472 57.143 2.82 5.05 42.28 4.63
3345 8626 1.472376 GGCCATCTGAAGTCCTTCGAG 60.472 57.143 0.00 2.44 42.28 4.04
3346 8627 0.537188 GGCCATCTGAAGTCCTTCGA 59.463 55.000 0.00 3.94 42.28 3.71
3347 8628 0.807667 CGGCCATCTGAAGTCCTTCG 60.808 60.000 2.24 0.00 42.28 3.79
3348 8629 0.537188 TCGGCCATCTGAAGTCCTTC 59.463 55.000 2.24 0.00 39.91 3.46
3349 8630 0.539051 CTCGGCCATCTGAAGTCCTT 59.461 55.000 2.24 0.00 0.00 3.36
3350 8631 0.616111 ACTCGGCCATCTGAAGTCCT 60.616 55.000 2.24 0.00 0.00 3.85
3351 8632 0.460987 CACTCGGCCATCTGAAGTCC 60.461 60.000 2.24 0.00 0.00 3.85
3352 8633 1.086634 GCACTCGGCCATCTGAAGTC 61.087 60.000 2.24 0.00 36.11 3.01
3353 8634 1.078848 GCACTCGGCCATCTGAAGT 60.079 57.895 2.24 0.00 36.11 3.01
3354 8635 3.805267 GCACTCGGCCATCTGAAG 58.195 61.111 2.24 0.00 36.11 3.02
3368 8649 1.831580 AATGCTCTTCAAGGAGGCAC 58.168 50.000 3.45 0.00 34.21 5.01
3369 8650 2.440409 GAAATGCTCTTCAAGGAGGCA 58.560 47.619 3.79 3.79 34.21 4.75
3370 8651 1.747924 GGAAATGCTCTTCAAGGAGGC 59.252 52.381 0.00 0.00 34.21 4.70
3371 8652 3.277715 GAGGAAATGCTCTTCAAGGAGG 58.722 50.000 0.00 0.00 34.21 4.30
3372 8653 2.935201 CGAGGAAATGCTCTTCAAGGAG 59.065 50.000 0.43 0.00 36.50 3.69
3373 8654 2.567169 TCGAGGAAATGCTCTTCAAGGA 59.433 45.455 0.43 0.00 30.50 3.36
3374 8655 2.675348 GTCGAGGAAATGCTCTTCAAGG 59.325 50.000 0.43 0.00 30.50 3.61
3375 8656 2.346847 CGTCGAGGAAATGCTCTTCAAG 59.653 50.000 0.00 0.00 30.50 3.02
3376 8657 2.288825 ACGTCGAGGAAATGCTCTTCAA 60.289 45.455 12.85 0.00 30.50 2.69
3377 8658 1.272490 ACGTCGAGGAAATGCTCTTCA 59.728 47.619 12.85 0.00 30.50 3.02
3378 8659 1.997669 ACGTCGAGGAAATGCTCTTC 58.002 50.000 12.85 0.00 0.00 2.87
3379 8660 2.069273 CAACGTCGAGGAAATGCTCTT 58.931 47.619 12.85 0.00 0.00 2.85
3380 8661 1.714794 CAACGTCGAGGAAATGCTCT 58.285 50.000 12.85 0.00 0.00 4.09
3381 8662 0.095417 GCAACGTCGAGGAAATGCTC 59.905 55.000 12.85 0.00 0.00 4.26
3382 8663 0.602638 TGCAACGTCGAGGAAATGCT 60.603 50.000 24.03 0.00 34.97 3.79
3383 8664 0.179215 CTGCAACGTCGAGGAAATGC 60.179 55.000 12.85 17.55 0.00 3.56
3384 8665 1.428448 TCTGCAACGTCGAGGAAATG 58.572 50.000 12.85 8.74 0.00 2.32
3385 8666 1.798813 GTTCTGCAACGTCGAGGAAAT 59.201 47.619 12.85 0.00 0.00 2.17
3386 8667 1.202486 AGTTCTGCAACGTCGAGGAAA 60.202 47.619 12.85 0.00 37.61 3.13
3387 8668 0.387929 AGTTCTGCAACGTCGAGGAA 59.612 50.000 12.85 0.00 37.61 3.36
3388 8669 0.318699 CAGTTCTGCAACGTCGAGGA 60.319 55.000 12.85 0.00 37.61 3.71
3389 8670 1.891060 GCAGTTCTGCAACGTCGAGG 61.891 60.000 18.26 3.03 37.61 4.63
3390 8671 0.941463 AGCAGTTCTGCAACGTCGAG 60.941 55.000 23.69 0.00 37.61 4.04
3391 8672 0.939577 GAGCAGTTCTGCAACGTCGA 60.940 55.000 23.69 0.00 37.61 4.20
3392 8673 1.488957 GAGCAGTTCTGCAACGTCG 59.511 57.895 23.69 0.00 37.61 5.12
3393 8674 0.939577 TCGAGCAGTTCTGCAACGTC 60.940 55.000 27.26 17.00 37.61 4.34
3394 8675 0.319900 ATCGAGCAGTTCTGCAACGT 60.320 50.000 27.26 18.73 37.61 3.99
3395 8676 2.449548 ATCGAGCAGTTCTGCAACG 58.550 52.632 23.69 24.43 37.61 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.