Multiple sequence alignment - TraesCS6D01G384000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G384000 chr6D 100.000 3645 0 0 1531 5175 462603313 462606957 0.000000e+00 6732
1 TraesCS6D01G384000 chr6D 100.000 1194 0 0 1 1194 462601783 462602976 0.000000e+00 2206
2 TraesCS6D01G384000 chr6B 95.206 2211 76 9 2317 4523 705284006 705286190 0.000000e+00 3469
3 TraesCS6D01G384000 chr6B 95.518 647 21 4 249 888 705281868 705282513 0.000000e+00 1027
4 TraesCS6D01G384000 chr6B 92.917 480 22 1 1542 2021 705283116 705283583 0.000000e+00 688
5 TraesCS6D01G384000 chr6B 95.860 314 7 1 887 1194 705282579 705282892 2.150000e-138 503
6 TraesCS6D01G384000 chr6B 96.233 292 11 0 2033 2324 705283565 705283856 3.620000e-131 479
7 TraesCS6D01G384000 chr6B 96.441 281 6 2 4898 5175 705286988 705287267 1.310000e-125 460
8 TraesCS6D01G384000 chr6B 93.116 276 13 4 4627 4902 705286188 705286457 2.900000e-107 399
9 TraesCS6D01G384000 chr6A 93.741 719 39 3 3591 4306 609416576 609417291 0.000000e+00 1074
10 TraesCS6D01G384000 chr5B 96.020 201 5 2 1542 1740 21706557 21706756 1.800000e-84 324
11 TraesCS6D01G384000 chr5B 92.143 140 2 4 1064 1194 21705964 21706103 6.840000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G384000 chr6D 462601783 462606957 5174 False 4469.000000 6732 100.000000 1 5175 2 chr6D.!!$F1 5174
1 TraesCS6D01G384000 chr6B 705281868 705287267 5399 False 1003.571429 3469 95.041571 249 5175 7 chr6B.!!$F1 4926
2 TraesCS6D01G384000 chr6A 609416576 609417291 715 False 1074.000000 1074 93.741000 3591 4306 1 chr6A.!!$F1 715
3 TraesCS6D01G384000 chr5B 21705964 21706756 792 False 256.500000 324 94.081500 1064 1740 2 chr5B.!!$F1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.036875 GGAGGAGGACCACACCTTTG 59.963 60.0 6.40 0.0 40.73 2.77 F
256 257 0.108329 AGCCAACCCTTACATCGACG 60.108 55.0 0.00 0.0 0.00 5.12 F
1837 2048 0.107945 CTTCGGAGAAGGCCTTGAGG 60.108 60.0 26.25 10.6 45.90 3.86 F
3074 3445 0.792640 CCGATGTTGCAGTGTCTGAC 59.207 55.0 0.00 0.0 32.44 3.51 F
3361 3732 0.326264 AGTGACAAGGAGGGATGTGC 59.674 55.0 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 1957 0.110104 CTGGGATCTCCAATCCAGCC 59.890 60.0 6.42 0.0 46.51 4.85 R
1903 2114 0.332293 TGGGCCTCATGCATCTGAAA 59.668 50.0 4.53 0.0 43.89 2.69 R
3310 3681 0.250295 ACCATGTTCAGTCACCACCG 60.250 55.0 0.00 0.0 0.00 4.94 R
4118 4490 0.036010 ACAGTCATCGAAAGGCCCTG 60.036 55.0 0.00 0.0 0.00 4.45 R
4998 5910 0.108041 GGGGACCGCTTTCGTAATCA 60.108 55.0 0.24 0.0 40.86 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.753043 TCTACGCAGACCCGGACC 60.753 66.667 0.73 0.00 0.00 4.46
18 19 3.834799 CTACGCAGACCCGGACCC 61.835 72.222 0.73 0.00 0.00 4.46
22 23 4.452733 GCAGACCCGGACCCGAAG 62.453 72.222 10.42 3.56 42.83 3.79
23 24 2.678934 CAGACCCGGACCCGAAGA 60.679 66.667 10.42 0.00 42.83 2.87
24 25 2.058595 CAGACCCGGACCCGAAGAT 61.059 63.158 10.42 0.00 42.83 2.40
25 26 2.058595 AGACCCGGACCCGAAGATG 61.059 63.158 10.42 0.00 42.83 2.90
26 27 2.038329 ACCCGGACCCGAAGATGA 59.962 61.111 10.42 0.00 42.83 2.92
27 28 2.017559 GACCCGGACCCGAAGATGAG 62.018 65.000 10.42 0.00 42.83 2.90
28 29 2.107141 CCGGACCCGAAGATGAGC 59.893 66.667 10.42 0.00 42.83 4.26
29 30 2.278857 CGGACCCGAAGATGAGCG 60.279 66.667 1.54 0.00 42.83 5.03
30 31 2.771639 CGGACCCGAAGATGAGCGA 61.772 63.158 1.54 0.00 42.83 4.93
31 32 1.227002 GGACCCGAAGATGAGCGAC 60.227 63.158 0.00 0.00 0.00 5.19
32 33 1.668101 GGACCCGAAGATGAGCGACT 61.668 60.000 0.00 0.00 0.00 4.18
33 34 0.248702 GACCCGAAGATGAGCGACTC 60.249 60.000 0.00 0.00 0.00 3.36
34 35 1.298713 CCCGAAGATGAGCGACTCG 60.299 63.158 0.00 0.00 32.35 4.18
35 36 1.298713 CCGAAGATGAGCGACTCGG 60.299 63.158 0.00 0.00 32.35 4.63
36 37 1.941734 CGAAGATGAGCGACTCGGC 60.942 63.158 0.00 0.00 32.35 5.54
37 38 1.590259 GAAGATGAGCGACTCGGCC 60.590 63.158 0.00 0.00 32.35 6.13
38 39 2.284798 GAAGATGAGCGACTCGGCCA 62.285 60.000 2.24 0.00 32.35 5.36
39 40 2.564553 AAGATGAGCGACTCGGCCAC 62.565 60.000 2.24 0.00 32.35 5.01
40 41 4.148825 ATGAGCGACTCGGCCACC 62.149 66.667 2.24 0.00 32.35 4.61
42 43 3.138798 GAGCGACTCGGCCACCTA 61.139 66.667 2.24 0.00 0.00 3.08
43 44 3.127352 GAGCGACTCGGCCACCTAG 62.127 68.421 2.24 0.00 0.00 3.02
44 45 4.874977 GCGACTCGGCCACCTAGC 62.875 72.222 2.24 0.00 0.00 3.42
45 46 3.141488 CGACTCGGCCACCTAGCT 61.141 66.667 2.24 0.00 0.00 3.32
46 47 2.809010 GACTCGGCCACCTAGCTC 59.191 66.667 2.24 0.00 0.00 4.09
47 48 3.127352 GACTCGGCCACCTAGCTCG 62.127 68.421 2.24 0.00 0.00 5.03
48 49 3.141488 CTCGGCCACCTAGCTCGT 61.141 66.667 2.24 0.00 0.00 4.18
49 50 3.127352 CTCGGCCACCTAGCTCGTC 62.127 68.421 2.24 0.00 0.00 4.20
50 51 3.449227 CGGCCACCTAGCTCGTCA 61.449 66.667 2.24 0.00 0.00 4.35
51 52 2.496817 GGCCACCTAGCTCGTCAG 59.503 66.667 0.00 0.00 0.00 3.51
68 69 2.489751 GCATTGGCGGTAACCAGC 59.510 61.111 0.00 0.00 41.82 4.85
69 70 2.046285 GCATTGGCGGTAACCAGCT 61.046 57.895 0.00 0.00 41.82 4.24
70 71 0.746563 GCATTGGCGGTAACCAGCTA 60.747 55.000 0.00 0.00 41.82 3.32
71 72 1.299541 CATTGGCGGTAACCAGCTAG 58.700 55.000 0.00 0.00 41.82 3.42
72 73 0.909623 ATTGGCGGTAACCAGCTAGT 59.090 50.000 0.00 0.00 41.82 2.57
73 74 0.688487 TTGGCGGTAACCAGCTAGTT 59.312 50.000 2.39 2.39 41.82 2.24
74 75 0.688487 TGGCGGTAACCAGCTAGTTT 59.312 50.000 2.03 0.00 33.75 2.66
75 76 1.084289 GGCGGTAACCAGCTAGTTTG 58.916 55.000 2.03 0.00 0.00 2.93
76 77 1.084289 GCGGTAACCAGCTAGTTTGG 58.916 55.000 2.03 12.27 41.60 3.28
77 78 1.734163 CGGTAACCAGCTAGTTTGGG 58.266 55.000 16.60 0.00 40.11 4.12
78 79 1.677820 CGGTAACCAGCTAGTTTGGGG 60.678 57.143 16.60 0.00 40.11 4.96
79 80 1.631898 GGTAACCAGCTAGTTTGGGGA 59.368 52.381 16.60 4.60 40.11 4.81
80 81 2.355818 GGTAACCAGCTAGTTTGGGGAG 60.356 54.545 16.60 0.00 40.11 4.30
81 82 0.038310 AACCAGCTAGTTTGGGGAGC 59.962 55.000 16.60 0.00 40.11 4.70
82 83 1.077429 CCAGCTAGTTTGGGGAGCC 60.077 63.158 7.35 0.00 36.87 4.70
83 84 1.077429 CAGCTAGTTTGGGGAGCCC 60.077 63.158 0.00 0.00 45.71 5.19
93 94 3.942439 GGGAGCCCGGCCATAGAC 61.942 72.222 5.55 0.00 0.00 2.59
94 95 4.301027 GGAGCCCGGCCATAGACG 62.301 72.222 5.55 0.00 0.00 4.18
95 96 3.537874 GAGCCCGGCCATAGACGT 61.538 66.667 5.55 0.00 0.00 4.34
96 97 3.501458 GAGCCCGGCCATAGACGTC 62.501 68.421 7.70 7.70 0.00 4.34
97 98 4.944372 GCCCGGCCATAGACGTCG 62.944 72.222 10.46 0.00 0.00 5.12
98 99 3.524606 CCCGGCCATAGACGTCGT 61.525 66.667 10.46 0.00 0.00 4.34
99 100 2.278596 CCGGCCATAGACGTCGTG 60.279 66.667 10.46 12.96 0.00 4.35
100 101 2.767445 CCGGCCATAGACGTCGTGA 61.767 63.158 20.81 7.76 0.00 4.35
101 102 1.298413 CGGCCATAGACGTCGTGAG 60.298 63.158 20.81 13.59 0.00 3.51
102 103 1.065928 GGCCATAGACGTCGTGAGG 59.934 63.158 20.81 16.84 0.00 3.86
103 104 1.664321 GGCCATAGACGTCGTGAGGT 61.664 60.000 20.81 2.15 0.00 3.85
104 105 0.248539 GCCATAGACGTCGTGAGGTC 60.249 60.000 20.81 13.32 44.12 3.85
105 106 0.381089 CCATAGACGTCGTGAGGTCC 59.619 60.000 20.81 2.65 44.67 4.46
106 107 1.092348 CATAGACGTCGTGAGGTCCA 58.908 55.000 16.57 6.24 44.67 4.02
107 108 1.471287 CATAGACGTCGTGAGGTCCAA 59.529 52.381 16.57 8.04 44.67 3.53
108 109 1.830279 TAGACGTCGTGAGGTCCAAT 58.170 50.000 16.57 4.22 44.67 3.16
109 110 0.243907 AGACGTCGTGAGGTCCAATG 59.756 55.000 16.57 0.00 44.67 2.82
110 111 0.242825 GACGTCGTGAGGTCCAATGA 59.757 55.000 0.63 0.00 39.54 2.57
111 112 0.677288 ACGTCGTGAGGTCCAATGAA 59.323 50.000 0.00 0.00 0.00 2.57
112 113 1.069513 ACGTCGTGAGGTCCAATGAAA 59.930 47.619 0.00 0.00 0.00 2.69
113 114 1.459592 CGTCGTGAGGTCCAATGAAAC 59.540 52.381 0.00 0.00 0.00 2.78
114 115 2.489971 GTCGTGAGGTCCAATGAAACA 58.510 47.619 0.00 0.00 0.00 2.83
115 116 2.875933 GTCGTGAGGTCCAATGAAACAA 59.124 45.455 0.00 0.00 0.00 2.83
116 117 3.058914 GTCGTGAGGTCCAATGAAACAAG 60.059 47.826 0.00 0.00 0.00 3.16
117 118 3.138304 CGTGAGGTCCAATGAAACAAGA 58.862 45.455 0.00 0.00 0.00 3.02
118 119 3.563808 CGTGAGGTCCAATGAAACAAGAA 59.436 43.478 0.00 0.00 0.00 2.52
119 120 4.036262 CGTGAGGTCCAATGAAACAAGAAA 59.964 41.667 0.00 0.00 0.00 2.52
120 121 5.523369 GTGAGGTCCAATGAAACAAGAAAG 58.477 41.667 0.00 0.00 0.00 2.62
121 122 5.299279 GTGAGGTCCAATGAAACAAGAAAGA 59.701 40.000 0.00 0.00 0.00 2.52
122 123 5.532406 TGAGGTCCAATGAAACAAGAAAGAG 59.468 40.000 0.00 0.00 0.00 2.85
123 124 4.829492 AGGTCCAATGAAACAAGAAAGAGG 59.171 41.667 0.00 0.00 0.00 3.69
