Multiple sequence alignment - TraesCS6D01G385600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G385600 chr6D 100.000 4234 0 0 1 4234 463550433 463546200 0.000000e+00 7819.0
1 TraesCS6D01G385600 chr6D 88.079 713 64 12 2790 3492 463617969 463618670 0.000000e+00 826.0
2 TraesCS6D01G385600 chr6D 73.731 335 64 16 3734 4050 455678508 455678180 4.480000e-20 110.0
3 TraesCS6D01G385600 chr6D 89.552 67 7 0 3734 3800 463630137 463630203 7.540000e-13 86.1
4 TraesCS6D01G385600 chr6A 90.444 2093 108 41 230 2277 610203057 610205102 0.000000e+00 2673.0
5 TraesCS6D01G385600 chr6A 86.858 1461 107 33 2137 3571 610205176 610206577 0.000000e+00 1555.0
6 TraesCS6D01G385600 chr6A 90.111 718 42 10 3485 4187 610190116 610189413 0.000000e+00 905.0
7 TraesCS6D01G385600 chr6A 83.983 231 21 7 1 230 610202785 610203000 1.540000e-49 207.0
8 TraesCS6D01G385600 chr6A 75.893 336 55 16 3734 4050 610249072 610249400 9.480000e-32 148.0
9 TraesCS6D01G385600 chr6A 94.340 53 3 0 3749 3801 602564649 602564597 9.760000e-12 82.4
10 TraesCS6D01G385600 chr6B 88.054 2235 125 75 1 2186 706909973 706912114 0.000000e+00 2518.0
11 TraesCS6D01G385600 chr6B 87.431 1456 100 30 2149 3571 706912109 706913514 0.000000e+00 1598.0
12 TraesCS6D01G385600 chr6B 91.395 767 45 8 3478 4234 706900337 706899582 0.000000e+00 1031.0
13 TraesCS6D01G385600 chr6B 93.558 652 32 3 3584 4234 706913577 706914219 0.000000e+00 963.0
14 TraesCS6D01G385600 chr6B 86.038 265 18 12 3268 3528 706915845 706916094 2.510000e-67 267.0
15 TraesCS6D01G385600 chr6B 89.655 145 14 1 2012 2156 77474790 77474647 2.600000e-42 183.0
16 TraesCS6D01G385600 chr6B 79.426 209 37 5 3734 3939 706965918 706966123 4.410000e-30 143.0
17 TraesCS6D01G385600 chr6B 77.885 208 44 2 3734 3940 693029071 693028865 1.240000e-25 128.0
18 TraesCS6D01G385600 chr6B 91.566 83 7 0 3584 3666 706935451 706935533 9.620000e-22 115.0
19 TraesCS6D01G385600 chr6B 97.436 39 1 0 3157 3195 706915738 706915776 2.730000e-07 67.6
20 TraesCS6D01G385600 chr4D 85.917 774 86 6 2373 3126 59467972 59468742 0.000000e+00 804.0
21 TraesCS6D01G385600 chr4D 80.753 717 126 8 1022 1732 477508635 477507925 2.230000e-152 549.0
22 TraesCS6D01G385600 chr4D 90.909 132 10 2 2047 2178 59467629 59467758 4.350000e-40 176.0
23 TraesCS6D01G385600 chr4D 82.738 168 25 4 2961 3126 504330522 504330687 3.410000e-31 147.0
24 TraesCS6D01G385600 chr4A 80.614 717 127 8 1022 1732 684271332 684270622 1.040000e-150 544.0
25 TraesCS6D01G385600 chr1A 82.764 615 100 6 1022 1633 243162849 243162238 1.040000e-150 544.0
26 TraesCS6D01G385600 chr1D 82.602 615 101 6 1022 1633 194927317 194926706 4.820000e-149 538.0
27 TraesCS6D01G385600 chr1B 83.390 584 91 6 1022 1602 270792753 270793333 1.730000e-148 536.0
28 TraesCS6D01G385600 chr4B 82.718 596 99 4 1022 1615 602450577 602449984 1.040000e-145 527.0
29 TraesCS6D01G385600 chr4B 83.929 168 23 4 2961 3126 650962539 650962704 1.580000e-34 158.0
30 TraesCS6D01G385600 chr5A 82.404 574 93 7 1043 1612 688973657 688974226 1.060000e-135 494.0
31 TraesCS6D01G385600 chr5A 86.982 169 18 3 2001 2165 310018902 310019070 2.010000e-43 187.0
32 TraesCS6D01G385600 chr5B 89.677 155 16 0 2001 2155 533556327 533556481 9.290000e-47 198.0
33 TraesCS6D01G385600 chr5D 86.875 160 21 0 2006 2165 61862233 61862392 3.360000e-41 180.0
34 TraesCS6D01G385600 chr3A 84.906 159 24 0 2961 3119 626647451 626647609 1.220000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G385600 chr6D 463546200 463550433 4233 True 7819.000000 7819 100.0000 1 4234 1 chr6D.!!$R2 4233
1 TraesCS6D01G385600 chr6D 463617969 463618670 701 False 826.000000 826 88.0790 2790 3492 1 chr6D.!!$F1 702
2 TraesCS6D01G385600 chr6A 610202785 610206577 3792 False 1478.333333 2673 87.0950 1 3571 3 chr6A.!!$F2 3570
