Multiple sequence alignment - TraesCS6D01G383800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G383800 chr6D 100.000 6032 0 0 1 6032 462541916 462535885 0.000000e+00 11140.0
1 TraesCS6D01G383800 chr6B 92.563 3308 149 35 938 4204 705162945 705159694 0.000000e+00 4656.0
2 TraesCS6D01G383800 chr6B 90.179 896 55 16 4246 5133 705159698 705158828 0.000000e+00 1136.0
3 TraesCS6D01G383800 chr6B 89.353 479 35 9 1 476 705164396 705163931 6.730000e-164 588.0
4 TraesCS6D01G383800 chr6B 91.951 410 28 3 5144 5549 705158779 705158371 2.440000e-158 569.0
5 TraesCS6D01G383800 chr6B 82.979 235 15 13 520 741 705163641 705163419 7.980000e-44 189.0
6 TraesCS6D01G383800 chr6A 92.118 3121 163 49 526 3599 609384134 609381050 0.000000e+00 4324.0
7 TraesCS6D01G383800 chr6A 92.754 1946 75 14 3625 5549 609381052 609379152 0.000000e+00 2752.0
8 TraesCS6D01G383800 chr6A 93.190 279 13 3 1 273 609384540 609384262 7.280000e-109 405.0
9 TraesCS6D01G383800 chr6A 96.610 118 3 1 274 391 30502476 30502360 1.720000e-45 195.0
10 TraesCS6D01G383800 chr6A 94.915 118 5 1 274 391 30523592 30523476 3.710000e-42 183.0
11 TraesCS6D01G383800 chr6A 96.040 101 3 1 436 535 609384266 609384166 4.840000e-36 163.0
12 TraesCS6D01G383800 chr6A 78.710 155 20 5 5664 5817 609378963 609378821 2.320000e-14 91.6
13 TraesCS6D01G383800 chr7D 94.888 489 18 4 3098 3579 60317390 60317878 0.000000e+00 758.0
14 TraesCS6D01G383800 chr7D 94.683 489 19 4 3098 3579 564007557 564008045 0.000000e+00 752.0
15 TraesCS6D01G383800 chr7D 95.798 119 5 0 274 392 126608262 126608144 6.170000e-45 193.0
16 TraesCS6D01G383800 chrUn 94.683 489 19 4 3098 3579 96655718 96656206 0.000000e+00 752.0
17 TraesCS6D01G383800 chr2D 94.683 489 19 4 3098 3579 88747598 88747110 0.000000e+00 752.0
18 TraesCS6D01G383800 chr2D 90.780 141 13 0 273 413 97645489 97645349 7.980000e-44 189.0
19 TraesCS6D01G383800 chr1D 94.683 489 19 4 3098 3579 453842179 453841691 0.000000e+00 752.0
20 TraesCS6D01G383800 chr1D 94.274 489 20 5 3098 3579 484861976 484861489 0.000000e+00 741.0
21 TraesCS6D01G383800 chr4D 94.479 489 20 4 3098 3579 492526690 492526202 0.000000e+00 747.0
22 TraesCS6D01G383800 chr4B 92.500 160 10 2 274 431 560942222 560942063 1.690000e-55 228.0
23 TraesCS6D01G383800 chr2B 90.643 171 13 3 274 442 155134871 155134702 2.190000e-54 224.0
24 TraesCS6D01G383800 chr1A 89.091 165 13 4 274 435 259014519 259014681 3.690000e-47 200.0
25 TraesCS6D01G383800 chr1A 90.977 133 12 0 274 406 259013717 259013585 4.800000e-41 180.0
26 TraesCS6D01G383800 chr5D 86.905 168 9 7 274 429 168666506 168666672 6.210000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G383800 chr6D 462535885 462541916 6031 True 11140.00 11140 100.0000 1 6032 1 chr6D.!!$R1 6031
1 TraesCS6D01G383800 chr6B 705158371 705164396 6025 True 1427.60 4656 89.4050 1 5549 5 chr6B.!!$R1 5548
2 TraesCS6D01G383800 chr6A 609378821 609384540 5719 True 1547.12 4324 90.5624 1 5817 5 chr6A.!!$R3 5816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 1265 1.001641 GACTGGGTGAGCAGGCATT 60.002 57.895 0.00 0.0 0.00 3.56 F
1442 2113 0.733223 GGTTGCTCGAGGTTCGTCTC 60.733 60.000 15.58 0.0 41.35 3.36 F
2385 3073 0.445436 GTTGTGCATCAAGAGCGGAG 59.555 55.000 0.00 0.0 36.66 4.63 F
2712 3401 0.320771 AGTCATCAGTGCGTGTTCCC 60.321 55.000 0.00 0.0 0.00 3.97 F
3936 4633 0.534877 TTCTGGTTGCTGATGCGTGT 60.535 50.000 0.00 0.0 43.34 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 2503 0.533951 GAGAAAAGCATGGGCAAGGG 59.466 55.000 0.00 0.0 44.61 3.95 R
2454 3142 1.133513 ACAGTGGCCCACAAATCAGAA 60.134 47.619 17.80 0.0 36.74 3.02 R
3460 4156 0.620556 GGCAAACATCCTCCTCCTCA 59.379 55.000 0.00 0.0 0.00 3.86 R
4227 4926 1.555075 AGCCATACAGGACACGACAAT 59.445 47.619 0.00 0.0 41.22 2.71 R
5815 6641 0.034767 TGCAATCAGGCCAGAGGAAG 60.035 55.000 5.01 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
275 282 1.579429 GGCCACGCGAGAAAATTGT 59.421 52.632 15.93 0.00 0.00 2.71
277 284 1.198178 GGCCACGCGAGAAAATTGTTA 59.802 47.619 15.93 0.00 0.00 2.41
279 286 2.908626 GCCACGCGAGAAAATTGTTAAG 59.091 45.455 15.93 0.00 0.00 1.85
280 287 3.488489 CCACGCGAGAAAATTGTTAAGG 58.512 45.455 15.93 0.00 0.00 2.69
286 294 7.696453 CACGCGAGAAAATTGTTAAGGATTAAT 59.304 33.333 15.93 0.00 43.30 1.40
322 330 4.890088 TCAATGCTTAAGTCGGTTGTAGT 58.110 39.130 4.02 0.00 0.00 2.73
344 352 7.179076 AGTTACCGACATTGTAATCCTAACT 57.821 36.000 0.00 0.00 31.41 2.24
355 363 7.681939 TTGTAATCCTAACTGCCTTGTAAAG 57.318 36.000 0.00 0.00 45.69 1.85
356 364 6.775708 TGTAATCCTAACTGCCTTGTAAAGT 58.224 36.000 0.00 0.00 44.25 2.66
357 365 6.653320 TGTAATCCTAACTGCCTTGTAAAGTG 59.347 38.462 0.00 0.00 44.25 3.16
358 366 4.015872 TCCTAACTGCCTTGTAAAGTGG 57.984 45.455 0.00 0.00 44.25 4.00
359 367 3.081804 CCTAACTGCCTTGTAAAGTGGG 58.918 50.000 0.00 0.00 44.25 4.61
360 368 2.748209 AACTGCCTTGTAAAGTGGGT 57.252 45.000 0.00 0.00 44.25 4.51
361 369 3.868619 AACTGCCTTGTAAAGTGGGTA 57.131 42.857 0.00 0.00 44.25 3.69
362 370 4.382386 AACTGCCTTGTAAAGTGGGTAT 57.618 40.909 0.00 0.00 44.25 2.73
363 371 5.508280 AACTGCCTTGTAAAGTGGGTATA 57.492 39.130 0.00 0.00 44.25 1.47
364 372 5.508280 ACTGCCTTGTAAAGTGGGTATAA 57.492 39.130 0.00 0.00 44.25 0.98
365 373 5.883180 ACTGCCTTGTAAAGTGGGTATAAA 58.117 37.500 0.00 0.00 44.25 1.40
366 374 6.490492 ACTGCCTTGTAAAGTGGGTATAAAT 58.510 36.000 0.00 0.00 44.25 1.40
367 375 7.635648 ACTGCCTTGTAAAGTGGGTATAAATA 58.364 34.615 0.00 0.00 44.25 1.40
368 376 7.555195 ACTGCCTTGTAAAGTGGGTATAAATAC 59.445 37.037 0.00 0.00 44.25 1.89
369 377 6.829811 TGCCTTGTAAAGTGGGTATAAATACC 59.170 38.462 10.22 10.22 46.29 2.73
371 379 7.486802 CTTGTAAAGTGGGTATAAATACCGG 57.513 40.000 12.01 0.00 45.32 5.28
372 380 7.274447 CTTGTAAAGTGGGTATAAATACCGGA 58.726 38.462 9.46 0.00 45.32 5.14
383 391 8.842358 GGTATAAATACCGGATCTTCAATCAA 57.158 34.615 9.46 0.00 42.95 2.57
391 399 6.125029 ACCGGATCTTCAATCAATGAGAAAT 58.875 36.000 9.46 0.00 39.77 2.17
417 425 1.414181 TCGATCATTTGCTCTCCCTCC 59.586 52.381 0.00 0.00 0.00 4.30
421 429 1.211456 CATTTGCTCTCCCTCCCTCT 58.789 55.000 0.00 0.00 0.00 3.69