124 125 4.021981 GGTCCAATGAAACAAGAAAGAGGG 60.022 45.833 0.00 0.00 0.00 4.30
125 126 3.573967 TCCAATGAAACAAGAAAGAGGGC 59.426 43.478 0.00 0.00 0.00 5.19
126 127 3.306294 CCAATGAAACAAGAAAGAGGGCC 60.306 47.826 0.00 0.00 0.00 5.80
127 128 1.995376 TGAAACAAGAAAGAGGGCCC 58.005 50.000 16.46 16.46 0.00 5.80
128 129 1.216678 TGAAACAAGAAAGAGGGCCCA 59.783 47.619 27.56 0.00 0.00 5.36
129 130 1.613925 GAAACAAGAAAGAGGGCCCAC 59.386 52.381 27.56 19.83 0.00 4.61
130 131 0.537371 AACAAGAAAGAGGGCCCACG 60.537 55.000 27.56 6.25 0.00 4.94
131 132 1.073199 CAAGAAAGAGGGCCCACGT 59.927 57.895 27.56 14.39 0.00 4.49
132 133 0.323629 CAAGAAAGAGGGCCCACGTA 59.676 55.000 27.56 0.00 0.00 3.57
133 134 0.323957 AAGAAAGAGGGCCCACGTAC 59.676 55.000 27.56 13.97 0.00 3.67
134 135 1.447314 GAAAGAGGGCCCACGTACG 60.447 63.158 27.56 15.01 0.00 3.67
135 136 2.847435 GAAAGAGGGCCCACGTACGG 62.847 65.000 27.56 8.46 0.00 4.02
136 137 3.892104 AAGAGGGCCCACGTACGGA 62.892 63.158 27.56 0.00 0.00 4.69
137 138 3.152400 GAGGGCCCACGTACGGAT 61.152 66.667 27.56 0.00 0.00 4.18
138 139 3.441011 GAGGGCCCACGTACGGATG 62.441 68.421 27.56 9.60 0.00 3.51
140 141 4.460683 GGCCCACGTACGGATGCA 62.461 66.667 21.06 0.00 0.00 3.96
141 142 3.192922 GCCCACGTACGGATGCAC 61.193 66.667 21.06 0.00 0.00 4.57
142 143 2.883730 CCCACGTACGGATGCACG 60.884 66.667 21.06 0.00 43.63 5.34
143 144 3.550992 CCACGTACGGATGCACGC 61.551 66.667 21.06 0.00 41.80 5.34
144 145 3.550992 CACGTACGGATGCACGCC 61.551 66.667 21.06 0.00 41.80 5.68
145 146 4.807039 ACGTACGGATGCACGCCC 62.807 66.667 21.06 0.00 41.80 6.13
147 148 4.157120 GTACGGATGCACGCCCCT 62.157 66.667 0.00 0.00 37.37 4.79
148 149 4.155733 TACGGATGCACGCCCCTG 62.156 66.667 0.00 0.00 37.37 4.45
151 152 3.792736 GGATGCACGCCCCTGGTA 61.793 66.667 0.00 0.00 0.00 3.25
152 153 2.510906 GATGCACGCCCCTGGTAT 59.489 61.111 0.00 0.00 0.00 2.73
153 154 1.752198 GATGCACGCCCCTGGTATA 59.248 57.895 0.00 0.00 0.00 1.47
154 155 0.320771 GATGCACGCCCCTGGTATAG 60.321 60.000 0.00 0.00 0.00 1.31
155 156 0.762842 ATGCACGCCCCTGGTATAGA 60.763 55.000 0.00 0.00 0.00 1.98
156 157 1.367840 GCACGCCCCTGGTATAGAG 59.632 63.158 0.00 0.00 0.00 2.43
157 158 1.113517 GCACGCCCCTGGTATAGAGA 61.114 60.000 0.00 0.00 0.00 3.10
158 159 1.410004 CACGCCCCTGGTATAGAGAA 58.590 55.000 0.00 0.00 0.00 2.87
159 160 1.068741 CACGCCCCTGGTATAGAGAAC 59.931 57.143 0.00 0.00 0.00 3.01
160 161 1.342674 ACGCCCCTGGTATAGAGAACA 60.343 52.381 0.00 0.00 0.00 3.18
161 162 1.971357 CGCCCCTGGTATAGAGAACAT 59.029 52.381 0.00 0.00 0.00 2.71
162 163 2.289072 CGCCCCTGGTATAGAGAACATG 60.289 54.545 0.00 0.00 0.00 3.21
163 164 2.972713 GCCCCTGGTATAGAGAACATGA 59.027 50.000 0.00 0.00 0.00 3.07
164 165 3.007398 GCCCCTGGTATAGAGAACATGAG 59.993 52.174 0.00 0.00 0.00 2.90
165 166 4.483950 CCCCTGGTATAGAGAACATGAGA 58.516 47.826 0.00 0.00 0.00 3.27
166 167 4.526262 CCCCTGGTATAGAGAACATGAGAG 59.474 50.000 0.00 0.00 0.00 3.20
167 168 4.526262 CCCTGGTATAGAGAACATGAGAGG 59.474 50.000 0.00 0.00 0.00 3.69
168 169 5.389520 CCTGGTATAGAGAACATGAGAGGA 58.610 45.833 0.00 0.00 0.00 3.71
169 170 5.476599 CCTGGTATAGAGAACATGAGAGGAG 59.523 48.000 0.00 0.00 0.00 3.69
170 171 5.389520 TGGTATAGAGAACATGAGAGGAGG 58.610 45.833 0.00 0.00 0.00 4.30
171 172 5.134509 TGGTATAGAGAACATGAGAGGAGGA 59.865 44.000 0.00 0.00 0.00 3.71
172 173 5.710099 GGTATAGAGAACATGAGAGGAGGAG 59.290 48.000 0.00 0.00 0.00 3.69
173 174 3.030873 AGAGAACATGAGAGGAGGAGG 57.969 52.381 0.00 0.00 0.00 4.30
174 175 2.584965 AGAGAACATGAGAGGAGGAGGA 59.415 50.000 0.00 0.00 0.00 3.71
175 176 2.693074 GAGAACATGAGAGGAGGAGGAC 59.307 54.545 0.00 0.00 0.00 3.85
176 177 1.760029 GAACATGAGAGGAGGAGGACC 59.240 57.143 0.00 0.00 0.00 4.46
177 178 0.712979 ACATGAGAGGAGGAGGACCA 59.287 55.000 0.00 0.00 38.94 4.02
178 179 1.118838 CATGAGAGGAGGAGGACCAC 58.881 60.000 0.00 0.00 38.94 4.16
179 180 0.712979 ATGAGAGGAGGAGGACCACA 59.287 55.000 0.00 0.00 38.94 4.17
180 181 0.251832 TGAGAGGAGGAGGACCACAC 60.252 60.000 0.00 0.00 38.94 3.82
181 182 0.973496 GAGAGGAGGAGGACCACACC 60.973 65.000 0.00 0.00 38.94 4.16
182 183 1.079438 GAGGAGGAGGACCACACCT 59.921 63.158 5.13 5.13 43.64 4.00
183 184 0.545548 GAGGAGGAGGACCACACCTT 60.546 60.000 6.63 0.00 40.73 3.50
184 185 0.104409 AGGAGGAGGACCACACCTTT 60.104 55.000 6.40 0.00 40.73 3.11
185 186 0.036875 GGAGGAGGACCACACCTTTG 59.963 60.000 6.40 0.00 40.73 2.77
186 187 0.606673 GAGGAGGACCACACCTTTGC 60.607 60.000 6.40 0.00 40.73 3.68
187 188 1.062488 AGGAGGACCACACCTTTGCT 61.062 55.000 0.00 0.00 40.73 3.91
188 189 0.890996 GGAGGACCACACCTTTGCTG 60.891 60.000 0.00 0.00 40.73 4.41
189 190 0.108585 GAGGACCACACCTTTGCTGA 59.891 55.000 0.00 0.00 40.73 4.26
190 191 0.773644 AGGACCACACCTTTGCTGAT 59.226 50.000 0.00 0.00 36.86 2.90
191 192 1.985159 AGGACCACACCTTTGCTGATA 59.015 47.619 0.00 0.00 36.86 2.15
192 193 2.026822 AGGACCACACCTTTGCTGATAG 60.027 50.000 0.00 0.00 36.86 2.08
193 194 2.027192 GGACCACACCTTTGCTGATAGA 60.027 50.000 0.00 0.00 0.00 1.98
194 195 3.559171 GGACCACACCTTTGCTGATAGAA 60.559 47.826 0.00 0.00 0.00 2.10
195 196 4.072131 GACCACACCTTTGCTGATAGAAA 58.928 43.478 0.00 0.00 0.00 2.52
196 197 3.821033 ACCACACCTTTGCTGATAGAAAC 59.179 43.478 0.00 0.00 0.00 2.78
197 198 3.820467 CCACACCTTTGCTGATAGAAACA 59.180 43.478 0.00 0.00 0.00 2.83
198 199 4.083110 CCACACCTTTGCTGATAGAAACAG 60.083 45.833 0.00 0.00 38.27 3.16
199 200 4.516698 CACACCTTTGCTGATAGAAACAGT 59.483 41.667 0.00 0.00 37.64 3.55
200 201 4.516698 ACACCTTTGCTGATAGAAACAGTG 59.483 41.667 0.00 0.00 37.64 3.66
201 202 4.756642 CACCTTTGCTGATAGAAACAGTGA 59.243 41.667 0.00 0.00 37.64 3.41
202 203 4.757149 ACCTTTGCTGATAGAAACAGTGAC 59.243 41.667 0.00 0.00 37.64 3.67
203 204 4.154918 CCTTTGCTGATAGAAACAGTGACC 59.845 45.833 0.00 0.00 37.64 4.02
204 205 3.334583 TGCTGATAGAAACAGTGACCC 57.665 47.619 0.00 0.00 37.64 4.46
205 206 2.637382 TGCTGATAGAAACAGTGACCCA 59.363 45.455 0.00 0.00 37.64 4.51
206 207 3.072330 TGCTGATAGAAACAGTGACCCAA 59.928 43.478 0.00 0.00 37.64 4.12
207 208 4.263462 TGCTGATAGAAACAGTGACCCAAT 60.263 41.667 0.00 0.00 37.64 3.16
208 209 4.333926 GCTGATAGAAACAGTGACCCAATC 59.666 45.833 0.00 0.00 37.64 2.67
209 210 4.503910 TGATAGAAACAGTGACCCAATCG 58.496 43.478 0.00 0.00 0.00 3.34
210 211 2.930826 AGAAACAGTGACCCAATCGT 57.069 45.000 0.00 0.00 0.00 3.73
211 212 3.208747 AGAAACAGTGACCCAATCGTT 57.791 42.857 0.00 0.00 0.00 3.85
212 213 2.878406 AGAAACAGTGACCCAATCGTTG 59.122 45.455 0.00 0.00 0.00 4.10
213 214 2.341846 AACAGTGACCCAATCGTTGT 57.658 45.000 0.00 0.00 0.00 3.32
214 215 3.478857 AACAGTGACCCAATCGTTGTA 57.521 42.857 0.00 0.00 0.00 2.41
215 216 3.695830 ACAGTGACCCAATCGTTGTAT 57.304 42.857 0.00 0.00 0.00 2.29
216 217 3.334691 ACAGTGACCCAATCGTTGTATG 58.665 45.455 0.00 0.00 0.00 2.39
217 218 3.244422 ACAGTGACCCAATCGTTGTATGT 60.244 43.478 0.00 0.00 0.00 2.29
218 219 3.751175 CAGTGACCCAATCGTTGTATGTT 59.249 43.478 0.00 0.00 0.00 2.71
219 220 4.000988 AGTGACCCAATCGTTGTATGTTC 58.999 43.478 0.00 0.00 0.00 3.18
220 221 3.749088 GTGACCCAATCGTTGTATGTTCA 59.251 43.478 0.00 0.00 0.00 3.18
221 222 4.394920 GTGACCCAATCGTTGTATGTTCAT 59.605 41.667 0.00 0.00 0.00 2.57
222 223 5.583061 GTGACCCAATCGTTGTATGTTCATA 59.417 40.000 0.00 0.00 0.00 2.15
223 224 6.092944 GTGACCCAATCGTTGTATGTTCATAA 59.907 38.462 0.00 0.00 0.00 1.90
224 225 6.655425 TGACCCAATCGTTGTATGTTCATAAA 59.345 34.615 0.00 0.00 0.00 1.40
225 226 6.848451 ACCCAATCGTTGTATGTTCATAAAC 58.152 36.000 0.00 2.44 35.85 2.01
238 239 6.142818 TGTTCATAAACAACCCAGTCAAAG 57.857 37.500 0.00 0.00 42.34 2.77
239 240 4.846779 TCATAAACAACCCAGTCAAAGC 57.153 40.909 0.00 0.00 0.00 3.51
240 241 3.572255 TCATAAACAACCCAGTCAAAGCC 59.428 43.478 0.00 0.00 0.00 4.35
241 242 1.859302 AAACAACCCAGTCAAAGCCA 58.141 45.000 0.00 0.00 0.00 4.75
242 243 1.859302 AACAACCCAGTCAAAGCCAA 58.141 45.000 0.00 0.00 0.00 4.52
243 244 1.111277 ACAACCCAGTCAAAGCCAAC 58.889 50.000 0.00 0.00 0.00 3.77
244 245 0.389025 CAACCCAGTCAAAGCCAACC 59.611 55.000 0.00 0.00 0.00 3.77
245 246 0.759060 AACCCAGTCAAAGCCAACCC 60.759 55.000 0.00 0.00 0.00 4.11
246 247 1.153756 CCCAGTCAAAGCCAACCCT 59.846 57.895 0.00 0.00 0.00 4.34
247 248 0.469892 CCCAGTCAAAGCCAACCCTT 60.470 55.000 0.00 0.00 0.00 3.95
256 257 0.108329 AGCCAACCCTTACATCGACG 60.108 55.000 0.00 0.00 0.00 5.12