3 TraesCS6D01G385600 chr6A 610189413 610190116 703 True 905.000000 905 90.1110 3485 4187 1 chr6A.!!$R2 702
4 TraesCS6D01G385600 chr6B 706909973 706916094 6121 False 1082.720000 2518 90.5034 1 4234 5 chr6B.!!$F3 4233
5 TraesCS6D01G385600 chr6B 706899582 706900337 755 True 1031.000000 1031 91.3950 3478 4234 1 chr6B.!!$R3 756
6 TraesCS6D01G385600 chr4D 477507925 477508635 710 True 549.000000 549 80.7530 1022 1732 1 chr4D.!!$R1 710
7 TraesCS6D01G385600 chr4D 59467629 59468742 1113 False 490.000000 804 88.4130 2047 3126 2 chr4D.!!$F2 1079
8 TraesCS6D01G385600 chr4A 684270622 684271332 710 True 544.000000 544 80.6140 1022 1732 1 chr4A.!!$R1 710
9 TraesCS6D01G385600 chr1A 243162238 243162849 611 True 544.000000 544 82.7640 1022 1633 1 chr1A.!!$R1 611
10 TraesCS6D01G385600 chr1D 194926706 194927317 611 True 538.000000 538 82.6020 1022 1633 1 chr1D.!!$R1 611
11 TraesCS6D01G385600 chr1B 270792753 270793333 580 False 536.000000 536 83.3900 1022 1602 1 chr1B.!!$F1 580
12 TraesCS6D01G385600 chr4B 602449984 602450577 593 True 527.000000 527 82.7180 1022 1615 1 chr4B.!!$R1 593
13 TraesCS6D01G385600 chr5A 688973657 688974226 569 False 494.000000 494 82.4040 1043 1612 1 chr5A.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 340 0.034089 ACCTCCATGGCTTAACTGGC 60.034 55.0 6.96 0.0 40.22 4.85 F
649 734 0.036010 CCTCAGCGTGTTCTTGGGAT 60.036 55.0 0.00 0.0 0.00 3.85 F
2187 2334 0.040958 GAACCAACAGCTTGTCTGCG 60.041 55.0 0.00 0.0 46.76 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1869 1.295746 GGGGAGAACAGAACCGTCC 59.704 63.158 0.0 0.0 0.00 4.79 R
2633 3028 1.547372 GAAATGGCAGTGGAGCATGTT 59.453 47.619 0.0 0.0 35.83 2.71 R
3614 4109 0.535335 ATGGGCTGCATTGAGCTTTG 59.465 50.000 0.5 0.0 45.94 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.512485 TGTCAATTTTGTGCCAGCAG 57.488 45.000 0.00 0.00 0.00 4.24
21 22 2.429971 TGTCAATTTTGTGCCAGCAGAA 59.570 40.909 0.00 0.00 0.00 3.02
23 24 2.036217 TCAATTTTGTGCCAGCAGAAGG 59.964 45.455 2.30 0.00 30.92 3.46
35 36 0.603975 GCAGAAGGCGAAAGTGACCT 60.604 55.000 0.00 0.00 34.45 3.85
72 73 5.762179 AATCATTCTCTACCACCAAGTCA 57.238 39.130 0.00 0.00 0.00 3.41
96 97 3.565902 AGAGCAAGTCTTTTTGTACCAGC 59.434 43.478 0.00 0.00 27.07 4.85
119 120 7.922811 CAGCATAAATAATTTTTCACCTCTCCC 59.077 37.037 0.00 0.00 0.00 4.30
125 126 7.709149 ATAATTTTTCACCTCTCCCTTTCAG 57.291 36.000 0.00 0.00 0.00 3.02
145 146 3.404978 CACCATTGCACCATTCACG 57.595 52.632 0.00 0.00 0.00 4.35
146 147 0.733566 CACCATTGCACCATTCACGC 60.734 55.000 0.00 0.00 0.00 5.34
172 173 5.665916 ATCAAAATCAAACCCCAGTGATC 57.334 39.130 0.00 0.00 33.31 2.92
176 177 4.320546 AATCAAACCCCAGTGATCATCA 57.679 40.909 0.00 0.00 33.31 3.07
189 190 7.419518 CCCAGTGATCATCATAGTTTAAGGAGT 60.420 40.741 0.00 0.00 0.00 3.85
195 196 8.738645 ATCATCATAGTTTAAGGAGTGAAACC 57.261 34.615 0.00 0.00 37.80 3.27
197 198 8.160765 TCATCATAGTTTAAGGAGTGAAACCAA 58.839 33.333 0.00 0.00 37.80 3.67
198 199 7.979444 TCATAGTTTAAGGAGTGAAACCAAG 57.021 36.000 0.00 0.00 37.80 3.61
200 201 8.215050 TCATAGTTTAAGGAGTGAAACCAAGAA 58.785 33.333 0.00 0.00 37.80 2.52
201 202 6.694877 AGTTTAAGGAGTGAAACCAAGAAC 57.305 37.500 0.00 0.00 37.80 3.01
221 222 8.392612 CAAGAACAAAAAGAGTGATGCAAAAAT 58.607 29.630 0.00 0.00 0.00 1.82
255 313 1.291184 GGCGCCACAAAAATCCAAGC 61.291 55.000 24.80 0.00 0.00 4.01
258 316 0.396060 GCCACAAAAATCCAAGCCCA 59.604 50.000 0.00 0.00 0.00 5.36
274 332 2.304056 CCAGTCCACCTCCATGGCT 61.304 63.158 6.96 0.00 39.85 4.75
275 333 1.687612 CAGTCCACCTCCATGGCTT 59.312 57.895 6.96 0.00 39.85 4.35
277 335 1.281867 CAGTCCACCTCCATGGCTTAA 59.718 52.381 6.96 0.00 39.85 1.85
278 336 1.282157 AGTCCACCTCCATGGCTTAAC 59.718 52.381 6.96 0.29 39.85 2.01
279 337 1.282157 GTCCACCTCCATGGCTTAACT 59.718 52.381 6.96 0.00 39.85 2.24
280 338 1.281867 TCCACCTCCATGGCTTAACTG 59.718 52.381 6.96 0.00 39.85 3.16
