Multiple sequence alignment - TraesCS6D01G384100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G384100 chr6D 100.000 2498 0 0 499 2996 462614925 462612428 0.000000e+00 4614.0
1 TraesCS6D01G384100 chr6D 88.690 1618 171 9 501 2116 462555567 462553960 0.000000e+00 1964.0
2 TraesCS6D01G384100 chr6D 100.000 100 0 0 1 100 462615423 462615324 5.100000e-43 185.0
3 TraesCS6D01G384100 chr6A 96.289 1967 70 3 504 2468 609427775 609425810 0.000000e+00 3225.0
4 TraesCS6D01G384100 chr6A 88.380 1661 185 6 501 2158 609403305 609401650 0.000000e+00 1991.0
5 TraesCS6D01G384100 chr6A 96.053 76 1 1 22 95 609428148 609428073 4.060000e-24 122.0
6 TraesCS6D01G384100 chr6A 76.923 169 34 5 2494 2660 14898528 14898693 1.140000e-14 91.6
7 TraesCS6D01G384100 chr6A 76.923 169 34 5 2494 2660 14959865 14960030 1.140000e-14 91.6
8 TraesCS6D01G384100 chr6A 76.301 173 28 11 2494 2660 14972201 14972366 2.480000e-11 80.5
9 TraesCS6D01G384100 chr6A 75.439 171 33 8 2494 2660 14910915 14911080 1.150000e-09 75.0
10 TraesCS6D01G384100 chr6A 74.854 171 34 8 2494 2660 14847923 14848088 5.360000e-08 69.4
11 TraesCS6D01G384100 chr6A 74.854 171 34 8 2494 2660 14918952 14919117 5.360000e-08 69.4
12 TraesCS6D01G384100 chr6B 97.589 1659 40 0 499 2157 705316527 705314869 0.000000e+00 2843.0
13 TraesCS6D01G384100 chr6B 87.830 1364 156 6 710 2068 705182947 705181589 0.000000e+00 1591.0
14 TraesCS6D01G384100 chr6B 91.944 360 22 4 2142 2495 705314718 705314360 5.770000e-137 497.0
15 TraesCS6D01G384100 chr6B 92.308 221 16 1 501 721 705183850 705183631 2.240000e-81 313.0
16 TraesCS6D01G384100 chr6B 97.000 100 1 1 1 100 705316672 705316575 1.850000e-37 167.0
17 TraesCS6D01G384100 chrUn 100.000 428 0 0 840 1267 476451866 476451439 0.000000e+00 791.0
18 TraesCS6D01G384100 chr3D 87.136 583 67 4 501 1079 144479058 144478480 0.000000e+00 654.0
19 TraesCS6D01G384100 chr7D 81.982 111 20 0 656 766 444349634 444349744 8.840000e-16 95.3
20 TraesCS6D01G384100 chr5A 84.211 95 14 1 2890 2983 408928319 408928225 1.140000e-14 91.6
21 TraesCS6D01G384100 chr2B 78.986 138 26 3 2524 2660 746488338 746488203 1.140000e-14 91.6
22 TraesCS6D01G384100 chr2D 87.500 64 8 0 2530 2593 649011201 649011138 1.150000e-09 75.0
23 TraesCS6D01G384100 chr2D 89.286 56 6 0 2538 2593 648960054 648959999 1.490000e-08 71.3
24 TraesCS6D01G384100 chr2D 97.059 34 1 0 1358 1391 9310623 9310656 1.160000e-04 58.4
25 TraesCS6D01G384100 chr2D 100.000 28 0 0 1364 1391 9664413 9664386 5.000000e-03 52.8
26 TraesCS6D01G384100 chr2A 96.875 32 1 0 1360 1391 8631787 8631818 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G384100 chr6D 462612428 462615423 2995 True 2399.5 4614 100.000 1 2996 2 chr6D.!!$R2 2995
1 TraesCS6D01G384100 chr6D 462553960 462555567 1607 True 1964.0 1964 88.690 501 2116 1 chr6D.!!$R1 1615
2 TraesCS6D01G384100 chr6A 609401650 609403305 1655 True 1991.0 1991 88.380 501 2158 1 chr6A.!!$R1 1657
3 TraesCS6D01G384100 chr6A 609425810 609428148 2338 True 1673.5 3225 96.171 22 2468 2 chr6A.!!$R2 2446
4 TraesCS6D01G384100 chr6B 705314360 705316672 2312 True 1169.0 2843 95.511 1 2495 3 chr6B.!!$R2 2494
5 TraesCS6D01G384100 chr6B 705181589 705183850 2261 True 952.0 1591 90.069 501 2068 2 chr6B.!!$R1 1567
6 TraesCS6D01G384100 chr3D 144478480 144479058 578 True 654.0 654 87.136 501 1079 1 chr3D.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 1538 0.674581 CTCCAATGCCTTGTCGCTCA 60.675 55.0 0.91 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2612 3489 0.030101 CTCCTCTTCGATCCGACAGC 59.97 60.0 0.0 0.0 34.89 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
538 539 2.025981 CCCAAGATGGAGATGGTTGTCA 60.026 50.000 0.00 0.00 40.96 3.58
621 622 5.503927 AGCCATGCAAATCTAGAGAAGAAA 58.496 37.500 0.00 0.00 37.89 2.52
652 653 1.953559 ACAACAGCTGCTTCTTCGAA 58.046 45.000 15.27 0.00 0.00 3.71
675 676 2.043852 ATGGTCGTCGAGGAGGCT 60.044 61.111 8.30 0.00 0.00 4.58
771 1471 2.362736 CATGTCCTGGACACCATCAAG 58.637 52.381 30.50 11.33 45.65 3.02
790 1490 1.152599 TACAAGGCCCTTTGCAGCA 59.847 52.632 0.00 0.00 43.89 4.41
805 1505 1.593196 CAGCACAAGGGACGAAAAGA 58.407 50.000 0.00 0.00 0.00 2.52
838 1538 0.674581 CTCCAATGCCTTGTCGCTCA 60.675 55.000 0.91 0.00 0.00 4.26
1666 2369 4.918810 AGAAACTTTCTGGCGAACAATT 57.081 36.364 3.07 0.00 38.91 2.32
1726 2429 3.957497 GAGAGATCGCCCAGTGGATATAT 59.043 47.826 11.95 0.00 0.00 0.86
1856 2559 2.809601 CTCCGTTGTTCCGCCGAG 60.810 66.667 0.00 0.00 0.00 4.63
2003 2706 7.110216 GCGCATACGATTTAGTTAAAGAATGTG 59.890 37.037 0.30 0.00 43.93 3.21
2042 2745 6.041423 TGAAGTTGAGATGACAATGAGCTA 57.959 37.500 0.00 0.00 32.36 3.32
2229 3104 2.154462 GCACTTGGCAGTCTACACAAT 58.846 47.619 0.00 0.00 43.97 2.71
2327 3204 2.685100 GTGTCACTCTAGGGGAAAACG 58.315 52.381 0.00 0.00 0.00 3.60
2338 3215 4.376225 AGGGGAAAACGGTCAATTCTTA 57.624 40.909 0.00 0.00 0.00 2.10
2339 3216 4.077108 AGGGGAAAACGGTCAATTCTTAC 58.923 43.478 0.00 0.00 0.00 2.34
2340 3217 3.192001 GGGGAAAACGGTCAATTCTTACC 59.808 47.826 0.00 0.00 0.00 2.85
2370 3247 5.655090 TGCTAGGTACTGCATAGTAGTTTCA 59.345 40.000 0.00 0.00 39.96 2.69
2390 3267 1.031235 TGCACAACCACACCTCAATG 58.969 50.000 0.00 0.00 0.00 2.82
2397 3274 4.588528 ACAACCACACCTCAATGCTAATTT 59.411 37.500 0.00 0.00 0.00 1.82
2421 3298 3.366052 AAGAGGGTTTTATCATGGCGT 57.634 42.857 0.00 0.00 0.00 5.68
2426 3303 5.357032 AGAGGGTTTTATCATGGCGTTAAAG 59.643 40.000 0.00 0.00 0.00 1.85
2457 3334 4.731720 TCATGGCAATGACAACAAATACG 58.268 39.130 0.00 0.00 37.91 3.06
2477 3354 2.933878 AAGTGTTGAACCCGCTCGCA 62.934 55.000 0.00 0.00 0.00 5.10
2485 3362 3.659092 CCCGCTCGCACAAAAGCA 61.659 61.111 0.00 0.00 38.45 3.91
2495 3372 2.407090 GCACAAAAGCAGGACCAAATC 58.593 47.619 0.00 0.00 0.00 2.17
2496 3373 2.224018 GCACAAAAGCAGGACCAAATCA 60.224 45.455 0.00 0.00 0.00 2.57
2497 3374 3.740764 GCACAAAAGCAGGACCAAATCAA 60.741 43.478 0.00 0.00 0.00 2.57
2498 3375 4.053295 CACAAAAGCAGGACCAAATCAAG 58.947 43.478 0.00 0.00 0.00 3.02
2499 3376 3.960102 ACAAAAGCAGGACCAAATCAAGA 59.040 39.130 0.00 0.00 0.00 3.02
2500 3377 4.405358 ACAAAAGCAGGACCAAATCAAGAA 59.595 37.500 0.00 0.00 0.00 2.52