349 350 4.202461 TGCAACCCTCACTAGTCATTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
353 354 4.019231 ACCCTCACTAGTCATTTTCTTCCC 60.019 45.833 0.00 0.00 0.00 3.97
395 396 1.070577 CAAAGACAAGCTGACGGTTCG 60.071 52.381 0.00 0.00 0.00 3.95
404 405 1.126846 GCTGACGGTTCGAAACAGATG 59.873 52.381 14.64 0.00 32.40 2.90
408 409 0.179250 CGGTTCGAAACAGATGTGCG 60.179 55.000 14.64 3.03 0.00 5.34
428 429 1.713932 GCGCTCGAACCATTTTCAAAC 59.286 47.619 0.00 0.00 0.00 2.93
476 477 1.625508 GGACTCCACCCCTAGAATGGT 60.626 57.143 0.00 0.00 34.89 3.55
477 478 2.359994 GGACTCCACCCCTAGAATGGTA 60.360 54.545 0.00 0.00 34.89 3.25
478 479 2.966516 GACTCCACCCCTAGAATGGTAG 59.033 54.545 0.00 0.00 34.89 3.18
479 480 2.590611 ACTCCACCCCTAGAATGGTAGA 59.409 50.000 0.00 0.00 34.89 2.59
480 481 3.235200 CTCCACCCCTAGAATGGTAGAG 58.765 54.545 6.95 6.95 34.77 2.43
481 482 2.590611 TCCACCCCTAGAATGGTAGAGT 59.409 50.000 0.00 0.00 34.89 3.24
484 485 4.141688 CCACCCCTAGAATGGTAGAGTTTC 60.142 50.000 0.00 0.00 32.32 2.78
514 515 8.911662 GTGAACACATGAACAATAATGTAAACC 58.088 33.333 0.00 0.00 39.40 3.27
521 522 9.277565 CATGAACAATAATGTAAACCGAAAGAG 57.722 33.333 0.00 0.00 39.40 2.85
610 611 5.700832 CAGATTAGCAAAAGTGTCACCTACA 59.299 40.000 0.00 0.00 35.06 2.74
611 612 5.934625 AGATTAGCAAAAGTGTCACCTACAG 59.065 40.000 0.00 0.00 39.29 2.74
630 631 4.238514 ACAGCGCACTTTTACAAAAACAA 58.761 34.783 11.47 0.00 0.00 2.83
723 724 0.389391 TTGCCTATCTACCTCGCAGC 59.611 55.000 0.00 0.00 0.00 5.25
730 731 0.687757 TCTACCTCGCAGCCTTCCAT 60.688 55.000 0.00 0.00 0.00 3.41
750 751 6.677552 TCCATGGTTGGGTGAATAATTGATA 58.322 36.000 12.58 0.00 43.81 2.15
784 785 4.519350 CCAGTGTGAGAGTAGAGTGTGTTA 59.481 45.833 0.00 0.00 0.00 2.41
834 841 6.874278 TGGTGAATAATTGAGGAGAGAAGA 57.126 37.500 0.00 0.00 0.00 2.87
881 888 0.881796 CTTTTCCCTTTCCGGCTCAC 59.118 55.000 0.00 0.00 0.00 3.51
1016 1090 1.592669 CGATGGATCCAGGTGACGC 60.593 63.158 21.33 2.54 0.00 5.19
1043 1117 4.143073 CGACCTAGATCCTTCTCGATTACG 60.143 50.000 0.00 0.00 41.26 3.18
1637 1848 9.088512 ACATTATTTCTCTCTTGTTAAGTAGCG 57.911 33.333 0.00 0.00 0.00 4.26
1665 1876 5.121380 AGTGATGTAAATCCAGGCTCAAT 57.879 39.130 0.00 0.00 0.00 2.57
1699 1910 9.322776 GTCATACCAATAAGTAGTATTCGTACG 57.677 37.037 9.53 9.53 31.22 3.67
1746 1957 4.763073 TGACTGTTGCCTCATCTATTCTG 58.237 43.478 0.00 0.00 0.00 3.02
1779 1990 1.531365 CCCAGCACCTTTCTTGGCA 60.531 57.895 0.00 0.00 0.00 4.92
1780 1991 1.662044 CCAGCACCTTTCTTGGCAC 59.338 57.895 0.00 0.00 0.00 5.01
1804 2015 5.882557 CCATCTGGTTAGCTGTTGTAGAATT 59.117 40.000 0.00 0.00 0.00 2.17
1812 2023 8.903820 GGTTAGCTGTTGTAGAATTATCCAAAT 58.096 33.333 0.00 0.00 0.00 2.32
1837 2048 0.107945 CTTCGGAGAAGGCCTTGAGG 60.108 60.000 26.25 10.60 45.90 3.86
1846 2057 1.303643 GGCCTTGAGGGTGTTGGAG 60.304 63.158 0.00 0.00 37.43 3.86
1855 2066 2.167487 GAGGGTGTTGGAGATCTCACTC 59.833 54.545 23.85 13.79 36.31 3.51
1859 2070 3.632604 GGTGTTGGAGATCTCACTCGATA 59.367 47.826 23.85 2.89 37.74 2.92
1860 2071 4.098044 GGTGTTGGAGATCTCACTCGATAA 59.902 45.833 23.85 4.82 37.74 1.75
1861 2072 5.394224 GGTGTTGGAGATCTCACTCGATAAA 60.394 44.000 23.85 2.85 37.74 1.40
1862 2073 5.746245 GTGTTGGAGATCTCACTCGATAAAG 59.254 44.000 23.85 0.00 37.74 1.85
1863 2074 5.652452 TGTTGGAGATCTCACTCGATAAAGA 59.348 40.000 23.85 1.76 37.74 2.52
1864 2075 5.759506 TGGAGATCTCACTCGATAAAGAC 57.240 43.478 23.85 2.74 37.74 3.01
1865 2076 5.193679 TGGAGATCTCACTCGATAAAGACA 58.806 41.667 23.85 5.33 37.74 3.41
1866 2077 5.066634 TGGAGATCTCACTCGATAAAGACAC 59.933 44.000 23.85 1.69 37.74 3.67
1867 2078 5.066634 GGAGATCTCACTCGATAAAGACACA 59.933 44.000 23.85 0.00 37.74 3.72
1868 2079 6.130298 AGATCTCACTCGATAAAGACACAG 57.870 41.667 0.00 0.00 0.00 3.66
1869 2080 4.098055 TCTCACTCGATAAAGACACAGC 57.902 45.455 0.00 0.00 0.00 4.40
1870 2081 2.848887 CTCACTCGATAAAGACACAGCG 59.151 50.000 0.00 0.00 0.00 5.18
1903 2114 4.325028 TGCTTCAGATGCATTTTGTTGT 57.675 36.364 6.89 0.00 35.31 3.32
1926 2137 1.134007 CAGATGCATGAGGCCCACTTA 60.134 52.381 2.46 0.00 43.89 2.24
1982 2193 4.281435 TGTGAATCTGTACCGTTAGTTCCA 59.719 41.667 0.00 0.00 0.00 3.53
2010 2221 3.296854 GAACCAGGGTTTCAAGGAACTT 58.703 45.455 4.99 0.00 44.43 2.66
2011 2222 3.296854 AACCAGGGTTTCAAGGAACTTC 58.703 45.455 0.00 0.00 40.63 3.01
2012 2223 4.247224 AACCAGGGTTTCAAGGAACTTCG 61.247 47.826 0.00 0.00 40.63 3.79
2013 2224 6.454393 AACCAGGGTTTCAAGGAACTTCGA 62.454 45.833 0.00 0.00 40.63 3.71
2014 2225 7.683450 AACCAGGGTTTCAAGGAACTTCGAT 62.683 44.000 0.00 0.00 40.63 3.59
2025 2236 5.073311 AGGAACTTCGATTTCAGATTCGA 57.927 39.130 8.96 2.62 42.19 3.71
2099 2310 7.772332 AATTTCATTCTTAGCTACAGTACCG 57.228 36.000 0.00 0.00 0.00 4.02
2107 2318 5.649395 TCTTAGCTACAGTACCGTATGTTGT 59.351 40.000 0.00 0.00 0.00 3.32
2202 2413 4.647853 TGGAGATAAGCGTTGGTACTGTAT 59.352 41.667 0.00 0.00 0.00 2.29
2229 2440 3.807553 TGGTGTACCATGATGTGCTATG 58.192 45.455 0.00 0.00 42.01 2.23
2231 2442 4.199310 GGTGTACCATGATGTGCTATGTT 58.801 43.478 0.00 0.00 35.64 2.71
2287 2498 6.863126 TGGTAGTTAACTTTAGTCGTGTAAGC 59.137 38.462 14.49 1.29 0.00 3.09
2306 2517 1.987770 GCGTGAGATTTAACCGTTCGA 59.012 47.619 0.00 0.00 0.00 3.71
2309 2520 2.669924 GTGAGATTTAACCGTTCGACCC 59.330 50.000 0.00 0.00 0.00 4.46
2413 2784 5.816258 AGTCATGCATTCTGAACTATGTCTG 59.184 40.000 0.00 0.00 0.00 3.51
2453 2824 2.222213 TGCACAAACGACGGAACTTATG 59.778 45.455 0.00 0.00 0.00 1.90
2457 2828 3.985925 ACAAACGACGGAACTTATGTCTC 59.014 43.478 0.00 0.00 0.00 3.36
2518 2889 2.361230 GCCCGGGGAGTTTGGAAG 60.361 66.667 25.28 0.00 0.00 3.46
2527 2898 2.519013 GGAGTTTGGAAGCCACTTGAT 58.481 47.619 0.00 0.00 30.78 2.57
2540 2911 4.416848 AGCCACTTGATGAATATAACCCCT 59.583 41.667 0.00 0.00 0.00 4.79
2596 2967 7.406031 ACGAACCTATTTCTGACTCTAATCA 57.594 36.000 0.00 0.00 31.20 2.57
2612 2983 6.127535 ACTCTAATCAATGTGAAGCAAATGGG 60.128 38.462 0.00 0.00 0.00 4.00
2777 3148 3.270027 CCATCACATAGAGCGAACCAAA 58.730 45.455 0.00 0.00 0.00 3.28
2864 3235 0.901580 CATTTGGGCCAGGAAGCACT 60.902 55.000 6.23 0.00 36.97 4.40
2950 3321 6.473397 AACTATGCTTGACTCTTTTCTTCG 57.527 37.500 0.00 0.00 0.00 3.79
2954 3325 2.772287 CTTGACTCTTTTCTTCGGCCT 58.228 47.619 0.00 0.00 0.00 5.19
2955 3326 2.169832 TGACTCTTTTCTTCGGCCTG 57.830 50.000 0.00 0.00 0.00 4.85
2993 3364 4.088634 TGGGCTTGAATAATTCTGCTTGT 58.911 39.130 0.00 0.00 33.05 3.16
3025 3396 4.202461 ACCTGAATCTGTATGTGTGTTGGT 60.202 41.667 0.00 0.00 0.00 3.67
3031 3402 4.713553 TCTGTATGTGTGTTGGTTGATGT 58.286 39.130 0.00 0.00 0.00 3.06
3056 3427 1.065551 GTGTCTTCAAGTGTGTTGGCC 59.934 52.381 0.00 0.00 0.00 5.36
3074 3445 0.792640 CCGATGTTGCAGTGTCTGAC 59.207 55.000 0.00 0.00 32.44 3.51
3096 3467 5.491070 ACACTTCTATGTTTGATGCTGCTA 58.509 37.500 0.00 0.00 0.00 3.49
3129 3500 2.035961 GCTACAGTGTCTGAAGGTGTGA 59.964 50.000 0.00 0.00 35.18 3.58
3147 3518 1.764723 TGATGGCTGCTGCTGTAGTAT 59.235 47.619 15.64 5.63 39.59 2.12
3148 3519 2.224137 TGATGGCTGCTGCTGTAGTATC 60.224 50.000 15.64 13.27 39.59 2.24
3149 3520 1.489481 TGGCTGCTGCTGTAGTATCT 58.511 50.000 15.64 0.00 39.59 1.98
3150 3521 2.666317 TGGCTGCTGCTGTAGTATCTA 58.334 47.619 15.64 0.00 39.59 1.98
3151 3522 3.031013 TGGCTGCTGCTGTAGTATCTAA 58.969 45.455 15.64 0.00 39.59 2.10
3152 3523 3.643320 TGGCTGCTGCTGTAGTATCTAAT 59.357 43.478 15.64 0.00 39.59 1.73
3153 3524 4.832823 TGGCTGCTGCTGTAGTATCTAATA 59.167 41.667 15.64 0.00 39.59 0.98
3154 3525 5.164954 GGCTGCTGCTGTAGTATCTAATAC 58.835 45.833 15.64 0.00 39.59 1.89
3155 3526 5.047660 GGCTGCTGCTGTAGTATCTAATACT 60.048 44.000 15.64 5.08 42.79 2.12
3156 3527 5.861251 GCTGCTGCTGTAGTATCTAATACTG 59.139 44.000 8.53 1.45 40.10 2.74
3157 3528 5.773575 TGCTGCTGTAGTATCTAATACTGC 58.226 41.667 15.38 15.38 45.24 4.40
3178 3549 3.499918 GCAGTGTCTGATGGTATTATGGC 59.500 47.826 0.66 0.00 32.44 4.40
3233 3604 3.308595 CACGTGTTTTGAACTCTACTGCA 59.691 43.478 7.58 0.00 0.00 4.41
3274 3645 2.898920 ATCCATGAAGCTGCCGGTGG 62.899 60.000 1.90 0.00 0.00 4.61
3310 3681 0.540923 AGGAGCAGATCAGAGGTTGC 59.459 55.000 0.00 0.00 36.83 4.17
3354 3725 1.669115 CCGCACAGTGACAAGGAGG 60.669 63.158 4.15 0.00 0.00 4.30
3361 3732 0.326264 AGTGACAAGGAGGGATGTGC 59.674 55.000 0.00 0.00 0.00 4.57
3365 3736 3.329889 AAGGAGGGATGTGCGCCA 61.330 61.111 4.18 2.31 0.00 5.69