426 434 2.915869 TGCTCTCCCTCCCTCTTTTTA 58.084 47.619 0.00 0.00 0.00 1.52
427 435 2.572104 TGCTCTCCCTCCCTCTTTTTAC 59.428 50.000 0.00 0.00 0.00 2.01
428 436 2.841266 GCTCTCCCTCCCTCTTTTTACT 59.159 50.000 0.00 0.00 0.00 2.24
540 839 1.301637 CCACACACCATCGCTGTCA 60.302 57.895 0.00 0.00 0.00 3.58
620 933 1.531128 CCCCTACCCTACTCGGAGC 60.531 68.421 4.58 0.00 33.16 4.70
661 984 4.961511 GCCACCGTCAGCGACACA 62.962 66.667 8.91 0.00 41.33 3.72
676 999 3.941188 ACACCCAGCTCCACGTGG 61.941 66.667 29.26 29.26 0.00 4.94
701 1024 4.047125 CCGTGGCACCCCAATCCT 62.047 66.667 12.86 0.00 44.33 3.24
735 1070 2.561478 TTTCCCCTCTCCAGAAAACG 57.439 50.000 0.00 0.00 0.00 3.60
738 1073 2.266279 TCCCCTCTCCAGAAAACGAAT 58.734 47.619 0.00 0.00 0.00 3.34
741 1076 2.290323 CCCTCTCCAGAAAACGAATGGT 60.290 50.000 0.00 0.00 35.51 3.55
742 1077 3.412386 CCTCTCCAGAAAACGAATGGTT 58.588 45.455 0.00 0.00 41.76 3.67
776 1111 5.383984 AAACGAATGGAAAAGAAAAACGC 57.616 34.783 0.00 0.00 0.00 4.84
777 1112 4.301637 ACGAATGGAAAAGAAAAACGCT 57.698 36.364 0.00 0.00 0.00 5.07
778 1113 5.427036 ACGAATGGAAAAGAAAAACGCTA 57.573 34.783 0.00 0.00 0.00 4.26
779 1114 5.209977 ACGAATGGAAAAGAAAAACGCTAC 58.790 37.500 0.00 0.00 0.00 3.58
828 1163 1.592223 CGGGGAGGATCTTATCGGC 59.408 63.158 0.00 0.00 33.73 5.54
896 1231 3.660111 GTTGGCCCACGCACAGTC 61.660 66.667 0.00 0.00 36.38 3.51
897 1232 4.182433 TTGGCCCACGCACAGTCA 62.182 61.111 0.00 0.00 36.38 3.41
898 1233 4.927782 TGGCCCACGCACAGTCAC 62.928 66.667 0.00 0.00 36.38 3.67
930 1265 1.001641 GACTGGGTGAGCAGGCATT 60.002 57.895 0.00 0.00 0.00 3.56
1039 1674 3.679935 TCCACACAGGAGAGGAGAG 57.320 57.895 0.00 0.00 43.07 3.20
1424 2095 2.128853 TTTTGCTTCGCTTGCTCGGG 62.129 55.000 0.00 0.00 0.00 5.14
1429 2100 3.825160 TTCGCTTGCTCGGGTTGCT 62.825 57.895 0.00 0.00 0.00 3.91
1430 2101 3.793144 CGCTTGCTCGGGTTGCTC 61.793 66.667 0.00 0.00 0.00 4.26
1441 2112 1.289380 GGTTGCTCGAGGTTCGTCT 59.711 57.895 15.58 0.00 41.35 4.18
1442 2113 0.733223 GGTTGCTCGAGGTTCGTCTC 60.733 60.000 15.58 0.00 41.35 3.36
1445 2116 1.306642 TGCTCGAGGTTCGTCTCCTC 61.307 60.000 15.58 11.24 45.56 3.71
1455 2130 2.697761 CGTCTCCTCCTTCCGCGAA 61.698 63.158 8.23 0.00 0.00 4.70
1460 2135 2.345991 CTCCTTCCGCGAACCCAA 59.654 61.111 8.23 0.00 0.00 4.12
1486 2161 1.749635 CGTCTGTTCCTCTCGGGGATA 60.750 57.143 0.00 0.00 35.07 2.59
1548 2223 1.338389 TGTGGTTTTAGAGTAGCGGCC 60.338 52.381 0.00 0.00 0.00 6.13
1688 2372 2.799540 GCGTGGCTTCGATCGGAAC 61.800 63.158 16.41 0.68 0.00 3.62
1711 2395 4.314440 TGTCTGGTGACGCCTGGC 62.314 66.667 9.11 9.11 45.70 4.85
1712 2396 4.008933 GTCTGGTGACGCCTGGCT 62.009 66.667 17.92 3.54 37.75 4.75
1713 2397 4.007644 TCTGGTGACGCCTGGCTG 62.008 66.667 17.92 12.68 38.35 4.85
1803 2487 3.127548 CACTATCCATGTCTTGTTGGTGC 59.872 47.826 0.00 0.00 34.48 5.01
1805 2489 1.608055 TCCATGTCTTGTTGGTGCTG 58.392 50.000 0.00 0.00 34.48 4.41
1914 2601 2.360475 GCCTTGTCTGCAGGGGAC 60.360 66.667 15.13 5.69 41.64 4.46
2023 2710 6.283694 TCTGAGCTAGAATGCGAAATTATGT 58.716 36.000 0.00 0.00 38.13 2.29
2113 2800 6.597672 GTGATATGTCATTTCTGTGGGTGTTA 59.402 38.462 0.00 0.00 36.60 2.41
2114 2801 6.823182 TGATATGTCATTTCTGTGGGTGTTAG 59.177 38.462 5.10 0.00 0.00 2.34
2138 2825 7.753309 GAGATCAGCTCTATTAGAGTAACCA 57.247 40.000 19.40 3.42 44.12 3.67
2139 2826 7.759489 AGATCAGCTCTATTAGAGTAACCAG 57.241 40.000 19.40 3.24 44.12 4.00
2263 2951 9.790344 CATGATTCCCTGTTCTTTCTTATATCT 57.210 33.333 0.00 0.00 0.00 1.98
2321 3009 3.828875 AACAACAGCTAGAGGATAGCC 57.171 47.619 3.35 0.00 41.25 3.93
2334 3022 2.909662 AGGATAGCCCAGATTAAGCTCC 59.090 50.000 0.00 0.00 38.06 4.70
2385 3073 0.445436 GTTGTGCATCAAGAGCGGAG 59.555 55.000 0.00 0.00 36.66 4.63
2478 3166 1.895131 GATTTGTGGGCCACTGTCAAT 59.105 47.619 34.69 25.13 35.11 2.57
2480 3168 1.786937 TTGTGGGCCACTGTCAATTT 58.213 45.000 34.69 0.00 35.11 1.82
2482 3170 2.114616 TGTGGGCCACTGTCAATTTTT 58.885 42.857 34.69 0.00 35.11 1.94
2704 3393 0.372679 CATGTGCGAGTCATCAGTGC 59.627 55.000 0.00 0.00 0.00 4.40
2712 3401 0.320771 AGTCATCAGTGCGTGTTCCC 60.321 55.000 0.00 0.00 0.00 3.97
2735 3424 6.093495 CCCGAATTAGCTGATGTTTTACTTGA 59.907 38.462 0.00 0.00 0.00 3.02
2752 3441 9.929722 TTTTACTTGAACATGCTTATAATAGCG 57.070 29.630 0.00 0.00 44.18 4.26
2851 3542 5.306937 TCTCCCATTTGTGTCTTCAGTTCTA 59.693 40.000 0.00 0.00 0.00 2.10
2922 3613 6.425721 TGCTGTAAACCTGTAATGTTGTCTAC 59.574 38.462 0.00 0.00 0.00 2.59
2960 3653 1.888512 TGCAAAAATGACAGCCTCCTC 59.111 47.619 0.00 0.00 0.00 3.71
3028 3721 5.362263 GTGGTACCTCTGTTTTGTCAAGTA 58.638 41.667 14.36 0.00 0.00 2.24
3198 3891 3.006967 ACACATCCACTCCTGACACTTAC 59.993 47.826 0.00 0.00 0.00 2.34
3272 3965 3.190439 ACCCAGGTAAAGCTCTTATGGT 58.810 45.455 0.00 0.00 0.00 3.55
3281 3974 4.917906 AAGCTCTTATGGTCTTTGAGGT 57.082 40.909 0.00 0.00 37.12 3.85
3283 3976 6.374417 AAGCTCTTATGGTCTTTGAGGTTA 57.626 37.500 0.00 0.00 41.62 2.85
3460 4156 3.126453 AGGTGCCCCTGAAGATAAGATT 58.874 45.455 0.00 0.00 40.58 2.40
3546 4242 4.638865 ACTGTCTTTACTTGGTTGGTTGTC 59.361 41.667 0.00 0.00 0.00 3.18
3615 4311 8.364142 TGATTTCTTGTTAACAGGGTAAATTGG 58.636 33.333 16.76 0.00 0.00 3.16
3936 4633 0.534877 TTCTGGTTGCTGATGCGTGT 60.535 50.000 0.00 0.00 43.34 4.49
3975 4672 1.108776 ACTGATGCACCAATGGATGC 58.891 50.000 6.16 12.82 36.94 3.91
4006 4703 6.649155 TCTAAGCTATATGTTTTGCTGGACA 58.351 36.000 0.00 0.00 35.79 4.02
4019 4717 7.440856 TGTTTTGCTGGACAATAAAATTCCTTC 59.559 33.333 0.00 0.00 38.31 3.46
4040 4739 9.635404 TCCTTCTAATAACCTTTCTTTTTGTCA 57.365 29.630 0.00 0.00 0.00 3.58
4135 4834 0.824109 TCGAATGGATGGAGCGAAGT 59.176 50.000 0.00 0.00 0.00 3.01
4195 4894 9.262358 GTAAAACCCATATAGCTCACTAAAGAG 57.738 37.037 0.00 0.00 38.68 2.85
4227 4926 3.989705 CGCATGTCGATGTGTTTTCTA 57.010 42.857 3.85 0.00 41.67 2.10
4236 4935 4.986034 TCGATGTGTTTTCTATTGTCGTGT 59.014 37.500 0.00 0.00 0.00 4.49
4342 5042 8.950210 TCCATTCTGAAAAAGCTTAGATACAAG 58.050 33.333 0.00 0.00 0.00 3.16
4357 5057 5.682659 AGATACAAGCTTTCTGATGATGCT 58.317 37.500 0.00 0.00 35.16 3.79
