Multiple sequence alignment - TraesCS6D01G383600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G383600 chr6D 100.000 5828 0 0 1 5828 462482712 462488539 0.000000e+00 10763.0
1 TraesCS6D01G383600 chr6D 91.011 89 7 1 283 371 413065844 413065931 1.030000e-22 119.0
2 TraesCS6D01G383600 chr6D 96.610 59 2 0 2727 2785 157662034 157661976 1.340000e-16 99.0
3 TraesCS6D01G383600 chr6A 90.856 4834 280 49 1061 5782 609285023 609289806 0.000000e+00 6329.0
4 TraesCS6D01G383600 chr6A 86.742 445 44 9 372 804 609283948 609284389 1.140000e-131 481.0
5 TraesCS6D01G383600 chr6A 93.506 154 3 2 838 985 609284388 609284540 7.600000e-54 222.0
6 TraesCS6D01G383600 chr6B 92.164 4454 224 55 1377 5782 704971316 704975692 0.000000e+00 6176.0
7 TraesCS6D01G383600 chr6B 81.997 661 61 32 421 1049 704970340 704970974 5.210000e-140 508.0
8 TraesCS6D01G383600 chr6B 89.888 89 8 1 286 374 351200139 351200052 4.770000e-21 113.0
9 TraesCS6D01G383600 chr6B 95.918 49 2 0 36 84 704970289 704970337 4.840000e-11 80.5
10 TraesCS6D01G383600 chr3D 93.275 684 41 5 2413 3093 537652793 537653474 0.000000e+00 1003.0
11 TraesCS6D01G383600 chr3D 92.105 684 49 5 2413 3093 537647607 537648288 0.000000e+00 959.0
12 TraesCS6D01G383600 chr3D 91.304 92 5 3 282 371 583491806 583491896 7.930000e-24 122.0
13 TraesCS6D01G383600 chr3D 98.305 59 1 0 2727 2785 105174646 105174704 2.870000e-18 104.0
14 TraesCS6D01G383600 chr3D 98.305 59 1 0 2727 2785 105252424 105252482 2.870000e-18 104.0
15 TraesCS6D01G383600 chr3D 76.829 164 33 5 375 536 58555552 58555392 2.890000e-13 87.9
16 TraesCS6D01G383600 chr1B 91.316 380 30 3 2717 3096 577993507 577993131 3.110000e-142 516.0
17 TraesCS6D01G383600 chr1B 91.045 134 10 2 2440 2571 577993688 577993555 4.640000e-41 180.0
18 TraesCS6D01G383600 chr2B 80.916 524 93 6 1977 2498 11076223 11076741 1.960000e-109 407.0
19 TraesCS6D01G383600 chr5A 82.353 289 24 15 2113 2400 338378693 338378955 5.880000e-55 226.0
20 TraesCS6D01G383600 chr5A 93.023 86 5 1 286 371 362170893 362170809 2.210000e-24 124.0
21 TraesCS6D01G383600 chr5D 84.444 225 20 11 2113 2336 255368893 255369103 2.130000e-49 207.0
22 TraesCS6D01G383600 chr5D 96.610 59 2 0 2727 2785 377279752 377279810 1.340000e-16 99.0
23 TraesCS6D01G383600 chr4B 84.000 225 19 12 2113 2336 43226103 43225895 3.560000e-47 200.0
24 TraesCS6D01G383600 chr4B 90.698 86 7 1 286 371 606636934 606636850 4.770000e-21 113.0
25 TraesCS6D01G383600 chr5B 82.667 225 18 15 2113 2336 286876425 286876221 4.640000e-41 180.0
26 TraesCS6D01G383600 chr7A 91.860 86 6 1 286 371 5487210 5487294 1.030000e-22 119.0
27 TraesCS6D01G383600 chr7A 90.110 91 6 2 286 375 654789584 654789672 1.330000e-21 115.0
28 TraesCS6D01G383600 chr7D 79.651 172 26 9 372 541 28334744 28334908 1.330000e-21 115.0
29 TraesCS6D01G383600 chr3B 88.542 96 9 2 277 371 756684988 756684894 1.330000e-21 115.0
30 TraesCS6D01G383600 chrUn 91.566 83 6 1 289 371 311107127 311107046 4.770000e-21 113.0
31 TraesCS6D01G383600 chr4D 77.711 166 29 6 372 537 499588649 499588806 1.730000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G383600 chr6D 462482712 462488539 5827 False 10763.000000 10763 100.000000 1 5828 1 chr6D.!!$F2 5827
1 TraesCS6D01G383600 chr6A 609283948 609289806 5858 False 2344.000000 6329 90.368000 372 5782 3 chr6A.!!$F1 5410
2 TraesCS6D01G383600 chr6B 704970289 704975692 5403 False 2254.833333 6176 90.026333 36 5782 3 chr6B.!!$F1 5746
3 TraesCS6D01G383600 chr3D 537652793 537653474 681 False 1003.000000 1003 93.275000 2413 3093 1 chr3D.!!$F4 680
4 TraesCS6D01G383600 chr3D 537647607 537648288 681 False 959.000000 959 92.105000 2413 3093 1 chr3D.!!$F3 680
5 TraesCS6D01G383600 chr1B 577993131 577993688 557 True 348.000000 516 91.180500 2440 3096 2 chr1B.!!$R1 656
6 TraesCS6D01G383600 chr2B 11076223 11076741 518 False 407.000000 407 80.916000 1977 2498 1 chr2B.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
956 990 0.037605 CTTCCGCGACTAACCCAAGT 60.038 55.0 8.23 0.00 0.00 3.16 F
1304 1769 0.106708 TGAAGAACTGCGGCTGAACT 59.893 50.0 14.07 8.88 0.00 3.01 F
1312 1777 0.320421 TGCGGCTGAACTTGAGGTAC 60.320 55.0 0.00 0.00 0.00 3.34 F
1528 2051 0.963962 CTTGTTCATGCAGGTGGCTT 59.036 50.0 0.00 0.00 45.15 4.35 F
2598 3142 1.021968 GTTATTGGGGTGGACGATGC 58.978 55.0 0.00 0.00 0.00 3.91 F