3476 3847 2.038659 CAAATGGGGGTTGAACAGTGT 58.961 47.619 0.00 0.00 0.00 3.55
3488 3859 5.277828 GGTTGAACAGTGTGGTATTGAAGTC 60.278 44.000 0.00 0.00 0.00 3.01
3603 3974 9.261035 AGGAGAAAGTCAAGACTATTCAATCTA 57.739 33.333 18.39 0.00 41.58 1.98
3680 4051 1.189752 GAGGATGTGCTCTGGTGAGA 58.810 55.000 0.00 0.00 42.73 3.27
3685 4056 2.654749 TGTGCTCTGGTGAGATTACG 57.345 50.000 0.00 0.00 42.73 3.18
3768 4139 7.388224 TGCAATGAAATTTCAGCATTACATTGT 59.612 29.630 23.74 4.33 42.56 2.71
3769 4140 7.690637 GCAATGAAATTTCAGCATTACATTGTG 59.309 33.333 24.17 5.03 42.56 3.33
3775 4146 7.837202 ATTTCAGCATTACATTGTGGAAATG 57.163 32.000 0.00 3.21 33.88 2.32
3816 4188 7.575414 TTTCATCTAAAAACTTACACAGCCA 57.425 32.000 0.00 0.00 0.00 4.75
3836 4208 4.811557 GCCAGCTAGACATTATTTCGTCTT 59.188 41.667 0.00 0.00 42.41 3.01
4110 4482 0.473755 TTCCAGCCAGACAAGAGCAA 59.526 50.000 0.00 0.00 0.00 3.91
4118 4490 2.289002 CCAGACAAGAGCAACAACACTC 59.711 50.000 0.00 0.00 0.00 3.51
4127 4499 1.402787 CAACAACACTCAGGGCCTTT 58.597 50.000 1.32 0.00 0.00 3.11
4129 4501 0.535102 ACAACACTCAGGGCCTTTCG 60.535 55.000 1.32 0.00 0.00 3.46
4323 4697 6.589135 ACTTGTAGCTGTTAAACAACTACCT 58.411 36.000 11.76 5.18 43.50 3.08
4324 4698 7.729116 ACTTGTAGCTGTTAAACAACTACCTA 58.271 34.615 11.76 4.48 43.50 3.08
4325 4699 7.871463 ACTTGTAGCTGTTAAACAACTACCTAG 59.129 37.037 11.76 11.15 43.50 3.02
4326 4700 7.294017 TGTAGCTGTTAAACAACTACCTAGT 57.706 36.000 11.76 0.00 43.50 2.57
4327 4701 8.408043 TGTAGCTGTTAAACAACTACCTAGTA 57.592 34.615 11.76 0.00 43.50 1.82
4328 4702 9.028284 TGTAGCTGTTAAACAACTACCTAGTAT 57.972 33.333 11.76 0.00 43.50 2.12
4348 4722 6.678878 AGTATTAGTATGTATGTCTGTGCCG 58.321 40.000 0.00 0.00 0.00 5.69
4411 4785 2.618241 TCAGAGTGTTGTTTGGTGCATC 59.382 45.455 0.00 0.00 0.00 3.91
4437 4811 8.670135 CAATGCATGGTTCAAATTTGATTATGT 58.330 29.630 21.10 8.69 37.00 2.29
4516 4890 8.972127 TCTGTTAGCTGTAGATCAACTTTATCT 58.028 33.333 0.00 0.00 37.46 1.98
4519 4893 9.372369 GTTAGCTGTAGATCAACTTTATCTTGT 57.628 33.333 0.00 0.00 35.36 3.16
4533 4907 8.794335 ACTTTATCTTGTAATTTCTCTGGACC 57.206 34.615 0.00 0.00 0.00 4.46
4534 4908 8.606830 ACTTTATCTTGTAATTTCTCTGGACCT 58.393 33.333 0.00 0.00 0.00 3.85
4535 4909 8.792830 TTTATCTTGTAATTTCTCTGGACCTG 57.207 34.615 0.00 0.00 0.00 4.00
4536 4910 6.627087 ATCTTGTAATTTCTCTGGACCTGA 57.373 37.500 0.64 0.64 0.00 3.86
4537 4911 6.433847 TCTTGTAATTTCTCTGGACCTGAA 57.566 37.500 2.38 0.00 0.00 3.02
4538 4912 6.837312 TCTTGTAATTTCTCTGGACCTGAAA 58.163 36.000 2.38 6.47 34.75 2.69
4539 4913 7.287061 TCTTGTAATTTCTCTGGACCTGAAAA 58.713 34.615 2.38 6.80 34.09 2.29
4540 4914 7.944554 TCTTGTAATTTCTCTGGACCTGAAAAT 59.055 33.333 2.38 8.48 34.09 1.82
4541 4915 9.231297 CTTGTAATTTCTCTGGACCTGAAAATA 57.769 33.333 15.28 8.92 34.09 1.40
4542 4916 9.581289 TTGTAATTTCTCTGGACCTGAAAATAA 57.419 29.630 15.28 8.62 34.09 1.40
4543 4917 9.581289 TGTAATTTCTCTGGACCTGAAAATAAA 57.419 29.630 15.28 9.36 34.09 1.40
4546 4920 9.764363 AATTTCTCTGGACCTGAAAATAAAAAC 57.236 29.630 15.28 0.00 34.09 2.43
4547 4921 7.889873 TTCTCTGGACCTGAAAATAAAAACA 57.110 32.000 2.38 0.00 0.00 2.83
4548 4922 7.889873 TCTCTGGACCTGAAAATAAAAACAA 57.110 32.000 2.38 0.00 0.00 2.83
4549 4923 8.477419 TCTCTGGACCTGAAAATAAAAACAAT 57.523 30.769 2.38 0.00 0.00 2.71
4550 4924 9.581289 TCTCTGGACCTGAAAATAAAAACAATA 57.419 29.630 2.38 0.00 0.00 1.90
4577 4951 7.575414 TGGAAACAAGTTAACATACACACAT 57.425 32.000 8.61 0.00 37.44 3.21
4578 4952 7.644490 TGGAAACAAGTTAACATACACACATC 58.356 34.615 8.61 0.00 37.44 3.06
4579 4953 7.500892 TGGAAACAAGTTAACATACACACATCT 59.499 33.333 8.61 0.00 37.44 2.90
4580 4954 8.995220 GGAAACAAGTTAACATACACACATCTA 58.005 33.333 8.61 0.00 0.00 1.98
4585 4959 9.277565 CAAGTTAACATACACACATCTAATTGC 57.722 33.333 8.61 0.00 0.00 3.56
4586 4960 7.985476 AGTTAACATACACACATCTAATTGCC 58.015 34.615 8.61 0.00 0.00 4.52
4587 4961 7.829211 AGTTAACATACACACATCTAATTGCCT 59.171 33.333 8.61 0.00 0.00 4.75
4588 4962 8.458843 GTTAACATACACACATCTAATTGCCTT 58.541 33.333 0.00 0.00 0.00 4.35
4589 4963 6.441093 ACATACACACATCTAATTGCCTTG 57.559 37.500 0.00 0.00 0.00 3.61
4590 4964 5.945784 ACATACACACATCTAATTGCCTTGT 59.054 36.000 0.00 0.00 0.00 3.16
4591 4965 6.094048 ACATACACACATCTAATTGCCTTGTC 59.906 38.462 0.00 0.00 0.00 3.18
4592 4966 3.436704 ACACACATCTAATTGCCTTGTCG 59.563 43.478 0.00 0.00 0.00 4.35
4593 4967 3.684305 CACACATCTAATTGCCTTGTCGA 59.316 43.478 0.00 0.00 0.00 4.20
4594 4968 4.154015 CACACATCTAATTGCCTTGTCGAA 59.846 41.667 0.00 0.00 0.00 3.71
4595 4969 4.393062 ACACATCTAATTGCCTTGTCGAAG 59.607 41.667 0.00 0.00 0.00 3.79
4596 4970 3.375299 ACATCTAATTGCCTTGTCGAAGC 59.625 43.478 0.00 0.00 0.00 3.86
4597 4971 3.334583 TCTAATTGCCTTGTCGAAGCT 57.665 42.857 0.00 0.00 0.00 3.74
4598 4972 4.465632 TCTAATTGCCTTGTCGAAGCTA 57.534 40.909 0.00 0.00 0.00 3.32
4599 4973 5.023533 TCTAATTGCCTTGTCGAAGCTAT 57.976 39.130 0.00 0.00 0.00 2.97
4600 4974 6.156748 TCTAATTGCCTTGTCGAAGCTATA 57.843 37.500 0.00 0.00 0.00 1.31
4601 4975 6.759272 TCTAATTGCCTTGTCGAAGCTATAT 58.241 36.000 0.00 0.00 0.00 0.86
4602 4976 7.217200 TCTAATTGCCTTGTCGAAGCTATATT 58.783 34.615 0.00 0.00 0.00 1.28
4603 4977 8.364894 TCTAATTGCCTTGTCGAAGCTATATTA 58.635 33.333 0.00 0.00 0.00 0.98
4604 4978 7.986085 AATTGCCTTGTCGAAGCTATATTAT 57.014 32.000 0.00 0.00 0.00 1.28
4605 4979 7.986085 ATTGCCTTGTCGAAGCTATATTATT 57.014 32.000 0.00 0.00 0.00 1.40
4606 4980 7.801716 TTGCCTTGTCGAAGCTATATTATTT 57.198 32.000 0.00 0.00 0.00 1.40
4607 4981 7.801716 TGCCTTGTCGAAGCTATATTATTTT 57.198 32.000 0.00 0.00 0.00 1.82
4608 4982 7.639039 TGCCTTGTCGAAGCTATATTATTTTG 58.361 34.615 0.00 0.00 0.00 2.44
4609 4983 6.578919 GCCTTGTCGAAGCTATATTATTTTGC 59.421 38.462 0.00 0.00 0.00 3.68
4610 4984 7.639039 CCTTGTCGAAGCTATATTATTTTGCA 58.361 34.615 0.00 0.00 0.00 4.08
4611 4985 8.292448 CCTTGTCGAAGCTATATTATTTTGCAT 58.708 33.333 0.00 0.00 0.00 3.96
4612 4986 9.669353 CTTGTCGAAGCTATATTATTTTGCATT 57.331 29.630 0.00 0.00 0.00 3.56
4692 5066 9.135189 TGTAGAACACTAGAAACTGGTACTTAA 57.865 33.333 0.00 0.00 0.00 1.85
4735 5109 5.221742 GGGGGTCTCTACTGATATGAAAAGG 60.222 48.000 0.00 0.00 0.00 3.11
4819 5193 4.546829 TTACATAAGTGTCCCCTGTCAC 57.453 45.455 0.00 0.00 39.77 3.67
4872 5246 8.977267 AAAAATGACCATTCCATTTCTCAAAA 57.023 26.923 0.00 0.00 41.71 2.44
4873 5247 8.977267 AAAATGACCATTCCATTTCTCAAAAA 57.023 26.923 0.00 0.00 41.71 1.94
4874 5248 8.611654 AAATGACCATTCCATTTCTCAAAAAG 57.388 30.769 0.00 0.00 39.28 2.27
4966 5878 4.769488 TGCTGGAAACTTATTTGCATGGTA 59.231 37.500 0.00 0.00 44.14 3.25
4998 5910 1.338674 TGTTCCATCGTTCATCGCCTT 60.339 47.619 0.00 0.00 39.67 4.35
5075 5987 1.135315 GCATACACCGCAACTGCAG 59.865 57.895 13.48 13.48 42.21 4.41
5096 6008 3.009115 CCTTCCCCTTCCTCCGCA 61.009 66.667 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.753043 GGTCCGGGTCTGCGTAGA 60.753 66.667 0.00 0.00 0.00 2.59
1 2 3.834799 GGGTCCGGGTCTGCGTAG 61.835 72.222 0.00 0.00 0.00 3.51
5 6 4.452733 CTTCGGGTCCGGGTCTGC 62.453 72.222 9.68 0.00 40.25 4.26
6 7 2.058595 ATCTTCGGGTCCGGGTCTG 61.059 63.158 9.68 0.00 40.25 3.51
7 8 2.058595 CATCTTCGGGTCCGGGTCT 61.059 63.158 9.68 0.00 40.25 3.85
8 9 2.017559 CTCATCTTCGGGTCCGGGTC 62.018 65.000 9.68 0.00 40.25 4.46
9 10 2.038329 TCATCTTCGGGTCCGGGT 59.962 61.111 9.68 0.00 40.25 5.28
10 11 2.815308 CTCATCTTCGGGTCCGGG 59.185 66.667 9.68 3.60 40.25 5.73
11 12 2.107141 GCTCATCTTCGGGTCCGG 59.893 66.667 9.68 0.00 40.25 5.14
12 13 2.278857 CGCTCATCTTCGGGTCCG 60.279 66.667 2.52 2.52 41.35 4.79
13 14 1.227002 GTCGCTCATCTTCGGGTCC 60.227 63.158 0.00 0.00 0.00 4.46
14 15 0.248702 GAGTCGCTCATCTTCGGGTC 60.249 60.000 2.53 0.00 0.00 4.46
15 16 1.810532 GAGTCGCTCATCTTCGGGT 59.189 57.895 2.53 0.00 0.00 5.28
16 17 1.298713 CGAGTCGCTCATCTTCGGG 60.299 63.158 0.00 0.00 0.00 5.14
17 18 1.298713 CCGAGTCGCTCATCTTCGG 60.299 63.158 7.12 0.00 0.00 4.30
18 19 1.941734 GCCGAGTCGCTCATCTTCG 60.942 63.158 7.12 0.00 0.00 3.79
19 20 1.590259 GGCCGAGTCGCTCATCTTC 60.590 63.158 7.12 0.00 0.00 2.87
20 21 2.351244 TGGCCGAGTCGCTCATCTT 61.351 57.895 7.12 0.00 0.00 2.40
21 22 2.755876 TGGCCGAGTCGCTCATCT 60.756 61.111 7.12 0.00 0.00 2.90
22 23 2.583593 GTGGCCGAGTCGCTCATC 60.584 66.667 7.12 0.00 0.00 2.92