4385 5085 9.658799 ATCAATATGAATATAAGAGGACAACCG 57.341 33.333 0.00 0.00 41.83 4.44
4396 5096 2.434702 GAGGACAACCGGTGGATATCTT 59.565 50.000 18.24 0.00 41.83 2.40
4465 5165 6.773976 TCAAGTCCCCAATTTGTGATAATC 57.226 37.500 0.00 0.00 0.00 1.75
4488 5188 6.815089 TCCTGTTTTTGCACAAATTATCTGT 58.185 32.000 0.64 0.00 0.00 3.41
4492 5192 9.848172 CTGTTTTTGCACAAATTATCTGTAAAC 57.152 29.630 0.64 0.00 0.00 2.01
4764 5469 8.437742 GGAAATAATGAAAAACACAAGCATCAG 58.562 33.333 0.00 0.00 0.00 2.90
4914 5619 7.009174 CGAAACTCTGAATCTAGCTCTCTTTTC 59.991 40.741 0.00 0.00 0.00 2.29
4915 5620 6.220726 ACTCTGAATCTAGCTCTCTTTTCC 57.779 41.667 0.00 0.00 0.00 3.13
4916 5621 5.957774 ACTCTGAATCTAGCTCTCTTTTCCT 59.042 40.000 0.00 0.00 0.00 3.36
4943 5648 1.202348 GCTTTCTGGATTTTGGGTCGG 59.798 52.381 0.00 0.00 0.00 4.79
5097 5803 0.036388 TTTGGTGATCCGAGCTGTCC 60.036 55.000 0.00 0.00 36.30 4.02
5140 5868 9.528018 GTTTCTTGTTGAGTAATCCATTTTTCA 57.472 29.630 0.00 0.00 0.00 2.69
5142 5870 7.370383 TCTTGTTGAGTAATCCATTTTTCAGC 58.630 34.615 0.00 0.00 0.00 4.26
5375 6120 1.302285 CTGCTCTCTTGGGCCACAT 59.698 57.895 5.23 0.00 0.00 3.21
5433 6178 4.142491 CCAAGCACATTTACTCGGCAATTA 60.142 41.667 0.00 0.00 0.00 1.40
5549 6297 7.896274 CGTAAGACAGTGGTTTTTACGATAATG 59.104 37.037 17.93 0.00 44.57 1.90
5551 6299 7.360575 AGACAGTGGTTTTTACGATAATGTC 57.639 36.000 0.00 0.00 34.89 3.06
5552 6300 6.932400 AGACAGTGGTTTTTACGATAATGTCA 59.068 34.615 0.00 0.00 36.63 3.58
5554 6302 8.780846 ACAGTGGTTTTTACGATAATGTCATA 57.219 30.769 0.00 0.00 0.00 2.15
5587 6388 7.671495 ATGAATACTTTTTGGAAATTGTGGC 57.329 32.000 0.00 0.00 0.00 5.01
5606 6407 4.035675 GTGGCGATAGAAAAGGAATTGGAG 59.964 45.833 0.00 0.00 39.76 3.86
5617 6418 5.813513 AAGGAATTGGAGTTGCATTTTCT 57.186 34.783 0.00 0.00 0.00 2.52
5619 6420 4.834496 AGGAATTGGAGTTGCATTTTCTGA 59.166 37.500 0.00 0.00 0.00 3.27
5624 6425 9.206870 GAATTGGAGTTGCATTTTCTGAAAATA 57.793 29.630 23.64 10.33 38.97 1.40
5625 6426 9.558396 AATTGGAGTTGCATTTTCTGAAAATAA 57.442 25.926 23.64 14.90 38.97 1.40
5626 6427 8.954950 TTGGAGTTGCATTTTCTGAAAATAAA 57.045 26.923 23.64 18.45 38.97 1.40
5627 6428 8.364129 TGGAGTTGCATTTTCTGAAAATAAAC 57.636 30.769 26.63 26.63 38.97 2.01
5628 6429 8.203485 TGGAGTTGCATTTTCTGAAAATAAACT 58.797 29.630 31.27 31.27 42.95 2.66
5629 6430 9.045223 GGAGTTGCATTTTCTGAAAATAAACTT 57.955 29.630 31.28 23.30 41.76 2.66
5656 6457 9.314321 ACTTATACGTATGAAAAACTCATCTGG 57.686 33.333 18.37 0.00 44.05 3.86
5660 6486 7.360575 ACGTATGAAAAACTCATCTGGTAAC 57.639 36.000 0.00 0.00 44.05 2.50
5662 6488 8.308931 ACGTATGAAAAACTCATCTGGTAACTA 58.691 33.333 0.00 0.00 44.05 2.24
5671 6497 7.559590 ACTCATCTGGTAACTAAAATCATGC 57.440 36.000 0.00 0.00 37.61 4.06
5677 6503 5.189928 TGGTAACTAAAATCATGCGTCCAT 58.810 37.500 0.00 0.00 37.61 3.41
5684 6510 2.827800 ATCATGCGTCCATTCGATCT 57.172 45.000 0.00 0.00 0.00 2.75
5688 6514 2.378445 TGCGTCCATTCGATCTGAAA 57.622 45.000 4.52 0.00 40.71 2.69
5689 6515 2.905075 TGCGTCCATTCGATCTGAAAT 58.095 42.857 4.52 0.00 40.71 2.17
5691 6517 2.609459 GCGTCCATTCGATCTGAAATGT 59.391 45.455 4.52 0.00 40.71 2.71
5697 6523 4.377738 CCATTCGATCTGAAATGTATGGCG 60.378 45.833 4.52 0.00 40.71 5.69
5698 6524 3.452755 TCGATCTGAAATGTATGGCGT 57.547 42.857 0.00 0.00 0.00 5.68
5733 6559 2.699251 AAAACGAACAAATCCGAGCC 57.301 45.000 0.00 0.00 0.00 4.70
5734 6560 0.515564 AAACGAACAAATCCGAGCCG 59.484 50.000 0.00 0.00 0.00 5.52
5735 6561 0.601841 AACGAACAAATCCGAGCCGT 60.602 50.000 0.00 0.00 0.00 5.68
5736 6562 0.601841 ACGAACAAATCCGAGCCGTT 60.602 50.000 0.00 0.00 0.00 4.44
5737 6563 0.179225 CGAACAAATCCGAGCCGTTG 60.179 55.000 0.00 0.00 0.00 4.10
5738 6564 0.872388 GAACAAATCCGAGCCGTTGT 59.128 50.000 0.00 0.00 35.77 3.32
5739 6565 2.070783 GAACAAATCCGAGCCGTTGTA 58.929 47.619 0.00 0.00 33.18 2.41
5740 6566 2.396590 ACAAATCCGAGCCGTTGTAT 57.603 45.000 0.00 0.00 32.58 2.29
5741 6567 2.277084 ACAAATCCGAGCCGTTGTATC 58.723 47.619 0.00 0.00 32.58 2.24
5743 6569 2.675844 CAAATCCGAGCCGTTGTATCAA 59.324 45.455 0.00 0.00 0.00 2.57
5744 6570 2.684001 ATCCGAGCCGTTGTATCAAA 57.316 45.000 0.00 0.00 0.00 2.69
5745 6571 2.459060 TCCGAGCCGTTGTATCAAAA 57.541 45.000 0.00 0.00 0.00 2.44
5747 6573 3.340034 TCCGAGCCGTTGTATCAAAAAT 58.660 40.909 0.00 0.00 0.00 1.82
5749 6575 3.126171 CCGAGCCGTTGTATCAAAAATGA 59.874 43.478 0.00 0.00 0.00 2.57
5750 6576 4.378978 CCGAGCCGTTGTATCAAAAATGAA 60.379 41.667 0.00 0.00 0.00 2.57
5751 6577 5.331902 CGAGCCGTTGTATCAAAAATGAAT 58.668 37.500 0.00 0.00 0.00 2.57
5752 6578 6.457663 CCGAGCCGTTGTATCAAAAATGAATA 60.458 38.462 0.00 0.00 0.00 1.75
5753 6579 6.628856 CGAGCCGTTGTATCAAAAATGAATAG 59.371 38.462 0.00 0.00 0.00 1.73
5754 6580 7.465379 CGAGCCGTTGTATCAAAAATGAATAGA 60.465 37.037 0.00 0.00 0.00 1.98
5755 6581 8.225603 AGCCGTTGTATCAAAAATGAATAGAT 57.774 30.769 0.00 0.00 0.00 1.98
5756 6582 8.686334 AGCCGTTGTATCAAAAATGAATAGATT 58.314 29.630 0.00 0.00 0.00 2.40
5757 6583 8.958043 GCCGTTGTATCAAAAATGAATAGATTC 58.042 33.333 0.00 0.00 37.31 2.52
5800 6626 1.605712 CGGTGAGGTCGCTTTCTTCTT 60.606 52.381 0.00 0.00 0.00 2.52
5802 6628 2.548067 GGTGAGGTCGCTTTCTTCTTCA 60.548 50.000 0.00 0.00 0.00 3.02
5807 6633 2.933260 GGTCGCTTTCTTCTTCATCCTC 59.067 50.000 0.00 0.00 0.00 3.71
5813 6639 4.522114 CTTTCTTCTTCATCCTCCCCTTC 58.478 47.826 0.00 0.00 0.00 3.46
5814 6640 3.498614 TCTTCTTCATCCTCCCCTTCT 57.501 47.619 0.00 0.00 0.00 2.85
5815 6641 3.379452 TCTTCTTCATCCTCCCCTTCTC 58.621 50.000 0.00 0.00 0.00 2.87
5816 6642 3.013417 TCTTCTTCATCCTCCCCTTCTCT 59.987 47.826 0.00 0.00 0.00 3.10
5818 6644 3.379452 TCTTCATCCTCCCCTTCTCTTC 58.621 50.000 0.00 0.00 0.00 2.87
5819 6645 2.182516 TCATCCTCCCCTTCTCTTCC 57.817 55.000 0.00 0.00 0.00 3.46
5820 6646 1.653918 TCATCCTCCCCTTCTCTTCCT 59.346 52.381 0.00 0.00 0.00 3.36
5821 6647 2.046292 CATCCTCCCCTTCTCTTCCTC 58.954 57.143 0.00 0.00 0.00 3.71
5822 6648 1.398799 TCCTCCCCTTCTCTTCCTCT 58.601 55.000 0.00 0.00 0.00 3.69
5823 6649 1.007721 TCCTCCCCTTCTCTTCCTCTG 59.992 57.143 0.00 0.00 0.00 3.35
5824 6650 1.494960 CTCCCCTTCTCTTCCTCTGG 58.505 60.000 0.00 0.00 0.00 3.86