281 339 1.683011 CCACCTCCATGGCTTAACTGG 60.683 57.143 6.96 1.71 40.22 4.00
282 340 0.034089 ACCTCCATGGCTTAACTGGC 60.034 55.000 6.96 0.00 40.22 4.85
284 342 1.616725 CCTCCATGGCTTAACTGGCAA 60.617 52.381 6.96 0.00 45.43 4.52
285 343 1.474077 CTCCATGGCTTAACTGGCAAC 59.526 52.381 6.96 0.00 45.43 4.17
298 356 1.981256 TGGCAACAGTTTCTCCCTTC 58.019 50.000 0.00 0.00 46.17 3.46
300 358 2.155279 GGCAACAGTTTCTCCCTTCTC 58.845 52.381 0.00 0.00 0.00 2.87
301 359 2.155279 GCAACAGTTTCTCCCTTCTCC 58.845 52.381 0.00 0.00 0.00 3.71
302 360 2.784347 CAACAGTTTCTCCCTTCTCCC 58.216 52.381 0.00 0.00 0.00 4.30
304 362 3.562108 ACAGTTTCTCCCTTCTCCCTA 57.438 47.619 0.00 0.00 0.00 3.53
305 363 3.870559 ACAGTTTCTCCCTTCTCCCTAA 58.129 45.455 0.00 0.00 0.00 2.69
306 364 4.439860 ACAGTTTCTCCCTTCTCCCTAAT 58.560 43.478 0.00 0.00 0.00 1.73
307 365 4.471747 ACAGTTTCTCCCTTCTCCCTAATC 59.528 45.833 0.00 0.00 0.00 1.75
308 366 4.471386 CAGTTTCTCCCTTCTCCCTAATCA 59.529 45.833 0.00 0.00 0.00 2.57
309 367 5.131809 CAGTTTCTCCCTTCTCCCTAATCAT 59.868 44.000 0.00 0.00 0.00 2.45
310 368 6.327626 CAGTTTCTCCCTTCTCCCTAATCATA 59.672 42.308 0.00 0.00 0.00 2.15
311 369 6.556874 AGTTTCTCCCTTCTCCCTAATCATAG 59.443 42.308 0.00 0.00 0.00 2.23
312 370 4.421131 TCTCCCTTCTCCCTAATCATAGC 58.579 47.826 0.00 0.00 0.00 2.97
333 391 0.754217 ATGGCCATGCATGTGAGGAC 60.754 55.000 24.58 12.67 0.00 3.85
450 532 0.684479 CATCGACTGGTGGGGAGAGA 60.684 60.000 0.00 0.00 0.00 3.10
455 537 1.920325 CTGGTGGGGAGAGAGGCAA 60.920 63.158 0.00 0.00 0.00 4.52
551 633 5.528870 CCAAGTGTTCCATTGTTAACTTCC 58.471 41.667 7.22 0.00 0.00 3.46
554 636 5.070685 AGTGTTCCATTGTTAACTTCCTCC 58.929 41.667 7.22 0.00 0.00 4.30
559 641 3.558321 CCATTGTTAACTTCCTCCGGTGA 60.558 47.826 4.76 0.00 0.00 4.02
583 668 1.819903 GTAGTTTCTCCACGAGCTCCT 59.180 52.381 8.47 0.00 0.00 3.69
585 670 0.108567 GTTTCTCCACGAGCTCCTCC 60.109 60.000 8.47 0.00 0.00 4.30
586 671 0.251832 TTTCTCCACGAGCTCCTCCT 60.252 55.000 8.47 0.00 0.00 3.69
587 672 0.681564 TTCTCCACGAGCTCCTCCTC 60.682 60.000 8.47 0.00 0.00 3.71
589 674 3.151022 CCACGAGCTCCTCCTCCC 61.151 72.222 8.47 0.00 0.00 4.30
590 675 2.043450 CACGAGCTCCTCCTCCCT 60.043 66.667 8.47 0.00 0.00 4.20
591 676 2.124693 CACGAGCTCCTCCTCCCTC 61.125 68.421 8.47 0.00 0.00 4.30
593 678 3.024217 GAGCTCCTCCTCCCTCCT 58.976 66.667 0.87 0.00 0.00 3.69
594 679 1.152546 GAGCTCCTCCTCCCTCCTC 60.153 68.421 0.87 0.00 0.00 3.71
595 680 2.123033 GCTCCTCCTCCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
596 681 2.710826 GCTCCTCCTCCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
597 682 1.541672 CTCCTCCTCCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
598 683 1.230650 TCCTCCTCCCTCCTCCTCA 60.231 63.158 0.00 0.00 0.00 3.86
599 684 0.631998 TCCTCCTCCCTCCTCCTCAT 60.632 60.000 0.00 0.00 0.00 2.90
601 686 0.539438 CTCCTCCCTCCTCCTCATCG 60.539 65.000 0.00 0.00 0.00 3.84
602 687 1.231641 CCTCCCTCCTCCTCATCGT 59.768 63.158 0.00 0.00 0.00 3.73
604 689 1.152943 TCCCTCCTCCTCATCGTCG 60.153 63.158 0.00 0.00 0.00 5.12
605 690 1.454111 CCCTCCTCCTCATCGTCGT 60.454 63.158 0.00 0.00 0.00 4.34
606 691 1.448922 CCCTCCTCCTCATCGTCGTC 61.449 65.000 0.00 0.00 0.00 4.20
607 692 1.448922 CCTCCTCCTCATCGTCGTCC 61.449 65.000 0.00 0.00 0.00 4.79
608 693 0.464735 CTCCTCCTCATCGTCGTCCT 60.465 60.000 0.00 0.00 0.00 3.85
609 694 0.464013 TCCTCCTCATCGTCGTCCTC 60.464 60.000 0.00 0.00 0.00 3.71
610 695 0.464735 CCTCCTCATCGTCGTCCTCT 60.465 60.000 0.00 0.00 0.00 3.69
616 701 1.095600 CATCGTCGTCCTCTTCCTCA 58.904 55.000 0.00 0.00 0.00 3.86
648 733 1.118965 TCCTCAGCGTGTTCTTGGGA 61.119 55.000 0.00 0.00 0.00 4.37
649 734 0.036010 CCTCAGCGTGTTCTTGGGAT 60.036 55.000 0.00 0.00 0.00 3.85
651 736 0.955428 TCAGCGTGTTCTTGGGATGC 60.955 55.000 0.00 0.00 0.00 3.91
725 816 1.620413 GGTACGTACGTGCTGTTGGC 61.620 60.000 30.65 13.23 42.22 4.52