23 24 4.148825 GGTGGCCGAGTCGCTCAT 62.149 66.667 7.12 0.00 0.00 2.90
24 25 3.931190 TAGGTGGCCGAGTCGCTCA 62.931 63.158 7.12 4.43 0.00 4.26
25 26 3.127352 CTAGGTGGCCGAGTCGCTC 62.127 68.421 7.12 1.54 0.00 5.03
26 27 3.141488 CTAGGTGGCCGAGTCGCT 61.141 66.667 7.12 0.57 0.00 4.93
27 28 4.874977 GCTAGGTGGCCGAGTCGC 62.875 72.222 7.12 2.52 0.00 5.19
28 29 3.127352 GAGCTAGGTGGCCGAGTCG 62.127 68.421 5.29 5.29 0.00 4.18
29 30 2.809010 GAGCTAGGTGGCCGAGTC 59.191 66.667 0.00 0.00 0.00 3.36
30 31 3.141488 CGAGCTAGGTGGCCGAGT 61.141 66.667 0.00 0.00 0.00 4.18
31 32 3.127352 GACGAGCTAGGTGGCCGAG 62.127 68.421 0.00 0.00 32.95 4.63
32 33 3.138798 GACGAGCTAGGTGGCCGA 61.139 66.667 0.00 0.00 32.95 5.54
33 34 3.417275 CTGACGAGCTAGGTGGCCG 62.417 68.421 0.00 0.00 34.12 6.13
34 35 2.496817 CTGACGAGCTAGGTGGCC 59.503 66.667 0.00 0.00 0.00 5.36
35 36 2.202810 GCTGACGAGCTAGGTGGC 60.203 66.667 0.00 0.00 42.52 5.01
36 37 0.176680 AATGCTGACGAGCTAGGTGG 59.823 55.000 0.00 0.00 46.39 4.61
37 38 1.284657 CAATGCTGACGAGCTAGGTG 58.715 55.000 0.00 0.00 46.39 4.00
38 39 0.176680 CCAATGCTGACGAGCTAGGT 59.823 55.000 0.00 0.00 46.39 3.08
39 40 1.156645 GCCAATGCTGACGAGCTAGG 61.157 60.000 0.00 0.00 46.39 3.02
40 41 1.485838 CGCCAATGCTGACGAGCTAG 61.486 60.000 0.00 0.00 46.39 3.42
41 42 1.519234 CGCCAATGCTGACGAGCTA 60.519 57.895 0.00 0.00 46.39 3.32
42 43 2.816958 CGCCAATGCTGACGAGCT 60.817 61.111 0.00 0.00 46.39 4.09
43 44 3.869272 CCGCCAATGCTGACGAGC 61.869 66.667 0.00 0.00 46.44 5.03
44 45 0.739462 TTACCGCCAATGCTGACGAG 60.739 55.000 0.00 0.00 34.43 4.18
45 46 1.017177 GTTACCGCCAATGCTGACGA 61.017 55.000 0.00 0.00 34.43 4.20
46 47 1.423845 GTTACCGCCAATGCTGACG 59.576 57.895 0.00 0.00 34.43 4.35
47 48 0.958382 TGGTTACCGCCAATGCTGAC 60.958 55.000 0.00 0.00 35.25 3.51
48 49 0.676466 CTGGTTACCGCCAATGCTGA 60.676 55.000 0.00 0.00 38.18 4.26
49 50 1.802636 CTGGTTACCGCCAATGCTG 59.197 57.895 0.00 0.00 38.18 4.41
50 51 2.046285 GCTGGTTACCGCCAATGCT 61.046 57.895 6.90 0.00 38.18 3.79
51 52 0.746563 TAGCTGGTTACCGCCAATGC 60.747 55.000 12.91 3.67 38.18 3.56
52 53 1.299541 CTAGCTGGTTACCGCCAATG 58.700 55.000 12.91 0.87 38.18 2.82
53 54 0.909623 ACTAGCTGGTTACCGCCAAT 59.090 50.000 12.91 0.71 38.18 3.16
54 55 0.688487 AACTAGCTGGTTACCGCCAA 59.312 50.000 14.53 3.62 38.18 4.52
55 56 0.688487 AAACTAGCTGGTTACCGCCA 59.312 50.000 16.49 1.39 36.97 5.69
56 57 1.084289 CAAACTAGCTGGTTACCGCC 58.916 55.000 16.49 0.00 0.00 6.13
57 58 1.084289 CCAAACTAGCTGGTTACCGC 58.916 55.000 16.49 9.52 0.00 5.68
58 59 1.677820 CCCCAAACTAGCTGGTTACCG 60.678 57.143 16.49 7.80 31.45 4.02
59 60 1.631898 TCCCCAAACTAGCTGGTTACC 59.368 52.381 16.49 0.00 31.45 2.85
60 61 2.940083 GCTCCCCAAACTAGCTGGTTAC 60.940 54.545 16.49 0.00 33.40 2.50
61 62 1.280998 GCTCCCCAAACTAGCTGGTTA 59.719 52.381 16.49 0.00 33.40 2.85
62 63 0.038310 GCTCCCCAAACTAGCTGGTT 59.962 55.000 10.03 10.03 33.40 3.67
63 64 1.685820 GCTCCCCAAACTAGCTGGT 59.314 57.895 0.00 0.00 33.40 4.00
64 65 1.077429 GGCTCCCCAAACTAGCTGG 60.077 63.158 0.00 0.00 36.48 4.85
65 66 1.077429 GGGCTCCCCAAACTAGCTG 60.077 63.158 0.00 0.00 44.65 4.24
66 67 2.670148 CGGGCTCCCCAAACTAGCT 61.670 63.158 0.00 0.00 45.83 3.32
67 68 2.124695 CGGGCTCCCCAAACTAGC 60.125 66.667 0.00 0.00 45.83 3.42
68 69 2.590092 CCGGGCTCCCCAAACTAG 59.410 66.667 0.00 0.00 45.83 2.57
69 70 3.723922 GCCGGGCTCCCCAAACTA 61.724 66.667 12.87 0.00 45.83 2.24
76 77 3.942439 GTCTATGGCCGGGCTCCC 61.942 72.222 29.87 9.45 0.00 4.30
77 78 4.301027 CGTCTATGGCCGGGCTCC 62.301 72.222 29.87 9.87 0.00 4.70
78 79 3.501458 GACGTCTATGGCCGGGCTC 62.501 68.421 29.87 12.57 0.00 4.70
79 80 3.537874 GACGTCTATGGCCGGGCT 61.538 66.667 29.87 16.71 0.00 5.19
80 81 4.944372 CGACGTCTATGGCCGGGC 62.944 72.222 23.42 23.42 0.00 6.13
81 82 3.524606 ACGACGTCTATGGCCGGG 61.525 66.667 14.70 0.00 0.00 5.73
82 83 2.278596 CACGACGTCTATGGCCGG 60.279 66.667 14.70 0.00 0.00 6.13
83 84 1.298413 CTCACGACGTCTATGGCCG 60.298 63.158 14.70 1.04 0.00 6.13
84 85 1.065928 CCTCACGACGTCTATGGCC 59.934 63.158 14.70 0.00 0.00 5.36
85 86 0.248539 GACCTCACGACGTCTATGGC 60.249 60.000 14.70 0.00 0.00 4.40
86 87 0.381089 GGACCTCACGACGTCTATGG 59.619 60.000 14.70 12.28 0.00 2.74
87 88 1.092348 TGGACCTCACGACGTCTATG 58.908 55.000 14.70 11.88 0.00 2.23
88 89 1.830279 TTGGACCTCACGACGTCTAT 58.170 50.000 14.70 0.00 0.00 1.98
89 90 1.471287 CATTGGACCTCACGACGTCTA 59.529 52.381 14.70 0.00 0.00 2.59
90 91 0.243907 CATTGGACCTCACGACGTCT 59.756 55.000 14.70 0.00 0.00 4.18
91 92 0.242825 TCATTGGACCTCACGACGTC 59.757 55.000 5.18 5.18 0.00 4.34
92 93 0.677288 TTCATTGGACCTCACGACGT 59.323 50.000 0.00 0.00 0.00 4.34
93 94 1.459592 GTTTCATTGGACCTCACGACG 59.540 52.381 0.00 0.00 0.00 5.12
94 95 2.489971 TGTTTCATTGGACCTCACGAC 58.510 47.619 0.00 0.00 0.00 4.34
95 96 2.920724 TGTTTCATTGGACCTCACGA 57.079 45.000 0.00 0.00 0.00 4.35
96 97 3.138304 TCTTGTTTCATTGGACCTCACG 58.862 45.455 0.00 0.00 0.00 4.35
97 98 5.299279 TCTTTCTTGTTTCATTGGACCTCAC 59.701 40.000 0.00 0.00 0.00 3.51
98 99 5.445069 TCTTTCTTGTTTCATTGGACCTCA 58.555 37.500 0.00 0.00 0.00 3.86
99 100 5.048434 CCTCTTTCTTGTTTCATTGGACCTC 60.048 44.000 0.00 0.00 0.00 3.85
100 101 4.829492 CCTCTTTCTTGTTTCATTGGACCT 59.171 41.667 0.00 0.00 0.00 3.85
101 102 4.021981 CCCTCTTTCTTGTTTCATTGGACC 60.022 45.833 0.00 0.00 0.00 4.46
102 103 4.559502 GCCCTCTTTCTTGTTTCATTGGAC 60.560 45.833 0.00 0.00 0.00 4.02
103 104 3.573967 GCCCTCTTTCTTGTTTCATTGGA 59.426 43.478 0.00 0.00 0.00 3.53
104 105 3.306294 GGCCCTCTTTCTTGTTTCATTGG 60.306 47.826 0.00 0.00 0.00 3.16
105 106 3.306294 GGGCCCTCTTTCTTGTTTCATTG 60.306 47.826 17.04 0.00 0.00 2.82
106 107 2.899900 GGGCCCTCTTTCTTGTTTCATT 59.100 45.455 17.04 0.00 0.00 2.57
107 108 2.158325 TGGGCCCTCTTTCTTGTTTCAT 60.158 45.455 25.70 0.00 0.00 2.57
108 109 1.216678 TGGGCCCTCTTTCTTGTTTCA 59.783 47.619 25.70 0.00 0.00 2.69
109 110 1.613925 GTGGGCCCTCTTTCTTGTTTC 59.386 52.381 25.70 0.00 0.00 2.78
110 111 1.704641 GTGGGCCCTCTTTCTTGTTT 58.295 50.000 25.70 0.00 0.00 2.83
111 112 0.537371 CGTGGGCCCTCTTTCTTGTT 60.537 55.000 25.70 0.00 0.00 2.83
112 113 1.073199 CGTGGGCCCTCTTTCTTGT 59.927 57.895 25.70 0.00 0.00 3.16
113 114 0.323629 TACGTGGGCCCTCTTTCTTG 59.676 55.000 25.70 8.00 0.00 3.02
114 115 0.323957 GTACGTGGGCCCTCTTTCTT 59.676 55.000 25.70 2.48 0.00 2.52
115 116 1.885163 CGTACGTGGGCCCTCTTTCT 61.885 60.000 25.70 4.45 0.00 2.52
116 117 1.447314 CGTACGTGGGCCCTCTTTC 60.447 63.158 25.70 10.18 0.00 2.62
117 118 2.660802 CGTACGTGGGCCCTCTTT 59.339 61.111 25.70 11.61 0.00 2.52
118 119 3.387947 CCGTACGTGGGCCCTCTT 61.388 66.667 25.70 16.26 0.00 2.85
119 120 3.674050 ATCCGTACGTGGGCCCTCT 62.674 63.158 25.70 11.87 0.00 3.69
120 121 3.152400 ATCCGTACGTGGGCCCTC 61.152 66.667 25.70 19.74 0.00 4.30
121 122 3.467226 CATCCGTACGTGGGCCCT 61.467 66.667 25.70 5.02 0.00 5.19
123 124 4.460683 TGCATCCGTACGTGGGCC 62.461 66.667 15.21 0.00 0.00 5.80
124 125 3.192922 GTGCATCCGTACGTGGGC 61.193 66.667 15.21 14.09 0.00 5.36
125 126 2.883730 CGTGCATCCGTACGTGGG 60.884 66.667 15.21 0.00 44.97 4.61
130 131 4.157120 AGGGGCGTGCATCCGTAC 62.157 66.667 0.00 0.00 0.00 3.67
131 132 4.155733 CAGGGGCGTGCATCCGTA 62.156 66.667 0.00 0.00 0.00 4.02
134 135 1.764571 TATACCAGGGGCGTGCATCC 61.765 60.000 0.00 0.00 0.00 3.51
135 136 0.320771 CTATACCAGGGGCGTGCATC 60.321 60.000 0.00 0.00 0.00 3.91
136 137 0.762842 TCTATACCAGGGGCGTGCAT 60.763 55.000 0.00 0.00 0.00 3.96
137 138 1.382009 TCTATACCAGGGGCGTGCA 60.382 57.895 0.00 0.00 0.00 4.57
138 139 1.113517 TCTCTATACCAGGGGCGTGC 61.114 60.000 0.00 0.00 0.00 5.34
139 140 1.068741 GTTCTCTATACCAGGGGCGTG 59.931 57.143 0.00 0.00 0.00 5.34
140 141 1.342674 TGTTCTCTATACCAGGGGCGT 60.343 52.381 0.00 0.00 0.00 5.68
141 142 1.410004 TGTTCTCTATACCAGGGGCG 58.590 55.000 0.00 0.00 0.00 6.13
142 143 2.972713 TCATGTTCTCTATACCAGGGGC 59.027 50.000 0.00 0.00 0.00 5.80
143 144 4.483950 TCTCATGTTCTCTATACCAGGGG 58.516 47.826 0.00 0.00 0.00 4.79
144 145 4.526262 CCTCTCATGTTCTCTATACCAGGG 59.474 50.000 0.00 0.00 0.00 4.45
145 146 5.389520 TCCTCTCATGTTCTCTATACCAGG 58.610 45.833 0.00 0.00 0.00 4.45
146 147 5.476599 CCTCCTCTCATGTTCTCTATACCAG 59.523 48.000 0.00 0.00 0.00 4.00
147 148 5.134509 TCCTCCTCTCATGTTCTCTATACCA 59.865 44.000 0.00 0.00 0.00 3.25