5825 6651 0.618968 TCCCCTTCTCTTCCTCTGGC 60.619 60.000 0.00 0.00 0.00 4.85
5826 6652 1.631071 CCCCTTCTCTTCCTCTGGCC 61.631 65.000 0.00 0.00 0.00 5.36
5827 6653 0.620121 CCCTTCTCTTCCTCTGGCCT 60.620 60.000 3.32 0.00 0.00 5.19
5828 6654 0.540923 CCTTCTCTTCCTCTGGCCTG 59.459 60.000 3.32 2.92 0.00 4.85
5829 6655 1.566211 CTTCTCTTCCTCTGGCCTGA 58.434 55.000 12.29 12.29 0.00 3.86
5830 6656 2.117865 CTTCTCTTCCTCTGGCCTGAT 58.882 52.381 13.33 0.00 0.00 2.90
5831 6657 2.260639 TCTCTTCCTCTGGCCTGATT 57.739 50.000 13.33 0.00 0.00 2.57
5832 6658 1.836166 TCTCTTCCTCTGGCCTGATTG 59.164 52.381 13.33 7.78 0.00 2.67
5833 6659 0.254178 TCTTCCTCTGGCCTGATTGC 59.746 55.000 13.33 0.00 0.00 3.56
5834 6660 0.034767 CTTCCTCTGGCCTGATTGCA 60.035 55.000 13.33 0.00 0.00 4.08
5835 6661 0.034767 TTCCTCTGGCCTGATTGCAG 60.035 55.000 13.33 0.78 41.93 4.41
5850 6676 3.312709 GCAGGTAGCGCATTGTTTC 57.687 52.632 11.47 0.00 0.00 2.78
5851 6677 0.804989 GCAGGTAGCGCATTGTTTCT 59.195 50.000 11.47 0.00 0.00 2.52
5852 6678 1.202076 GCAGGTAGCGCATTGTTTCTC 60.202 52.381 11.47 0.00 0.00 2.87
5853 6679 2.350522 CAGGTAGCGCATTGTTTCTCT 58.649 47.619 11.47 0.00 0.00 3.10
5854 6680 2.349886 CAGGTAGCGCATTGTTTCTCTC 59.650 50.000 11.47 0.00 0.00 3.20
5855 6681 2.028112 AGGTAGCGCATTGTTTCTCTCA 60.028 45.455 11.47 0.00 0.00 3.27
5856 6682 2.094417 GGTAGCGCATTGTTTCTCTCAC 59.906 50.000 11.47 0.00 0.00 3.51
5857 6683 2.175878 AGCGCATTGTTTCTCTCACT 57.824 45.000 11.47 0.00 0.00 3.41
5858 6684 2.072298 AGCGCATTGTTTCTCTCACTC 58.928 47.619 11.47 0.00 0.00 3.51
5859 6685 1.129437 GCGCATTGTTTCTCTCACTCC 59.871 52.381 0.30 0.00 0.00 3.85
5860 6686 1.734465 CGCATTGTTTCTCTCACTCCC 59.266 52.381 0.00 0.00 0.00 4.30
5861 6687 2.613977 CGCATTGTTTCTCTCACTCCCT 60.614 50.000 0.00 0.00 0.00 4.20
5862 6688 3.006247 GCATTGTTTCTCTCACTCCCTC 58.994 50.000 0.00 0.00 0.00 4.30
5863 6689 3.557898 GCATTGTTTCTCTCACTCCCTCA 60.558 47.826 0.00 0.00 0.00 3.86
5864 6690 4.645535 CATTGTTTCTCTCACTCCCTCAA 58.354 43.478 0.00 0.00 0.00 3.02
5865 6691 3.753294 TGTTTCTCTCACTCCCTCAAC 57.247 47.619 0.00 0.00 0.00 3.18
5866 6692 3.309296 TGTTTCTCTCACTCCCTCAACT 58.691 45.455 0.00 0.00 0.00 3.16
5867 6693 4.480115 TGTTTCTCTCACTCCCTCAACTA 58.520 43.478 0.00 0.00 0.00 2.24
5868 6694 4.899457 TGTTTCTCTCACTCCCTCAACTAA 59.101 41.667 0.00 0.00 0.00 2.24
5869 6695 5.011125 TGTTTCTCTCACTCCCTCAACTAAG 59.989 44.000 0.00 0.00 0.00 2.18
5870 6696 4.390129 TCTCTCACTCCCTCAACTAAGT 57.610 45.455 0.00 0.00 0.00 2.24
5871 6697 4.082845 TCTCTCACTCCCTCAACTAAGTG 58.917 47.826 0.00 0.00 40.34 3.16
5872 6698 4.082845 CTCTCACTCCCTCAACTAAGTGA 58.917 47.826 4.22 4.22 44.26 3.41
5873 6699 4.480115 TCTCACTCCCTCAACTAAGTGAA 58.520 43.478 5.66 0.00 45.34 3.18
5874 6700 4.899457 TCTCACTCCCTCAACTAAGTGAAA 59.101 41.667 5.66 0.00 45.34 2.69
5875 6701 5.365605 TCTCACTCCCTCAACTAAGTGAAAA 59.634 40.000 5.66 0.00 45.34 2.29
5876 6702 6.043243 TCTCACTCCCTCAACTAAGTGAAAAT 59.957 38.462 5.66 0.00 45.34 1.82
5877 6703 5.997746 TCACTCCCTCAACTAAGTGAAAATG 59.002 40.000 1.79 0.00 43.69 2.32
5878 6704 5.182001 CACTCCCTCAACTAAGTGAAAATGG 59.818 44.000 0.00 0.00 41.26 3.16
5879 6705 4.079253 TCCCTCAACTAAGTGAAAATGGC 58.921 43.478 0.00 0.00 0.00 4.40
5880 6706 4.082125 CCCTCAACTAAGTGAAAATGGCT 58.918 43.478 0.00 0.00 0.00 4.75
5881 6707 4.156739 CCCTCAACTAAGTGAAAATGGCTC 59.843 45.833 0.00 0.00 0.00 4.70
5882 6708 4.156739 CCTCAACTAAGTGAAAATGGCTCC 59.843 45.833 0.00 0.00 0.00 4.70
5883 6709 4.985538 TCAACTAAGTGAAAATGGCTCCT 58.014 39.130 0.00 0.00 0.00 3.69
5884 6710 5.003804 TCAACTAAGTGAAAATGGCTCCTC 58.996 41.667 0.00 0.00 0.00 3.71
5885 6711 4.640771 ACTAAGTGAAAATGGCTCCTCA 57.359 40.909 0.00 0.00 0.00 3.86
5886 6712 4.327680 ACTAAGTGAAAATGGCTCCTCAC 58.672 43.478 0.00 0.00 38.77 3.51
5887 6713 2.206576 AGTGAAAATGGCTCCTCACC 57.793 50.000 0.00 0.00 39.19 4.02
5888 6714 1.425066 AGTGAAAATGGCTCCTCACCA 59.575 47.619 0.00 0.00 39.19 4.17
5889 6715 2.158475 AGTGAAAATGGCTCCTCACCAA 60.158 45.455 0.00 0.00 41.49 3.67
5890 6716 2.029918 GTGAAAATGGCTCCTCACCAAC 60.030 50.000 0.00 0.00 41.49 3.77
5891 6717 2.238521 GAAAATGGCTCCTCACCAACA 58.761 47.619 0.00 0.00 41.49 3.33
5892 6718 1.620822 AAATGGCTCCTCACCAACAC 58.379 50.000 0.00 0.00 41.49 3.32
5893 6719 0.773644 AATGGCTCCTCACCAACACT 59.226 50.000 0.00 0.00 41.49 3.55
5894 6720 0.037303 ATGGCTCCTCACCAACACTG 59.963 55.000 0.00 0.00 41.49 3.66
5904 6730 3.021451 CCAACACTGGTCAACCCTC 57.979 57.895 0.00 0.00 38.00 4.30
5905 6731 0.884704 CCAACACTGGTCAACCCTCG 60.885 60.000 0.00 0.00 38.00 4.63
5906 6732 1.227853 AACACTGGTCAACCCTCGC 60.228 57.895 0.00 0.00 34.29 5.03
5907 6733 2.358737 CACTGGTCAACCCTCGCC 60.359 66.667 0.00 0.00 34.29 5.54
5908 6734 3.637273 ACTGGTCAACCCTCGCCC 61.637 66.667 0.00 0.00 34.29 6.13
5909 6735 3.322466 CTGGTCAACCCTCGCCCT 61.322 66.667 0.00 0.00 34.29 5.19
5910 6736 3.316573 CTGGTCAACCCTCGCCCTC 62.317 68.421 0.00 0.00 34.29 4.30
5911 6737 4.452733 GGTCAACCCTCGCCCTCG 62.453 72.222 0.00 0.00 0.00 4.63
5925 6751 3.741476 CTCGCCCTTGCCAGCAAC 61.741 66.667 0.00 0.00 0.00 4.17
5928 6754 4.043200 GCCCTTGCCAGCAACGTC 62.043 66.667 0.00 0.00 0.00 4.34
5929 6755 3.726517 CCCTTGCCAGCAACGTCG 61.727 66.667 0.00 0.00 0.00 5.12
5930 6756 2.972505 CCTTGCCAGCAACGTCGT 60.973 61.111 0.00 0.00 0.00 4.34
5931 6757 2.249309 CTTGCCAGCAACGTCGTG 59.751 61.111 0.00 0.00 0.00 4.35
5932 6758 3.240606 CTTGCCAGCAACGTCGTGG 62.241 63.158 0.00 0.00 0.00 4.94
5933 6759 4.539083 TGCCAGCAACGTCGTGGT 62.539 61.111 0.00 0.00 33.51 4.16
5934 6760 3.712881 GCCAGCAACGTCGTGGTC 61.713 66.667 0.00 0.00 33.51 4.02
5935 6761 2.279851 CCAGCAACGTCGTGGTCA 60.280 61.111 0.00 0.00 0.00 4.02
5936 6762 2.310233 CCAGCAACGTCGTGGTCAG 61.310 63.158 0.00 0.00 0.00 3.51
5937 6763 2.029073 AGCAACGTCGTGGTCAGG 59.971 61.111 0.00 0.00 0.00 3.86
5938 6764 3.712881 GCAACGTCGTGGTCAGGC 61.713 66.667 0.00 0.00 0.00 4.85
5939 6765 2.279851 CAACGTCGTGGTCAGGCA 60.280 61.111 0.00 0.00 0.00 4.75
5940 6766 2.279918 AACGTCGTGGTCAGGCAC 60.280 61.111 0.00 0.00 0.00 5.01
5941 6767 4.640855 ACGTCGTGGTCAGGCACG 62.641 66.667 0.00 0.00 45.09 5.34