798 892 1.875576 CGCTTCTTGTCCAGCTCTGTT 60.876 52.381 0.00 0.00 33.52 3.16
837 931 2.833943 TGCAGATCTTAGCTCCTGTTCA 59.166 45.455 6.60 0.00 0.00 3.18
876 978 5.441718 TGCAGATTTCTTTCTAGGTGGAT 57.558 39.130 0.00 0.00 0.00 3.41
897 1003 2.223502 TGATTAGTTAGGTCGCTCGCTG 60.224 50.000 0.00 0.00 0.00 5.18
915 1021 3.678662 GCTGTTCTTGAATCGAATCTGC 58.321 45.455 1.55 0.00 0.00 4.26
921 1032 3.196469 TCTTGAATCGAATCTGCAGGAGT 59.804 43.478 15.13 1.63 0.00 3.85
996 1107 4.010018 CTTGGGGGTGGGGGCAAT 62.010 66.667 0.00 0.00 0.00 3.56
997 1108 2.538225 TTGGGGGTGGGGGCAATA 60.538 61.111 0.00 0.00 0.00 1.90
998 1109 1.943984 TTGGGGGTGGGGGCAATAT 60.944 57.895 0.00 0.00 0.00 1.28
1206 1317 2.844362 CCCATCCTCGGCCTGCTA 60.844 66.667 0.00 0.00 0.00 3.49
1371 1482 2.967076 AACGACACCTGCTGCGTG 60.967 61.111 6.19 6.19 34.31 5.34
1647 1758 2.354305 AAGTGCGTCGACGTGTCC 60.354 61.111 35.48 21.06 42.22 4.02
1648 1759 2.842256 AAGTGCGTCGACGTGTCCT 61.842 57.895 35.48 22.98 42.22 3.85
1649 1760 2.728427 AAGTGCGTCGACGTGTCCTC 62.728 60.000 35.48 20.00 42.22 3.71
1650 1761 4.034258 TGCGTCGACGTGTCCTCC 62.034 66.667 35.48 19.31 42.22 4.30
1651 1762 4.773117 GCGTCGACGTGTCCTCCC 62.773 72.222 35.48 15.22 42.22 4.30
1652 1763 3.359523 CGTCGACGTGTCCTCCCA 61.360 66.667 29.08 0.00 34.11 4.37
1767 1884 1.080025 CCCGGACGGTTCTGTTCTC 60.080 63.158 0.73 0.00 0.00 2.87
1808 1925 2.810887 GCACTGCTCATGCGACGA 60.811 61.111 0.00 0.00 43.34 4.20
1809 1926 3.075998 CACTGCTCATGCGACGAC 58.924 61.111 0.00 0.00 43.34 4.34
1815 1932 4.429212 TCATGCGACGACCCGGTG 62.429 66.667 0.00 0.00 0.00 4.94
1832 1949 4.388499 GAAGCCCGCCTCCGTCAA 62.388 66.667 0.00 0.00 0.00 3.18
1833 1950 4.699522 AAGCCCGCCTCCGTCAAC 62.700 66.667 0.00 0.00 0.00 3.18
1917 2034 0.612174 TGACGACCAAGGAGGAGGAG 60.612 60.000 0.00 0.00 41.22 3.69
1918 2035 1.305381 ACGACCAAGGAGGAGGAGG 60.305 63.158 0.00 0.00 41.22 4.30
1919 2036 1.000486 CGACCAAGGAGGAGGAGGA 60.000 63.158 0.00 0.00 41.22 3.71
1942 2059 1.071605 GTACTGCTGCTTCAACTCGG 58.928 55.000 0.00 0.00 0.00 4.63
2157 2274 2.156098 GTCTCTCTGTCTGTCCGTCTT 58.844 52.381 0.00 0.00 0.00 3.01
2163 2310 3.483421 TCTGTCTGTCCGTCTTCAGTTA 58.517 45.455 0.00 0.00 33.89 2.24
2187 2334 0.040958 GAACCAACAGCTTGTCTGCG 60.041 55.000 0.00 0.00 46.76 5.18
2190 2337 0.877071 CCAACAGCTTGTCTGCGAAT 59.123 50.000 0.00 0.00 46.76 3.34
2219 2576 5.818887 TCATCAGTTCCCATCTTGAATGAA 58.181 37.500 0.00 0.00 0.00 2.57
2220 2577 6.247676 TCATCAGTTCCCATCTTGAATGAAA 58.752 36.000 0.00 0.00 0.00 2.69
2221 2578 5.964958 TCAGTTCCCATCTTGAATGAAAC 57.035 39.130 0.00 0.00 0.00 2.78
2277 2669 3.907894 TTGACCGAATTTTACACCTGC 57.092 42.857 0.00 0.00 0.00 4.85
2297 2689 2.028748 GCTCACAGCAAATTGGATTGGT 60.029 45.455 0.00 0.00 41.89 3.67
2298 2690 3.193267 GCTCACAGCAAATTGGATTGGTA 59.807 43.478 0.00 0.00 41.89 3.25
2307 2699 5.177327 GCAAATTGGATTGGTAAGTGTGTTG 59.823 40.000 0.00 0.00 0.00 3.33
2309 2701 6.478512 AATTGGATTGGTAAGTGTGTTGTT 57.521 33.333 0.00 0.00 0.00 2.83
2310 2702 5.923733 TTGGATTGGTAAGTGTGTTGTTT 57.076 34.783 0.00 0.00 0.00 2.83
2311 2703 5.508200 TGGATTGGTAAGTGTGTTGTTTC 57.492 39.130 0.00 0.00 0.00 2.78
2312 2704 5.197451 TGGATTGGTAAGTGTGTTGTTTCT 58.803 37.500 0.00 0.00 0.00 2.52
2313 2705 5.067153 TGGATTGGTAAGTGTGTTGTTTCTG 59.933 40.000 0.00 0.00 0.00 3.02
2314 2706 5.298276 GGATTGGTAAGTGTGTTGTTTCTGA 59.702 40.000 0.00 0.00 0.00 3.27
2315 2707 6.183360 GGATTGGTAAGTGTGTTGTTTCTGAA 60.183 38.462 0.00 0.00 0.00 3.02
2316 2708 6.576662 TTGGTAAGTGTGTTGTTTCTGAAA 57.423 33.333 0.00 0.00 0.00 2.69
2563 2955 1.043116 TACTCGCCCTGGTCATCCTG 61.043 60.000 0.00 0.00 34.23 3.86
2610 3002 0.893447 CCGACCGGTTAGTTCCTCTT 59.107 55.000 9.42 0.00 0.00 2.85
2611 3003 1.135170 CCGACCGGTTAGTTCCTCTTC 60.135 57.143 9.42 0.00 0.00 2.87