2501 3378 5.104982 ACAAAAGCAGGACCAAATCAAGAAA 60.105 36.000 0.00 0.00 0.00 2.52
2502 3379 4.590850 AAGCAGGACCAAATCAAGAAAC 57.409 40.909 0.00 0.00 0.00 2.78
2503 3380 3.837355 AGCAGGACCAAATCAAGAAACT 58.163 40.909 0.00 0.00 0.00 2.66
2504 3381 4.985538 AGCAGGACCAAATCAAGAAACTA 58.014 39.130 0.00 0.00 0.00 2.24
2505 3382 5.006386 AGCAGGACCAAATCAAGAAACTAG 58.994 41.667 0.00 0.00 0.00 2.57
2506 3383 5.003804 GCAGGACCAAATCAAGAAACTAGA 58.996 41.667 0.00 0.00 0.00 2.43
2507 3384 5.473504 GCAGGACCAAATCAAGAAACTAGAA 59.526 40.000 0.00 0.00 0.00 2.10
2508 3385 6.568653 GCAGGACCAAATCAAGAAACTAGAAC 60.569 42.308 0.00 0.00 0.00 3.01
2509 3386 6.004574 AGGACCAAATCAAGAAACTAGAACC 58.995 40.000 0.00 0.00 0.00 3.62
2510 3387 6.004574 GGACCAAATCAAGAAACTAGAACCT 58.995 40.000 0.00 0.00 0.00 3.50
2511 3388 7.017254 AGGACCAAATCAAGAAACTAGAACCTA 59.983 37.037 0.00 0.00 0.00 3.08
2512 3389 7.334671 GGACCAAATCAAGAAACTAGAACCTAG 59.665 40.741 0.00 0.00 0.00 3.02
2513 3390 7.168905 ACCAAATCAAGAAACTAGAACCTAGG 58.831 38.462 7.41 7.41 0.00 3.02
2514 3391 6.599638 CCAAATCAAGAAACTAGAACCTAGGG 59.400 42.308 14.81 0.00 0.00 3.53
2515 3392 5.959583 ATCAAGAAACTAGAACCTAGGGG 57.040 43.478 14.81 0.25 38.88 4.79
2516 3393 5.019657 TCAAGAAACTAGAACCTAGGGGA 57.980 43.478 14.81 0.00 36.25 4.81
2517 3394 5.024118 TCAAGAAACTAGAACCTAGGGGAG 58.976 45.833 14.81 6.83 36.25 4.30
2518 3395 4.969136 AGAAACTAGAACCTAGGGGAGA 57.031 45.455 14.81 0.00 36.25 3.71
2519 3396 5.286760 AGAAACTAGAACCTAGGGGAGAA 57.713 43.478 14.81 0.00 36.25 2.87
2520 3397 5.855988 AGAAACTAGAACCTAGGGGAGAAT 58.144 41.667 14.81 0.00 36.25 2.40
2521 3398 5.663556 AGAAACTAGAACCTAGGGGAGAATG 59.336 44.000 14.81 0.00 36.25 2.67
2522 3399 3.930035 ACTAGAACCTAGGGGAGAATGG 58.070 50.000 14.81 0.00 36.25 3.16
2523 3400 3.536434 ACTAGAACCTAGGGGAGAATGGA 59.464 47.826 14.81 0.00 36.25 3.41
2524 3401 3.053359 AGAACCTAGGGGAGAATGGAG 57.947 52.381 14.81 0.00 36.25 3.86
2525 3402 1.418264 GAACCTAGGGGAGAATGGAGC 59.582 57.143 14.81 0.00 36.25 4.70
2526 3403 0.644937 ACCTAGGGGAGAATGGAGCT 59.355 55.000 14.81 0.00 36.25 4.09
2527 3404 1.347062 CCTAGGGGAGAATGGAGCTC 58.653 60.000 4.71 4.71 33.58 4.09
2528 3405 1.132881 CCTAGGGGAGAATGGAGCTCT 60.133 57.143 14.64 0.00 32.98 4.09
2529 3406 2.247358 CTAGGGGAGAATGGAGCTCTC 58.753 57.143 14.64 3.27 38.92 3.20
2530 3407 0.341258 AGGGGAGAATGGAGCTCTCA 59.659 55.000 14.64 10.46 41.01 3.27
2531 3408 0.467804 GGGGAGAATGGAGCTCTCAC 59.532 60.000 14.64 3.43 41.80 3.51
2532 3409 1.198713 GGGAGAATGGAGCTCTCACA 58.801 55.000 14.64 3.38 42.06 3.58
2533 3410 1.138661 GGGAGAATGGAGCTCTCACAG 59.861 57.143 14.64 0.00 42.06 3.66
2551 3428 2.507643 GCGATTAGCGACTAGTGGC 58.492 57.895 21.02 21.02 44.57 5.01
2552 3429 0.940047 GCGATTAGCGACTAGTGGCC 60.940 60.000 24.24 9.61 44.57 5.36
2553 3430 0.660595 CGATTAGCGACTAGTGGCCG 60.661 60.000 24.24 16.94 44.57 6.13
2554 3431 0.384669 GATTAGCGACTAGTGGCCGT 59.615 55.000 24.24 11.07 34.71 5.68
2555 3432 0.822164 ATTAGCGACTAGTGGCCGTT 59.178 50.000 24.24 11.10 34.71 4.44
2556 3433 0.108992 TTAGCGACTAGTGGCCGTTG 60.109 55.000 24.24 0.00 34.71 4.10
2557 3434 1.940883 TAGCGACTAGTGGCCGTTGG 61.941 60.000 24.24 0.00 34.71 3.77
2558 3435 2.967397 CGACTAGTGGCCGTTGGA 59.033 61.111 0.00 0.00 0.00 3.53
2559 3436 1.515954 CGACTAGTGGCCGTTGGAT 59.484 57.895 0.00 0.00 0.00 3.41
2560 3437 0.742505 CGACTAGTGGCCGTTGGATA 59.257 55.000 0.00 0.00 0.00 2.59
2561 3438 1.269102 CGACTAGTGGCCGTTGGATAG 60.269 57.143 0.00 0.00 0.00 2.08
2562 3439 1.755380 GACTAGTGGCCGTTGGATAGT 59.245 52.381 0.00 0.00 0.00 2.12
2563 3440 2.167900 GACTAGTGGCCGTTGGATAGTT 59.832 50.000 0.00 0.00 0.00 2.24
2564 3441 2.570302 ACTAGTGGCCGTTGGATAGTTT 59.430 45.455 0.00 0.00 0.00 2.66
2565 3442 2.579410 AGTGGCCGTTGGATAGTTTT 57.421 45.000 0.00 0.00 0.00 2.43
2566 3443 2.159382 AGTGGCCGTTGGATAGTTTTG 58.841 47.619 0.00 0.00 0.00 2.44
2567 3444 0.885196 TGGCCGTTGGATAGTTTTGC 59.115 50.000 0.00 0.00 0.00 3.68
2568 3445 1.173913 GGCCGTTGGATAGTTTTGCT 58.826 50.000 0.00 0.00 0.00 3.91
2569 3446 1.544246 GGCCGTTGGATAGTTTTGCTT 59.456 47.619 0.00 0.00 0.00 3.91
2570 3447 2.595386 GCCGTTGGATAGTTTTGCTTG 58.405 47.619 0.00 0.00 0.00 4.01
2571 3448 2.227865 GCCGTTGGATAGTTTTGCTTGA 59.772 45.455 0.00 0.00 0.00 3.02
2572 3449 3.119495 GCCGTTGGATAGTTTTGCTTGAT 60.119 43.478 0.00 0.00 0.00 2.57
2573 3450 4.414852 CCGTTGGATAGTTTTGCTTGATG 58.585 43.478 0.00 0.00 0.00 3.07
2574 3451 3.853671 CGTTGGATAGTTTTGCTTGATGC 59.146 43.478 0.00 0.00 43.25 3.91
2575 3452 3.763097 TGGATAGTTTTGCTTGATGCG 57.237 42.857 0.00 0.00 46.63 4.73
2576 3453 3.342719 TGGATAGTTTTGCTTGATGCGA 58.657 40.909 0.00 0.00 46.63 5.10
2577 3454 3.947196 TGGATAGTTTTGCTTGATGCGAT 59.053 39.130 0.00 0.00 46.63 4.58
2578 3455 4.035558 TGGATAGTTTTGCTTGATGCGATC 59.964 41.667 0.00 0.00 46.63 3.69
2579 3456 2.927553 AGTTTTGCTTGATGCGATCC 57.072 45.000 0.00 0.00 46.63 3.36
2580 3457 1.131126 AGTTTTGCTTGATGCGATCCG 59.869 47.619 0.00 0.00 46.63 4.18
2581 3458 0.451383 TTTTGCTTGATGCGATCCGG 59.549 50.000 0.00 0.00 46.63 5.14
2582 3459 1.375853 TTTGCTTGATGCGATCCGGG 61.376 55.000 0.00 0.00 46.63 5.73
2583 3460 3.654020 GCTTGATGCGATCCGGGC 61.654 66.667 0.00 0.00 0.00 6.13
2584 3461 2.974698 CTTGATGCGATCCGGGCC 60.975 66.667 0.00 0.00 0.00 5.80
2585 3462 4.908687 TTGATGCGATCCGGGCCG 62.909 66.667 21.46 21.46 0.00 6.13
2598 3475 4.467084 GGCCGTCGGATCAAGCCA 62.467 66.667 17.49 0.00 43.32 4.75
2599 3476 3.195698 GCCGTCGGATCAAGCCAC 61.196 66.667 17.49 0.00 0.00 5.01
2600 3477 2.511600 CCGTCGGATCAAGCCACC 60.512 66.667 4.91 0.00 0.00 4.61
2601 3478 2.885644 CGTCGGATCAAGCCACCG 60.886 66.667 0.00 0.00 46.71 4.94
2602 3479 2.511600 GTCGGATCAAGCCACCGG 60.512 66.667 0.00 0.00 45.61 5.28
2603 3480 2.682136 TCGGATCAAGCCACCGGA 60.682 61.111 9.46 0.00 45.61 5.14
2604 3481 2.063979 TCGGATCAAGCCACCGGAT 61.064 57.895 9.46 0.00 45.61 4.18
2605 3482 1.889105 CGGATCAAGCCACCGGATG 60.889 63.158 9.46 2.15 42.48 3.51
2606 3483 1.526887 GGATCAAGCCACCGGATGA 59.473 57.895 9.46 4.72 0.00 2.92
2607 3484 0.815615 GGATCAAGCCACCGGATGAC 60.816 60.000 9.46 0.00 0.00 3.06
2608 3485 0.815615 GATCAAGCCACCGGATGACC 60.816 60.000 9.46 0.00 0.00 4.02