5947 6773 3.617735 TGGTCAGGCACGCCGTTA 61.618 61.111 1.61 0.00 41.95 3.18
5948 6774 3.116531 GGTCAGGCACGCCGTTAC 61.117 66.667 1.61 2.39 41.95 2.50
5949 6775 2.048503 GTCAGGCACGCCGTTACT 60.049 61.111 1.61 0.00 41.95 2.24
5950 6776 2.048597 TCAGGCACGCCGTTACTG 60.049 61.111 10.70 10.70 41.95 2.74
5951 6777 2.357034 CAGGCACGCCGTTACTGT 60.357 61.111 9.16 0.00 41.95 3.55
5952 6778 2.048503 AGGCACGCCGTTACTGTC 60.049 61.111 1.61 0.00 41.95 3.51
5953 6779 2.048503 GGCACGCCGTTACTGTCT 60.049 61.111 0.00 0.00 0.00 3.41
5954 6780 1.666872 GGCACGCCGTTACTGTCTT 60.667 57.895 0.00 0.00 0.00 3.01
5955 6781 1.623973 GGCACGCCGTTACTGTCTTC 61.624 60.000 0.00 0.00 0.00 2.87
5956 6782 1.941476 GCACGCCGTTACTGTCTTCG 61.941 60.000 0.00 0.00 0.00 3.79
5957 6783 1.080974 ACGCCGTTACTGTCTTCGG 60.081 57.895 11.81 11.81 44.86 4.30
5958 6784 1.804326 CGCCGTTACTGTCTTCGGG 60.804 63.158 15.84 6.43 42.71 5.14
5959 6785 1.447314 GCCGTTACTGTCTTCGGGG 60.447 63.158 15.84 0.05 42.71 5.73
5960 6786 1.969862 CCGTTACTGTCTTCGGGGT 59.030 57.895 9.33 0.00 39.41 4.95
5961 6787 0.389426 CCGTTACTGTCTTCGGGGTG 60.389 60.000 9.33 0.00 39.41 4.61
5962 6788 0.389426 CGTTACTGTCTTCGGGGTGG 60.389 60.000 0.00 0.00 0.00 4.61
5963 6789 0.683412 GTTACTGTCTTCGGGGTGGT 59.317 55.000 0.00 0.00 0.00 4.16
5964 6790 0.971386 TTACTGTCTTCGGGGTGGTC 59.029 55.000 0.00 0.00 0.00 4.02
5965 6791 0.901580 TACTGTCTTCGGGGTGGTCC 60.902 60.000 0.00 0.00 0.00 4.46
5966 6792 1.913762 CTGTCTTCGGGGTGGTCCT 60.914 63.158 0.00 0.00 35.33 3.85
5967 6793 2.172483 CTGTCTTCGGGGTGGTCCTG 62.172 65.000 0.00 0.00 43.43 3.86
5968 6794 2.606519 TCTTCGGGGTGGTCCTGG 60.607 66.667 0.00 0.00 42.31 4.45
5969 6795 4.410400 CTTCGGGGTGGTCCTGGC 62.410 72.222 0.00 0.00 42.31 4.85
5970 6796 4.974438 TTCGGGGTGGTCCTGGCT 62.974 66.667 0.00 0.00 42.31 4.75
5974 6800 4.083862 GGGTGGTCCTGGCTCGAC 62.084 72.222 0.00 0.00 0.00 4.20
5978 6804 2.043248 GGTCCTGGCTCGACCCTA 60.043 66.667 11.23 0.00 43.48 3.53
5979 6805 2.128507 GGTCCTGGCTCGACCCTAG 61.129 68.421 11.23 0.00 43.48 3.02
5980 6806 2.128507 GTCCTGGCTCGACCCTAGG 61.129 68.421 0.06 0.06 37.83 3.02
5981 6807 2.840102 CCTGGCTCGACCCTAGGG 60.840 72.222 27.36 27.36 37.83 3.53
5993 6819 4.408821 CTAGGGTGCTGCGGCCAA 62.409 66.667 16.57 0.00 37.74 4.52
5994 6820 4.408821 TAGGGTGCTGCGGCCAAG 62.409 66.667 16.57 0.00 37.74 3.61
6023 6849 3.721706 CCCCCTTCCGCTGAGCTT 61.722 66.667 1.78 0.00 0.00 3.74
6024 6850 2.124942 CCCCTTCCGCTGAGCTTC 60.125 66.667 1.78 0.00 0.00 3.86
6025 6851 2.665000 CCCTTCCGCTGAGCTTCA 59.335 61.111 1.78 0.00 0.00 3.02
6026 6852 1.743252 CCCTTCCGCTGAGCTTCAC 60.743 63.158 1.78 0.00 0.00 3.18
6027 6853 1.004560 CCTTCCGCTGAGCTTCACA 60.005 57.895 1.78 0.00 0.00 3.58
6028 6854 1.018226 CCTTCCGCTGAGCTTCACAG 61.018 60.000 1.78 0.00 38.27 3.66
6029 6855 1.004560 TTCCGCTGAGCTTCACAGG 60.005 57.895 1.78 0.00 36.09 4.00
6030 6856 3.123620 CCGCTGAGCTTCACAGGC 61.124 66.667 1.78 0.00 36.09 4.85
6031 6857 2.357881 CGCTGAGCTTCACAGGCA 60.358 61.111 1.78 0.00 36.09 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 242 4.095483 CCCAACTCTAAGCTGCTAACATTG 59.905 45.833 0.90 4.73 0.00 2.82
298 306 5.938125 ACTACAACCGACTTAAGCATTGATT 59.062 36.000 1.29 0.00 0.00 2.57
322 330 5.813672 GCAGTTAGGATTACAATGTCGGTAA 59.186 40.000 0.00 0.00 35.40 2.85
344 352 6.829811 GGTATTTATACCCACTTTACAAGGCA 59.170 38.462 7.56 0.00 45.62 4.75
361 369 9.224267 CTCATTGATTGAAGATCCGGTATTTAT 57.776 33.333 0.00 0.00 32.78 1.40
362 370 8.428852 TCTCATTGATTGAAGATCCGGTATTTA 58.571 33.333 0.00 0.00 32.78 1.40
363 371 7.282585 TCTCATTGATTGAAGATCCGGTATTT 58.717 34.615 0.00 0.00 32.78 1.40
364 372 6.830912 TCTCATTGATTGAAGATCCGGTATT 58.169 36.000 0.00 0.00 32.78 1.89
365 373 6.425210 TCTCATTGATTGAAGATCCGGTAT 57.575 37.500 0.00 0.00 32.78 2.73
366 374 5.869649 TCTCATTGATTGAAGATCCGGTA 57.130 39.130 0.00 0.00 32.78 4.02
367 375 4.760530 TCTCATTGATTGAAGATCCGGT 57.239 40.909 0.00 0.00 32.78 5.28
368 376 6.630444 ATTTCTCATTGATTGAAGATCCGG 57.370 37.500 0.00 0.00 32.78 5.14
369 377 8.281194 CAGTATTTCTCATTGATTGAAGATCCG 58.719 37.037 0.00 0.00 32.78 4.18
370 378 9.118300 ACAGTATTTCTCATTGATTGAAGATCC 57.882 33.333 0.00 0.00 32.78 3.36
383 391 7.281774 AGCAAATGATCGAACAGTATTTCTCAT 59.718 33.333 0.82 0.00 0.00 2.90
391 399 4.433615 GGAGAGCAAATGATCGAACAGTA 58.566 43.478 0.82 0.00 35.26 2.74
417 425 9.586435 AGACATTTTTGTGAAAGTAAAAAGAGG 57.414 29.630 0.00 0.00 38.64 3.69
421 429 8.165428 CGCAAGACATTTTTGTGAAAGTAAAAA 58.835 29.630 0.00 0.00 38.07 1.94
426 434 4.111916 CCGCAAGACATTTTTGTGAAAGT 58.888 39.130 0.52 0.00 38.07 2.66
427 435 4.358851 TCCGCAAGACATTTTTGTGAAAG 58.641 39.130 0.52 0.00 38.07 2.62
428 436 4.377839 TCCGCAAGACATTTTTGTGAAA 57.622 36.364 0.52 0.00 38.07 2.69
540 839 1.213094 CGTCGACGTGGCTTTGACTT 61.213 55.000 29.08 0.00 34.11 3.01
644 967 4.961511 TGTGTCGCTGACGGTGGC 62.962 66.667 0.00 0.00 40.63 5.01
754 1089 5.106442 AGCGTTTTTCTTTTCCATTCGTTT 58.894 33.333 0.00 0.00 0.00 3.60
755 1090 4.678622 AGCGTTTTTCTTTTCCATTCGTT 58.321 34.783 0.00 0.00 0.00 3.85
756 1091 4.301637 AGCGTTTTTCTTTTCCATTCGT 57.698 36.364 0.00 0.00 0.00 3.85
757 1092 4.615541 GGTAGCGTTTTTCTTTTCCATTCG 59.384 41.667 0.00 0.00 0.00 3.34
759 1094 4.542735 CGGTAGCGTTTTTCTTTTCCATT 58.457 39.130 6.07 0.00 0.00 3.16
760 1095 3.610821 GCGGTAGCGTTTTTCTTTTCCAT 60.611 43.478 16.63 0.00 0.00 3.41
761 1096 2.287129 GCGGTAGCGTTTTTCTTTTCCA 60.287 45.455 16.63 0.00 0.00 3.53
762 1097 2.313234 GCGGTAGCGTTTTTCTTTTCC 58.687 47.619 16.63 0.00 0.00 3.13
775 1110 2.791396 TTCTGACGTCACGCGGTAGC 62.791 60.000 15.76 0.00 46.52 3.58
776 1111 0.386352 TTTCTGACGTCACGCGGTAG 60.386 55.000 15.76 2.99 46.52 3.18
777 1112 0.386352 CTTTCTGACGTCACGCGGTA 60.386 55.000 15.76 0.00 46.52 4.02
778 1113 1.660575 CTTTCTGACGTCACGCGGT 60.661 57.895 15.76 0.00 46.52 5.68
779 1114 3.000080 GCTTTCTGACGTCACGCGG 62.000 63.158 15.76 5.04 46.52 6.46
828 1163 2.202623 GACGGGTGCTAGCTGACG 60.203 66.667 17.23 18.24 0.00 4.35
880 1215 4.182433 TGACTGTGCGTGGGCCAA 62.182 61.111 8.40 0.00 38.85 4.52