2633 3028 1.643310 CCCCTCCAATTGCCTGAAAA 58.357 50.000 0.00 0.00 0.00 2.29
2642 3037 2.818130 TTGCCTGAAAAACATGCTCC 57.182 45.000 0.00 0.00 40.04 4.70
2662 3057 1.353103 CTGCCATTTCGACGCCATC 59.647 57.895 0.00 0.00 0.00 3.51
2689 3084 9.419297 TGTCGTAATATATGGAAATTAGAGTGC 57.581 33.333 0.00 0.00 0.00 4.40
2778 3194 3.859386 GGCACGATTCATTTTTGGATCAC 59.141 43.478 0.00 0.00 0.00 3.06
2833 3254 0.758734 CAGACTGTCAGGTCCCAACA 59.241 55.000 10.88 0.00 36.95 3.33
2948 3369 1.071228 ACTGACAGACTCTGCATTGCA 59.929 47.619 11.50 11.50 34.37 4.08
2951 3372 2.745821 TGACAGACTCTGCATTGCATTC 59.254 45.455 12.53 9.09 38.13 2.67
2959 3381 3.581755 TCTGCATTGCATTCTTCTTTGC 58.418 40.909 12.53 0.00 38.13 3.68
3273 3698 2.945008 TCAACACAACAGCAGAAGAAGG 59.055 45.455 0.00 0.00 0.00 3.46
3446 3875 4.525100 GGAGGCTTTTTGGGTTGTACATTA 59.475 41.667 0.00 0.00 0.00 1.90
3449 3878 7.404671 AGGCTTTTTGGGTTGTACATTATAG 57.595 36.000 0.00 0.00 0.00 1.31
3479 3908 2.541233 TGAAGAAGGAGGAGGAGGAG 57.459 55.000 0.00 0.00 0.00 3.69
3498 3937 5.032846 AGGAGGAAGATGTACATTCTGGAA 58.967 41.667 10.30 0.00 0.00 3.53
3560 3999 9.998106 AGGTGTATATTTGGTCAGTATTCATAC 57.002 33.333 0.00 0.00 0.00 2.39
3592 4051 3.485346 TTGACCGACCAAGTGGGCC 62.485 63.158 0.00 0.00 41.34 5.80
3614 4109 2.196776 CCCCACATGCCATCCTCC 59.803 66.667 0.00 0.00 0.00 4.30
3617 4112 0.324552 CCCACATGCCATCCTCCAAA 60.325 55.000 0.00 0.00 0.00 3.28
3660 4155 2.291153 ACCTTGGTCCATCTTCACCATG 60.291 50.000 0.00 0.00 42.42 3.66
3661 4156 1.747355 CTTGGTCCATCTTCACCATGC 59.253 52.381 0.00 0.00 42.42 4.06
3662 4157 0.994247 TGGTCCATCTTCACCATGCT 59.006 50.000 0.00 0.00 37.78 3.79
3663 4158 1.355381 TGGTCCATCTTCACCATGCTT 59.645 47.619 0.00 0.00 37.78 3.91
3664 4159 1.747355 GGTCCATCTTCACCATGCTTG 59.253 52.381 0.00 0.00 32.33 4.01
3665 4160 2.440409 GTCCATCTTCACCATGCTTGT 58.560 47.619 0.00 0.00 0.00 3.16
3666 4161 3.609853 GTCCATCTTCACCATGCTTGTA 58.390 45.455 0.00 0.00 0.00 2.41
3667 4162 4.009675 GTCCATCTTCACCATGCTTGTAA 58.990 43.478 0.00 0.00 0.00 2.41
3743 4238 7.290714 ACCATAATGGGAATACGGTAGTTTAGA 59.709 37.037 0.00 0.00 43.37 2.10
3824 4319 4.196971 GCATTCGTACAAGGGTTCCTAAT 58.803 43.478 0.00 0.00 31.13 1.73
4017 4512 1.349026 TCCCAAGAGGACTCAAAGCTG 59.651 52.381 1.75 0.00 40.93 4.24
4033 4528 7.715249 ACTCAAAGCTGTCTACACTTTTGAATA 59.285 33.333 13.74 0.34 35.02 1.75
4079 4574 3.755378 GCATCTTCTTCACTGTGACCATT 59.245 43.478 10.56 0.00 0.00 3.16
4097 4592 4.706476 ACCATTGTCATCAACATTACTGGG 59.294 41.667 0.00 0.00 37.82 4.45
4124 4619 2.825836 GAAGCCACCATCCGCCTG 60.826 66.667 0.00 0.00 0.00 4.85
4150 4645 3.313274 TGTCTTTTGCTTCGTCGTTTC 57.687 42.857 0.00 0.00 0.00 2.78
4159 4654 2.055838 CTTCGTCGTTTCCATCGTTCA 58.944 47.619 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.149148 GTGAGGTCACTTTCGCCTTC 58.851 55.000 2.72 0.00 43.25 3.46
35 36 8.798975 AGAGAATGATTAGGGGTAATTAGTGA 57.201 34.615 0.00 0.00 0.00 3.41
136 137 1.626686 TTTGATTGGGCGTGAATGGT 58.373 45.000 0.00 0.00 0.00 3.55
137 138 2.739885 TTTTGATTGGGCGTGAATGG 57.260 45.000 0.00 0.00 0.00 3.16
138 139 3.847542 TGATTTTGATTGGGCGTGAATG 58.152 40.909 0.00 0.00 0.00 2.67
139 140 4.533919 TTGATTTTGATTGGGCGTGAAT 57.466 36.364 0.00 0.00 0.00 2.57
140 141 4.054671 GTTTGATTTTGATTGGGCGTGAA 58.945 39.130 0.00 0.00 0.00 3.18
141 142 3.553922 GGTTTGATTTTGATTGGGCGTGA 60.554 43.478 0.00 0.00 0.00 4.35
142 143 2.736192 GGTTTGATTTTGATTGGGCGTG 59.264 45.455 0.00 0.00 0.00 5.34
143 144 2.289382 GGGTTTGATTTTGATTGGGCGT 60.289 45.455 0.00 0.00 0.00 5.68
144 145 2.345876 GGGTTTGATTTTGATTGGGCG 58.654 47.619 0.00 0.00 0.00 6.13
145 146 2.039613 TGGGGTTTGATTTTGATTGGGC 59.960 45.455 0.00 0.00 0.00 5.36
146 147 3.327464 ACTGGGGTTTGATTTTGATTGGG 59.673 43.478 0.00 0.00 0.00 4.12
172 173 7.921786 TGGTTTCACTCCTTAAACTATGATG 57.078 36.000 0.00 0.00 36.17 3.07