2609 3486 1.274703 ATCAAGCCACCGGATGACCT 61.275 55.000 9.46 0.08 0.00 3.85
2610 3487 1.450312 CAAGCCACCGGATGACCTC 60.450 63.158 9.46 0.00 0.00 3.85
2611 3488 3.019003 AAGCCACCGGATGACCTCG 62.019 63.158 9.46 0.00 0.00 4.63
2616 3493 3.461773 CCGGATGACCTCGGCTGT 61.462 66.667 0.00 0.00 39.78 4.40
2617 3494 2.105128 CGGATGACCTCGGCTGTC 59.895 66.667 0.00 0.00 0.00 3.51
2618 3495 2.105128 GGATGACCTCGGCTGTCG 59.895 66.667 0.00 0.00 35.46 4.35
2619 3496 2.105128 GATGACCTCGGCTGTCGG 59.895 66.667 0.30 0.00 39.77 4.79
2620 3497 2.362503 ATGACCTCGGCTGTCGGA 60.363 61.111 0.30 0.00 39.77 4.55
2621 3498 1.739338 GATGACCTCGGCTGTCGGAT 61.739 60.000 0.30 0.00 39.77 4.18
2622 3499 1.739338 ATGACCTCGGCTGTCGGATC 61.739 60.000 0.30 0.00 39.77 3.36
2623 3500 3.471244 GACCTCGGCTGTCGGATCG 62.471 68.421 0.30 0.00 39.77 3.69
2624 3501 3.209812 CCTCGGCTGTCGGATCGA 61.210 66.667 0.30 0.00 39.77 3.59
2625 3502 2.771639 CCTCGGCTGTCGGATCGAA 61.772 63.158 0.30 0.00 37.72 3.71
2626 3503 1.298713 CTCGGCTGTCGGATCGAAG 60.299 63.158 0.30 0.00 37.72 3.79
2627 3504 1.715862 CTCGGCTGTCGGATCGAAGA 61.716 60.000 0.30 0.00 37.72 2.87
2628 3505 1.298713 CGGCTGTCGGATCGAAGAG 60.299 63.158 0.00 0.00 37.72 2.85
2629 3506 1.066587 GGCTGTCGGATCGAAGAGG 59.933 63.158 0.00 0.00 43.63 3.69
2630 3507 1.384989 GGCTGTCGGATCGAAGAGGA 61.385 60.000 0.00 0.00 43.63 3.71
2631 3508 0.030101 GCTGTCGGATCGAAGAGGAG 59.970 60.000 0.00 0.00 43.63 3.69
2632 3509 0.665835 CTGTCGGATCGAAGAGGAGG 59.334 60.000 0.00 0.00 43.63 4.30
2633 3510 1.360911 GTCGGATCGAAGAGGAGGC 59.639 63.158 0.00 0.00 43.63 4.70
2634 3511 1.076995 TCGGATCGAAGAGGAGGCA 60.077 57.895 0.00 0.00 43.63 4.75
2635 3512 1.066587 CGGATCGAAGAGGAGGCAC 59.933 63.158 0.00 0.00 43.63 5.01
2636 3513 1.388065 CGGATCGAAGAGGAGGCACT 61.388 60.000 0.00 0.00 43.63 4.40
2637 3514 1.693627 GGATCGAAGAGGAGGCACTA 58.306 55.000 0.00 0.00 43.63 2.74
2638 3515 2.243810 GGATCGAAGAGGAGGCACTAT 58.756 52.381 0.00 0.00 43.63 2.12
2639 3516 2.630580 GGATCGAAGAGGAGGCACTATT 59.369 50.000 0.00 0.00 43.63 1.73
2640 3517 3.553922 GGATCGAAGAGGAGGCACTATTG 60.554 52.174 0.00 0.00 43.63 1.90
2641 3518 2.224161 ATCGAAGAGGAGGCACTATTGC 60.224 50.000 0.00 0.00 45.46 3.56
2658 3535 8.832487 CACTATTGCAATGAATAGTTTCACTC 57.168 34.615 22.27 0.00 43.60 3.51
2659 3536 8.671921 CACTATTGCAATGAATAGTTTCACTCT 58.328 33.333 22.27 0.00 43.60 3.24
2660 3537 9.236006 ACTATTGCAATGAATAGTTTCACTCTT 57.764 29.630 22.27 0.00 43.60 2.85
2661 3538 9.713740 CTATTGCAATGAATAGTTTCACTCTTC 57.286 33.333 22.27 0.00 44.36 2.87
2662 3539 7.509141 TTGCAATGAATAGTTTCACTCTTCA 57.491 32.000 0.00 7.05 44.36 3.02
2663 3540 6.902341 TGCAATGAATAGTTTCACTCTTCAC 58.098 36.000 6.81 0.00 41.84 3.18
2664 3541 6.712095 TGCAATGAATAGTTTCACTCTTCACT 59.288 34.615 6.81 0.00 41.84 3.41
2665 3542 7.020010 GCAATGAATAGTTTCACTCTTCACTG 58.980 38.462 8.36 8.36 41.84 3.66
2666 3543 7.095060 GCAATGAATAGTTTCACTCTTCACTGA 60.095 37.037 14.17 0.00 41.84 3.41
2667 3544 8.777413 CAATGAATAGTTTCACTCTTCACTGAA 58.223 33.333 7.37 0.00 41.84 3.02
2668 3545 8.908786 ATGAATAGTTTCACTCTTCACTGAAA 57.091 30.769 6.81 0.00 41.84 2.69
2669 3546 8.731275 TGAATAGTTTCACTCTTCACTGAAAA 57.269 30.769 1.65 0.00 36.71 2.29
2670 3547 9.173021 TGAATAGTTTCACTCTTCACTGAAAAA 57.827 29.630 1.65 0.00 36.71 1.94
2685 3562 3.015516 AAAAATCTCGTGCCACCGT 57.984 47.368 0.00 0.00 0.00 4.83
2686 3563 0.872388 AAAAATCTCGTGCCACCGTC 59.128 50.000 0.00 0.00 0.00 4.79
2687 3564 0.250124 AAAATCTCGTGCCACCGTCA 60.250 50.000 0.00 0.00 0.00 4.35
2688 3565 0.036388 AAATCTCGTGCCACCGTCAT 60.036 50.000 0.00 0.00 0.00 3.06
2689 3566 0.036388 AATCTCGTGCCACCGTCATT 60.036 50.000 0.00 0.00 0.00 2.57
2690 3567 0.821517 ATCTCGTGCCACCGTCATTA 59.178 50.000 0.00 0.00 0.00 1.90
2691 3568 0.821517 TCTCGTGCCACCGTCATTAT 59.178 50.000 0.00 0.00 0.00 1.28
2692 3569 1.206132 TCTCGTGCCACCGTCATTATT 59.794 47.619 0.00 0.00 0.00 1.40
2693 3570 2.006888 CTCGTGCCACCGTCATTATTT 58.993 47.619 0.00 0.00 0.00 1.40
2694 3571 2.418628 CTCGTGCCACCGTCATTATTTT 59.581 45.455 0.00 0.00 0.00 1.82
2695 3572 2.417239 TCGTGCCACCGTCATTATTTTC 59.583 45.455 0.00 0.00 0.00 2.29
2696 3573 2.160615 CGTGCCACCGTCATTATTTTCA 59.839 45.455 0.00 0.00 0.00 2.69
2697 3574 3.181501 CGTGCCACCGTCATTATTTTCAT 60.182 43.478 0.00 0.00 0.00 2.57
2698 3575 4.104776 GTGCCACCGTCATTATTTTCATG 58.895 43.478 0.00 0.00 0.00 3.07
2699 3576 3.115554 GCCACCGTCATTATTTTCATGC 58.884 45.455 0.00 0.00 0.00 4.06
2700 3577 3.705604 CCACCGTCATTATTTTCATGCC 58.294 45.455 0.00 0.00 0.00 4.40
2701 3578 3.130164 CCACCGTCATTATTTTCATGCCA 59.870 43.478 0.00 0.00 0.00 4.92
2702 3579 4.104776 CACCGTCATTATTTTCATGCCAC 58.895 43.478 0.00 0.00 0.00 5.01
2703 3580 3.181501 ACCGTCATTATTTTCATGCCACG 60.182 43.478 0.00 0.00 0.00 4.94
2704 3581 2.783284 CGTCATTATTTTCATGCCACGC 59.217 45.455 0.00 0.00 0.00 5.34
2705 3582 3.115554 GTCATTATTTTCATGCCACGCC 58.884 45.455 0.00 0.00 0.00 5.68
2706 3583 2.118683 CATTATTTTCATGCCACGCCG 58.881 47.619 0.00 0.00 0.00 6.46
2707 3584 1.454201 TTATTTTCATGCCACGCCGA 58.546 45.000 0.00 0.00 0.00 5.54
2708 3585 1.013596 TATTTTCATGCCACGCCGAG 58.986 50.000 0.00 0.00 0.00 4.63
2709 3586 1.656818 ATTTTCATGCCACGCCGAGG 61.657 55.000 0.00 0.00 0.00 4.63
2710 3587 4.776322 TTCATGCCACGCCGAGGG 62.776 66.667 2.03 0.00 0.00 4.30
2716 3593 2.593436 CCACGCCGAGGGTGTTTT 60.593 61.111 16.02 0.00 44.78 2.43
2717 3594 2.613506 CCACGCCGAGGGTGTTTTC 61.614 63.158 16.02 0.00 44.78 2.29
2718 3595 2.663852 ACGCCGAGGGTGTTTTCG 60.664 61.111 0.00 0.00 44.78 3.46
2719 3596 2.663852 CGCCGAGGGTGTTTTCGT 60.664 61.111 0.00 0.00 35.14 3.85
2720 3597 2.664436 CGCCGAGGGTGTTTTCGTC 61.664 63.158 0.00 0.00 35.14 4.20
2721 3598 1.301479 GCCGAGGGTGTTTTCGTCT 60.301 57.895 0.00 0.00 35.14 4.18
2722 3599 0.883370 GCCGAGGGTGTTTTCGTCTT 60.883 55.000 0.00 0.00 35.14 3.01
2723 3600 1.589803 CCGAGGGTGTTTTCGTCTTT 58.410 50.000 0.00 0.00 35.14 2.52
2724 3601 1.944709 CCGAGGGTGTTTTCGTCTTTT 59.055 47.619 0.00 0.00 35.14 2.27
2725 3602 2.032290 CCGAGGGTGTTTTCGTCTTTTC 60.032 50.000 0.00 0.00 35.14 2.29
2726 3603 2.610374 CGAGGGTGTTTTCGTCTTTTCA 59.390 45.455 0.00 0.00 32.44 2.69