4289 4862 0.037790 TGATGTCGATGTGGTTCGCA 60.038 50.0 0.00 0.00 38.97 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 3142 0.391661 CCTGACCTCCACAACATCCG 60.392 60.000 0.00 0.0 0.00 4.18 R
3214 3758 2.734591 GCGGCGTCCCTGATCATA 59.265 61.111 9.37 0.0 0.00 2.15 R
3466 4010 2.440409 GACGAGTACCCACTGGAGTAA 58.560 52.381 0.00 0.0 34.21 2.24 R
3642 4186 8.897872 AATTTGAAATGAGCTTGTCAGAAATT 57.102 26.923 0.00 0.0 39.07 1.82 R
4326 4899 0.103208 GATCGATGGCAGTTCCTCGT 59.897 55.000 0.54 0.0 37.05 4.18 R
5654 6305 0.179936 CAATGTCTGCCTCTCCCTCC 59.820 60.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.943653 CGGGCGGTGTTTTGAGTC 59.056 61.111 0.00 0.00 0.00 3.36
19 20 1.595929 GGGCGGTGTTTTGAGTCGA 60.596 57.895 0.00 0.00 0.00 4.20
22 23 1.265905 GGCGGTGTTTTGAGTCGATTT 59.734 47.619 0.00 0.00 0.00 2.17
23 24 2.287368 GGCGGTGTTTTGAGTCGATTTT 60.287 45.455 0.00 0.00 0.00 1.82
24 25 3.368495 GCGGTGTTTTGAGTCGATTTTT 58.632 40.909 0.00 0.00 0.00 1.94
40 41 2.421751 TTTTTGGTTGGTCGGAGTCA 57.578 45.000 0.00 0.00 0.00 3.41
73 74 2.298661 CCGTACTCCCCCAAGCCTT 61.299 63.158 0.00 0.00 0.00 4.35
84 85 2.519013 CCCAAGCCTTCTTAGTTTGCT 58.481 47.619 0.00 0.00 0.00 3.91
85 86 2.893489 CCCAAGCCTTCTTAGTTTGCTT 59.107 45.455 0.00 0.00 42.62 3.91
86 87 3.057245 CCCAAGCCTTCTTAGTTTGCTTC 60.057 47.826 0.00 0.00 40.08 3.86
87 88 3.823304 CCAAGCCTTCTTAGTTTGCTTCT 59.177 43.478 0.00 0.00 40.08 2.85
88 89 4.320788 CCAAGCCTTCTTAGTTTGCTTCTG 60.321 45.833 0.00 0.00 40.08 3.02
89 90 4.092116 AGCCTTCTTAGTTTGCTTCTGT 57.908 40.909 0.00 0.00 0.00 3.41
90 91 4.464947 AGCCTTCTTAGTTTGCTTCTGTT 58.535 39.130 0.00 0.00 0.00 3.16
91 92 4.276926 AGCCTTCTTAGTTTGCTTCTGTTG 59.723 41.667 0.00 0.00 0.00 3.33
92 93 4.036852 GCCTTCTTAGTTTGCTTCTGTTGT 59.963 41.667 0.00 0.00 0.00 3.32
93 94 5.450550 GCCTTCTTAGTTTGCTTCTGTTGTT 60.451 40.000 0.00 0.00 0.00 2.83
94 95 6.202226 CCTTCTTAGTTTGCTTCTGTTGTTC 58.798 40.000 0.00 0.00 0.00 3.18
95 96 6.038714 CCTTCTTAGTTTGCTTCTGTTGTTCT 59.961 38.462 0.00 0.00 0.00 3.01
96 97 6.363577 TCTTAGTTTGCTTCTGTTGTTCTG 57.636 37.500 0.00 0.00 0.00 3.02
97 98 3.427161 AGTTTGCTTCTGTTGTTCTGC 57.573 42.857 0.00 0.00 0.00 4.26
98 99 2.111756 GTTTGCTTCTGTTGTTCTGCG 58.888 47.619 0.00 0.00 0.00 5.18
99 100 0.662619 TTGCTTCTGTTGTTCTGCGG 59.337 50.000 0.00 0.00 0.00 5.69
100 101 1.165907 TGCTTCTGTTGTTCTGCGGG 61.166 55.000 0.00 0.00 0.00 6.13
101 102 0.884704 GCTTCTGTTGTTCTGCGGGA 60.885 55.000 0.00 0.00 0.00 5.14
102 103 1.593196 CTTCTGTTGTTCTGCGGGAA 58.407 50.000 0.00 0.00 0.00 3.97
103 104 1.946768 CTTCTGTTGTTCTGCGGGAAA 59.053 47.619 0.00 0.00 35.51 3.13
104 105 2.045561 TCTGTTGTTCTGCGGGAAAA 57.954 45.000 0.00 0.00 35.51 2.29
105 106 2.582052 TCTGTTGTTCTGCGGGAAAAT 58.418 42.857 0.00 0.00 35.51 1.82
106 107 2.293122 TCTGTTGTTCTGCGGGAAAATG 59.707 45.455 0.00 0.00 35.51 2.32
107 108 1.339610 TGTTGTTCTGCGGGAAAATGG 59.660 47.619 0.00 0.00 35.51 3.16
108 109 1.611491 GTTGTTCTGCGGGAAAATGGA 59.389 47.619 0.00 0.00 35.51 3.41
109 110 1.243902 TGTTCTGCGGGAAAATGGAC 58.756 50.000 0.00 0.00 35.51 4.02
110 111 1.243902 GTTCTGCGGGAAAATGGACA 58.756 50.000 0.00 0.00 35.51 4.02
111 112 1.611491 GTTCTGCGGGAAAATGGACAA 59.389 47.619 0.00 0.00 35.51 3.18
112 113 1.988293 TCTGCGGGAAAATGGACAAA 58.012 45.000 0.00 0.00 0.00 2.83
113 114 1.611491 TCTGCGGGAAAATGGACAAAC 59.389 47.619 0.00 0.00 0.00 2.93
114 115 0.312416 TGCGGGAAAATGGACAAACG 59.688 50.000 0.00 0.00 0.00 3.60
115 116 0.388006 GCGGGAAAATGGACAAACGG 60.388 55.000 0.00 0.00 0.00 4.44
116 117 1.240256 CGGGAAAATGGACAAACGGA 58.760 50.000 0.00 0.00 0.00 4.69
117 118 1.199097 CGGGAAAATGGACAAACGGAG 59.801 52.381 0.00 0.00 0.00 4.63
119 120 2.228103 GGGAAAATGGACAAACGGAGTC 59.772 50.000 0.00 0.00 45.00 3.36
146 147 3.174788 GGAACGGCGTTGGATGAC 58.825 61.111 31.90 14.18 0.00 3.06
147 148 1.669760 GGAACGGCGTTGGATGACA 60.670 57.895 31.90 0.00 0.00 3.58
148 149 1.231958 GGAACGGCGTTGGATGACAA 61.232 55.000 31.90 0.00 36.54 3.18
149 150 0.589223 GAACGGCGTTGGATGACAAA 59.411 50.000 31.90 0.00 41.58 2.83
150 151 0.591170 AACGGCGTTGGATGACAAAG 59.409 50.000 26.22 0.00 41.58 2.77
153 154 4.440214 CGTTGGATGACAAAGCGC 57.560 55.556 0.00 0.00 41.58 5.92
154 155 1.509787 CGTTGGATGACAAAGCGCG 60.510 57.895 0.00 0.00 41.58 6.86
155 156 1.574428 GTTGGATGACAAAGCGCGT 59.426 52.632 8.43 0.00 41.58 6.01
156 157 0.452784 GTTGGATGACAAAGCGCGTC 60.453 55.000 8.43 4.09 41.58 5.19