148 149 5.636123 TCCTCCTCTCATGTTCTCTATACC 58.364 45.833 0.00 0.00 0.00 2.73
149 150 5.710099 CCTCCTCCTCTCATGTTCTCTATAC 59.290 48.000 0.00 0.00 0.00 1.47
150 151 5.613116 TCCTCCTCCTCTCATGTTCTCTATA 59.387 44.000 0.00 0.00 0.00 1.31
151 152 4.418526 TCCTCCTCCTCTCATGTTCTCTAT 59.581 45.833 0.00 0.00 0.00 1.98
152 153 3.788708 TCCTCCTCCTCTCATGTTCTCTA 59.211 47.826 0.00 0.00 0.00 2.43
153 154 2.584965 TCCTCCTCCTCTCATGTTCTCT 59.415 50.000 0.00 0.00 0.00 3.10
154 155 2.693074 GTCCTCCTCCTCTCATGTTCTC 59.307 54.545 0.00 0.00 0.00 2.87
155 156 2.625617 GGTCCTCCTCCTCTCATGTTCT 60.626 54.545 0.00 0.00 0.00 3.01
156 157 1.760029 GGTCCTCCTCCTCTCATGTTC 59.240 57.143 0.00 0.00 0.00 3.18
157 158 1.079490 TGGTCCTCCTCCTCTCATGTT 59.921 52.381 0.00 0.00 34.23 2.71
158 159 0.712979 TGGTCCTCCTCCTCTCATGT 59.287 55.000 0.00 0.00 34.23 3.21
159 160 1.118838 GTGGTCCTCCTCCTCTCATG 58.881 60.000 0.00 0.00 34.23 3.07
160 161 0.712979 TGTGGTCCTCCTCCTCTCAT 59.287 55.000 0.00 0.00 34.23 2.90
161 162 0.251832 GTGTGGTCCTCCTCCTCTCA 60.252 60.000 0.00 0.00 34.23 3.27
162 163 0.973496 GGTGTGGTCCTCCTCCTCTC 60.973 65.000 0.00 0.00 34.23 3.20
163 164 1.079438 GGTGTGGTCCTCCTCCTCT 59.921 63.158 0.00 0.00 34.23 3.69
164 165 0.545548 AAGGTGTGGTCCTCCTCCTC 60.546 60.000 5.59 0.00 36.74 3.71
165 166 0.104409 AAAGGTGTGGTCCTCCTCCT 60.104 55.000 0.00 0.00 36.74 3.69
166 167 0.036875 CAAAGGTGTGGTCCTCCTCC 59.963 60.000 0.00 0.00 36.74 4.30
167 168 0.606673 GCAAAGGTGTGGTCCTCCTC 60.607 60.000 0.00 0.00 36.74 3.71
168 169 1.062488 AGCAAAGGTGTGGTCCTCCT 61.062 55.000 0.00 0.00 36.74 3.69
169 170 0.890996 CAGCAAAGGTGTGGTCCTCC 60.891 60.000 0.00 0.00 36.74 4.30
170 171 0.108585 TCAGCAAAGGTGTGGTCCTC 59.891 55.000 0.00 0.00 36.74 3.71
171 172 0.773644 ATCAGCAAAGGTGTGGTCCT 59.226 50.000 0.00 0.00 39.84 3.85
172 173 2.027192 TCTATCAGCAAAGGTGTGGTCC 60.027 50.000 0.00 0.00 32.43 4.46
173 174 3.334583 TCTATCAGCAAAGGTGTGGTC 57.665 47.619 0.00 0.00 32.43 4.02
174 175 3.788227 TTCTATCAGCAAAGGTGTGGT 57.212 42.857 0.00 0.00 32.43 4.16
175 176 3.820467 TGTTTCTATCAGCAAAGGTGTGG 59.180 43.478 0.00 0.00 32.43 4.17
176 177 4.516698 ACTGTTTCTATCAGCAAAGGTGTG 59.483 41.667 0.00 0.00 36.50 3.82
177 178 4.516698 CACTGTTTCTATCAGCAAAGGTGT 59.483 41.667 0.00 0.00 36.50 4.16
178 179 4.756642 TCACTGTTTCTATCAGCAAAGGTG 59.243 41.667 0.00 0.00 36.50 4.00
179 180 4.757149 GTCACTGTTTCTATCAGCAAAGGT 59.243 41.667 0.00 0.00 36.50 3.50
180 181 4.154918 GGTCACTGTTTCTATCAGCAAAGG 59.845 45.833 0.00 0.00 36.50 3.11
181 182 4.154918 GGGTCACTGTTTCTATCAGCAAAG 59.845 45.833 0.00 0.00 36.50 2.77
182 183 4.072131 GGGTCACTGTTTCTATCAGCAAA 58.928 43.478 0.00 0.00 36.50 3.68
183 184 3.072330 TGGGTCACTGTTTCTATCAGCAA 59.928 43.478 0.00 0.00 36.50 3.91
184 185 2.637382 TGGGTCACTGTTTCTATCAGCA 59.363 45.455 0.00 0.00 36.50 4.41
185 186 3.334583 TGGGTCACTGTTTCTATCAGC 57.665 47.619 0.00 0.00 36.50 4.26
186 187 4.568359 CGATTGGGTCACTGTTTCTATCAG 59.432 45.833 0.00 0.00 38.68 2.90
187 188 4.020573 ACGATTGGGTCACTGTTTCTATCA 60.021 41.667 0.00 0.00 0.00 2.15
188 189 4.504858 ACGATTGGGTCACTGTTTCTATC 58.495 43.478 0.00 0.00 0.00 2.08
189 190 4.553330 ACGATTGGGTCACTGTTTCTAT 57.447 40.909 0.00 0.00 0.00 1.98
190 191 4.062293 CAACGATTGGGTCACTGTTTCTA 58.938 43.478 0.00 0.00 0.00 2.10
191 192 2.878406 CAACGATTGGGTCACTGTTTCT 59.122 45.455 0.00 0.00 0.00 2.52
192 193 2.616842 ACAACGATTGGGTCACTGTTTC 59.383 45.455 0.00 0.00 34.12 2.78
193 194 2.650322 ACAACGATTGGGTCACTGTTT 58.350 42.857 0.00 0.00 34.12 2.83
194 195 2.341846 ACAACGATTGGGTCACTGTT 57.658 45.000 0.00 0.00 34.12 3.16
195 196 3.244422 ACATACAACGATTGGGTCACTGT 60.244 43.478 0.00 0.00 34.12 3.55
196 197 3.334691 ACATACAACGATTGGGTCACTG 58.665 45.455 0.00 0.00 34.12 3.66
197 198 3.695830 ACATACAACGATTGGGTCACT 57.304 42.857 0.00 0.00 34.12 3.41
198 199 3.749088 TGAACATACAACGATTGGGTCAC 59.251 43.478 0.00 0.00 34.12 3.67
199 200 4.009370 TGAACATACAACGATTGGGTCA 57.991 40.909 0.00 0.00 34.12 4.02
200 201 6.671614 TTATGAACATACAACGATTGGGTC 57.328 37.500 0.00 0.00 34.12 4.46
201 202 6.431543 TGTTTATGAACATACAACGATTGGGT 59.568 34.615 0.00 0.00 40.71 4.51
202 203 6.847400 TGTTTATGAACATACAACGATTGGG 58.153 36.000 0.00 0.00 40.71 4.12
203 204 7.272515 GGTTGTTTATGAACATACAACGATTGG 59.727 37.037 18.70 0.00 44.71 3.16
204 205 7.272515 GGGTTGTTTATGAACATACAACGATTG 59.727 37.037 18.70 0.00 44.71 2.67
205 206 7.040340 TGGGTTGTTTATGAACATACAACGATT 60.040 33.333 18.70 0.00 44.71 3.34
206 207 6.431543 TGGGTTGTTTATGAACATACAACGAT 59.568 34.615 18.70 0.00 44.71 3.73
207 208 5.763698 TGGGTTGTTTATGAACATACAACGA 59.236 36.000 18.70 12.33 44.71 3.85
208 209 6.003234 TGGGTTGTTTATGAACATACAACG 57.997 37.500 18.70 0.00 44.71 4.10
209 210 6.977213 ACTGGGTTGTTTATGAACATACAAC 58.023 36.000 17.85 17.85 44.71 3.32
210 211 6.773200 TGACTGGGTTGTTTATGAACATACAA 59.227 34.615 3.63 0.00 44.71 2.41
211 212 6.299922 TGACTGGGTTGTTTATGAACATACA 58.700 36.000 3.63 3.49 44.71 2.29
212 213 6.811253 TGACTGGGTTGTTTATGAACATAC 57.189 37.500 3.63 5.70 44.71 2.39
213 214 7.523052 GCTTTGACTGGGTTGTTTATGAACATA 60.523 37.037 3.63 0.00 44.71 2.29
214 215 6.723298 TTTGACTGGGTTGTTTATGAACAT 57.277 33.333 3.63 0.00 44.71 2.71
215 216 5.451242 GCTTTGACTGGGTTGTTTATGAACA 60.451 40.000 0.00 0.00 43.73 3.18
216 217 4.982295 GCTTTGACTGGGTTGTTTATGAAC 59.018 41.667 0.00 0.00 36.29 3.18
217 218 4.038642 GGCTTTGACTGGGTTGTTTATGAA 59.961 41.667 0.00 0.00 0.00 2.57
218 219 3.572255 GGCTTTGACTGGGTTGTTTATGA 59.428 43.478 0.00 0.00 0.00 2.15
219 220 3.320541 TGGCTTTGACTGGGTTGTTTATG 59.679 43.478 0.00 0.00 0.00 1.90
220 221 3.571590 TGGCTTTGACTGGGTTGTTTAT 58.428 40.909 0.00 0.00 0.00 1.40
221 222 3.019799 TGGCTTTGACTGGGTTGTTTA 57.980 42.857 0.00 0.00 0.00 2.01
222 223 1.859302 TGGCTTTGACTGGGTTGTTT 58.141 45.000 0.00 0.00 0.00 2.83
223 224 1.480545 GTTGGCTTTGACTGGGTTGTT 59.519 47.619 0.00 0.00 0.00 2.83
224 225 1.111277 GTTGGCTTTGACTGGGTTGT 58.889 50.000 0.00 0.00 0.00 3.32
225 226 0.389025 GGTTGGCTTTGACTGGGTTG 59.611 55.000 0.00 0.00 0.00 3.77
226 227 0.759060 GGGTTGGCTTTGACTGGGTT 60.759 55.000 0.00 0.00 0.00 4.11
227 228 1.152546 GGGTTGGCTTTGACTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
228 229 0.469892 AAGGGTTGGCTTTGACTGGG 60.470 55.000 0.00 0.00 0.00 4.45
229 230 1.886542 GTAAGGGTTGGCTTTGACTGG 59.113 52.381 0.00 0.00 0.00 4.00
230 231 2.582052 TGTAAGGGTTGGCTTTGACTG 58.418 47.619 0.00 0.00 0.00 3.51
231 232 3.421844 GATGTAAGGGTTGGCTTTGACT 58.578 45.455 0.00 0.00 0.00 3.41
232 233 2.161609 CGATGTAAGGGTTGGCTTTGAC 59.838 50.000 0.00 0.00 0.00 3.18
233 234 2.039216 TCGATGTAAGGGTTGGCTTTGA 59.961 45.455 0.00 0.00 0.00 2.69
234 235 2.161609 GTCGATGTAAGGGTTGGCTTTG 59.838 50.000 0.00 0.00 0.00 2.77
235 236 2.433436 GTCGATGTAAGGGTTGGCTTT 58.567 47.619 0.00 0.00 0.00 3.51
236 237 1.674817 CGTCGATGTAAGGGTTGGCTT 60.675 52.381 0.00 0.00 0.00 4.35
237 238 0.108329 CGTCGATGTAAGGGTTGGCT 60.108 55.000 0.00 0.00 0.00 4.75
238 239 0.108520 TCGTCGATGTAAGGGTTGGC 60.109 55.000 4.21 0.00 0.00 4.52
239 240 1.203994 ACTCGTCGATGTAAGGGTTGG 59.796 52.381 4.21 0.00 0.00 3.77
240 241 2.259618 CACTCGTCGATGTAAGGGTTG 58.740 52.381 4.21 0.00 0.00 3.77
241 242 1.203994 CCACTCGTCGATGTAAGGGTT 59.796 52.381 4.21 0.00 0.00 4.11
242 243 0.815734 CCACTCGTCGATGTAAGGGT 59.184 55.000 4.21 0.00 0.00 4.34
243 244 0.102481 CCCACTCGTCGATGTAAGGG 59.898 60.000 13.73 13.73 0.00 3.95
244 245 1.100510 TCCCACTCGTCGATGTAAGG 58.899 55.000 4.21 4.95 0.00 2.69
245 246 1.531264 CGTCCCACTCGTCGATGTAAG 60.531 57.143 4.21 0.00 0.00 2.34
246 247 0.448990 CGTCCCACTCGTCGATGTAA 59.551 55.000 4.21 0.00 0.00 2.41
247 248 1.985447 GCGTCCCACTCGTCGATGTA 61.985 60.000 4.21 0.00 0.00 2.29
256 257 1.376037 CCCTTCTTGCGTCCCACTC 60.376 63.158 0.00 0.00 0.00 3.51
349 350 2.093128 GCTTGGTCCGAATAAGAGGGAA 60.093 50.000 0.00 0.00 0.00 3.97
353 354 4.098044 TGACTAGCTTGGTCCGAATAAGAG 59.902 45.833 14.24 0.00 33.22 2.85
395 396 1.225854 GAGCGCGCACATCTGTTTC 60.226 57.895 35.10 14.89 0.00 2.78
404 405 2.780149 AAAATGGTTCGAGCGCGCAC 62.780 55.000 35.10 27.04 37.46 5.34
408 409 1.713932 GTTTGAAAATGGTTCGAGCGC 59.286 47.619 0.00 0.00 0.00 5.92
428 429 3.740128 ATCTAGCCAAGGGTGCGCG 62.740 63.158 0.00 0.00 0.00 6.86
476 477 2.040939 TGTGTTCACGGGGAAACTCTA 58.959 47.619 0.00 0.00 37.23 2.43