2727 3604 3.545426 CGAGGGTGTTTTCGTCTTTTCAC 60.545 47.826 0.00 0.00 32.44 3.18
2728 3605 3.349022 AGGGTGTTTTCGTCTTTTCACA 58.651 40.909 0.00 0.00 0.00 3.58
2729 3606 3.951680 AGGGTGTTTTCGTCTTTTCACAT 59.048 39.130 0.00 0.00 0.00 3.21
2730 3607 4.041723 GGGTGTTTTCGTCTTTTCACATG 58.958 43.478 0.00 0.00 0.00 3.21
2731 3608 4.439563 GGGTGTTTTCGTCTTTTCACATGT 60.440 41.667 0.00 0.00 0.00 3.21
2732 3609 5.220892 GGGTGTTTTCGTCTTTTCACATGTA 60.221 40.000 0.00 0.00 0.00 2.29
2733 3610 5.907391 GGTGTTTTCGTCTTTTCACATGTAG 59.093 40.000 0.00 0.00 0.00 2.74
2734 3611 5.907391 GTGTTTTCGTCTTTTCACATGTAGG 59.093 40.000 0.00 0.00 0.00 3.18
2735 3612 5.587043 TGTTTTCGTCTTTTCACATGTAGGT 59.413 36.000 0.00 0.00 0.00 3.08
2736 3613 6.762187 TGTTTTCGTCTTTTCACATGTAGGTA 59.238 34.615 0.00 0.00 0.00 3.08
2737 3614 7.442969 TGTTTTCGTCTTTTCACATGTAGGTAT 59.557 33.333 0.00 0.00 0.00 2.73
2738 3615 8.928733 GTTTTCGTCTTTTCACATGTAGGTATA 58.071 33.333 0.00 0.00 0.00 1.47
2739 3616 9.661563 TTTTCGTCTTTTCACATGTAGGTATAT 57.338 29.630 0.00 0.00 0.00 0.86
2753 3630 9.973450 CATGTAGGTATATATAGCAACATCTCC 57.027 37.037 20.95 3.95 33.40 3.71
2754 3631 8.534954 TGTAGGTATATATAGCAACATCTCCC 57.465 38.462 20.95 3.32 33.40 4.30
2755 3632 6.716934 AGGTATATATAGCAACATCTCCCG 57.283 41.667 20.95 0.00 33.40 5.14
2756 3633 6.195700 AGGTATATATAGCAACATCTCCCGT 58.804 40.000 20.95 0.00 33.40 5.28
2757 3634 7.351952 AGGTATATATAGCAACATCTCCCGTA 58.648 38.462 20.95 0.00 33.40 4.02
2758 3635 7.502895 AGGTATATATAGCAACATCTCCCGTAG 59.497 40.741 20.95 0.00 33.40 3.51
2759 3636 7.501559 GGTATATATAGCAACATCTCCCGTAGA 59.498 40.741 15.49 0.00 39.02 2.59
2760 3637 5.906113 ATATAGCAACATCTCCCGTAGAG 57.094 43.478 0.00 0.00 44.75 2.43
2768 3645 3.024431 CTCCCGTAGAGACCTAGCC 57.976 63.158 0.00 0.00 46.50 3.93
2769 3646 0.885596 CTCCCGTAGAGACCTAGCCG 60.886 65.000 0.00 0.00 46.50 5.52
2770 3647 2.553727 CCCGTAGAGACCTAGCCGC 61.554 68.421 0.00 0.00 0.00 6.53
2771 3648 2.553727 CCGTAGAGACCTAGCCGCC 61.554 68.421 0.00 0.00 0.00 6.13
2772 3649 1.526455 CGTAGAGACCTAGCCGCCT 60.526 63.158 0.00 0.00 0.00 5.52
2773 3650 1.508808 CGTAGAGACCTAGCCGCCTC 61.509 65.000 0.00 0.00 0.00 4.70
2774 3651 1.150992 TAGAGACCTAGCCGCCTCC 59.849 63.158 0.00 0.00 0.00 4.30
2775 3652 1.354168 TAGAGACCTAGCCGCCTCCT 61.354 60.000 0.00 0.00 0.00 3.69
2776 3653 2.123640 AGACCTAGCCGCCTCCTC 60.124 66.667 0.00 0.00 0.00 3.71
2777 3654 3.228017 GACCTAGCCGCCTCCTCC 61.228 72.222 0.00 0.00 0.00 4.30
2778 3655 3.742248 GACCTAGCCGCCTCCTCCT 62.742 68.421 0.00 0.00 0.00 3.69
2779 3656 2.915137 CCTAGCCGCCTCCTCCTC 60.915 72.222 0.00 0.00 0.00 3.71
2780 3657 2.915137 CTAGCCGCCTCCTCCTCC 60.915 72.222 0.00 0.00 0.00 4.30
2781 3658 4.541648 TAGCCGCCTCCTCCTCCC 62.542 72.222 0.00 0.00 0.00 4.30
2784 3661 4.150454 CCGCCTCCTCCTCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
2785 3662 2.520741 CGCCTCCTCCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
2786 3663 2.123033 GCCTCCTCCTCCCTCTCC 60.123 72.222 0.00 0.00 0.00 3.71
2787 3664 2.710826 GCCTCCTCCTCCCTCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
2788 3665 1.541672 CCTCCTCCTCCCTCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
2789 3666 1.150536 CTCCTCCTCCCTCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
2790 3667 2.520741 CCTCCTCCCTCTCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
2791 3668 2.904866 CTCCTCCCTCTCCTCGCG 60.905 72.222 0.00 0.00 0.00 5.87
2816 3693 3.471806 GCCTCCCTCCGAACCCTC 61.472 72.222 0.00 0.00 0.00 4.30
2817 3694 3.148279 CCTCCCTCCGAACCCTCG 61.148 72.222 0.00 0.00 45.02 4.63
2855 3732 4.552365 CCCACGCCGCCATCATCT 62.552 66.667 0.00 0.00 0.00 2.90
2856 3733 2.969238 CCACGCCGCCATCATCTC 60.969 66.667 0.00 0.00 0.00 2.75
2857 3734 2.969238 CACGCCGCCATCATCTCC 60.969 66.667 0.00 0.00 0.00 3.71
2858 3735 4.592192 ACGCCGCCATCATCTCCG 62.592 66.667 0.00 0.00 0.00 4.63
2886 3763 2.123683 CCTCCTCTGCCGCCTCTA 60.124 66.667 0.00 0.00 0.00 2.43
2887 3764 1.532794 CCTCCTCTGCCGCCTCTAT 60.533 63.158 0.00 0.00 0.00 1.98
2888 3765 1.118356 CCTCCTCTGCCGCCTCTATT 61.118 60.000 0.00 0.00 0.00 1.73
2889 3766 0.033228 CTCCTCTGCCGCCTCTATTG 59.967 60.000 0.00 0.00 0.00 1.90
2890 3767 0.687757 TCCTCTGCCGCCTCTATTGT 60.688 55.000 0.00 0.00 0.00 2.71
2891 3768 1.040646 CCTCTGCCGCCTCTATTGTA 58.959 55.000 0.00 0.00 0.00 2.41
2892 3769 1.620819 CCTCTGCCGCCTCTATTGTAT 59.379 52.381 0.00 0.00 0.00 2.29
2893 3770 2.037772 CCTCTGCCGCCTCTATTGTATT 59.962 50.000 0.00 0.00 0.00 1.89
2894 3771 3.495100 CCTCTGCCGCCTCTATTGTATTT 60.495 47.826 0.00 0.00 0.00 1.40
2895 3772 4.262463 CCTCTGCCGCCTCTATTGTATTTA 60.262 45.833 0.00 0.00 0.00 1.40
2896 3773 5.284861 TCTGCCGCCTCTATTGTATTTAA 57.715 39.130 0.00 0.00 0.00 1.52
2897 3774 5.865085 TCTGCCGCCTCTATTGTATTTAAT 58.135 37.500 0.00 0.00 0.00 1.40
2898 3775 6.296026 TCTGCCGCCTCTATTGTATTTAATT 58.704 36.000 0.00 0.00 0.00 1.40
2899 3776 6.204688 TCTGCCGCCTCTATTGTATTTAATTG 59.795 38.462 0.00 0.00 0.00 2.32
2900 3777 5.240623 TGCCGCCTCTATTGTATTTAATTGG 59.759 40.000 0.00 0.00 0.00 3.16
2901 3778 5.472137 GCCGCCTCTATTGTATTTAATTGGA 59.528 40.000 0.00 0.00 0.00 3.53
2902 3779 6.348540 GCCGCCTCTATTGTATTTAATTGGAG 60.349 42.308 0.00 0.00 0.00 3.86
2903 3780 6.934645 CCGCCTCTATTGTATTTAATTGGAGA 59.065 38.462 0.00 0.00 0.00 3.71
2904 3781 7.444183 CCGCCTCTATTGTATTTAATTGGAGAA 59.556 37.037 0.00 0.00 0.00 2.87
2905 3782 8.499162 CGCCTCTATTGTATTTAATTGGAGAAG 58.501 37.037 0.00 0.00 0.00 2.85
2906 3783 9.561069 GCCTCTATTGTATTTAATTGGAGAAGA 57.439 33.333 0.00 0.00 0.00 2.87
2918 3795 9.928618 TTTAATTGGAGAAGAGAGATAGAGAGA 57.071 33.333 0.00 0.00 0.00 3.10
2919 3796 9.928618 TTAATTGGAGAAGAGAGATAGAGAGAA 57.071 33.333 0.00 0.00 0.00 2.87
2920 3797 8.837099 AATTGGAGAAGAGAGATAGAGAGAAA 57.163 34.615 0.00 0.00 0.00 2.52
2921 3798 8.837099 ATTGGAGAAGAGAGATAGAGAGAAAA 57.163 34.615 0.00 0.00 0.00 2.29
2922 3799 8.837099 TTGGAGAAGAGAGATAGAGAGAAAAT 57.163 34.615 0.00 0.00 0.00 1.82
2923 3800 8.837099 TGGAGAAGAGAGATAGAGAGAAAATT 57.163 34.615 0.00 0.00 0.00 1.82
2924 3801 8.694540 TGGAGAAGAGAGATAGAGAGAAAATTG 58.305 37.037 0.00 0.00 0.00 2.32