157 158 0.602638 TTGGATGACAAAGCGCGTCT 60.603 50.000 8.43 1.94 35.79 4.18
158 159 0.245266 TGGATGACAAAGCGCGTCTA 59.755 50.000 8.43 2.96 34.37 2.59
159 160 0.924090 GGATGACAAAGCGCGTCTAG 59.076 55.000 8.43 4.82 34.37 2.43
160 161 1.469251 GGATGACAAAGCGCGTCTAGA 60.469 52.381 8.43 0.00 34.37 2.43
161 162 1.584308 GATGACAAAGCGCGTCTAGAC 59.416 52.381 13.18 13.18 34.37 2.59
162 163 0.312729 TGACAAAGCGCGTCTAGACA 59.687 50.000 22.37 6.07 34.37 3.41
163 164 1.269361 TGACAAAGCGCGTCTAGACAA 60.269 47.619 22.37 0.00 34.37 3.18
164 165 1.993370 GACAAAGCGCGTCTAGACAAT 59.007 47.619 22.37 2.24 0.00 2.71
165 166 1.726791 ACAAAGCGCGTCTAGACAATG 59.273 47.619 22.37 11.88 0.00 2.82
166 167 0.721718 AAAGCGCGTCTAGACAATGC 59.278 50.000 22.37 20.09 0.00 3.56
167 168 0.108615 AAGCGCGTCTAGACAATGCT 60.109 50.000 22.37 21.78 35.24 3.79
168 169 0.803768 AGCGCGTCTAGACAATGCTG 60.804 55.000 24.47 15.79 33.42 4.41
169 170 1.633171 CGCGTCTAGACAATGCTGC 59.367 57.895 22.37 14.55 0.00 5.25
170 171 1.078201 CGCGTCTAGACAATGCTGCA 61.078 55.000 22.37 4.13 0.00 4.41
171 172 1.293924 GCGTCTAGACAATGCTGCAT 58.706 50.000 22.37 9.81 0.00 3.96
172 173 1.004185 GCGTCTAGACAATGCTGCATG 60.004 52.381 22.37 12.48 0.00 4.06
173 174 2.274437 CGTCTAGACAATGCTGCATGT 58.726 47.619 22.37 15.53 0.00 3.21
174 175 3.447742 CGTCTAGACAATGCTGCATGTA 58.552 45.455 22.37 5.17 0.00 2.29
175 176 3.243877 CGTCTAGACAATGCTGCATGTAC 59.756 47.826 22.37 10.07 0.00 2.90
176 177 3.243877 GTCTAGACAATGCTGCATGTACG 59.756 47.826 17.00 7.87 0.00 3.67
177 178 2.099141 AGACAATGCTGCATGTACGT 57.901 45.000 17.00 11.02 0.00 3.57
178 179 3.245518 AGACAATGCTGCATGTACGTA 57.754 42.857 17.00 0.00 0.00 3.57
179 180 3.797039 AGACAATGCTGCATGTACGTAT 58.203 40.909 17.00 6.03 0.00 3.06
180 181 3.557185 AGACAATGCTGCATGTACGTATG 59.443 43.478 17.00 11.00 0.00 2.39
187 188 1.778334 GCATGTACGTATGCGGATGA 58.222 50.000 8.39 0.00 43.36 2.92
188 189 2.337583 GCATGTACGTATGCGGATGAT 58.662 47.619 8.39 0.00 43.36 2.45
189 190 2.736721 GCATGTACGTATGCGGATGATT 59.263 45.455 8.39 0.00 43.36 2.57
190 191 3.186409 GCATGTACGTATGCGGATGATTT 59.814 43.478 8.39 0.00 43.36 2.17
191 192 4.387559 GCATGTACGTATGCGGATGATTTA 59.612 41.667 8.39 0.00 43.36 1.40
192 193 5.107259 GCATGTACGTATGCGGATGATTTAA 60.107 40.000 8.39 0.00 43.36 1.52
193 194 6.525355 CATGTACGTATGCGGATGATTTAAG 58.475 40.000 8.39 0.00 43.45 1.85
194 195 4.986034 TGTACGTATGCGGATGATTTAAGG 59.014 41.667 8.39 0.00 43.45 2.69
195 196 3.399330 ACGTATGCGGATGATTTAAGGG 58.601 45.455 8.39 0.00 43.45 3.95
196 197 3.181458 ACGTATGCGGATGATTTAAGGGT 60.181 43.478 8.39 0.00 43.45 4.34
197 198 3.432252 CGTATGCGGATGATTTAAGGGTC 59.568 47.826 0.00 0.00 0.00 4.46
198 199 1.948104 TGCGGATGATTTAAGGGTCG 58.052 50.000 0.00 0.00 0.00 4.79
199 200 1.226746 GCGGATGATTTAAGGGTCGG 58.773 55.000 0.00 0.00 0.00 4.79
200 201 1.226746 CGGATGATTTAAGGGTCGGC 58.773 55.000 0.00 0.00 0.00 5.54
201 202 1.202651 CGGATGATTTAAGGGTCGGCT 60.203 52.381 0.00 0.00 0.00 5.52
202 203 2.745152 CGGATGATTTAAGGGTCGGCTT 60.745 50.000 0.00 0.00 0.00 4.35
203 204 3.288092 GGATGATTTAAGGGTCGGCTTT 58.712 45.455 0.00 0.00 0.00 3.51
204 205 3.315470 GGATGATTTAAGGGTCGGCTTTC 59.685 47.826 0.00 0.00 0.00 2.62
205 206 3.426787 TGATTTAAGGGTCGGCTTTCA 57.573 42.857 0.00 0.00 0.00 2.69
206 207 3.757270 TGATTTAAGGGTCGGCTTTCAA 58.243 40.909 0.00 0.00 0.00 2.69
207 208 3.756434 TGATTTAAGGGTCGGCTTTCAAG 59.244 43.478 0.00 0.00 0.00 3.02
208 209 3.495434 TTTAAGGGTCGGCTTTCAAGA 57.505 42.857 0.00 0.00 0.00 3.02
209 210 3.713826 TTAAGGGTCGGCTTTCAAGAT 57.286 42.857 0.00 0.00 0.00 2.40
210 211 1.826385 AAGGGTCGGCTTTCAAGATG 58.174 50.000 0.00 0.00 0.00 2.90
211 212 0.678048 AGGGTCGGCTTTCAAGATGC 60.678 55.000 0.00 0.00 0.00 3.91
212 213 1.657751 GGGTCGGCTTTCAAGATGCC 61.658 60.000 0.00 0.00 43.38 4.40
213 214 0.678048 GGTCGGCTTTCAAGATGCCT 60.678 55.000 11.12 0.00 44.35 4.75
214 215 1.168714 GTCGGCTTTCAAGATGCCTT 58.831 50.000 11.12 0.00 44.35 4.35
215 216 1.541588 GTCGGCTTTCAAGATGCCTTT 59.458 47.619 11.12 0.00 44.35 3.11
216 217 2.747446 GTCGGCTTTCAAGATGCCTTTA 59.253 45.455 11.12 0.00 44.35 1.85
217 218 2.747446 TCGGCTTTCAAGATGCCTTTAC 59.253 45.455 11.12 0.00 44.35 2.01
218 219 2.749621 CGGCTTTCAAGATGCCTTTACT 59.250 45.455 11.12 0.00 44.35 2.24
219 220 3.191371 CGGCTTTCAAGATGCCTTTACTT 59.809 43.478 11.12 0.00 44.35 2.24