881 1216 4.927782 GTGACTGTGCGTGGGCCA 62.928 66.667 0.00 0.00 38.85 5.36
896 1231 0.974383 AGTCAAACCTACTCCCCGTG 59.026 55.000 0.00 0.00 0.00 4.94
897 1232 0.974383 CAGTCAAACCTACTCCCCGT 59.026 55.000 0.00 0.00 0.00 5.28
898 1233 0.249398 CCAGTCAAACCTACTCCCCG 59.751 60.000 0.00 0.00 0.00 5.73
899 1234 0.618981 CCCAGTCAAACCTACTCCCC 59.381 60.000 0.00 0.00 0.00 4.81
930 1265 1.975407 GACGAGGACCGAGGGAACA 60.975 63.158 0.00 0.00 41.76 3.18
1037 1672 0.033601 TCTCCTGTGCTCCTCTCCTC 60.034 60.000 0.00 0.00 0.00 3.71
1038 1673 0.033208 CTCTCCTGTGCTCCTCTCCT 60.033 60.000 0.00 0.00 0.00 3.69
1039 1674 1.675720 GCTCTCCTGTGCTCCTCTCC 61.676 65.000 0.00 0.00 0.00 3.71
1329 1986 1.681486 CCCGCTTCCTCCTCCTTCTC 61.681 65.000 0.00 0.00 0.00 2.87
1392 2063 3.737172 CAAAACCCGCGGCCTCAG 61.737 66.667 22.85 8.46 0.00 3.35
1396 2067 4.717629 GAAGCAAAACCCGCGGCC 62.718 66.667 22.85 2.70 0.00 6.13
1424 2095 0.733223 GGAGACGAACCTCGAGCAAC 60.733 60.000 6.99 0.00 43.74 4.17
1441 2112 3.387947 GGGTTCGCGGAAGGAGGA 61.388 66.667 6.13 0.00 0.00 3.71
1442 2113 2.741486 TTTGGGTTCGCGGAAGGAGG 62.741 60.000 6.13 0.00 0.00 4.30
1445 2116 0.730840 GTATTTGGGTTCGCGGAAGG 59.269 55.000 6.13 0.00 0.00 3.46
1455 2130 1.003928 GGAACAGACGGGTATTTGGGT 59.996 52.381 0.00 0.00 0.00 4.51
1460 2135 1.749634 CGAGAGGAACAGACGGGTATT 59.250 52.381 0.00 0.00 0.00 1.89
1522 2197 0.036306 ACTCTAAAACCACAGCCGGG 59.964 55.000 2.18 0.00 0.00 5.73
1571 2246 4.994756 CCAGCCGCAACCCCCTTT 62.995 66.667 0.00 0.00 0.00 3.11
1663 2347 1.148157 ATCGAAGCCACGCTGATTCG 61.148 55.000 16.18 16.18 39.62 3.34
1688 2372 0.737715 GGCGTCACCAGACAGCTAAG 60.738 60.000 10.47 0.00 45.23 2.18
1725 2409 4.722700 AAGTGCCGGATTGCGCCT 62.723 61.111 5.05 0.00 42.69 5.52
1819 2503 0.533951 GAGAAAAGCATGGGCAAGGG 59.466 55.000 0.00 0.00 44.61 3.95
1914 2601 0.828022 TACCTACCGATGCACCCTTG 59.172 55.000 0.00 0.00 0.00 3.61
2023 2710 4.495690 TGCTAAACCATGCACCATACTA 57.504 40.909 0.00 0.00 33.94 1.82
2052 2739 2.292267 GACCACCATGCCTTCATACTG 58.708 52.381 0.00 0.00 0.00 2.74
2114 2801 7.663905 TCTGGTTACTCTAATAGAGCTGATCTC 59.336 40.741 16.62 2.36 46.12 2.75
2136 2823 3.012518 CAGGCACCTTGTTATTCTCTGG 58.987 50.000 0.00 0.00 0.00 3.86
2138 2825 4.286032 TGTACAGGCACCTTGTTATTCTCT 59.714 41.667 0.00 0.00 0.00 3.10
2139 2826 4.575885 TGTACAGGCACCTTGTTATTCTC 58.424 43.478 0.00 0.00 0.00 2.87
2183 2871 3.221771 TGCACAAGATAAGGCAAAGTGT 58.778 40.909 0.00 0.00 32.54 3.55
2263 2951 4.764823 CCTACAAAGAAACAAGCCCATACA 59.235 41.667 0.00 0.00 0.00 2.29
2334 3022 5.068636 CCACCCATTCTATCCTTGATGAAG 58.931 45.833 0.00 0.00 0.00 3.02
2385 3073 2.973180 GAACCGGTGCTCTATCCGCC 62.973 65.000 8.52 0.00 44.63 6.13
2454 3142 1.133513 ACAGTGGCCCACAAATCAGAA 60.134 47.619 17.80 0.00 36.74 3.02
2478 3166 6.529829 CGAAAGTTGAACAGGTCATTCAAAAA 59.470 34.615 0.00 0.00 45.19 1.94
2480 3168 5.449862 CCGAAAGTTGAACAGGTCATTCAAA 60.450 40.000 0.00 0.00 45.19 2.69
2482 3170 3.563808 CCGAAAGTTGAACAGGTCATTCA 59.436 43.478 0.00 0.00 35.70 2.57
2704 3393 2.004583 TCAGCTAATTCGGGAACACG 57.995 50.000 0.00 0.00 0.00 4.49
2712 3401 8.015087 TGTTCAAGTAAAACATCAGCTAATTCG 58.985 33.333 0.00 0.00 31.90 3.34
2735 3424 4.452455 GCACTCCGCTATTATAAGCATGTT 59.548 41.667 0.00 0.00 42.91 2.71
2752 3441 3.188667 GGCAGTTAAACTTGTAGCACTCC 59.811 47.826 0.00 0.00 0.00 3.85
2851 3542 5.821470 CAGAGTCTACAATGCCAAATCATCT 59.179 40.000 0.00 0.00 0.00 2.90
2922 3613 8.572828 TTTTTGCAAAAGTGTGTACATATCAG 57.427 30.769 22.78 0.00 0.00 2.90
2960 3653 7.470900 ACAATTTGTGCAAATTACCAACAAAG 58.529 30.769 18.75 8.85 46.01 2.77
3028 3721 5.428253 ACATCAAGTGACTAATAATGCCGT 58.572 37.500 0.00 0.00 0.00 5.68
3332 4026 4.451774 TGCACATGAAAAATTAAGCTTGCC 59.548 37.500 9.86 0.00 0.00 4.52
3376 4072 6.330004 TGCTGATCATCTGTTTTGCTTTTA 57.670 33.333 0.00 0.00 0.00 1.52
3460 4156 0.620556 GGCAAACATCCTCCTCCTCA 59.379 55.000 0.00 0.00 0.00 3.86
3546 4242 4.221342 CACAAACATGTTCATCCAGTTCG 58.779 43.478 12.39 0.00 0.00 3.95
3695 4391 2.948979 AGCATTTGTTTGACCGACAGAA 59.051 40.909 0.00 0.00 0.00 3.02
3778 4475 3.470709 ACATGCAGAATTATCCGTCCAG 58.529 45.455 0.00 0.00 0.00 3.86
3783 4480 7.023575 GGCTTATAAACATGCAGAATTATCCG 58.976 38.462 0.00 0.00 0.00 4.18
3936 4633 2.771943 GTGGAGGATAATGGGAGTGTCA 59.228 50.000 0.00 0.00 0.00 3.58
4040 4739 9.863650 ATTTTCTTCATCATATTCTGGTGAGAT 57.136 29.630 0.00 0.00 45.60 2.75
4195 4894 3.545481 CATGCGTCGACGGCAGTC 61.545 66.667 36.13 20.92 43.72 3.51
4227 4926 1.555075 AGCCATACAGGACACGACAAT 59.445 47.619 0.00 0.00 41.22 2.71
4236 4935 5.365314 TGAACATACATACAGCCATACAGGA 59.635 40.000 0.00 0.00 41.22 3.86
4315 5014 8.268850 TGTATCTAAGCTTTTTCAGAATGGAC 57.731 34.615 3.20 0.31 36.16 4.02
4342 5042 4.895224 TTGATCAGCATCATCAGAAAGC 57.105 40.909 0.00 0.00 38.89 3.51
4385 5085 9.490379 ACAAATATAGTCGAAAAGATATCCACC 57.510 33.333 0.00 0.00 0.00 4.61
4396 5096 8.246908 ACAAATCGTCACAAATATAGTCGAAA 57.753 30.769 0.00 0.00 0.00 3.46
4465 5165 8.586570 TTACAGATAATTTGTGCAAAAACAGG 57.413 30.769 3.61 0.00 33.56 4.00
4488 5188 6.948886 TCAAGGCAAGGTACCATATTTGTTTA 59.051 34.615 15.94 0.00 0.00 2.01
4492 5192 4.201910 CGTCAAGGCAAGGTACCATATTTG 60.202 45.833 15.94 10.85 0.00 2.32
4533 5233 9.842775 ATCTCATCTATCAAAGTTATCTGCAAA 57.157 29.630 0.00 0.00 0.00 3.68
4914 5619 5.410439 CCAAAATCCAGAAAGCATGAAAAGG 59.590 40.000 0.00 0.00 0.00 3.11
4915 5620 5.410439 CCCAAAATCCAGAAAGCATGAAAAG 59.590 40.000 0.00 0.00 0.00 2.27
4916 5621 5.163216 ACCCAAAATCCAGAAAGCATGAAAA 60.163 36.000 0.00 0.00 0.00 2.29
5008 5713 9.793259 ATTCAGAACCAGTTCTTTTATACTTGA 57.207 29.630 10.32 0.54 46.95 3.02
5097 5803 6.980397 ACAAGAAACATAAGCTGAAAAACAGG 59.020 34.615 0.00 0.00 45.82 4.00
5135 5863 1.373590 GCCGGCGGATAAGCTGAAAA 61.374 55.000 33.44 0.00 45.94 2.29
5138 5866 3.445518 CTGCCGGCGGATAAGCTGA 62.446 63.158 32.31 1.75 45.94 4.26
5140 5868 2.044806 ATTCTGCCGGCGGATAAGCT 62.045 55.000 37.41 17.28 37.29 3.74
5142 5870 0.588252 CAATTCTGCCGGCGGATAAG 59.412 55.000 37.41 24.59 0.00 1.73
5386 6131 1.447838 CCGTGTCAATGTCCTCGGG 60.448 63.158 7.78 0.00 35.25 5.14