477 478 0.834612 TGTGTTCACGGGGAAACTCT 59.165 50.000 0.00 0.00 37.23 3.24
478 479 1.535462 CATGTGTTCACGGGGAAACTC 59.465 52.381 0.00 0.00 37.23 3.01
479 480 1.142060 TCATGTGTTCACGGGGAAACT 59.858 47.619 0.00 0.00 37.23 2.66
480 481 1.600023 TCATGTGTTCACGGGGAAAC 58.400 50.000 0.00 0.00 37.23 2.78
481 482 1.950909 GTTCATGTGTTCACGGGGAAA 59.049 47.619 0.00 0.00 37.23 3.13
484 485 1.313772 TTGTTCATGTGTTCACGGGG 58.686 50.000 0.00 0.00 0.00 5.73
514 515 3.014604 AGACAAAGACGGACTCTTTCG 57.985 47.619 0.00 0.00 44.68 3.46
535 536 8.664211 AGACTTAAGAAAGTTTGAATCGTCTT 57.336 30.769 10.09 0.00 46.09 3.01
581 582 7.831193 AGGTGACACTTTTGCTAATCTGATAAT 59.169 33.333 5.39 0.00 0.00 1.28
610 611 5.350091 ACATTTGTTTTTGTAAAAGTGCGCT 59.650 32.000 9.73 0.00 0.00 5.92
611 612 5.555552 ACATTTGTTTTTGTAAAAGTGCGC 58.444 33.333 0.00 0.00 0.00 6.09
730 731 7.638444 TCTCTTATCAATTATTCACCCAACCA 58.362 34.615 0.00 0.00 0.00 3.67
750 751 4.896482 ACTCTCACACTGGTAACTTCTCTT 59.104 41.667 0.00 0.00 37.61 2.85
784 785 1.622725 GGAGTGGAGTGTGGGAGGTAT 60.623 57.143 0.00 0.00 0.00 2.73
834 841 1.466856 TTGACGCGTGGGACTAGTAT 58.533 50.000 20.70 0.00 0.00 2.12
881 888 1.501741 CGGTTGGGCAATGAAGTCG 59.498 57.895 0.00 0.00 0.00 4.18
995 1069 1.886542 CGTCACCTGGATCCATCGATA 59.113 52.381 16.63 0.00 0.00 2.92
997 1071 2.016393 GCGTCACCTGGATCCATCGA 62.016 60.000 16.63 9.32 0.00 3.59
1016 1090 1.957877 GAGAAGGATCTAGGTCGTGGG 59.042 57.143 0.00 0.00 35.54 4.61
1124 1213 3.490031 ATCCAGCACCACACCGCAA 62.490 57.895 0.00 0.00 0.00 4.85
1125 1214 3.952508 ATCCAGCACCACACCGCA 61.953 61.111 0.00 0.00 0.00 5.69
1530 1619 2.897271 TGGCACCCTGAAATACATGT 57.103 45.000 2.69 2.69 0.00 3.21
1531 1620 3.448301 ACATTGGCACCCTGAAATACATG 59.552 43.478 0.00 0.00 0.00 3.21
1532 1621 3.701040 GACATTGGCACCCTGAAATACAT 59.299 43.478 0.00 0.00 0.00 2.29
1533 1622 3.088532 GACATTGGCACCCTGAAATACA 58.911 45.455 0.00 0.00 0.00 2.29
1534 1623 2.427095 GGACATTGGCACCCTGAAATAC 59.573 50.000 0.00 0.00 0.00 1.89
1535 1624 2.042297 TGGACATTGGCACCCTGAAATA 59.958 45.455 0.00 0.00 0.00 1.40
1536 1625 1.203162 TGGACATTGGCACCCTGAAAT 60.203 47.619 0.00 0.00 0.00 2.17
1537 1626 0.187117 TGGACATTGGCACCCTGAAA 59.813 50.000 0.00 0.00 0.00 2.69
1538 1627 0.409092 ATGGACATTGGCACCCTGAA 59.591 50.000 0.00 0.00 0.00 3.02
1539 1628 0.323633 CATGGACATTGGCACCCTGA 60.324 55.000 0.00 0.00 0.00 3.86
1540 1629 0.323633 TCATGGACATTGGCACCCTG 60.324 55.000 0.00 0.00 0.00 4.45
1637 1848 6.998802 AGCCTGGATTTACATCACTATACTC 58.001 40.000 0.00 0.00 0.00 2.59
1665 1876 8.818622 ACTACTTATTGGTATGACAGACAGTA 57.181 34.615 2.14 0.58 0.00 2.74
1699 1910 9.515020 CAAGAACTGACTGAGATCTACTTATTC 57.485 37.037 0.00 0.00 32.78 1.75
1746 1957 0.110104 CTGGGATCTCCAATCCAGCC 59.890 60.000 6.42 0.00 46.51 4.85
1780 1991 4.471904 TCTACAACAGCTAACCAGATGG 57.528 45.455 0.00 0.00 42.67 3.51
1792 2003 7.099266 TGCCATTTGGATAATTCTACAACAG 57.901 36.000 0.00 0.00 37.39 3.16
1798 2009 6.430925 CCGAAGATGCCATTTGGATAATTCTA 59.569 38.462 0.00 0.00 37.39 2.10
1804 2015 3.390967 TCTCCGAAGATGCCATTTGGATA 59.609 43.478 0.00 0.00 39.10 2.59
1812 2023 1.221840 GCCTTCTCCGAAGATGCCA 59.778 57.895 5.24 0.00 0.00 4.92
1837 2048 1.819288 TCGAGTGAGATCTCCAACACC 59.181 52.381 20.03 7.65 34.33 4.16
1846 2057 4.737765 GCTGTGTCTTTATCGAGTGAGATC 59.262 45.833 0.00 0.00 32.39 2.75
1855 2066 2.863739 TCTGTCGCTGTGTCTTTATCG 58.136 47.619 0.00 0.00 0.00 2.92
1859 2070 2.545526 CACAATCTGTCGCTGTGTCTTT 59.454 45.455 0.00 0.00 36.52 2.52
1860 2071 2.138320 CACAATCTGTCGCTGTGTCTT 58.862 47.619 0.00 0.00 36.52 3.01
1861 2072 1.788258 CACAATCTGTCGCTGTGTCT 58.212 50.000 0.00 0.00 36.52 3.41
1863 2074 3.686622 ACACAATCTGTCGCTGTGT 57.313 47.368 1.36 1.36 46.71 3.72
1864 2075 1.661178 GCAACACAATCTGTCGCTGTG 60.661 52.381 0.08 0.08 44.81 3.66
1865 2076 0.588252 GCAACACAATCTGTCGCTGT 59.412 50.000 0.00 0.00 30.29 4.40
1866 2077 0.870393 AGCAACACAATCTGTCGCTG 59.130 50.000 0.00 0.00 29.51 5.18
1867 2078 1.532868 GAAGCAACACAATCTGTCGCT 59.467 47.619 0.00 0.00 31.22 4.93
1868 2079 1.264020 TGAAGCAACACAATCTGTCGC 59.736 47.619 0.00 0.00 30.29 5.19
1869 2080 2.802247 TCTGAAGCAACACAATCTGTCG 59.198 45.455 0.00 0.00 30.29 4.35
1870 2081 4.720090 CATCTGAAGCAACACAATCTGTC 58.280 43.478 0.00 0.00 30.29 3.51
1903 2114 0.332293 TGGGCCTCATGCATCTGAAA 59.668 50.000 4.53 0.00 43.89 2.69
1926 2137 4.264352 TGGAGCAATGGGAGGAAATTAAGT 60.264 41.667 0.00 0.00 0.00 2.24
1982 2193 4.832823 CCTTGAAACCCTGGTTCAGTAATT 59.167 41.667 1.29 0.00 37.35 1.40
2029 2240 6.461092 GGTTTCTGAAATCGGAGTTCCTTTTT 60.461 38.462 14.79 0.00 32.05 1.94
2030 2241 5.009710 GGTTTCTGAAATCGGAGTTCCTTTT 59.990 40.000 14.79 0.00 32.05 2.27
2031 2242 4.519350 GGTTTCTGAAATCGGAGTTCCTTT 59.481 41.667 14.79 0.00 32.05 3.11
2032 2243 4.072839 GGTTTCTGAAATCGGAGTTCCTT 58.927 43.478 14.79 0.00 32.05 3.36
2033 2244 3.559384 GGGTTTCTGAAATCGGAGTTCCT 60.559 47.826 14.79 0.00 32.05 3.36
2034 2245 2.747989 GGGTTTCTGAAATCGGAGTTCC 59.252 50.000 14.79 0.27 32.05 3.62
2035 2246 3.188667 GTGGGTTTCTGAAATCGGAGTTC 59.811 47.826 11.01 11.01 32.05 3.01
2036 2247 3.146847 GTGGGTTTCTGAAATCGGAGTT 58.853 45.455 6.06 0.00 32.05 3.01
2037 2248 2.372172 AGTGGGTTTCTGAAATCGGAGT 59.628 45.455 6.06 0.00 32.05 3.85
2038 2249 2.744202 CAGTGGGTTTCTGAAATCGGAG 59.256 50.000 6.06 0.00 35.20 4.63
2039 2250 2.552155 CCAGTGGGTTTCTGAAATCGGA 60.552 50.000 6.06 0.00 35.20 4.55
2040 2251 1.812571 CCAGTGGGTTTCTGAAATCGG 59.187 52.381 6.06 0.00 35.20 4.18
2041 2252 2.778299 TCCAGTGGGTTTCTGAAATCG 58.222 47.619 9.92 0.00 35.20 3.34
2099 2310 9.490663 GCTTGATTTTAGTATCACACAACATAC 57.509 33.333 0.00 0.00 34.41 2.39
2107 2318 6.061022 TGGGAGCTTGATTTTAGTATCACA 57.939 37.500 0.00 0.00 34.41 3.58
2287 2498 2.343544 GGTCGAACGGTTAAATCTCACG 59.656 50.000 0.00 0.00 0.00 4.35
2306 2517 1.695242 TCAGGAACACACATTACGGGT 59.305 47.619 0.00 0.00 0.00 5.28
2309 2520 7.492669 AGAATAAGATCAGGAACACACATTACG 59.507 37.037 0.00 0.00 0.00 3.18
2363 2731 0.468226 AGACACGGAAGACAAAGCCA 59.532 50.000 0.00 0.00 0.00 4.75
2413 2784 2.796593 GCACACAGTTTGCAAGAAATCC 59.203 45.455 6.82 0.00 39.93 3.01
2484 2855 1.669265 GGGCATACGCTGTTTAAGGAC 59.331 52.381 0.00 0.00 38.60 3.85
2518 2889 4.520492 CAGGGGTTATATTCATCAAGTGGC 59.480 45.833 0.00 0.00 0.00 5.01
2527 2898 6.385443 AGATCAGACTCAGGGGTTATATTCA 58.615 40.000 0.00 0.00 0.00 2.57
2596 2967 2.028561 ACCCCCATTTGCTTCACATT 57.971 45.000 0.00 0.00 0.00 2.71
2612 2983 0.872021 CAGTATCGCTCGCTGAACCC 60.872 60.000 0.00 0.00 32.39 4.11
2855 3226 4.383552 GGAATAGTGATCACAGTGCTTCCT 60.384 45.833 27.02 6.18 38.33 3.36
2864 3235 4.937620 GCACTTTCAGGAATAGTGATCACA 59.062 41.667 27.02 13.67 41.33 3.58
2932 3303 1.873591 GCCGAAGAAAAGAGTCAAGCA 59.126 47.619 0.00 0.00 0.00 3.91
2950 3321 1.188863 AGCATTGGAATGTTCAGGCC 58.811 50.000 0.00 0.00 38.65 5.19
2954 3325 2.694628 GCCCATAGCATTGGAATGTTCA 59.305 45.455 6.52 0.00 42.97 3.18
2955 3326 3.375782 GCCCATAGCATTGGAATGTTC 57.624 47.619 6.52 0.00 42.97 3.18
2993 3364 7.038587 ACACATACAGATTCAGGTGGTAAAGTA 60.039 37.037 0.00 0.00 0.00 2.24
3025 3396 3.947196 ACTTGAAGACACTGCAACATCAA 59.053 39.130 0.00 0.00 0.00 2.57
3031 3402 2.710377 ACACACTTGAAGACACTGCAA 58.290 42.857 0.00 0.00 0.00 4.08
3056 3427 1.193203 GTGTCAGACACTGCAACATCG 59.807 52.381 24.23 0.00 45.27 3.84
3074 3445 4.959596 AGCAGCATCAAACATAGAAGTG 57.040 40.909 0.00 0.00 0.00 3.16
3089 3460 0.740149 CAAATTCCGGCATAGCAGCA 59.260 50.000 0.00 0.00 35.83 4.41
3096 3467 1.745087 CACTGTAGCAAATTCCGGCAT 59.255 47.619 0.00 0.00 0.00 4.40
3129 3500 2.045524 AGATACTACAGCAGCAGCCAT 58.954 47.619 0.00 0.00 43.56 4.40
3147 3518 4.711846 ACCATCAGACACTGCAGTATTAGA 59.288 41.667 21.20 15.52 0.00 2.10
3148 3519 5.016051 ACCATCAGACACTGCAGTATTAG 57.984 43.478 21.20 9.88 0.00 1.73
3149 3520 6.731292 ATACCATCAGACACTGCAGTATTA 57.269 37.500 21.20 3.99 0.00 0.98
3150 3521 3.988976 ACCATCAGACACTGCAGTATT 57.011 42.857 21.20 9.71 0.00 1.89
3151 3522 5.620738 AATACCATCAGACACTGCAGTAT 57.379 39.130 21.20 8.75 0.00 2.12
3152 3523 6.462909 CCATAATACCATCAGACACTGCAGTA 60.463 42.308 21.20 3.40 0.00 2.74
3153 3524 3.988976 AATACCATCAGACACTGCAGT 57.011 42.857 15.25 15.25 0.00 4.40