220 221 4.394920 CGGCTTTCAAGATGCCTTTACTTA 59.605 41.667 11.12 0.00 44.35 2.24
221 222 5.066505 CGGCTTTCAAGATGCCTTTACTTAT 59.933 40.000 11.12 0.00 44.35 1.73
222 223 6.404734 CGGCTTTCAAGATGCCTTTACTTATT 60.405 38.462 11.12 0.00 44.35 1.40
223 224 7.323420 GGCTTTCAAGATGCCTTTACTTATTT 58.677 34.615 0.00 0.00 43.45 1.40
224 225 7.489435 GGCTTTCAAGATGCCTTTACTTATTTC 59.511 37.037 0.00 0.00 43.45 2.17
225 226 8.028938 GCTTTCAAGATGCCTTTACTTATTTCA 58.971 33.333 0.00 0.00 0.00 2.69
228 229 8.806429 TCAAGATGCCTTTACTTATTTCATCA 57.194 30.769 0.00 0.00 33.34 3.07
229 230 9.241919 TCAAGATGCCTTTACTTATTTCATCAA 57.758 29.630 0.00 0.00 33.34 2.57
232 233 8.562892 AGATGCCTTTACTTATTTCATCAATCG 58.437 33.333 0.00 0.00 33.34 3.34
233 234 7.624360 TGCCTTTACTTATTTCATCAATCGT 57.376 32.000 0.00 0.00 0.00 3.73
234 235 7.471721 TGCCTTTACTTATTTCATCAATCGTG 58.528 34.615 0.00 0.00 0.00 4.35
235 236 7.335673 TGCCTTTACTTATTTCATCAATCGTGA 59.664 33.333 0.00 0.00 38.41 4.35
236 237 8.345565 GCCTTTACTTATTTCATCAATCGTGAT 58.654 33.333 0.00 0.00 45.80 3.06
242 243 9.357652 ACTTATTTCATCAATCGTGATTTTTGG 57.642 29.630 0.00 0.00 42.03 3.28
243 244 9.571810 CTTATTTCATCAATCGTGATTTTTGGA 57.428 29.630 0.00 0.00 42.03 3.53
244 245 9.920133 TTATTTCATCAATCGTGATTTTTGGAA 57.080 25.926 0.00 0.00 42.03 3.53
245 246 8.830201 ATTTCATCAATCGTGATTTTTGGAAA 57.170 26.923 0.00 2.66 42.03 3.13
246 247 7.872163 TTCATCAATCGTGATTTTTGGAAAG 57.128 32.000 0.00 0.00 42.03 2.62
247 248 7.213216 TCATCAATCGTGATTTTTGGAAAGA 57.787 32.000 0.00 0.00 42.03 2.52
248 249 7.829725 TCATCAATCGTGATTTTTGGAAAGAT 58.170 30.769 0.00 0.00 42.03 2.40
249 250 7.756272 TCATCAATCGTGATTTTTGGAAAGATG 59.244 33.333 0.00 0.00 42.03 2.90
250 251 7.213216 TCAATCGTGATTTTTGGAAAGATGA 57.787 32.000 0.00 0.00 0.00 2.92
251 252 7.083858 TCAATCGTGATTTTTGGAAAGATGAC 58.916 34.615 0.00 0.00 0.00 3.06
252 253 5.029650 TCGTGATTTTTGGAAAGATGACG 57.970 39.130 7.88 7.88 39.91 4.35
253 254 4.752604 TCGTGATTTTTGGAAAGATGACGA 59.247 37.500 11.44 11.44 43.02 4.20
254 255 5.411361 TCGTGATTTTTGGAAAGATGACGAT 59.589 36.000 11.44 0.00 41.45 3.73
255 256 5.509272 CGTGATTTTTGGAAAGATGACGATG 59.491 40.000 8.33 0.00 40.59 3.84
256 257 5.287035 GTGATTTTTGGAAAGATGACGATGC 59.713 40.000 0.00 0.00 0.00 3.91
257 258 3.469899 TTTTGGAAAGATGACGATGCG 57.530 42.857 0.00 0.00 0.00 4.73
258 259 2.093306 TTGGAAAGATGACGATGCGT 57.907 45.000 0.00 0.00 45.10 5.24
259 260 1.358877 TGGAAAGATGACGATGCGTG 58.641 50.000 0.00 0.00 41.37 5.34
260 261 1.337728 TGGAAAGATGACGATGCGTGT 60.338 47.619 0.00 0.00 41.37 4.49
261 262 2.094442 TGGAAAGATGACGATGCGTGTA 60.094 45.455 0.00 0.00 41.37 2.90
262 263 3.123804 GGAAAGATGACGATGCGTGTAT 58.876 45.455 0.00 0.00 41.37 2.29
263 264 3.555956 GGAAAGATGACGATGCGTGTATT 59.444 43.478 0.00 0.00 41.37 1.89
264 265 4.743151 GGAAAGATGACGATGCGTGTATTA 59.257 41.667 0.00 0.00 41.37 0.98
265 266 5.405571 GGAAAGATGACGATGCGTGTATTAT 59.594 40.000 0.00 0.00 41.37 1.28
266 267 6.073765 GGAAAGATGACGATGCGTGTATTATT 60.074 38.462 0.00 0.00 41.37 1.40
267 268 6.453643 AAGATGACGATGCGTGTATTATTC 57.546 37.500 0.00 0.00 41.37 1.75
268 269 5.528870 AGATGACGATGCGTGTATTATTCA 58.471 37.500 0.00 0.00 41.37 2.57
269 270 5.402568 AGATGACGATGCGTGTATTATTCAC 59.597 40.000 0.00 0.00 41.37 3.18
270 271 3.799963 TGACGATGCGTGTATTATTCACC 59.200 43.478 0.00 0.00 41.37 4.02
271 272 3.787785 ACGATGCGTGTATTATTCACCA 58.212 40.909 0.00 0.00 39.18 4.17
272 273 4.377021 ACGATGCGTGTATTATTCACCAT 58.623 39.130 0.00 5.95 39.18 3.55
273 274 4.814234 ACGATGCGTGTATTATTCACCATT 59.186 37.500 0.00 0.00 39.18 3.16
274 275 5.050363 ACGATGCGTGTATTATTCACCATTC 60.050 40.000 0.00 0.00 39.18 2.67
275 276 5.177511 CGATGCGTGTATTATTCACCATTCT 59.822 40.000 7.12 0.00 31.87 2.40
276 277 5.733226 TGCGTGTATTATTCACCATTCTG 57.267 39.130 0.00 0.00 32.86 3.02
277 278 5.182487 TGCGTGTATTATTCACCATTCTGT 58.818 37.500 0.00 0.00 32.86 3.41
278 279 5.645929 TGCGTGTATTATTCACCATTCTGTT 59.354 36.000 0.00 0.00 32.86 3.16
279 280 6.819146 TGCGTGTATTATTCACCATTCTGTTA 59.181 34.615 0.00 0.00 32.86 2.41
280 281 7.497579 TGCGTGTATTATTCACCATTCTGTTAT 59.502 33.333 0.00 0.00 32.86 1.89
281 282 8.342634 GCGTGTATTATTCACCATTCTGTTATT 58.657 33.333 0.00 0.00 32.86 1.40
291 292 8.974060 TCACCATTCTGTTATTATTTACTCCC 57.026 34.615 0.00 0.00 0.00 4.30
292 293 8.778059 TCACCATTCTGTTATTATTTACTCCCT 58.222 33.333 0.00 0.00 0.00 4.20