5531 6279 9.444600 ACTTATGACATTATCGTAAAAACCACT 57.555 29.630 0.00 0.00 38.15 4.00
5533 6281 9.661563 AGACTTATGACATTATCGTAAAAACCA 57.338 29.630 0.00 0.00 38.15 3.67
5568 6369 4.920640 TCGCCACAATTTCCAAAAAGTA 57.079 36.364 0.00 0.00 0.00 2.24
5574 6375 5.336372 CCTTTTCTATCGCCACAATTTCCAA 60.336 40.000 0.00 0.00 0.00 3.53
5576 6377 4.398044 TCCTTTTCTATCGCCACAATTTCC 59.602 41.667 0.00 0.00 0.00 3.13
5583 6384 3.945285 TCCAATTCCTTTTCTATCGCCAC 59.055 43.478 0.00 0.00 0.00 5.01
5584 6385 4.199310 CTCCAATTCCTTTTCTATCGCCA 58.801 43.478 0.00 0.00 0.00 5.69
5587 6388 5.123820 TGCAACTCCAATTCCTTTTCTATCG 59.876 40.000 0.00 0.00 0.00 2.92
5635 6436 8.308931 AGTTACCAGATGAGTTTTTCATACGTA 58.691 33.333 0.00 0.00 46.51 3.57
5647 6448 6.258727 CGCATGATTTTAGTTACCAGATGAGT 59.741 38.462 0.00 0.00 0.00 3.41
5652 6453 4.873827 GGACGCATGATTTTAGTTACCAGA 59.126 41.667 0.00 0.00 0.00 3.86
5653 6454 4.634004 TGGACGCATGATTTTAGTTACCAG 59.366 41.667 0.00 0.00 0.00 4.00
5656 6457 5.901884 CGAATGGACGCATGATTTTAGTTAC 59.098 40.000 0.00 0.00 0.00 2.50
5660 6486 4.794248 TCGAATGGACGCATGATTTTAG 57.206 40.909 0.00 0.00 0.00 1.85
5662 6488 3.879295 AGATCGAATGGACGCATGATTTT 59.121 39.130 0.00 0.00 0.00 1.82
5671 6497 5.107337 CCATACATTTCAGATCGAATGGACG 60.107 44.000 17.73 7.32 32.59 4.79
5677 6503 3.792401 ACGCCATACATTTCAGATCGAA 58.208 40.909 0.00 0.00 0.00 3.71
5684 6510 1.396648 CGCTCAACGCCATACATTTCA 59.603 47.619 0.00 0.00 34.21 2.69
5688 6514 0.392461 AACCGCTCAACGCCATACAT 60.392 50.000 0.00 0.00 41.76 2.29
5689 6515 1.004320 AACCGCTCAACGCCATACA 60.004 52.632 0.00 0.00 41.76 2.29
5691 6517 0.246910 TACAACCGCTCAACGCCATA 59.753 50.000 0.00 0.00 41.76 2.74
5713 6539 2.603652 CGGCTCGGATTTGTTCGTTTTT 60.604 45.455 0.00 0.00 0.00 1.94
5755 6581 3.733224 CGTTTTTGATTCAACGGCATGAA 59.267 39.130 0.00 5.33 41.67 2.57
5756 6582 3.003793 TCGTTTTTGATTCAACGGCATGA 59.996 39.130 8.94 0.00 44.73 3.07
5757 6583 3.304257 TCGTTTTTGATTCAACGGCATG 58.696 40.909 8.94 0.00 44.73 4.06
5758 6584 3.634568 TCGTTTTTGATTCAACGGCAT 57.365 38.095 8.94 0.00 44.73 4.40
5759 6585 3.109619 GTTCGTTTTTGATTCAACGGCA 58.890 40.909 8.94 0.00 44.73 5.69
5760 6586 2.150424 CGTTCGTTTTTGATTCAACGGC 59.850 45.455 8.94 3.43 44.73 5.68
5761 6587 3.990978 CGTTCGTTTTTGATTCAACGG 57.009 42.857 8.94 0.00 44.73 4.44
5762 6588 3.176867 CACCGTTCGTTTTTGATTCAACG 59.823 43.478 0.00 0.74 45.75 4.10
5763 6589 4.344448 TCACCGTTCGTTTTTGATTCAAC 58.656 39.130 0.00 0.00 0.00 3.18
5764 6590 4.496673 CCTCACCGTTCGTTTTTGATTCAA 60.497 41.667 0.00 0.00 0.00 2.69
5765 6591 3.002862 CCTCACCGTTCGTTTTTGATTCA 59.997 43.478 0.00 0.00 0.00 2.57
5766 6592 3.002965 ACCTCACCGTTCGTTTTTGATTC 59.997 43.478 0.00 0.00 0.00 2.52
5767 6593 2.946990 ACCTCACCGTTCGTTTTTGATT 59.053 40.909 0.00 0.00 0.00 2.57
5800 6626 1.653918 AGGAAGAGAAGGGGAGGATGA 59.346 52.381 0.00 0.00 0.00 2.92
5802 6628 1.943860 AGAGGAAGAGAAGGGGAGGAT 59.056 52.381 0.00 0.00 0.00 3.24
5807 6633 1.631071 GGCCAGAGGAAGAGAAGGGG 61.631 65.000 0.00 0.00 0.00 4.79
5813 6639 1.746516 GCAATCAGGCCAGAGGAAGAG 60.747 57.143 5.01 0.00 0.00 2.85
5814 6640 0.254178 GCAATCAGGCCAGAGGAAGA 59.746 55.000 5.01 0.00 0.00 2.87
5815 6641 0.034767 TGCAATCAGGCCAGAGGAAG 60.035 55.000 5.01 0.00 0.00 3.46
5816 6642 0.034767 CTGCAATCAGGCCAGAGGAA 60.035 55.000 5.01 0.00 36.68 3.36
5818 6644 4.237445 CTGCAATCAGGCCAGAGG 57.763 61.111 5.01 0.00 36.68 3.69
5826 6652 1.019673 AATGCGCTACCTGCAATCAG 58.980 50.000 9.73 0.00 46.87 2.90
5827 6653 0.734309 CAATGCGCTACCTGCAATCA 59.266 50.000 9.73 0.00 46.87 2.57
5828 6654 0.734889 ACAATGCGCTACCTGCAATC 59.265 50.000 9.73 0.00 46.87 2.67
5829 6655 1.176527 AACAATGCGCTACCTGCAAT 58.823 45.000 9.73 0.00 46.87 3.56
5830 6656 0.958091 AAACAATGCGCTACCTGCAA 59.042 45.000 9.73 0.00 46.87 4.08
5832 6658 0.804989 AGAAACAATGCGCTACCTGC 59.195 50.000 9.73 0.00 38.57 4.85
5833 6659 2.349886 GAGAGAAACAATGCGCTACCTG 59.650 50.000 9.73 2.86 0.00 4.00
5834 6660 2.028112 TGAGAGAAACAATGCGCTACCT 60.028 45.455 9.73 0.00 0.00 3.08
5835 6661 2.094417 GTGAGAGAAACAATGCGCTACC 59.906 50.000 9.73 0.00 0.00 3.18
5836 6662 2.996621 AGTGAGAGAAACAATGCGCTAC 59.003 45.455 9.73 0.00 0.00 3.58
5837 6663 3.254060 GAGTGAGAGAAACAATGCGCTA 58.746 45.455 9.73 0.00 0.00 4.26
5838 6664 2.072298 GAGTGAGAGAAACAATGCGCT 58.928 47.619 9.73 0.00 0.00 5.92
5839 6665 1.129437 GGAGTGAGAGAAACAATGCGC 59.871 52.381 0.00 0.00 0.00 6.09
5840 6666 1.734465 GGGAGTGAGAGAAACAATGCG 59.266 52.381 0.00 0.00 0.00 4.73
5841 6667 3.006247 GAGGGAGTGAGAGAAACAATGC 58.994 50.000 0.00 0.00 0.00 3.56
5842 6668 4.277515 TGAGGGAGTGAGAGAAACAATG 57.722 45.455 0.00 0.00 0.00 2.82
5843 6669 4.349342 AGTTGAGGGAGTGAGAGAAACAAT 59.651 41.667 0.00 0.00 0.00 2.71
5844 6670 3.711704 AGTTGAGGGAGTGAGAGAAACAA 59.288 43.478 0.00 0.00 0.00 2.83
5845 6671 3.309296 AGTTGAGGGAGTGAGAGAAACA 58.691 45.455 0.00 0.00 0.00 2.83
5846 6672 5.011227 ACTTAGTTGAGGGAGTGAGAGAAAC 59.989 44.000 0.00 0.00 0.00 2.78
5847 6673 5.011125 CACTTAGTTGAGGGAGTGAGAGAAA 59.989 44.000 0.00 0.00 41.46 2.52
5848 6674 4.524714 CACTTAGTTGAGGGAGTGAGAGAA 59.475 45.833 0.00 0.00 41.46 2.87
5849 6675 4.082845 CACTTAGTTGAGGGAGTGAGAGA 58.917 47.826 0.00 0.00 41.46 3.10
5850 6676 4.082845 TCACTTAGTTGAGGGAGTGAGAG 58.917 47.826 1.25 0.00 42.42 3.20
5851 6677 4.114015 TCACTTAGTTGAGGGAGTGAGA 57.886 45.455 1.25 0.00 42.42 3.27
5852 6678 4.873746 TTCACTTAGTTGAGGGAGTGAG 57.126 45.455 5.36 0.00 46.29 3.51
5853 6679 5.623956 TTTTCACTTAGTTGAGGGAGTGA 57.376 39.130 1.25 1.25 44.74 3.41
5854 6680 5.182001 CCATTTTCACTTAGTTGAGGGAGTG 59.818 44.000 0.00 0.00 40.56 3.51
5855 6681 5.316987 CCATTTTCACTTAGTTGAGGGAGT 58.683 41.667 0.00 0.00 29.23 3.85
5856 6682 4.156739 GCCATTTTCACTTAGTTGAGGGAG 59.843 45.833 0.00 0.00 29.23 4.30
5857 6683 4.079253 GCCATTTTCACTTAGTTGAGGGA 58.921 43.478 0.00 0.00 0.00 4.20
5858 6684 4.082125 AGCCATTTTCACTTAGTTGAGGG 58.918 43.478 0.00 0.00 0.00 4.30
5859 6685 4.156739 GGAGCCATTTTCACTTAGTTGAGG 59.843 45.833 0.00 0.00 0.00 3.86
5860 6686 5.006386 AGGAGCCATTTTCACTTAGTTGAG 58.994 41.667 0.00 0.00 0.00 3.02