2925 3802 8.912988 GGAGAAGAGAGATAGAGAGAAAATTGA 58.087 37.037 0.00 0.00 0.00 2.57
2962 3839 9.145865 GAACTTATAGACAATCTTATAGCCAGC 57.854 37.037 0.00 0.00 0.00 4.85
2963 3840 8.429237 ACTTATAGACAATCTTATAGCCAGCT 57.571 34.615 0.00 0.00 0.00 4.24
2964 3841 8.527810 ACTTATAGACAATCTTATAGCCAGCTC 58.472 37.037 0.00 0.00 0.00 4.09
2965 3842 6.924913 ATAGACAATCTTATAGCCAGCTCA 57.075 37.500 0.00 0.00 0.00 4.26
2966 3843 5.822132 AGACAATCTTATAGCCAGCTCAT 57.178 39.130 0.00 0.00 0.00 2.90
2967 3844 6.185114 AGACAATCTTATAGCCAGCTCATT 57.815 37.500 0.00 0.00 0.00 2.57
2968 3845 5.996513 AGACAATCTTATAGCCAGCTCATTG 59.003 40.000 0.00 1.71 0.00 2.82
2969 3846 5.688807 ACAATCTTATAGCCAGCTCATTGT 58.311 37.500 0.00 2.29 0.00 2.71
2970 3847 6.830912 ACAATCTTATAGCCAGCTCATTGTA 58.169 36.000 0.00 0.00 0.00 2.41
2971 3848 7.456725 ACAATCTTATAGCCAGCTCATTGTAT 58.543 34.615 0.00 0.00 0.00 2.29
2972 3849 8.597167 ACAATCTTATAGCCAGCTCATTGTATA 58.403 33.333 0.00 0.00 0.00 1.47
2973 3850 9.440773 CAATCTTATAGCCAGCTCATTGTATAA 57.559 33.333 0.00 0.00 0.00 0.98
2974 3851 9.664332 AATCTTATAGCCAGCTCATTGTATAAG 57.336 33.333 0.00 3.58 0.00 1.73
2975 3852 8.195165 TCTTATAGCCAGCTCATTGTATAAGT 57.805 34.615 13.39 0.00 31.72 2.24
2976 3853 9.309224 TCTTATAGCCAGCTCATTGTATAAGTA 57.691 33.333 13.39 3.51 31.72 2.24
2977 3854 9.579768 CTTATAGCCAGCTCATTGTATAAGTAG 57.420 37.037 0.00 0.00 0.00 2.57
2978 3855 5.878406 AGCCAGCTCATTGTATAAGTAGT 57.122 39.130 0.00 0.00 0.00 2.73
2979 3856 6.240549 AGCCAGCTCATTGTATAAGTAGTT 57.759 37.500 0.00 0.00 0.00 2.24
2980 3857 7.361457 AGCCAGCTCATTGTATAAGTAGTTA 57.639 36.000 0.00 0.00 0.00 2.24
2981 3858 7.792032 AGCCAGCTCATTGTATAAGTAGTTAA 58.208 34.615 0.00 0.00 0.00 2.01
2982 3859 8.432805 AGCCAGCTCATTGTATAAGTAGTTAAT 58.567 33.333 0.00 0.00 0.00 1.40
2983 3860 8.499162 GCCAGCTCATTGTATAAGTAGTTAATG 58.501 37.037 0.00 0.00 0.00 1.90
2984 3861 8.993121 CCAGCTCATTGTATAAGTAGTTAATGG 58.007 37.037 0.00 0.00 0.00 3.16
2985 3862 8.499162 CAGCTCATTGTATAAGTAGTTAATGGC 58.501 37.037 0.00 2.66 0.00 4.40
2986 3863 8.432805 AGCTCATTGTATAAGTAGTTAATGGCT 58.567 33.333 10.54 10.54 32.49 4.75
2987 3864 9.706691 GCTCATTGTATAAGTAGTTAATGGCTA 57.293 33.333 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
652 653 1.135139 CTCCTCGACGACCATGTGAAT 59.865 52.381 0.00 0.00 0.00 2.57
771 1471 1.178534 TGCTGCAAAGGGCCTTGTAC 61.179 55.000 21.72 12.80 43.89 2.90
790 1490 3.292492 AACCTTCTTTTCGTCCCTTGT 57.708 42.857 0.00 0.00 0.00 3.16
838 1538 6.992063 ATGAAAGCACTTGATAGAATTCGT 57.008 33.333 0.00 0.00 0.00 3.85
1267 1970 2.230660 CAAAGTCCTCCCAGTTGGAAC 58.769 52.381 0.00 0.00 44.57 3.62
1659 2362 5.336744 TCACAAAACACCGAGAAATTGTTC 58.663 37.500 0.00 0.00 0.00 3.18
1666 2369 3.314080 GGATGTTCACAAAACACCGAGAA 59.686 43.478 0.00 0.00 32.37 2.87
1726 2429 2.035449 AGGTCGATGACACGAGTTTTGA 59.965 45.455 0.00 0.00 42.88 2.69
1856 2559 3.770388 ACCTACTAGCTCAAACTTCTCCC 59.230 47.826 0.00 0.00 0.00 4.30
1995 2698 9.300681 TCATCTAATGAAGAAAACCACATTCTT 57.699 29.630 1.43 1.43 46.81 2.52
2304 3180 0.613853 TTCCCCTAGAGTGACACGGG 60.614 60.000 8.75 8.75 34.62 5.28
2305 3181 1.263356 TTTCCCCTAGAGTGACACGG 58.737 55.000 0.00 0.00 0.00 4.94
2327 3204 2.492088 GCAACAGGGGTAAGAATTGACC 59.508 50.000 0.00 0.00 34.75 4.02
2338 3215 1.276622 CAGTACCTAGCAACAGGGGT 58.723 55.000 4.31 0.00 40.29 4.95
2339 3216 0.107654 GCAGTACCTAGCAACAGGGG 60.108 60.000 4.31 0.00 40.29 4.79
2340 3217 0.613260 TGCAGTACCTAGCAACAGGG 59.387 55.000 3.09 0.00 40.29 4.45
2370 3247 1.614903 CATTGAGGTGTGGTTGTGCAT 59.385 47.619 0.00 0.00 0.00 3.96
2397 3274 5.712917 ACGCCATGATAAAACCCTCTTTTTA 59.287 36.000 0.00 0.00 35.82 1.52
2421 3298 8.556194 GTCATTGCCATGATATCGTTACTTTAA 58.444 33.333 3.48 0.00 41.64 1.52
2426 3303 5.922739 TGTCATTGCCATGATATCGTTAC 57.077 39.130 3.48 0.00 41.64 2.50
2441 3318 6.909895 TCAACACTTCGTATTTGTTGTCATTG 59.090 34.615 12.13 0.00 46.70 2.82
2457 3334 1.860078 CGAGCGGGTTCAACACTTC 59.140 57.895 0.00 0.00 0.00 3.01
2477 3354 3.960102 TCTTGATTTGGTCCTGCTTTTGT 59.040 39.130 0.00 0.00 0.00 2.83
2485 3362 6.004574 GGTTCTAGTTTCTTGATTTGGTCCT 58.995 40.000 0.00 0.00 0.00 3.85
2495 3372 5.024118 TCTCCCCTAGGTTCTAGTTTCTTG 58.976 45.833 8.29 0.00 0.00 3.02
2496 3373 5.286760 TCTCCCCTAGGTTCTAGTTTCTT 57.713 43.478 8.29 0.00 0.00 2.52
2497 3374 4.969136 TCTCCCCTAGGTTCTAGTTTCT 57.031 45.455 8.29 0.00 0.00 2.52
2498 3375 5.163290 CCATTCTCCCCTAGGTTCTAGTTTC 60.163 48.000 8.29 0.00 0.00 2.78
2499 3376 4.722279 CCATTCTCCCCTAGGTTCTAGTTT 59.278 45.833 8.29 0.00 0.00 2.66
2500 3377 4.015541 TCCATTCTCCCCTAGGTTCTAGTT 60.016 45.833 8.29 0.00 0.00 2.24
2501 3378 3.536434 TCCATTCTCCCCTAGGTTCTAGT 59.464 47.826 8.29 0.00 0.00 2.57
2502 3379 4.156477 CTCCATTCTCCCCTAGGTTCTAG 58.844 52.174 8.29 0.00 0.00 2.43
2503 3380 3.694537 GCTCCATTCTCCCCTAGGTTCTA 60.695 52.174 8.29 0.00 0.00 2.10
2504 3381 2.961977 GCTCCATTCTCCCCTAGGTTCT 60.962 54.545 8.29 0.00 0.00 3.01
2505 3382 1.418264 GCTCCATTCTCCCCTAGGTTC 59.582 57.143 8.29 0.00 0.00 3.62
2506 3383 1.010170 AGCTCCATTCTCCCCTAGGTT 59.990 52.381 8.29 0.00 0.00 3.50
2507 3384 0.644937 AGCTCCATTCTCCCCTAGGT 59.355 55.000 8.29 0.00 0.00 3.08
2508 3385 1.132881 AGAGCTCCATTCTCCCCTAGG 60.133 57.143 10.93 0.06 0.00 3.02
2509 3386 2.247358 GAGAGCTCCATTCTCCCCTAG 58.753 57.143 10.93 0.00 36.01 3.02
2510 3387 1.575788 TGAGAGCTCCATTCTCCCCTA 59.424 52.381 10.93 0.00 40.26 3.53
2511 3388 0.341258 TGAGAGCTCCATTCTCCCCT 59.659 55.000 10.93 0.00 40.26 4.79
2512 3389 0.467804 GTGAGAGCTCCATTCTCCCC 59.532 60.000 10.93 0.00 40.26 4.81
2513 3390 1.138661 CTGTGAGAGCTCCATTCTCCC 59.861 57.143 10.93 0.00 40.26 4.30
2514 3391 1.473080 GCTGTGAGAGCTCCATTCTCC 60.473 57.143 10.93 0.00 45.21 3.71
2515 3392 1.802136 CGCTGTGAGAGCTCCATTCTC 60.802 57.143 10.93 1.02 46.64 2.87
2516 3393 0.175302 CGCTGTGAGAGCTCCATTCT 59.825 55.000 10.93 0.00 46.64 2.40
2517 3394 0.174389 TCGCTGTGAGAGCTCCATTC 59.826 55.000 10.93 1.86 46.64 2.67
2518 3395 0.829333 ATCGCTGTGAGAGCTCCATT 59.171 50.000 10.93 0.00 46.64 3.16
2519 3396 0.829333 AATCGCTGTGAGAGCTCCAT 59.171 50.000 10.93 0.00 46.64 3.41