293 294 9.057089 CACCATTCTGTTATTATTTACTCCCTC 57.943 37.037 0.00 0.00 0.00 4.30
294 295 8.218488 ACCATTCTGTTATTATTTACTCCCTCC 58.782 37.037 0.00 0.00 0.00 4.30
295 296 7.387948 CCATTCTGTTATTATTTACTCCCTCCG 59.612 40.741 0.00 0.00 0.00 4.63
296 297 7.427989 TTCTGTTATTATTTACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
297 298 7.047460 TCTGTTATTATTTACTCCCTCCGTC 57.953 40.000 0.00 0.00 0.00 4.79
298 299 6.041296 TCTGTTATTATTTACTCCCTCCGTCC 59.959 42.308 0.00 0.00 0.00 4.79
299 300 5.070847 TGTTATTATTTACTCCCTCCGTCCC 59.929 44.000 0.00 0.00 0.00 4.46
300 301 2.852714 TATTTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
301 302 1.961133 ATTTACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
302 303 1.732117 TTTACTCCCTCCGTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
303 304 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
304 305 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
305 306 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
306 307 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
307 308 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
308 309 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
309 310 4.475747 ACTCCCTCCGTCCCAAAATATAAA 59.524 41.667 0.00 0.00 0.00 1.40
310 311 5.044698 ACTCCCTCCGTCCCAAAATATAAAA 60.045 40.000 0.00 0.00 0.00 1.52
311 312 5.828871 TCCCTCCGTCCCAAAATATAAAAA 58.171 37.500 0.00 0.00 0.00 1.94
312 313 5.653330 TCCCTCCGTCCCAAAATATAAAAAC 59.347 40.000 0.00 0.00 0.00 2.43
313 314 5.449451 CCCTCCGTCCCAAAATATAAAAACG 60.449 44.000 0.00 0.00 0.00 3.60
314 315 5.124297 CCTCCGTCCCAAAATATAAAAACGT 59.876 40.000 0.00 0.00 0.00 3.99
315 316 6.349528 CCTCCGTCCCAAAATATAAAAACGTT 60.350 38.462 0.00 0.00 0.00 3.99
316 317 6.979465 TCCGTCCCAAAATATAAAAACGTTT 58.021 32.000 7.96 7.96 0.00 3.60
317 318 7.432059 TCCGTCCCAAAATATAAAAACGTTTT 58.568 30.769 20.26 20.26 0.00 2.43
318 319 7.924947 TCCGTCCCAAAATATAAAAACGTTTTT 59.075 29.630 33.94 33.94 42.51 1.94
340 341 8.893219 TTTTTACATTATGCATGGTGTCAAAA 57.107 26.923 21.62 21.62 37.17 2.44
341 342 8.893219 TTTTACATTATGCATGGTGTCAAAAA 57.107 26.923 18.40 16.75 37.17 1.94
342 343 7.881643 TTACATTATGCATGGTGTCAAAAAC 57.118 32.000 18.40 0.00 37.17 2.43
343 344 4.922692 ACATTATGCATGGTGTCAAAAACG 59.077 37.500 10.16 0.00 37.17 3.60
344 345 4.576216 TTATGCATGGTGTCAAAAACGT 57.424 36.364 10.16 0.00 0.00 3.99
345 346 2.949451 TGCATGGTGTCAAAAACGTT 57.051 40.000 0.00 0.00 0.00 3.99
346 347 2.803451 TGCATGGTGTCAAAAACGTTC 58.197 42.857 0.00 0.00 0.00 3.95
347 348 2.425312 TGCATGGTGTCAAAAACGTTCT 59.575 40.909 0.00 0.00 0.00 3.01
348 349 3.119316 TGCATGGTGTCAAAAACGTTCTT 60.119 39.130 0.00 0.00 0.00 2.52
349 350 4.096532 TGCATGGTGTCAAAAACGTTCTTA 59.903 37.500 0.00 0.00 0.00 2.10
350 351 5.219633 GCATGGTGTCAAAAACGTTCTTAT 58.780 37.500 0.00 0.00 0.00 1.73
351 352 6.017026 TGCATGGTGTCAAAAACGTTCTTATA 60.017 34.615 0.00 0.00 0.00 0.98
352 353 7.027161 GCATGGTGTCAAAAACGTTCTTATAT 58.973 34.615 0.00 0.00 0.00 0.86
353 354 7.218204 GCATGGTGTCAAAAACGTTCTTATATC 59.782 37.037 0.00 0.00 0.00 1.63
354 355 7.972832 TGGTGTCAAAAACGTTCTTATATCT 57.027 32.000 0.00 0.00 0.00 1.98
355 356 8.385898 TGGTGTCAAAAACGTTCTTATATCTT 57.614 30.769 0.00 0.00 0.00 2.40
356 357 8.286800 TGGTGTCAAAAACGTTCTTATATCTTG 58.713 33.333 0.00 0.00 0.00 3.02
357 358 7.749126 GGTGTCAAAAACGTTCTTATATCTTGG 59.251 37.037 0.00 0.00 0.00 3.61
358 359 7.749126 GTGTCAAAAACGTTCTTATATCTTGGG 59.251 37.037 0.00 0.00 0.00 4.12
359 360 7.662258 TGTCAAAAACGTTCTTATATCTTGGGA 59.338 33.333 0.00 0.00 0.00 4.37
360 361 7.961283 GTCAAAAACGTTCTTATATCTTGGGAC 59.039 37.037 0.00 0.00 0.00 4.46
361 362 6.657836 AAAACGTTCTTATATCTTGGGACG 57.342 37.500 0.00 0.00 0.00 4.79
362 363 4.317671 ACGTTCTTATATCTTGGGACGG 57.682 45.455 0.00 0.00 0.00 4.79
363 364 3.956199 ACGTTCTTATATCTTGGGACGGA 59.044 43.478 0.00 0.00 0.00 4.69
364 365 4.037684 ACGTTCTTATATCTTGGGACGGAG 59.962 45.833 0.00 0.00 0.00 4.63
365 366 4.558898 CGTTCTTATATCTTGGGACGGAGG 60.559 50.000 0.00 0.00 0.00 4.30
366 367 3.507411 TCTTATATCTTGGGACGGAGGG 58.493 50.000 0.00 0.00 0.00 4.30
367 368 3.141460 TCTTATATCTTGGGACGGAGGGA 59.859 47.826 0.00 0.00 0.00 4.20
368 369 2.016905 ATATCTTGGGACGGAGGGAG 57.983 55.000 0.00 0.00 0.00 4.30
369 370 0.635009 TATCTTGGGACGGAGGGAGT 59.365 55.000 0.00 0.00 0.00 3.85