3154 3525 4.753610 CCATAATACCATCAGACACTGCAG 59.246 45.833 13.48 13.48 0.00 4.41
3155 3526 4.707105 CCATAATACCATCAGACACTGCA 58.293 43.478 0.00 0.00 0.00 4.41
3156 3527 3.499918 GCCATAATACCATCAGACACTGC 59.500 47.826 0.00 0.00 0.00 4.40
3157 3528 4.965814 AGCCATAATACCATCAGACACTG 58.034 43.478 0.00 0.00 0.00 3.66
3158 3529 5.841237 AGTAGCCATAATACCATCAGACACT 59.159 40.000 0.00 0.00 0.00 3.55
3159 3530 5.928839 CAGTAGCCATAATACCATCAGACAC 59.071 44.000 0.00 0.00 0.00 3.67
3160 3531 5.511373 GCAGTAGCCATAATACCATCAGACA 60.511 44.000 0.00 0.00 33.58 3.41
3161 3532 4.932200 GCAGTAGCCATAATACCATCAGAC 59.068 45.833 0.00 0.00 33.58 3.51
3178 3549 2.669300 ATCAGACACTGCAGCAGTAG 57.331 50.000 27.80 22.08 43.43 2.57
3213 3584 3.555956 ACTGCAGTAGAGTTCAAAACACG 59.444 43.478 20.16 0.00 0.00 4.49
3217 3588 2.878406 GGCACTGCAGTAGAGTTCAAAA 59.122 45.455 21.20 0.00 0.00 2.44
3233 3604 4.767578 ATCAGTCATAACATCAGGCACT 57.232 40.909 0.00 0.00 43.88 4.40
3274 3645 5.178797 TGCTCCTCTTCTTAACAGTATTGC 58.821 41.667 0.00 0.00 0.00 3.56
3310 3681 0.250295 ACCATGTTCAGTCACCACCG 60.250 55.000 0.00 0.00 0.00 4.94
3354 3725 3.113745 CTCCATTGGCGCACATCC 58.886 61.111 10.83 0.00 0.00 3.51
3476 3847 5.042463 TGTTGGAACAGACTTCAATACCA 57.958 39.130 0.00 0.00 42.39 3.25
3488 3859 3.441572 GTCCCATGAGATTGTTGGAACAG 59.558 47.826 0.00 0.00 42.39 3.16
3603 3974 3.578716 TCTCTCACGAAGATGGGAAGTTT 59.421 43.478 0.00 0.00 32.19 2.66
3680 4051 3.065925 GCTACGGGTGAAGAGTACGTAAT 59.934 47.826 0.00 0.00 39.20 1.89
3685 4056 3.012518 TGTAGCTACGGGTGAAGAGTAC 58.987 50.000 18.74 0.00 0.00 2.73
3768 4139 2.488204 TCGAAGATGTGCCATTTCCA 57.512 45.000 0.00 0.00 0.00 3.53
3769 4140 5.695851 ATAATCGAAGATGTGCCATTTCC 57.304 39.130 0.00 0.00 45.12 3.13
3775 4146 6.963796 AGATGAAAATAATCGAAGATGTGCC 58.036 36.000 0.00 0.00 45.12 5.01
3790 4162 8.637986 TGGCTGTGTAAGTTTTTAGATGAAAAT 58.362 29.630 0.00 0.00 36.89 1.82
3813 4185 4.372656 AGACGAAATAATGTCTAGCTGGC 58.627 43.478 0.00 0.00 43.36 4.85
4110 4482 0.535102 CGAAAGGCCCTGAGTGTTGT 60.535 55.000 0.00 0.00 0.00 3.32
4118 4490 0.036010 ACAGTCATCGAAAGGCCCTG 60.036 55.000 0.00 0.00 0.00 4.45
4127 4499 4.740205 GCGAATCAGATAAACAGTCATCGA 59.260 41.667 0.00 0.00 0.00 3.59
4129 4501 5.973651 TGCGAATCAGATAAACAGTCATC 57.026 39.130 0.00 0.00 0.00 2.92
4323 4697 7.446319 ACGGCACAGACATACATACTAATACTA 59.554 37.037 0.00 0.00 0.00 1.82
4324 4698 6.264744 ACGGCACAGACATACATACTAATACT 59.735 38.462 0.00 0.00 0.00 2.12
4325 4699 6.362551 CACGGCACAGACATACATACTAATAC 59.637 42.308 0.00 0.00 0.00 1.89
4326 4700 6.040054 ACACGGCACAGACATACATACTAATA 59.960 38.462 0.00 0.00 0.00 0.98
4327 4701 5.163447 ACACGGCACAGACATACATACTAAT 60.163 40.000 0.00 0.00 0.00 1.73
4328 4702 4.158949 ACACGGCACAGACATACATACTAA 59.841 41.667 0.00 0.00 0.00 2.24
4348 4722 1.068748 CCATCTGAAGCAGCAACACAC 60.069 52.381 0.00 0.00 0.00 3.82
4411 4785 8.670135 ACATAATCAAATTTGAACCATGCATTG 58.330 29.630 23.91 13.09 41.13 2.82
4437 4811 2.916269 TGACCATTCATCCTACCCACAA 59.084 45.455 0.00 0.00 0.00 3.33
4516 4890 9.581289 TTATTTTCAGGTCCAGAGAAATTACAA 57.419 29.630 5.37 0.00 32.00 2.41
4520 4894 9.764363 GTTTTTATTTTCAGGTCCAGAGAAATT 57.236 29.630 5.37 5.19 32.00 1.82
4521 4895 8.923270 TGTTTTTATTTTCAGGTCCAGAGAAAT 58.077 29.630 5.37 7.09 32.00 2.17
4522 4896 8.299990 TGTTTTTATTTTCAGGTCCAGAGAAA 57.700 30.769 0.00 0.00 0.00 2.52
4523 4897 7.889873 TGTTTTTATTTTCAGGTCCAGAGAA 57.110 32.000 0.00 0.00 0.00 2.87
4524 4898 7.889873 TTGTTTTTATTTTCAGGTCCAGAGA 57.110 32.000 0.00 0.00 0.00 3.10
4549 4923 9.953697 GTGTGTATGTTAACTTGTTTCCAAATA 57.046 29.630 7.22 0.00 0.00 1.40
4550 4924 8.470805 TGTGTGTATGTTAACTTGTTTCCAAAT 58.529 29.630 7.22 0.00 0.00 2.32
4551 4925 7.827701 TGTGTGTATGTTAACTTGTTTCCAAA 58.172 30.769 7.22 0.00 0.00 3.28
4552 4926 7.392494 TGTGTGTATGTTAACTTGTTTCCAA 57.608 32.000 7.22 0.00 0.00 3.53
4553 4927 7.500892 AGATGTGTGTATGTTAACTTGTTTCCA 59.499 33.333 7.22 0.00 0.00 3.53
4554 4928 7.871853 AGATGTGTGTATGTTAACTTGTTTCC 58.128 34.615 7.22 0.00 0.00 3.13
4559 4933 9.277565 GCAATTAGATGTGTGTATGTTAACTTG 57.722 33.333 7.22 0.00 0.00 3.16
4560 4934 8.458843 GGCAATTAGATGTGTGTATGTTAACTT 58.541 33.333 7.22 3.03 0.00 2.66
4561 4935 7.829211 AGGCAATTAGATGTGTGTATGTTAACT 59.171 33.333 7.22 0.00 0.00 2.24
4562 4936 7.985476 AGGCAATTAGATGTGTGTATGTTAAC 58.015 34.615 0.00 0.00 0.00 2.01
4563 4937 8.458052 CAAGGCAATTAGATGTGTGTATGTTAA 58.542 33.333 0.00 0.00 0.00 2.01
4564 4938 7.609918 ACAAGGCAATTAGATGTGTGTATGTTA 59.390 33.333 0.00 0.00 0.00 2.41
4565 4939 6.434028 ACAAGGCAATTAGATGTGTGTATGTT 59.566 34.615 0.00 0.00 0.00 2.71
4566 4940 5.945784 ACAAGGCAATTAGATGTGTGTATGT 59.054 36.000 0.00 0.00 0.00 2.29
4567 4941 6.441093 ACAAGGCAATTAGATGTGTGTATG 57.559 37.500 0.00 0.00 0.00 2.39
4568 4942 5.294306 CGACAAGGCAATTAGATGTGTGTAT 59.706 40.000 0.00 0.00 0.00 2.29
4569 4943 4.629634 CGACAAGGCAATTAGATGTGTGTA 59.370 41.667 0.00 0.00 0.00 2.90
4570 4944 3.436704 CGACAAGGCAATTAGATGTGTGT 59.563 43.478 0.00 0.00 0.00 3.72
4571 4945 3.684305 TCGACAAGGCAATTAGATGTGTG 59.316 43.478 0.00 0.00 0.00 3.82
4572 4946 3.937814 TCGACAAGGCAATTAGATGTGT 58.062 40.909 0.00 0.00 0.00 3.72
4573 4947 4.728882 GCTTCGACAAGGCAATTAGATGTG 60.729 45.833 0.00 0.00 0.00 3.21
4574 4948 3.375299 GCTTCGACAAGGCAATTAGATGT 59.625 43.478 0.00 0.00 0.00 3.06
4575 4949 3.624861 AGCTTCGACAAGGCAATTAGATG 59.375 43.478 0.00 0.00 0.00 2.90
4576 4950 3.878778 AGCTTCGACAAGGCAATTAGAT 58.121 40.909 0.00 0.00 0.00 1.98
4577 4951 3.334583 AGCTTCGACAAGGCAATTAGA 57.665 42.857 0.00 0.00 0.00 2.10
4578 4952 7.426929 AATATAGCTTCGACAAGGCAATTAG 57.573 36.000 0.00 0.00 0.00 1.73
4579 4953 9.502091 AATAATATAGCTTCGACAAGGCAATTA 57.498 29.630 0.00 0.00 0.00 1.40
4580 4954 7.986085 ATAATATAGCTTCGACAAGGCAATT 57.014 32.000 0.00 0.00 0.00 2.32
4581 4955 7.986085 AATAATATAGCTTCGACAAGGCAAT 57.014 32.000 0.00 0.00 0.00 3.56
4582 4956 7.801716 AAATAATATAGCTTCGACAAGGCAA 57.198 32.000 0.00 0.00 0.00 4.52
4583 4957 7.639039 CAAAATAATATAGCTTCGACAAGGCA 58.361 34.615 0.00 0.00 0.00 4.75
4584 4958 6.578919 GCAAAATAATATAGCTTCGACAAGGC 59.421 38.462 0.00 0.00 0.00 4.35
4585 4959 7.639039 TGCAAAATAATATAGCTTCGACAAGG 58.361 34.615 0.00 0.00 0.00 3.61
4586 4960 9.669353 AATGCAAAATAATATAGCTTCGACAAG 57.331 29.630 0.00 0.00 0.00 3.16
4605 4979 6.535865 GCATTTTGGATGTCATCTAATGCAAA 59.464 34.615 30.13 21.53 41.86 3.68
4606 4980 6.044046 GCATTTTGGATGTCATCTAATGCAA 58.956 36.000 30.13 18.38 41.86 4.08
4607 4981 5.127356 TGCATTTTGGATGTCATCTAATGCA 59.873 36.000 31.79 31.79 45.01 3.96
4608 4982 5.593968 TGCATTTTGGATGTCATCTAATGC 58.406 37.500 29.39 29.39 42.17 3.56
4609 4983 8.657074 AAATGCATTTTGGATGTCATCTAATG 57.343 30.769 18.99 16.97 29.59 1.90
4624 4998 9.949174 GTTATTTTCTCAACCAAAATGCATTTT 57.051 25.926 27.73 27.73 40.37 1.82
4625 4999 8.567104 GGTTATTTTCTCAACCAAAATGCATTT 58.433 29.630 18.99 18.99 43.13 2.32
4638 5012 3.004944 GCGTGGTTGGGTTATTTTCTCAA 59.995 43.478 0.00 0.00 0.00 3.02
4639 5013 2.554893 GCGTGGTTGGGTTATTTTCTCA 59.445 45.455 0.00 0.00 0.00 3.27
4640 5014 2.817844 AGCGTGGTTGGGTTATTTTCTC 59.182 45.455 0.00 0.00 0.00 2.87
4641 5015 2.556622 CAGCGTGGTTGGGTTATTTTCT 59.443 45.455 0.00 0.00 0.00 2.52
4675 5049 8.784043 ACTTTGCATTTAAGTACCAGTTTCTAG 58.216 33.333 0.33 0.00 34.22 2.43
4692 5066 4.562552 CCCCCGAAACATAAACTTTGCATT 60.563 41.667 0.00 0.00 0.00 3.56
4705 5079 1.203087 TCAGTAGAGACCCCCGAAACA 60.203 52.381 0.00 0.00 0.00 2.83
4710 5084 3.156288 TCATATCAGTAGAGACCCCCG 57.844 52.381 0.00 0.00 0.00 5.73
4735 5109 3.248266 CAAATAAGCTTCCAGCAGCAAC 58.752 45.455 0.00 0.00 45.56 4.17
4819 5193 5.401376 TCAACTCTAGAATGTCGTTTTGTCG 59.599 40.000 0.00 0.00 0.00 4.35
4884 5258 6.594788 AAACATAAACTGCAAGATGTGGAT 57.405 33.333 3.91 0.00 37.43 3.41
4889 5263 4.931002 CCCCAAAACATAAACTGCAAGATG 59.069 41.667 0.00 0.00 37.43 2.90
4984 5896 2.794910 CGTAATCAAGGCGATGAACGAT 59.205 45.455 12.25 0.00 42.61 3.73
4998 5910 0.108041 GGGGACCGCTTTCGTAATCA 60.108 55.000 0.24 0.00 40.86 2.57
5030 5942 4.585162 TGGTTTTCCATAACAATGAACCGT 59.415 37.500 0.00 0.00 46.22 4.83
5075 5987 4.491409 GAGGAAGGGGAAGGGCGC 62.491 72.222 0.00 0.00 0.00 6.53
5096 6008 9.331282 GTAAGAAAATAGGTAGAGATTGCACAT 57.669 33.333 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.