2520 3397 1.406898 CTAATCGCTGTGAGAGCTCCA 59.593 52.381 10.93 5.38 46.64 3.86
2521 3398 1.867698 GCTAATCGCTGTGAGAGCTCC 60.868 57.143 10.93 2.40 46.64 4.70
2522 3399 1.486439 GCTAATCGCTGTGAGAGCTC 58.514 55.000 5.27 5.27 46.64 4.09
2523 3400 0.248825 CGCTAATCGCTGTGAGAGCT 60.249 55.000 19.49 0.00 46.64 4.09
2524 3401 0.248661 TCGCTAATCGCTGTGAGAGC 60.249 55.000 14.60 14.60 45.20 4.09
2525 3402 1.064803 AGTCGCTAATCGCTGTGAGAG 59.935 52.381 0.00 0.00 38.27 3.20
2526 3403 1.095600 AGTCGCTAATCGCTGTGAGA 58.904 50.000 0.00 0.00 38.27 3.27
2527 3404 2.032302 ACTAGTCGCTAATCGCTGTGAG 59.968 50.000 0.00 0.00 38.27 3.51
2528 3405 2.014857 ACTAGTCGCTAATCGCTGTGA 58.985 47.619 0.00 0.00 38.27 3.58
2529 3406 2.112522 CACTAGTCGCTAATCGCTGTG 58.887 52.381 0.00 0.00 38.27 3.66
2530 3407 1.065701 CCACTAGTCGCTAATCGCTGT 59.934 52.381 0.00 0.00 38.27 4.40
2531 3408 1.759994 CCACTAGTCGCTAATCGCTG 58.240 55.000 0.00 0.00 38.27 5.18
2532 3409 0.030908 GCCACTAGTCGCTAATCGCT 59.969 55.000 5.10 0.00 38.27 4.93
2533 3410 0.940047 GGCCACTAGTCGCTAATCGC 60.940 60.000 12.38 0.00 38.27 4.58
2534 3411 0.660595 CGGCCACTAGTCGCTAATCG 60.661 60.000 12.38 3.64 40.15 3.34
2535 3412 0.384669 ACGGCCACTAGTCGCTAATC 59.615 55.000 12.38 0.00 0.00 1.75
2536 3413 0.822164 AACGGCCACTAGTCGCTAAT 59.178 50.000 12.38 0.00 0.00 1.73
2537 3414 0.108992 CAACGGCCACTAGTCGCTAA 60.109 55.000 12.38 0.00 0.00 3.09
2538 3415 1.509463 CAACGGCCACTAGTCGCTA 59.491 57.895 12.38 0.00 0.00 4.26
2539 3416 2.261671 CAACGGCCACTAGTCGCT 59.738 61.111 12.38 0.00 0.00 4.93
2540 3417 2.573609 ATCCAACGGCCACTAGTCGC 62.574 60.000 3.57 3.57 0.00 5.19
2541 3418 0.742505 TATCCAACGGCCACTAGTCG 59.257 55.000 2.24 0.00 0.00 4.18
2542 3419 1.755380 ACTATCCAACGGCCACTAGTC 59.245 52.381 2.24 0.00 0.00 2.59
2543 3420 1.861982 ACTATCCAACGGCCACTAGT 58.138 50.000 2.24 0.00 0.00 2.57
2544 3421 2.981859 AACTATCCAACGGCCACTAG 57.018 50.000 2.24 0.00 0.00 2.57
2545 3422 3.340034 CAAAACTATCCAACGGCCACTA 58.660 45.455 2.24 0.00 0.00 2.74
2546 3423 2.159382 CAAAACTATCCAACGGCCACT 58.841 47.619 2.24 0.00 0.00 4.00
2547 3424 1.402325 GCAAAACTATCCAACGGCCAC 60.402 52.381 2.24 0.00 0.00 5.01
2548 3425 0.885196 GCAAAACTATCCAACGGCCA 59.115 50.000 2.24 0.00 0.00 5.36
2549 3426 1.173913 AGCAAAACTATCCAACGGCC 58.826 50.000 0.00 0.00 0.00 6.13
2550 3427 2.227865 TCAAGCAAAACTATCCAACGGC 59.772 45.455 0.00 0.00 0.00 5.68
2551 3428 4.414852 CATCAAGCAAAACTATCCAACGG 58.585 43.478 0.00 0.00 0.00 4.44
2552 3429 3.853671 GCATCAAGCAAAACTATCCAACG 59.146 43.478 0.00 0.00 44.79 4.10
2553 3430 3.853671 CGCATCAAGCAAAACTATCCAAC 59.146 43.478 0.00 0.00 46.13 3.77
2554 3431 3.755905 TCGCATCAAGCAAAACTATCCAA 59.244 39.130 0.00 0.00 46.13 3.53
2555 3432 3.342719 TCGCATCAAGCAAAACTATCCA 58.657 40.909 0.00 0.00 46.13 3.41
2556 3433 4.531332 GATCGCATCAAGCAAAACTATCC 58.469 43.478 0.00 0.00 46.13 2.59
2557 3434 4.531332 GGATCGCATCAAGCAAAACTATC 58.469 43.478 0.00 0.00 46.13 2.08
2558 3435 3.002656 CGGATCGCATCAAGCAAAACTAT 59.997 43.478 0.00 0.00 46.13 2.12
2559 3436 2.351418 CGGATCGCATCAAGCAAAACTA 59.649 45.455 0.00 0.00 46.13 2.24
2560 3437 1.131126 CGGATCGCATCAAGCAAAACT 59.869 47.619 0.00 0.00 46.13 2.66
2561 3438 1.538276 CGGATCGCATCAAGCAAAAC 58.462 50.000 0.00 0.00 46.13 2.43
2562 3439 0.451383 CCGGATCGCATCAAGCAAAA 59.549 50.000 0.00 0.00 46.13 2.44
2563 3440 1.375853 CCCGGATCGCATCAAGCAAA 61.376 55.000 0.73 0.00 46.13 3.68
2564 3441 1.819208 CCCGGATCGCATCAAGCAA 60.819 57.895 0.73 0.00 46.13 3.91
2565 3442 2.203056 CCCGGATCGCATCAAGCA 60.203 61.111 0.73 0.00 46.13 3.91
2566 3443 3.654020 GCCCGGATCGCATCAAGC 61.654 66.667 0.73 0.00 40.87 4.01
2567 3444 2.974698 GGCCCGGATCGCATCAAG 60.975 66.667 0.73 0.00 0.00 3.02
2568 3445 4.908687 CGGCCCGGATCGCATCAA 62.909 66.667 0.73 0.00 0.00 2.57
2581 3458 4.467084 TGGCTTGATCCGACGGCC 62.467 66.667 9.66 6.29 42.73 6.13
2582 3459 3.195698 GTGGCTTGATCCGACGGC 61.196 66.667 9.66 0.00 0.00 5.68
2583 3460 2.511600 GGTGGCTTGATCCGACGG 60.512 66.667 7.84 7.84 0.00 4.79
2584 3461 2.885644 CGGTGGCTTGATCCGACG 60.886 66.667 0.00 0.00 46.05 5.12
2585 3462 2.311688 ATCCGGTGGCTTGATCCGAC 62.312 60.000 0.00 0.00 46.05 4.79
2586 3463 2.063979 ATCCGGTGGCTTGATCCGA 61.064 57.895 0.00 0.00 46.05 4.55
2587 3464 1.889105 CATCCGGTGGCTTGATCCG 60.889 63.158 0.00 0.00 43.30 4.18
2588 3465 0.815615 GTCATCCGGTGGCTTGATCC 60.816 60.000 0.00 0.00 0.00 3.36
2589 3466 0.815615 GGTCATCCGGTGGCTTGATC 60.816 60.000 0.00 0.00 31.47 2.92
2590 3467 1.224592 GGTCATCCGGTGGCTTGAT 59.775 57.895 0.00 0.00 31.47 2.57
2591 3468 1.899437 GAGGTCATCCGGTGGCTTGA 61.899 60.000 0.00 0.00 39.05 3.02
2592 3469 1.450312 GAGGTCATCCGGTGGCTTG 60.450 63.158 0.00 0.00 39.05 4.01
2593 3470 2.990479 GAGGTCATCCGGTGGCTT 59.010 61.111 0.00 0.00 39.05 4.35
2594 3471 3.461773 CGAGGTCATCCGGTGGCT 61.462 66.667 0.00 0.00 39.05 4.75
2595 3472 4.530857 CCGAGGTCATCCGGTGGC 62.531 72.222 0.00 0.00 40.78 5.01
2596 3473 4.530857 GCCGAGGTCATCCGGTGG 62.531 72.222 0.00 0.00 46.84 4.61
2597 3474 3.461773 AGCCGAGGTCATCCGGTG 61.462 66.667 0.00 0.00 46.84 4.94
2598 3475 3.461773 CAGCCGAGGTCATCCGGT 61.462 66.667 0.00 0.00 46.84 5.28
2600 3477 2.105128 GACAGCCGAGGTCATCCG 59.895 66.667 0.00 0.00 39.05 4.18
2601 3478 2.105128 CGACAGCCGAGGTCATCC 59.895 66.667 0.00 0.00 41.76 3.51
2602 3479 1.739338 ATCCGACAGCCGAGGTCATC 61.739 60.000 0.00 0.00 41.76 2.92
2603 3480 1.739338 GATCCGACAGCCGAGGTCAT 61.739 60.000 0.00 0.00 41.76 3.06
2604 3481 2.362503 ATCCGACAGCCGAGGTCA 60.363 61.111 0.00 0.00 41.76 4.02
2605 3482 2.413765 GATCCGACAGCCGAGGTC 59.586 66.667 0.00 0.00 41.76 3.85
2606 3483 3.518998 CGATCCGACAGCCGAGGT 61.519 66.667 0.00 0.00 41.76 3.85
2607 3484 2.669808 CTTCGATCCGACAGCCGAGG 62.670 65.000 0.00 0.00 41.76 4.63
2608 3485 1.298713 CTTCGATCCGACAGCCGAG 60.299 63.158 0.00 0.00 41.76 4.63
2609 3486 1.715862 CTCTTCGATCCGACAGCCGA 61.716 60.000 0.00 0.00 41.76 5.54
2610 3487 1.298713 CTCTTCGATCCGACAGCCG 60.299 63.158 0.00 0.00 34.89 5.52
2611 3488 1.066587 CCTCTTCGATCCGACAGCC 59.933 63.158 0.00 0.00 34.89 4.85
2612 3489 0.030101 CTCCTCTTCGATCCGACAGC 59.970 60.000 0.00 0.00 34.89 4.40
2613 3490 0.665835 CCTCCTCTTCGATCCGACAG 59.334 60.000 0.00 0.00 34.89 3.51