5861 6687 4.985538 AGGAGCCATTTTCACTTAGTTGA 58.014 39.130 0.00 0.00 0.00 3.18
5862 6688 4.761739 TGAGGAGCCATTTTCACTTAGTTG 59.238 41.667 0.00 0.00 0.00 3.16
5863 6689 4.762251 GTGAGGAGCCATTTTCACTTAGTT 59.238 41.667 0.00 0.00 37.53 2.24
5864 6690 4.327680 GTGAGGAGCCATTTTCACTTAGT 58.672 43.478 0.00 0.00 37.53 2.24
5865 6691 3.691609 GGTGAGGAGCCATTTTCACTTAG 59.308 47.826 6.59 0.00 39.78 2.18
5866 6692 3.073798 TGGTGAGGAGCCATTTTCACTTA 59.926 43.478 6.59 0.00 39.78 2.24
5867 6693 2.158475 TGGTGAGGAGCCATTTTCACTT 60.158 45.455 6.59 0.00 39.78 3.16
5868 6694 1.425066 TGGTGAGGAGCCATTTTCACT 59.575 47.619 6.59 0.00 39.78 3.41
5869 6695 1.909700 TGGTGAGGAGCCATTTTCAC 58.090 50.000 0.00 0.00 39.29 3.18
5870 6696 2.238521 GTTGGTGAGGAGCCATTTTCA 58.761 47.619 0.00 0.00 35.71 2.69
5871 6697 2.029918 GTGTTGGTGAGGAGCCATTTTC 60.030 50.000 0.00 0.00 35.71 2.29
5872 6698 1.963515 GTGTTGGTGAGGAGCCATTTT 59.036 47.619 0.00 0.00 35.71 1.82
5873 6699 1.145738 AGTGTTGGTGAGGAGCCATTT 59.854 47.619 0.00 0.00 35.71 2.32
5874 6700 0.773644 AGTGTTGGTGAGGAGCCATT 59.226 50.000 0.00 0.00 35.71 3.16
5875 6701 0.037303 CAGTGTTGGTGAGGAGCCAT 59.963 55.000 0.00 0.00 35.71 4.40
5876 6702 1.451504 CAGTGTTGGTGAGGAGCCA 59.548 57.895 0.00 0.00 0.00 4.75
5877 6703 1.302832 CCAGTGTTGGTGAGGAGCC 60.303 63.158 0.00 0.00 39.79 4.70
5878 6704 4.386413 CCAGTGTTGGTGAGGAGC 57.614 61.111 0.00 0.00 39.79 4.70
5887 6713 1.507141 GCGAGGGTTGACCAGTGTTG 61.507 60.000 2.12 0.00 43.89 3.33
5888 6714 1.227853 GCGAGGGTTGACCAGTGTT 60.228 57.895 2.12 0.00 43.89 3.32
5889 6715 2.426023 GCGAGGGTTGACCAGTGT 59.574 61.111 2.12 0.00 43.89 3.55
5890 6716 2.358737 GGCGAGGGTTGACCAGTG 60.359 66.667 2.12 0.00 43.89 3.66
5891 6717 3.637273 GGGCGAGGGTTGACCAGT 61.637 66.667 2.12 0.00 43.89 4.00
5892 6718 3.316573 GAGGGCGAGGGTTGACCAG 62.317 68.421 2.12 0.00 43.89 4.00
5893 6719 3.319198 GAGGGCGAGGGTTGACCA 61.319 66.667 2.12 0.00 43.89 4.02
5894 6720 4.452733 CGAGGGCGAGGGTTGACC 62.453 72.222 0.00 0.00 40.82 4.02
5911 6737 4.043200 GACGTTGCTGGCAAGGGC 62.043 66.667 24.81 20.93 43.54 5.19
5912 6738 3.726517 CGACGTTGCTGGCAAGGG 61.727 66.667 24.81 15.41 43.54 3.95
5913 6739 2.972505 ACGACGTTGCTGGCAAGG 60.973 61.111 21.29 21.29 44.43 3.61
5914 6740 2.249309 CACGACGTTGCTGGCAAG 59.751 61.111 8.34 5.88 36.52 4.01
5915 6741 3.276091 CCACGACGTTGCTGGCAA 61.276 61.111 1.65 3.72 0.00 4.52
5916 6742 4.539083 ACCACGACGTTGCTGGCA 62.539 61.111 18.72 0.00 0.00 4.92
5917 6743 3.712881 GACCACGACGTTGCTGGC 61.713 66.667 18.72 11.18 0.00 4.85
5918 6744 2.279851 TGACCACGACGTTGCTGG 60.280 61.111 17.73 17.73 0.00 4.85
5919 6745 2.310233 CCTGACCACGACGTTGCTG 61.310 63.158 1.65 0.66 0.00 4.41
5920 6746 2.029073 CCTGACCACGACGTTGCT 59.971 61.111 1.65 0.00 0.00 3.91
5921 6747 3.712881 GCCTGACCACGACGTTGC 61.713 66.667 1.65 0.00 0.00 4.17
5922 6748 2.279851 TGCCTGACCACGACGTTG 60.280 61.111 0.00 0.00 0.00 4.10
5923 6749 2.279918 GTGCCTGACCACGACGTT 60.280 61.111 0.00 0.00 0.00 3.99
5929 6755 3.869473 TAACGGCGTGCCTGACCAC 62.869 63.158 15.70 0.00 0.00 4.16
5930 6756 3.617735 TAACGGCGTGCCTGACCA 61.618 61.111 15.70 0.00 0.00 4.02
5931 6757 3.116531 GTAACGGCGTGCCTGACC 61.117 66.667 15.70 0.00 0.00 4.02
5932 6758 2.048503 AGTAACGGCGTGCCTGAC 60.049 61.111 15.70 7.24 0.00 3.51
5933 6759 2.048597 CAGTAACGGCGTGCCTGA 60.049 61.111 26.00 4.40 0.00 3.86
5934 6760 2.357034 ACAGTAACGGCGTGCCTG 60.357 61.111 27.43 27.43 0.00 4.85
5935 6761 2.048503 GACAGTAACGGCGTGCCT 60.049 61.111 15.70 9.88 0.00 4.75
5936 6762 1.623973 GAAGACAGTAACGGCGTGCC 61.624 60.000 15.70 7.27 0.00 5.01
5937 6763 1.779683 GAAGACAGTAACGGCGTGC 59.220 57.895 15.70 10.30 0.00 5.34
5938 6764 1.342082 CCGAAGACAGTAACGGCGTG 61.342 60.000 15.70 2.87 38.98 5.34
5939 6765 1.080974 CCGAAGACAGTAACGGCGT 60.081 57.895 6.77 6.77 38.98 5.68
5940 6766 1.804326 CCCGAAGACAGTAACGGCG 60.804 63.158 4.80 4.80 43.37 6.46
5941 6767 1.447314 CCCCGAAGACAGTAACGGC 60.447 63.158 0.00 0.00 43.37 5.68
5942 6768 0.389426 CACCCCGAAGACAGTAACGG 60.389 60.000 0.00 0.00 44.16 4.44
5943 6769 0.389426 CCACCCCGAAGACAGTAACG 60.389 60.000 0.00 0.00 0.00 3.18
5944 6770 0.683412 ACCACCCCGAAGACAGTAAC 59.317 55.000 0.00 0.00 0.00 2.50
5945 6771 0.971386 GACCACCCCGAAGACAGTAA 59.029 55.000 0.00 0.00 0.00 2.24
5946 6772 0.901580 GGACCACCCCGAAGACAGTA 60.902 60.000 0.00 0.00 0.00 2.74
5947 6773 2.214920 GGACCACCCCGAAGACAGT 61.215 63.158 0.00 0.00 0.00 3.55
5948 6774 1.913762 AGGACCACCCCGAAGACAG 60.914 63.158 0.00 0.00 36.73 3.51
5949 6775 2.203182 AGGACCACCCCGAAGACA 59.797 61.111 0.00 0.00 36.73 3.41
5950 6776 2.663196 CAGGACCACCCCGAAGAC 59.337 66.667 0.00 0.00 36.73 3.01
5951 6777 2.606519 CCAGGACCACCCCGAAGA 60.607 66.667 0.00 0.00 36.73 2.87
5952 6778 4.410400 GCCAGGACCACCCCGAAG 62.410 72.222 0.00 0.00 36.73 3.79
5953 6779 4.974438 AGCCAGGACCACCCCGAA 62.974 66.667 0.00 0.00 36.73 4.30
5957 6783 4.083862 GTCGAGCCAGGACCACCC 62.084 72.222 0.00 0.00 36.73 4.61
5962 6788 2.128507 CCTAGGGTCGAGCCAGGAC 61.129 68.421 31.70 11.78 39.65 3.85
5963 6789 2.279073 CCTAGGGTCGAGCCAGGA 59.721 66.667 31.70 19.55 39.65 3.86
5964 6790 2.840102 CCCTAGGGTCGAGCCAGG 60.840 72.222 33.52 31.35 39.65 4.45
5976 6802 4.408821 TTGGCCGCAGCACCCTAG 62.409 66.667 0.00 0.00 42.56 3.02
5977 6803 4.408821 CTTGGCCGCAGCACCCTA 62.409 66.667 0.00 0.00 42.56 3.53
6006 6832 3.689002 GAAGCTCAGCGGAAGGGGG 62.689 68.421 0.00 0.00 0.00 5.40
6007 6833 2.124942 GAAGCTCAGCGGAAGGGG 60.125 66.667 0.00 0.00 0.00 4.79
6008 6834 1.743252 GTGAAGCTCAGCGGAAGGG 60.743 63.158 0.00 0.00 0.00 3.95
6009 6835 1.004560 TGTGAAGCTCAGCGGAAGG 60.005 57.895 0.00 0.00 0.00 3.46
6010 6836 1.018226 CCTGTGAAGCTCAGCGGAAG 61.018 60.000 0.00 0.00 0.00 3.46
6011 6837 1.004560 CCTGTGAAGCTCAGCGGAA 60.005 57.895 0.00 0.00 0.00 4.30
6012 6838 2.659016 CCTGTGAAGCTCAGCGGA 59.341 61.111 0.00 0.00 0.00 5.54
6013 6839 3.123620 GCCTGTGAAGCTCAGCGG 61.124 66.667 0.00 0.00 0.00 5.52
6014 6840 2.357881 TGCCTGTGAAGCTCAGCG 60.358 61.111 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.