176 177 7.996644 TGTTCTTGGTTTCACTCCTTAAACTAT 59.003 33.333 0.00 0.00 36.17 2.12
189 190 6.582677 TCACTCTTTTTGTTCTTGGTTTCA 57.417 33.333 0.00 0.00 0.00 2.69
195 196 6.890663 TTTGCATCACTCTTTTTGTTCTTG 57.109 33.333 0.00 0.00 0.00 3.02
197 198 8.392612 CAATTTTTGCATCACTCTTTTTGTTCT 58.607 29.630 0.00 0.00 0.00 3.01
198 199 8.177013 ACAATTTTTGCATCACTCTTTTTGTTC 58.823 29.630 0.00 0.00 0.00 3.18
200 201 7.614124 ACAATTTTTGCATCACTCTTTTTGT 57.386 28.000 0.00 0.00 0.00 2.83
201 202 9.801714 GATACAATTTTTGCATCACTCTTTTTG 57.198 29.630 0.00 0.00 34.31 2.44
221 222 2.171659 TGGCGCCAGGAATAAGATACAA 59.828 45.455 29.03 0.00 0.00 2.41
235 293 0.033228 CTTGGATTTTTGTGGCGCCA 59.967 50.000 29.03 29.03 0.00 5.69
255 313 3.001514 CCATGGAGGTGGACTGGG 58.998 66.667 5.56 0.00 42.02 4.45
258 316 1.282157 GTTAAGCCATGGAGGTGGACT 59.718 52.381 18.40 0.00 42.02 3.85
278 336 1.882623 GAAGGGAGAAACTGTTGCCAG 59.117 52.381 0.00 0.00 44.68 4.85
279 337 1.494721 AGAAGGGAGAAACTGTTGCCA 59.505 47.619 0.00 0.00 0.00 4.92
280 338 2.155279 GAGAAGGGAGAAACTGTTGCC 58.845 52.381 0.00 0.00 0.00 4.52
281 339 2.155279 GGAGAAGGGAGAAACTGTTGC 58.845 52.381 0.00 0.00 0.00 4.17
282 340 2.373502 AGGGAGAAGGGAGAAACTGTTG 59.626 50.000 0.00 0.00 0.00 3.33
284 342 2.424684 AGGGAGAAGGGAGAAACTGT 57.575 50.000 0.00 0.00 0.00 3.55
285 343 4.471386 TGATTAGGGAGAAGGGAGAAACTG 59.529 45.833 0.00 0.00 0.00 3.16
286 344 4.699994 TGATTAGGGAGAAGGGAGAAACT 58.300 43.478 0.00 0.00 0.00 2.66
287 345 5.638530 ATGATTAGGGAGAAGGGAGAAAC 57.361 43.478 0.00 0.00 0.00 2.78
288 346 5.308237 GCTATGATTAGGGAGAAGGGAGAAA 59.692 44.000 0.00 0.00 0.00 2.52
290 348 4.421131 GCTATGATTAGGGAGAAGGGAGA 58.579 47.826 0.00 0.00 0.00 3.71
292 350 3.116356 TGGCTATGATTAGGGAGAAGGGA 60.116 47.826 0.00 0.00 0.00 4.20
293 351 3.251484 TGGCTATGATTAGGGAGAAGGG 58.749 50.000 0.00 0.00 0.00 3.95
295 353 4.841422 CCATGGCTATGATTAGGGAGAAG 58.159 47.826 12.26 0.00 36.36 2.85
296 354 3.009473 GCCATGGCTATGATTAGGGAGAA 59.991 47.826 29.98 0.00 36.36 2.87
297 355 2.573462 GCCATGGCTATGATTAGGGAGA 59.427 50.000 29.98 0.00 36.36 3.71
298 356 2.356535 GGCCATGGCTATGATTAGGGAG 60.357 54.545 34.70 0.00 41.60 4.30
300 358 1.355381 TGGCCATGGCTATGATTAGGG 59.645 52.381 34.70 0.00 41.60 3.53
301 359 2.885135 TGGCCATGGCTATGATTAGG 57.115 50.000 34.70 0.00 41.60 2.69
308 366 0.178944 ACATGCATGGCCATGGCTAT 60.179 50.000 39.72 31.60 45.29 2.97
309 367 1.110518 CACATGCATGGCCATGGCTA 61.111 55.000 39.72 30.78 45.29 3.93
310 368 2.042333 ACATGCATGGCCATGGCT 60.042 55.556 39.72 21.05 45.29 4.75
311 369 2.108157 CACATGCATGGCCATGGC 59.892 61.111 39.72 31.58 45.29 4.40
312 370 1.739667 CTCACATGCATGGCCATGG 59.260 57.895 39.72 27.92 45.29 3.66
402 472 6.211184 TGTCTGCAACCAAATGAGGAAAATAT 59.789 34.615 0.00 0.00 0.00 1.28
450 532 5.047802 CGCCATGGATATTATTTTCTTGCCT 60.048 40.000 18.40 0.00 0.00 4.75
455 537 3.763897 GCCCGCCATGGATATTATTTTCT 59.236 43.478 18.40 0.00 42.00 2.52
551 633 3.576648 GAGAAACTACTTGTCACCGGAG 58.423 50.000 9.46 0.00 0.00 4.63
554 636 3.057734 GTGGAGAAACTACTTGTCACCG 58.942 50.000 0.00 0.00 0.00 4.94
559 641 2.628657 AGCTCGTGGAGAAACTACTTGT 59.371 45.455 0.00 0.00 0.00 3.16
583 668 1.289982 ACGATGAGGAGGAGGGAGGA 61.290 60.000 0.00 0.00 0.00 3.71
585 670 1.169661 CGACGATGAGGAGGAGGGAG 61.170 65.000 0.00 0.00 0.00 4.30
586 671 1.152943 CGACGATGAGGAGGAGGGA 60.153 63.158 0.00 0.00 0.00 4.20
587 672 1.448922 GACGACGATGAGGAGGAGGG 61.449 65.000 0.00 0.00 0.00 4.30
589 674 0.464735 AGGACGACGATGAGGAGGAG 60.465 60.000 0.00 0.00 0.00 3.69
590 675 0.464013 GAGGACGACGATGAGGAGGA 60.464 60.000 0.00 0.00 0.00 3.71
591 676 0.464735 AGAGGACGACGATGAGGAGG 60.465 60.000 0.00 0.00 0.00 4.30
593 678 1.380524 GAAGAGGACGACGATGAGGA 58.619 55.000 0.00 0.00 0.00 3.71
594 679 0.382515 GGAAGAGGACGACGATGAGG 59.617 60.000 0.00 0.00 0.00 3.86