2614 3491 1.384989 GCCTCCTCTTCGATCCGACA 61.385 60.000 0.00 0.00 34.89 4.35
2615 3492 1.360911 GCCTCCTCTTCGATCCGAC 59.639 63.158 0.00 0.00 34.89 4.79
2616 3493 1.076995 TGCCTCCTCTTCGATCCGA 60.077 57.895 0.00 0.00 0.00 4.55
2617 3494 1.066587 GTGCCTCCTCTTCGATCCG 59.933 63.158 0.00 0.00 0.00 4.18
2618 3495 1.693627 TAGTGCCTCCTCTTCGATCC 58.306 55.000 0.00 0.00 0.00 3.36
2619 3496 3.648009 CAATAGTGCCTCCTCTTCGATC 58.352 50.000 0.00 0.00 0.00 3.69
2620 3497 2.224161 GCAATAGTGCCTCCTCTTCGAT 60.224 50.000 3.16 0.00 45.68 3.59
2621 3498 1.137086 GCAATAGTGCCTCCTCTTCGA 59.863 52.381 3.16 0.00 45.68 3.71
2622 3499 1.576356 GCAATAGTGCCTCCTCTTCG 58.424 55.000 3.16 0.00 45.68 3.79
2628 3505 7.945093 GAAACTATTCATTGCAATAGTGCCTCC 60.945 40.741 12.53 0.00 45.14 4.30
2629 3506 6.914757 GAAACTATTCATTGCAATAGTGCCTC 59.085 38.462 12.53 6.50 45.14 4.70
2630 3507 6.377996 TGAAACTATTCATTGCAATAGTGCCT 59.622 34.615 12.53 0.00 45.14 4.75
2631 3508 6.563422 TGAAACTATTCATTGCAATAGTGCC 58.437 36.000 12.53 8.01 45.14 5.01
2632 3509 7.441878 GTGAAACTATTCATTGCAATAGTGC 57.558 36.000 12.53 8.51 45.14 4.40
2667 3544 0.872388 GACGGTGGCACGAGATTTTT 59.128 50.000 12.17 0.00 37.61 1.94
2668 3545 0.250124 TGACGGTGGCACGAGATTTT 60.250 50.000 12.17 0.00 37.61 1.82
2669 3546 0.036388 ATGACGGTGGCACGAGATTT 60.036 50.000 12.17 0.00 37.61 2.17
2670 3547 0.036388 AATGACGGTGGCACGAGATT 60.036 50.000 12.17 4.43 37.61 2.40
2671 3548 0.821517 TAATGACGGTGGCACGAGAT 59.178 50.000 12.17 0.00 37.61 2.75
2672 3549 0.821517 ATAATGACGGTGGCACGAGA 59.178 50.000 12.17 0.00 37.61 4.04
2673 3550 1.651987 AATAATGACGGTGGCACGAG 58.348 50.000 12.17 10.76 37.61 4.18
2674 3551 2.102070 AAATAATGACGGTGGCACGA 57.898 45.000 12.17 0.00 37.61 4.35
2675 3552 2.160615 TGAAAATAATGACGGTGGCACG 59.839 45.455 12.17 9.61 40.31 5.34
2676 3553 3.840890 TGAAAATAATGACGGTGGCAC 57.159 42.857 9.70 9.70 0.00 5.01
2677 3554 3.428725 GCATGAAAATAATGACGGTGGCA 60.429 43.478 0.00 0.00 0.00 4.92
2678 3555 3.115554 GCATGAAAATAATGACGGTGGC 58.884 45.455 0.00 0.00 0.00 5.01
2679 3556 3.130164 TGGCATGAAAATAATGACGGTGG 59.870 43.478 0.00 0.00 35.68 4.61
2680 3557 4.104776 GTGGCATGAAAATAATGACGGTG 58.895 43.478 0.00 0.00 35.68 4.94
2681 3558 3.181501 CGTGGCATGAAAATAATGACGGT 60.182 43.478 0.00 0.00 35.68 4.83
2682 3559 3.362295 CGTGGCATGAAAATAATGACGG 58.638 45.455 0.00 0.00 35.68 4.79
2683 3560 2.783284 GCGTGGCATGAAAATAATGACG 59.217 45.455 11.71 0.00 35.68 4.35
2684 3561 3.115554 GGCGTGGCATGAAAATAATGAC 58.884 45.455 11.71 0.00 33.33 3.06
2685 3562 2.223456 CGGCGTGGCATGAAAATAATGA 60.223 45.455 11.71 0.00 0.00 2.57
2686 3563 2.118683 CGGCGTGGCATGAAAATAATG 58.881 47.619 11.71 0.00 0.00 1.90
2687 3564 2.020720 TCGGCGTGGCATGAAAATAAT 58.979 42.857 11.71 0.00 0.00 1.28
2688 3565 1.400142 CTCGGCGTGGCATGAAAATAA 59.600 47.619 11.71 0.00 0.00 1.40
2689 3566 1.013596 CTCGGCGTGGCATGAAAATA 58.986 50.000 11.71 0.00 0.00 1.40
2690 3567 1.656818 CCTCGGCGTGGCATGAAAAT 61.657 55.000 15.64 0.00 0.00 1.82
2691 3568 2.331893 CCTCGGCGTGGCATGAAAA 61.332 57.895 15.64 0.00 0.00 2.29
2692 3569 2.745884 CCTCGGCGTGGCATGAAA 60.746 61.111 15.64 0.00 0.00 2.69
2693 3570 4.776322 CCCTCGGCGTGGCATGAA 62.776 66.667 21.83 0.00 0.00 2.57
2699 3576 2.593436 AAAACACCCTCGGCGTGG 60.593 61.111 20.44 20.44 35.46 4.94
2700 3577 2.943653 GAAAACACCCTCGGCGTG 59.056 61.111 6.85 3.87 37.26 5.34
2701 3578 2.663852 CGAAAACACCCTCGGCGT 60.664 61.111 6.85 0.00 0.00 5.68
2702 3579 2.663852 ACGAAAACACCCTCGGCG 60.664 61.111 0.00 0.00 39.38 6.46
2703 3580 0.883370 AAGACGAAAACACCCTCGGC 60.883 55.000 0.00 0.00 43.64 5.54
2704 3581 1.589803 AAAGACGAAAACACCCTCGG 58.410 50.000 0.00 0.00 39.38 4.63
2705 3582 2.610374 TGAAAAGACGAAAACACCCTCG 59.390 45.455 0.00 0.00 40.87 4.63
2706 3583 3.375922 TGTGAAAAGACGAAAACACCCTC 59.624 43.478 0.00 0.00 0.00 4.30
2707 3584 3.349022 TGTGAAAAGACGAAAACACCCT 58.651 40.909 0.00 0.00 0.00 4.34
2708 3585 3.768468 TGTGAAAAGACGAAAACACCC 57.232 42.857 0.00 0.00 0.00 4.61
2709 3586 4.668289 ACATGTGAAAAGACGAAAACACC 58.332 39.130 0.00 0.00 0.00 4.16
2710 3587 5.907391 CCTACATGTGAAAAGACGAAAACAC 59.093 40.000 9.11 0.00 0.00 3.32
2711 3588 5.587043 ACCTACATGTGAAAAGACGAAAACA 59.413 36.000 9.11 0.00 0.00 2.83
2712 3589 6.056428 ACCTACATGTGAAAAGACGAAAAC 57.944 37.500 9.11 0.00 0.00 2.43
2713 3590 7.972832 ATACCTACATGTGAAAAGACGAAAA 57.027 32.000 9.11 0.00 0.00 2.29
2727 3604 9.973450 GGAGATGTTGCTATATATACCTACATG 57.027 37.037 15.47 0.00 0.00 3.21
2728 3605 9.148879 GGGAGATGTTGCTATATATACCTACAT 57.851 37.037 12.23 12.23 0.00 2.29
2729 3606 7.284716 CGGGAGATGTTGCTATATATACCTACA 59.715 40.741 5.25 5.25 0.00 2.74
2730 3607 7.284944 ACGGGAGATGTTGCTATATATACCTAC 59.715 40.741 0.00 0.00 0.00 3.18
2731 3608 7.351952 ACGGGAGATGTTGCTATATATACCTA 58.648 38.462 0.00 0.00 0.00 3.08
2732 3609 6.195700 ACGGGAGATGTTGCTATATATACCT 58.804 40.000 0.00 0.00 0.00 3.08
2733 3610 6.466885 ACGGGAGATGTTGCTATATATACC 57.533 41.667 0.00 0.00 0.00 2.73
2734 3611 8.447924 TCTACGGGAGATGTTGCTATATATAC 57.552 38.462 0.00 0.00 0.00 1.47
2735 3612 8.491958 TCTCTACGGGAGATGTTGCTATATATA 58.508 37.037 6.32 0.00 45.20 0.86
2736 3613 7.347252 TCTCTACGGGAGATGTTGCTATATAT 58.653 38.462 6.32 0.00 45.20 0.86
2737 3614 6.718294 TCTCTACGGGAGATGTTGCTATATA 58.282 40.000 6.32 0.00 45.20 0.86
2738 3615 5.571285 TCTCTACGGGAGATGTTGCTATAT 58.429 41.667 6.32 0.00 45.20 0.86
2739 3616 4.981812 TCTCTACGGGAGATGTTGCTATA 58.018 43.478 6.32 0.00 45.20 1.31
2740 3617 3.833732 TCTCTACGGGAGATGTTGCTAT 58.166 45.455 6.32 0.00 45.20 2.97
2741 3618 3.292492 TCTCTACGGGAGATGTTGCTA 57.708 47.619 6.32 0.00 45.20 3.49
2742 3619 2.145397 TCTCTACGGGAGATGTTGCT 57.855 50.000 6.32 0.00 45.20 3.91
2750 3627 0.885596 CGGCTAGGTCTCTACGGGAG 60.886 65.000 0.00 1.90 43.12 4.30
2751 3628 1.147824 CGGCTAGGTCTCTACGGGA 59.852 63.158 0.00 0.00 0.00 5.14
2752 3629 2.553727 GCGGCTAGGTCTCTACGGG 61.554 68.421 0.00 0.00 0.00 5.28
2753 3630 2.553727 GGCGGCTAGGTCTCTACGG 61.554 68.421 0.00 0.00 0.00 4.02
2754 3631 1.508808 GAGGCGGCTAGGTCTCTACG 61.509 65.000 13.24 0.00 35.77 3.51
2755 3632 1.174078 GGAGGCGGCTAGGTCTCTAC 61.174 65.000 13.24 0.00 38.69 2.59