370 371 0.635009 ATCTTGGGACGGAGGGAGTA 59.365 55.000 0.00 0.00 0.00 2.59
382 383 4.523558 ACGGAGGGAGTAATAGCTTACATC 59.476 45.833 0.00 0.00 39.81 3.06
388 389 8.785184 AGGGAGTAATAGCTTACATCTTTACT 57.215 34.615 0.00 0.00 39.81 2.24
390 391 9.262358 GGGAGTAATAGCTTACATCTTTACTTG 57.738 37.037 0.00 0.00 39.81 3.16
391 392 9.262358 GGAGTAATAGCTTACATCTTTACTTGG 57.738 37.037 0.00 0.00 39.81 3.61
399 400 7.121315 AGCTTACATCTTTACTTGGTTTCATCC 59.879 37.037 0.00 0.00 0.00 3.51
457 458 6.942532 TGGCCATGTATAATTCTTTCTGAC 57.057 37.500 0.00 0.00 0.00 3.51
458 459 6.422333 TGGCCATGTATAATTCTTTCTGACA 58.578 36.000 0.00 0.00 0.00 3.58
471 472 8.877808 ATTCTTTCTGACATTTTCCAAAACTC 57.122 30.769 0.00 0.00 0.00 3.01
475 476 9.455847 CTTTCTGACATTTTCCAAAACTCTAAG 57.544 33.333 0.00 0.00 0.00 2.18
566 572 4.447138 TGGAGGTATTTGTGGAAAGTGT 57.553 40.909 0.00 0.00 0.00 3.55
567 573 4.394729 TGGAGGTATTTGTGGAAAGTGTC 58.605 43.478 0.00 0.00 0.00 3.67
594 600 2.075426 AAAAGGCGCCAGTCACTTGC 62.075 55.000 31.54 0.00 0.00 4.01
599 605 3.971702 GCCAGTCACTTGCCCCCT 61.972 66.667 0.00 0.00 0.00 4.79
602 608 1.201429 CCAGTCACTTGCCCCCTACT 61.201 60.000 0.00 0.00 0.00 2.57
695 705 1.361204 TCTGCCAGGGAGACATTCAA 58.639 50.000 6.57 0.00 0.00 2.69
724 736 4.467084 CACCGCCAGCATACCCGT 62.467 66.667 0.00 0.00 0.00 5.28
725 737 4.467084 ACCGCCAGCATACCCGTG 62.467 66.667 0.00 0.00 0.00 4.94
761 781 9.859152 AAAATGAAATAAAAATCACCCCTTTCA 57.141 25.926 0.00 0.00 36.09 2.69
762 782 9.859152 AAATGAAATAAAAATCACCCCTTTCAA 57.141 25.926 0.00 0.00 35.51 2.69
804 824 1.342819 AGTCTTCGCTCAGCTTCTTGT 59.657 47.619 0.00 0.00 0.00 3.16
805 825 1.458827 GTCTTCGCTCAGCTTCTTGTG 59.541 52.381 0.00 0.00 0.00 3.33
806 826 0.165511 CTTCGCTCAGCTTCTTGTGC 59.834 55.000 0.00 0.00 34.99 4.57
807 827 0.532640 TTCGCTCAGCTTCTTGTGCA 60.533 50.000 0.00 0.00 37.41 4.57
808 828 0.947660 TCGCTCAGCTTCTTGTGCAG 60.948 55.000 0.00 0.00 37.41 4.41
809 829 1.209640 GCTCAGCTTCTTGTGCAGC 59.790 57.895 0.00 0.00 37.48 5.25
810 830 1.512996 GCTCAGCTTCTTGTGCAGCA 61.513 55.000 0.00 0.00 38.61 4.41
811 831 0.517755 CTCAGCTTCTTGTGCAGCAG 59.482 55.000 0.00 0.00 38.61 4.24
812 832 1.081376 CAGCTTCTTGTGCAGCAGC 60.081 57.895 0.00 0.00 38.61 5.25
833 853 4.135153 CGCGTCTGGCTACTGGCT 62.135 66.667 0.00 0.00 41.46 4.75
834 854 2.510238 GCGTCTGGCTACTGGCTG 60.510 66.667 0.00 0.00 41.46 4.85
835 855 2.185350 CGTCTGGCTACTGGCTGG 59.815 66.667 0.00 0.00 41.46 4.85
836 856 2.124942 GTCTGGCTACTGGCTGGC 60.125 66.667 0.00 0.00 41.46 4.85
837 857 2.284921 TCTGGCTACTGGCTGGCT 60.285 61.111 2.00 0.00 41.46 4.75
950 984 0.712222 CGGTTTCTTCCGCGACTAAC 59.288 55.000 8.23 4.35 43.96 2.34
956 990 0.037605 CTTCCGCGACTAACCCAAGT 60.038 55.000 8.23 0.00 0.00 3.16
984 1024 2.611518 CAGGTCCAATGTCTTCGTCTC 58.388 52.381 0.00 0.00 0.00 3.36
1072 1513 3.431725 CCGCCCGCTTCTTGAACC 61.432 66.667 0.00 0.00 0.00 3.62
1074 1515 1.966451 CGCCCGCTTCTTGAACCTT 60.966 57.895 0.00 0.00 0.00 3.50
1112 1564 0.108424 CACTCTTCTTCTCCGGCTGG 60.108 60.000 4.71 4.71 0.00 4.85
1116 1568 1.595993 CTTCTTCTCCGGCTGGTCGA 61.596 60.000 12.43 6.85 36.30 4.20
1131 1583 4.363138 CTGGTCGATCGATTGATTCTTGA 58.637 43.478 22.50 0.00 34.09 3.02
1135 1587 5.277825 GTCGATCGATTGATTCTTGAGTCT 58.722 41.667 22.50 0.00 34.09 3.24
1191 1647 2.600731 GATCGATCGATCCATGTGGTC 58.399 52.381 36.97 17.99 43.71 4.02
1211 1667 3.095332 TCTCTGTCTCCTGGAATGACTG 58.905 50.000 14.83 14.12 0.00 3.51
1224 1680 5.188434 TGGAATGACTGATCCATGTTCTTC 58.812 41.667 0.00 0.00 40.74 2.87
1234 1690 0.957395 CATGTTCTTCCCGCTGCAGT 60.957 55.000 16.64 0.00 0.00 4.40
1235 1691 0.250901 ATGTTCTTCCCGCTGCAGTT 60.251 50.000 16.64 0.00 0.00 3.16
1236 1692 1.165907 TGTTCTTCCCGCTGCAGTTG 61.166 55.000 16.64 8.37 0.00 3.16
1304 1769 0.106708 TGAAGAACTGCGGCTGAACT 59.893 50.000 14.07 8.88 0.00 3.01
1305 1770 1.230324 GAAGAACTGCGGCTGAACTT 58.770 50.000 14.07 15.76 0.00 2.66
1312 1777 0.320421 TGCGGCTGAACTTGAGGTAC 60.320 55.000 0.00 0.00 0.00 3.34
1314 1779 1.608283 GCGGCTGAACTTGAGGTACTT 60.608 52.381 0.00 0.00 41.55 2.24
1315 1780 2.069273 CGGCTGAACTTGAGGTACTTG 58.931 52.381 0.00 0.00 41.55 3.16
1316 1781 2.548067 CGGCTGAACTTGAGGTACTTGT 60.548 50.000 0.00 0.00 41.55 3.16
1318 1783 3.883489 GGCTGAACTTGAGGTACTTGTTT 59.117 43.478 0.00 0.00 41.55 2.83
1319 1784 4.023963 GGCTGAACTTGAGGTACTTGTTTC 60.024 45.833 0.00 0.00 41.55 2.78