595 680 1.332375 GAGGAAGAGGACGACGATGAG 59.668 57.143 0.00 0.00 0.00 2.90
596 681 1.339727 TGAGGAAGAGGACGACGATGA 60.340 52.381 0.00 0.00 0.00 2.92
597 682 1.095600 TGAGGAAGAGGACGACGATG 58.904 55.000 0.00 0.00 0.00 3.84
598 683 1.950909 GATGAGGAAGAGGACGACGAT 59.049 52.381 0.00 0.00 0.00 3.73
599 684 1.380524 GATGAGGAAGAGGACGACGA 58.619 55.000 0.00 0.00 0.00 4.20
601 686 1.064357 GACGATGAGGAAGAGGACGAC 59.936 57.143 0.00 0.00 0.00 4.34
602 687 1.380524 GACGATGAGGAAGAGGACGA 58.619 55.000 0.00 0.00 0.00 4.20
604 689 1.064357 GACGACGATGAGGAAGAGGAC 59.936 57.143 0.00 0.00 0.00 3.85
605 690 1.380524 GACGACGATGAGGAAGAGGA 58.619 55.000 0.00 0.00 0.00 3.71
606 691 0.382515 GGACGACGATGAGGAAGAGG 59.617 60.000 0.00 0.00 0.00 3.69
607 692 1.332375 GAGGACGACGATGAGGAAGAG 59.668 57.143 0.00 0.00 0.00 2.85
608 693 1.380524 GAGGACGACGATGAGGAAGA 58.619 55.000 0.00 0.00 0.00 2.87
609 694 0.382515 GGAGGACGACGATGAGGAAG 59.617 60.000 0.00 0.00 0.00 3.46
610 695 0.034380 AGGAGGACGACGATGAGGAA 60.034 55.000 0.00 0.00 0.00 3.36
616 701 0.464735 CTGAGGAGGAGGACGACGAT 60.465 60.000 0.00 0.00 0.00 3.73
798 892 2.122167 AACCACCGGCTCGCAAAAA 61.122 52.632 0.00 0.00 0.00 1.94
837 931 1.770658 TGCAATCTGTGGCCTAGCTAT 59.229 47.619 3.32 0.00 0.00 2.97
876 978 2.022195 AGCGAGCGACCTAACTAATCA 58.978 47.619 0.00 0.00 0.00 2.57
897 1003 3.935203 TCCTGCAGATTCGATTCAAGAAC 59.065 43.478 17.39 0.00 0.00 3.01
915 1021 3.030873 AGAATCTCCTCTCCACTCCTG 57.969 52.381 0.00 0.00 0.00 3.86
921 1032 2.825223 TCTGCAAGAATCTCCTCTCCA 58.175 47.619 0.00 0.00 42.31 3.86
1182 1293 3.866582 CCGAGGATGGGCAGGTCC 61.867 72.222 0.00 0.00 34.64 4.46
1206 1317 1.449601 GACGACCATGGTGCCGAAT 60.450 57.895 27.30 10.25 0.00 3.34
1752 1869 1.295746 GGGGAGAACAGAACCGTCC 59.704 63.158 0.00 0.00 0.00 4.79
1758 1875 2.654877 GCGTCGGGGAGAACAGAA 59.345 61.111 0.00 0.00 0.00 3.02
1815 1932 4.388499 TTGACGGAGGCGGGCTTC 62.388 66.667 5.24 1.73 0.00 3.86
1917 2034 2.675348 GTTGAAGCAGCAGTACTCATCC 59.325 50.000 0.00 0.00 0.00 3.51
1918 2035 3.594134 AGTTGAAGCAGCAGTACTCATC 58.406 45.455 0.00 0.00 0.00 2.92
1919 2036 3.594134 GAGTTGAAGCAGCAGTACTCAT 58.406 45.455 0.00 0.00 33.86 2.90
1942 2059 4.214327 CGCCTCCTTCTCCTCCGC 62.214 72.222 0.00 0.00 0.00 5.54
2157 2274 7.522721 ACAAGCTGTTGGTTCAGTTTAACTGA 61.523 38.462 22.16 22.16 44.44 3.41
2163 2310 3.129287 CAGACAAGCTGTTGGTTCAGTTT 59.871 43.478 0.00 0.00 39.85 2.66
2177 2324 3.825308 TGAATTCAATTCGCAGACAAGC 58.175 40.909 5.45 0.00 42.15 4.01
2178 2325 5.633927 TGATGAATTCAATTCGCAGACAAG 58.366 37.500 13.09 0.00 42.15 3.16
2179 2326 5.181811 ACTGATGAATTCAATTCGCAGACAA 59.818 36.000 26.95 3.84 42.20 3.18
2180 2327 4.696877 ACTGATGAATTCAATTCGCAGACA 59.303 37.500 26.95 13.35 42.20 3.41
2187 2334 7.344095 AGATGGGAACTGATGAATTCAATTC 57.656 36.000 13.09 13.00 39.34 2.17
2190 2337 6.247676 TCAAGATGGGAACTGATGAATTCAA 58.752 36.000 13.09 0.00 32.78 2.69
2261 2618 2.811431 TGTGAGCAGGTGTAAAATTCGG 59.189 45.455 0.00 0.00 0.00 4.30
2277 2669 3.947910 ACCAATCCAATTTGCTGTGAG 57.052 42.857 0.00 0.00 0.00 3.51
2297 2689 8.275015 TCAGAATTTCAGAAACAACACACTTA 57.725 30.769 0.00 0.00 0.00 2.24
2298 2690 7.156876 TCAGAATTTCAGAAACAACACACTT 57.843 32.000 0.00 0.00 0.00 3.16
2310 2702 9.173021 TGTGAGTTTTAGTTTCAGAATTTCAGA 57.827 29.630 0.00 0.00 0.00 3.27
2311 2703 9.226345 GTGTGAGTTTTAGTTTCAGAATTTCAG 57.774 33.333 0.00 0.00 0.00 3.02
2312 2704 8.188139 GGTGTGAGTTTTAGTTTCAGAATTTCA 58.812 33.333 0.00 0.00 0.00 2.69
2313 2705 8.188139 TGGTGTGAGTTTTAGTTTCAGAATTTC 58.812 33.333 0.00 0.00 0.00 2.17
2314 2706 8.062065 TGGTGTGAGTTTTAGTTTCAGAATTT 57.938 30.769 0.00 0.00 0.00 1.82
2315 2707 7.556275 TCTGGTGTGAGTTTTAGTTTCAGAATT 59.444 33.333 0.00 0.00 0.00 2.17
2316 2708 7.054124 TCTGGTGTGAGTTTTAGTTTCAGAAT 58.946 34.615 0.00 0.00 0.00 2.40