2756 3633 1.150992 GGAGGCGGCTAGGTCTCTA 59.849 63.158 13.24 0.00 38.69 2.43
2757 3634 2.123640 GGAGGCGGCTAGGTCTCT 60.124 66.667 13.24 0.00 38.69 3.10
2758 3635 2.123640 AGGAGGCGGCTAGGTCTC 60.124 66.667 13.24 0.00 37.93 3.36
2759 3636 2.123640 GAGGAGGCGGCTAGGTCT 60.124 66.667 13.24 7.43 0.00 3.85
2760 3637 3.228017 GGAGGAGGCGGCTAGGTC 61.228 72.222 13.24 8.87 0.00 3.85
2761 3638 3.742248 GAGGAGGAGGCGGCTAGGT 62.742 68.421 13.24 0.00 0.00 3.08
2762 3639 2.915137 GAGGAGGAGGCGGCTAGG 60.915 72.222 13.24 0.00 0.00 3.02
2763 3640 2.915137 GGAGGAGGAGGCGGCTAG 60.915 72.222 13.24 0.00 0.00 3.42
2764 3641 4.541648 GGGAGGAGGAGGCGGCTA 62.542 72.222 13.24 0.00 0.00 3.93
2767 3644 4.150454 AGAGGGAGGAGGAGGCGG 62.150 72.222 0.00 0.00 0.00 6.13
2768 3645 2.520741 GAGAGGGAGGAGGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
2769 3646 2.123033 GGAGAGGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
2770 3647 1.541672 GAGGAGAGGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2771 3648 1.150536 CGAGGAGAGGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
2772 3649 3.063197 GCGAGGAGAGGGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
2773 3650 2.520741 GCGAGGAGAGGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
2774 3651 2.904866 CGCGAGGAGAGGGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
2799 3676 3.471806 GAGGGTTCGGAGGGAGGC 61.472 72.222 0.00 0.00 0.00 4.70
2800 3677 2.930777 ATCGAGGGTTCGGAGGGAGG 62.931 65.000 0.00 0.00 46.67 4.30
2801 3678 1.455959 ATCGAGGGTTCGGAGGGAG 60.456 63.158 0.00 0.00 46.67 4.30
2802 3679 1.455217 GATCGAGGGTTCGGAGGGA 60.455 63.158 0.00 0.00 46.67 4.20
2803 3680 2.499827 GGATCGAGGGTTCGGAGGG 61.500 68.421 0.00 0.00 46.67 4.30
2804 3681 2.846652 CGGATCGAGGGTTCGGAGG 61.847 68.421 0.00 0.00 46.67 4.30
2805 3682 2.722487 CGGATCGAGGGTTCGGAG 59.278 66.667 0.00 0.00 46.67 4.63
2806 3683 3.524606 GCGGATCGAGGGTTCGGA 61.525 66.667 0.00 0.00 46.67 4.55
2807 3684 4.925576 CGCGGATCGAGGGTTCGG 62.926 72.222 0.00 0.00 46.67 4.30
2838 3715 4.552365 AGATGATGGCGGCGTGGG 62.552 66.667 9.10 0.00 0.00 4.61
2839 3716 2.969238 GAGATGATGGCGGCGTGG 60.969 66.667 9.10 0.00 0.00 4.94
2840 3717 2.969238 GGAGATGATGGCGGCGTG 60.969 66.667 9.10 0.00 0.00 5.34
2841 3718 4.592192 CGGAGATGATGGCGGCGT 62.592 66.667 9.37 2.02 0.00 5.68
2869 3746 1.118356 AATAGAGGCGGCAGAGGAGG 61.118 60.000 13.08 0.00 0.00 4.30
2870 3747 0.033228 CAATAGAGGCGGCAGAGGAG 59.967 60.000 13.08 0.00 0.00 3.69
2871 3748 0.687757 ACAATAGAGGCGGCAGAGGA 60.688 55.000 13.08 0.00 0.00 3.71
2872 3749 1.040646 TACAATAGAGGCGGCAGAGG 58.959 55.000 13.08 0.00 0.00 3.69
2873 3750 3.393089 AATACAATAGAGGCGGCAGAG 57.607 47.619 13.08 0.00 0.00 3.35
2874 3751 3.838244 AAATACAATAGAGGCGGCAGA 57.162 42.857 13.08 0.00 0.00 4.26
2875 3752 6.373779 CAATTAAATACAATAGAGGCGGCAG 58.626 40.000 13.08 0.00 0.00 4.85
2876 3753 5.240623 CCAATTAAATACAATAGAGGCGGCA 59.759 40.000 13.08 0.00 0.00 5.69
2877 3754 5.472137 TCCAATTAAATACAATAGAGGCGGC 59.528 40.000 0.00 0.00 0.00 6.53
2878 3755 6.934645 TCTCCAATTAAATACAATAGAGGCGG 59.065 38.462 0.00 0.00 0.00 6.13
2879 3756 7.962964 TCTCCAATTAAATACAATAGAGGCG 57.037 36.000 0.00 0.00 0.00 5.52
2880 3757 9.561069 TCTTCTCCAATTAAATACAATAGAGGC 57.439 33.333 0.00 0.00 0.00 4.70
2892 3769 9.928618 TCTCTCTATCTCTCTTCTCCAATTAAA 57.071 33.333 0.00 0.00 0.00 1.52
2893 3770 9.928618 TTCTCTCTATCTCTCTTCTCCAATTAA 57.071 33.333 0.00 0.00 0.00 1.40
2894 3771 9.928618 TTTCTCTCTATCTCTCTTCTCCAATTA 57.071 33.333 0.00 0.00 0.00 1.40
2895 3772 8.837099 TTTCTCTCTATCTCTCTTCTCCAATT 57.163 34.615 0.00 0.00 0.00 2.32
2896 3773 8.837099 TTTTCTCTCTATCTCTCTTCTCCAAT 57.163 34.615 0.00 0.00 0.00 3.16
2897 3774 8.837099 ATTTTCTCTCTATCTCTCTTCTCCAA 57.163 34.615 0.00 0.00 0.00 3.53
2898 3775 8.694540 CAATTTTCTCTCTATCTCTCTTCTCCA 58.305 37.037 0.00 0.00 0.00 3.86
2899 3776 8.912988 TCAATTTTCTCTCTATCTCTCTTCTCC 58.087 37.037 0.00 0.00 0.00 3.71
2936 3813 9.145865 GCTGGCTATAAGATTGTCTATAAGTTC 57.854 37.037 0.00 0.00 0.00 3.01
2937 3814 8.875168 AGCTGGCTATAAGATTGTCTATAAGTT 58.125 33.333 0.00 0.00 0.00 2.66
2938 3815 8.429237 AGCTGGCTATAAGATTGTCTATAAGT 57.571 34.615 0.00 0.00 0.00 2.24
2939 3816 8.526978 TGAGCTGGCTATAAGATTGTCTATAAG 58.473 37.037 0.00 0.00 0.00 1.73
2940 3817 8.422577 TGAGCTGGCTATAAGATTGTCTATAA 57.577 34.615 0.00 0.00 0.00 0.98
2941 3818 8.601047 ATGAGCTGGCTATAAGATTGTCTATA 57.399 34.615 0.00 0.00 0.00 1.31
2942 3819 6.924913 TGAGCTGGCTATAAGATTGTCTAT 57.075 37.500 0.00 0.00 0.00 1.98
2943 3820 6.924913 ATGAGCTGGCTATAAGATTGTCTA 57.075 37.500 0.00 0.00 0.00 2.59
2944 3821 5.822132 ATGAGCTGGCTATAAGATTGTCT 57.178 39.130 0.00 0.00 0.00 3.41
2945 3822 5.762218 ACAATGAGCTGGCTATAAGATTGTC 59.238 40.000 0.00 0.00 0.00 3.18
2946 3823 5.688807 ACAATGAGCTGGCTATAAGATTGT 58.311 37.500 0.00 0.00 0.00 2.71
2947 3824 7.918536 ATACAATGAGCTGGCTATAAGATTG 57.081 36.000 0.00 0.00 0.00 2.67
2948 3825 9.664332 CTTATACAATGAGCTGGCTATAAGATT 57.336 33.333 11.85 0.00 31.51 2.40
2949 3826 8.820831 ACTTATACAATGAGCTGGCTATAAGAT 58.179 33.333 19.01 7.81 33.17 2.40
2950 3827 8.195165 ACTTATACAATGAGCTGGCTATAAGA 57.805 34.615 19.01 0.00 33.17 2.10
2951 3828 9.579768 CTACTTATACAATGAGCTGGCTATAAG 57.420 37.037 14.10 14.10 34.34 1.73
2952 3829 9.090103 ACTACTTATACAATGAGCTGGCTATAA 57.910 33.333 0.00 0.00 0.00 0.98
2953 3830 8.651589 ACTACTTATACAATGAGCTGGCTATA 57.348 34.615 0.00 0.00 0.00 1.31
2954 3831 7.546250 ACTACTTATACAATGAGCTGGCTAT 57.454 36.000 0.00 0.00 0.00 2.97
2955 3832 6.978674 ACTACTTATACAATGAGCTGGCTA 57.021 37.500 0.00 0.00 0.00 3.93
2956 3833 5.878406 ACTACTTATACAATGAGCTGGCT 57.122 39.130 0.00 0.00 0.00 4.75
2957 3834 8.499162 CATTAACTACTTATACAATGAGCTGGC 58.501 37.037 0.00 0.00 0.00 4.85
2958 3835 8.993121 CCATTAACTACTTATACAATGAGCTGG 58.007 37.037 0.00 0.00 0.00 4.85
2959 3836 8.499162 GCCATTAACTACTTATACAATGAGCTG 58.501 37.037 0.00 0.00 0.00 4.24
2960 3837 8.432805 AGCCATTAACTACTTATACAATGAGCT 58.567 33.333 0.00 0.00 31.29 4.09
2961 3838 8.608844 AGCCATTAACTACTTATACAATGAGC 57.391 34.615 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.