1321 1786 5.297029 GCTGAACTTGAGGTACTTGTTTCTT 59.703 40.000 0.00 0.00 41.55 2.52
1322 1787 6.677781 TGAACTTGAGGTACTTGTTTCTTG 57.322 37.500 0.00 0.00 41.55 3.02
1324 1789 6.657541 TGAACTTGAGGTACTTGTTTCTTGTT 59.342 34.615 0.00 0.00 41.55 2.83
1325 1790 7.175990 TGAACTTGAGGTACTTGTTTCTTGTTT 59.824 33.333 0.00 0.00 41.55 2.83
1326 1791 8.570068 AACTTGAGGTACTTGTTTCTTGTTTA 57.430 30.769 0.00 0.00 41.55 2.01
1328 1793 8.456471 ACTTGAGGTACTTGTTTCTTGTTTAAC 58.544 33.333 0.00 0.00 41.55 2.01
1329 1794 7.007313 TGAGGTACTTGTTTCTTGTTTAACG 57.993 36.000 0.00 0.00 41.55 3.18
1330 1795 6.817641 TGAGGTACTTGTTTCTTGTTTAACGA 59.182 34.615 0.00 0.00 41.55 3.85
1331 1796 7.333921 TGAGGTACTTGTTTCTTGTTTAACGAA 59.666 33.333 0.00 0.00 41.55 3.85
1332 1797 8.217131 AGGTACTTGTTTCTTGTTTAACGAAT 57.783 30.769 0.00 0.00 27.25 3.34
1334 1799 9.292846 GGTACTTGTTTCTTGTTTAACGAATTT 57.707 29.630 0.00 0.00 0.00 1.82
1336 1801 8.751302 ACTTGTTTCTTGTTTAACGAATTTGT 57.249 26.923 0.00 0.00 0.00 2.83
1337 1802 9.198837 ACTTGTTTCTTGTTTAACGAATTTGTT 57.801 25.926 15.34 15.34 35.86 2.83
1338 1803 9.459276 CTTGTTTCTTGTTTAACGAATTTGTTG 57.541 29.630 19.51 3.57 33.32 3.33
1341 1806 8.813282 GTTTCTTGTTTAACGAATTTGTTGGAT 58.187 29.630 19.51 0.00 33.32 3.41
1345 1848 6.806751 TGTTTAACGAATTTGTTGGATTGGA 58.193 32.000 19.51 0.00 33.32 3.53
1347 1850 7.928706 TGTTTAACGAATTTGTTGGATTGGATT 59.071 29.630 19.51 0.00 33.32 3.01
1353 1856 6.594937 CGAATTTGTTGGATTGGATTGGATTT 59.405 34.615 0.00 0.00 0.00 2.17
1355 1858 9.101655 GAATTTGTTGGATTGGATTGGATTTAG 57.898 33.333 0.00 0.00 0.00 1.85
1360 1863 3.004734 GGATTGGATTGGATTTAGTGCCG 59.995 47.826 0.00 0.00 0.00 5.69
1375 1878 4.708968 CCGCCGAGATCGCCTAGC 62.709 72.222 0.00 0.00 38.18 3.42
1394 1905 1.516821 CTGTCTCTGCTCTGCTCGC 60.517 63.158 0.00 0.00 0.00 5.03
1398 1909 4.488992 TCTGCTCTGCTCGCGCTC 62.489 66.667 5.56 0.00 36.97 5.03
1402 1913 4.767841 CTCTGCTCGCGCTCGTGT 62.768 66.667 5.56 0.00 36.97 4.49
1410 1921 3.269347 GCGCTCGTGTTGGTGTGT 61.269 61.111 0.00 0.00 0.00 3.72
1411 1922 2.928361 CGCTCGTGTTGGTGTGTC 59.072 61.111 0.00 0.00 0.00 3.67
1464 1987 1.524849 GCCCCCTCTCGCTTGAATC 60.525 63.158 0.00 0.00 0.00 2.52
1468 1991 2.224161 CCCCCTCTCGCTTGAATCTTAG 60.224 54.545 0.00 0.00 0.00 2.18
1495 2018 3.757248 GATCCCCGCACGCAGGAAT 62.757 63.158 4.46 0.00 32.26 3.01
1498 2021 2.745884 CCCGCACGCAGGAATTGA 60.746 61.111 2.15 0.00 0.00 2.57
1526 2049 1.080298 GCTTGTTCATGCAGGTGGC 60.080 57.895 0.00 0.00 45.13 5.01
1527 2050 1.530013 GCTTGTTCATGCAGGTGGCT 61.530 55.000 0.00 0.00 45.15 4.75
1528 2051 0.963962 CTTGTTCATGCAGGTGGCTT 59.036 50.000 0.00 0.00 45.15 4.35
1563 2086 3.195698 GATGCCGCCGACCTTGAC 61.196 66.667 0.00 0.00 0.00 3.18
1777 2308 2.824041 CGACTTGGCCCAATCCGG 60.824 66.667 0.00 0.00 0.00 5.14
1825 2356 3.790437 CTGGACTGGATGGCGCCT 61.790 66.667 29.70 13.55 0.00 5.52
2299 2843 4.052229 CTCCGCGTCAAGGTCCGT 62.052 66.667 4.92 0.00 0.00 4.69
2596 3140 1.134610 GTCGTTATTGGGGTGGACGAT 60.135 52.381 0.12 0.00 43.46 3.73
2598 3142 1.021968 GTTATTGGGGTGGACGATGC 58.978 55.000 0.00 0.00 0.00 3.91
3214 3758 2.345244 CCGTTCCAGCTGCACTCT 59.655 61.111 8.66 0.00 0.00 3.24
3307 3851 2.665185 AACACGCTGCCGAACCTC 60.665 61.111 0.00 0.00 38.29 3.85
3376 3920 1.162800 GCAACCTCATCAGCCGGATC 61.163 60.000 5.05 0.00 32.57 3.36
3466 4010 1.649271 GGGATCCATGGAGGCCAAGT 61.649 60.000 28.27 9.71 36.95 3.16
4002 4575 2.815647 GTTTCCTCGCTGCCCTCG 60.816 66.667 0.00 0.00 0.00 4.63
4085 4658 2.278206 CGAGATGACGCGGGTGAG 60.278 66.667 10.96 0.00 35.82 3.51
4120 4693 2.646175 GCGAGGGTCCAGCAGTACA 61.646 63.158 0.00 0.00 0.00 2.90
4155 4728 1.018752 CGTTCGTGATGGCCATGACA 61.019 55.000 30.91 18.32 40.30 3.58
4168 4741 1.134580 CCATGACATCGGAGCAGAACT 60.135 52.381 0.00 0.00 0.00 3.01
4185 4758 3.288308 CTCGTGGGAGAAGTGCGCT 62.288 63.158 9.73 0.00 43.27 5.92
4278 4851 0.173255 TTCAGAGCGCATGATGTCGA 59.827 50.000 11.47 0.00 0.00 4.20
4289 4862 0.037790 TGATGTCGATGTGGTTCGCA 60.038 50.000 0.00 0.00 38.97 5.10
4351 4924 2.969238 CTGCCATCGATCACCGGC 60.969 66.667 15.67 15.67 45.11 6.13
4392 4965 5.385617 CGATGTCCTTGTGAAATCTTTGAC 58.614 41.667 0.00 0.00 35.79 3.18
4560 5141 0.118346 TTACAAGAGGGGGAGGAGCA 59.882 55.000 0.00 0.00 0.00 4.26
4577 5161 4.041815 AGGAGCATTGCTGATGATGATACT 59.958 41.667 17.51 0.00 39.88 2.12