2353 2745 3.057876 GCAACAACGAATGGGATGTACAA 60.058 43.478 0.00 0.00 0.00 2.41
2365 2757 2.353269 CACCACAGTAAGCAACAACGAA 59.647 45.455 0.00 0.00 0.00 3.85
2545 2937 2.039624 AGGATGACCAGGGCGAGT 59.960 61.111 0.00 0.00 38.94 4.18
2563 2955 1.880340 CGCGACATTGGAGAGGAGC 60.880 63.158 0.00 0.00 0.00 4.70
2633 3028 1.547372 GAAATGGCAGTGGAGCATGTT 59.453 47.619 0.00 0.00 35.83 2.71
2642 3037 2.324330 TGGCGTCGAAATGGCAGTG 61.324 57.895 0.00 0.00 41.64 3.66
2694 3089 9.585099 TCTATGAAATTTGCGCAAAATTAGATT 57.415 25.926 36.42 22.87 45.73 2.40
2700 3095 5.813672 AGCATCTATGAAATTTGCGCAAAAT 59.186 32.000 36.42 27.39 40.32 1.82
2706 3101 4.923893 TGGAAGCATCTATGAAATTTGCG 58.076 39.130 0.00 0.00 38.32 4.85
2778 3194 7.878477 ACACATTCAGAAATAATTGCACAAG 57.122 32.000 0.00 0.00 0.00 3.16
2874 3295 1.028868 GGCATGTTCAGCTGGTCCTC 61.029 60.000 15.13 1.02 0.00 3.71
2948 3369 2.818432 CAGGACTGCAGCAAAGAAGAAT 59.182 45.455 15.27 0.00 0.00 2.40
3032 3454 1.453379 CCAAGCCAGGATCAGCCAG 60.453 63.158 0.00 0.00 40.02 4.85
3047 3469 4.947147 GCCACCGTGCTCACCCAA 62.947 66.667 0.00 0.00 0.00 4.12
3065 3487 1.303643 CAGAAGGGACAGGTTGCCC 60.304 63.158 0.00 0.00 45.04 5.36
3092 3514 1.738099 GCACACGATCAGGTTCGCT 60.738 57.895 0.00 0.00 42.82 4.93
3312 3741 3.398406 GGCCCGAACATTCACAATTTTT 58.602 40.909 0.00 0.00 0.00 1.94
3422 3851 2.312390 GTACAACCCAAAAAGCCTCCA 58.688 47.619 0.00 0.00 0.00 3.86
3456 3885 5.154418 CTCCTCCTCCTCCTTCTTCAATAT 58.846 45.833 0.00 0.00 0.00 1.28
3457 3886 4.551671 CTCCTCCTCCTCCTTCTTCAATA 58.448 47.826 0.00 0.00 0.00 1.90
3459 3888 2.560841 CCTCCTCCTCCTCCTTCTTCAA 60.561 54.545 0.00 0.00 0.00 2.69
3460 3889 1.007721 CCTCCTCCTCCTCCTTCTTCA 59.992 57.143 0.00 0.00 0.00 3.02
3461 3890 1.289530 TCCTCCTCCTCCTCCTTCTTC 59.710 57.143 0.00 0.00 0.00 2.87
3463 3892 1.290732 CTTCCTCCTCCTCCTCCTTCT 59.709 57.143 0.00 0.00 0.00 2.85
3464 3893 1.289530 TCTTCCTCCTCCTCCTCCTTC 59.710 57.143 0.00 0.00 0.00 3.46
3465 3894 1.398799 TCTTCCTCCTCCTCCTCCTT 58.601 55.000 0.00 0.00 0.00 3.36
3476 3905 5.359194 TTCCAGAATGTACATCTTCCTCC 57.641 43.478 9.23 0.00 0.00 4.30
3479 3908 6.426328 CAGCTATTCCAGAATGTACATCTTCC 59.574 42.308 9.23 0.00 32.50 3.46
3498 3937 7.507829 ACTTTCTTGATTGAGATAGCAGCTAT 58.492 34.615 15.22 15.22 30.65 2.97
3531 3970 9.747898 TGAATACTGACCAAATATACACCTTTT 57.252 29.630 0.00 0.00 0.00 2.27
3532 3971 9.920946 ATGAATACTGACCAAATATACACCTTT 57.079 29.630 0.00 0.00 0.00 3.11
3560 3999 3.372206 GTCGGTCAACAGATCCAATTCAG 59.628 47.826 0.00 0.00 0.00 3.02
3592 4051 1.454479 GATGGCATGTGGGGACAGG 60.454 63.158 3.81 0.00 44.46 4.00
3614 4109 0.535335 ATGGGCTGCATTGAGCTTTG 59.465 50.000 0.50 0.00 45.94 2.77
3617 4112 1.000019 ACATGGGCTGCATTGAGCT 60.000 52.632 0.50 0.00 45.94 4.09
3661 4156 5.757850 ACAAGGAAGAACAAGCTTACAAG 57.242 39.130 0.00 0.00 30.85 3.16
3662 4157 6.588204 TCTACAAGGAAGAACAAGCTTACAA 58.412 36.000 0.00 0.00 30.85 2.41
3663 4158 6.169557 TCTACAAGGAAGAACAAGCTTACA 57.830 37.500 0.00 0.00 30.85 2.41
3664 4159 6.035112 CGATCTACAAGGAAGAACAAGCTTAC 59.965 42.308 0.00 0.00 0.00 2.34
3665 4160 6.071560 TCGATCTACAAGGAAGAACAAGCTTA 60.072 38.462 0.00 0.00 0.00 3.09
3666 4161 4.932200 CGATCTACAAGGAAGAACAAGCTT 59.068 41.667 0.00 0.00 0.00 3.74
3667 4162 4.220821 TCGATCTACAAGGAAGAACAAGCT 59.779 41.667 0.00 0.00 0.00 3.74
3824 4319 6.186420 TGCAATATTTAGGCTATGACCTCA 57.814 37.500 0.00 0.00 41.50 3.86
4033 4528 4.118410 GCTCACGAAGATGAAGATGACAT 58.882 43.478 0.00 0.00 0.00 3.06
4079 4574 4.365514 ACACCCAGTAATGTTGATGACA 57.634 40.909 0.00 0.00 43.71 3.58
4097 4592 2.309528 TGGTGGCTTCGATGATACAC 57.690 50.000 1.89 7.42 0.00 2.90
4124 4619 3.484229 CGACGAAGCAAAAGACATCCATC 60.484 47.826 0.00 0.00 0.00 3.51
4159 4654 3.928992 GACACAACTGATGATCGTGATGT 59.071 43.478 5.42 6.07 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.