4600 5184 8.316497 ACTTTGATTCTTGATAGAGATCCAGA 57.684 34.615 0.00 0.00 33.21 3.86
4810 5395 6.392354 ACATTTTGTATTCAGGCATGTTCAG 58.608 36.000 0.00 0.00 0.00 3.02
4962 5548 5.948842 AGGGTGGAGTAGTAAACAAATGTT 58.051 37.500 0.00 0.00 40.50 2.71
5014 5600 2.234908 AGGCAGATCTTGTGGTGTCTAC 59.765 50.000 0.00 0.00 0.00 2.59
5042 5628 7.332926 AGCATCAGAATTATACCAAGATTAGCG 59.667 37.037 0.00 0.00 0.00 4.26
5053 5639 4.102524 ACCAAGATTAGCGGATGGTGAATA 59.897 41.667 0.00 0.00 42.57 1.75
5148 5734 5.913137 TTCCTTTTGCTGAAGTTCAAAGA 57.087 34.783 14.07 0.00 34.21 2.52
5208 5819 1.924524 CGATAATGCCTGAACGTTCGT 59.075 47.619 22.48 6.71 0.00 3.85
5210 5821 1.717194 TAATGCCTGAACGTTCGTCC 58.283 50.000 22.48 13.16 0.00 4.79
5219 5830 2.865551 TGAACGTTCGTCCTTTTACCAC 59.134 45.455 22.48 0.00 0.00 4.16
5224 5835 2.163818 TCGTCCTTTTACCACTGCAG 57.836 50.000 13.48 13.48 0.00 4.41
5228 5839 2.673368 GTCCTTTTACCACTGCAGATCG 59.327 50.000 23.35 9.30 0.00 3.69
5237 5848 2.032030 CCACTGCAGATCGAACGTTTTT 60.032 45.455 23.35 0.00 0.00 1.94
5268 5879 3.853831 TTTTAGTGACGCGTAGATGGA 57.146 42.857 13.97 0.00 0.00 3.41
5271 5882 2.279582 AGTGACGCGTAGATGGAAAG 57.720 50.000 13.97 0.00 0.00 2.62
5283 5896 6.401153 GCGTAGATGGAAAGTTTAGTTGACAG 60.401 42.308 0.00 0.00 0.00 3.51
5284 5897 6.090898 CGTAGATGGAAAGTTTAGTTGACAGG 59.909 42.308 0.00 0.00 0.00 4.00
5330 5943 1.224965 TTTTGCCAGAAAATTGCCGC 58.775 45.000 0.00 0.00 0.00 6.53
5333 5946 2.257980 CCAGAAAATTGCCGCGCA 59.742 55.556 8.75 0.00 36.47 6.09
5346 5959 0.179200 CCGCGCATGTCAACTAAACC 60.179 55.000 8.75 0.00 0.00 3.27
5355 5968 2.092323 GTCAACTAAACCTGCCATCCC 58.908 52.381 0.00 0.00 0.00 3.85
5365 5978 2.109181 GCCATCCCTAGCGTCACC 59.891 66.667 0.00 0.00 0.00 4.02
5372 5985 1.276989 TCCCTAGCGTCACCGAAATTT 59.723 47.619 0.00 0.00 35.63 1.82
5375 5988 2.739913 CCTAGCGTCACCGAAATTTTCA 59.260 45.455 9.66 0.00 35.63 2.69
5383 5996 5.567534 CGTCACCGAAATTTTCATCGAAAAT 59.432 36.000 9.66 8.52 43.55 1.82
5415 6028 2.733026 CCGTCGTCAAATCCTAAACGTT 59.267 45.455 0.00 0.00 36.55 3.99
5458 6072 7.967854 CGTAATAAAAATGGTTGCTGAAGATGA 59.032 33.333 0.00 0.00 0.00 2.92
5471 6085 5.045651 TGCTGAAGATGAGGTCCAGAAATTA 60.046 40.000 0.00 0.00 0.00 1.40
5540 6180 6.920758 AGAAGAAAGATATGATGCACGTAGAC 59.079 38.462 0.00 0.00 0.00 2.59
5568 6208 4.944619 TGTGGAGTCTATTAGCATCAGG 57.055 45.455 0.00 0.00 0.00 3.86
5652 6303 2.464157 GGTGGTTGACCTGAGAAGAG 57.536 55.000 1.34 0.00 42.25 2.85
5653 6304 1.694696 GGTGGTTGACCTGAGAAGAGT 59.305 52.381 1.34 0.00 42.25 3.24
5654 6305 2.548920 GGTGGTTGACCTGAGAAGAGTG 60.549 54.545 1.34 0.00 42.25 3.51
5655 6306 1.694150 TGGTTGACCTGAGAAGAGTGG 59.306 52.381 1.34 0.00 36.82 4.00
5656 6307 1.971357 GGTTGACCTGAGAAGAGTGGA 59.029 52.381 0.00 0.00 0.00 4.02
5657 6308 2.028567 GGTTGACCTGAGAAGAGTGGAG 60.029 54.545 0.00 0.00 0.00 3.86
5658 6309 1.930251 TGACCTGAGAAGAGTGGAGG 58.070 55.000 0.00 0.00 0.00 4.30
5659 6310 1.190643 GACCTGAGAAGAGTGGAGGG 58.809 60.000 0.00 0.00 0.00 4.30
5782 6433 3.295785 CGCATCATCCGATCGAGATATC 58.704 50.000 18.66 10.45 0.00 1.63
5783 6434 3.295785 GCATCATCCGATCGAGATATCG 58.704 50.000 18.66 2.64 46.51 2.92
5817 6468 9.825972 AATAATATCAACGATATTTCCTTTGCG 57.174 29.630 12.99 0.00 40.89 4.85
5818 6469 7.490962 AATATCAACGATATTTCCTTTGCGA 57.509 32.000 3.85 0.00 40.89 5.10
5819 6470 5.811399 ATCAACGATATTTCCTTTGCGAA 57.189 34.783 0.00 0.00 0.00 4.70
5820 6471 5.614923 TCAACGATATTTCCTTTGCGAAA 57.385 34.783 0.00 0.00 36.24 3.46
5821 6472 6.003234 TCAACGATATTTCCTTTGCGAAAA 57.997 33.333 0.00 0.00 35.47 2.29
5822 6473 5.854338 TCAACGATATTTCCTTTGCGAAAAC 59.146 36.000 0.00 0.00 35.47 2.43
5823 6474 5.365403 ACGATATTTCCTTTGCGAAAACA 57.635 34.783 0.00 0.00 35.47 2.83
5824 6475 5.764131 ACGATATTTCCTTTGCGAAAACAA 58.236 33.333 0.00 0.00 35.47 2.83
5825 6476 6.386654 ACGATATTTCCTTTGCGAAAACAAT 58.613 32.000 0.00 0.00 35.47 2.71
5826 6477 7.531716 ACGATATTTCCTTTGCGAAAACAATA 58.468 30.769 0.00 0.00 35.47 1.90
5827 6478 7.696453 ACGATATTTCCTTTGCGAAAACAATAG 59.304 33.333 0.00 0.00 35.47 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.681152 AAATCGACTCAAAACACCGC 57.319 45.000 0.00 0.00 0.00 5.68
22 23 2.649531 ATGACTCCGACCAACCAAAA 57.350 45.000 0.00 0.00 0.00 2.44
23 24 3.008594 ACATATGACTCCGACCAACCAAA 59.991 43.478 10.38 0.00 0.00 3.28
24 25 2.569853 ACATATGACTCCGACCAACCAA 59.430 45.455 10.38 0.00 0.00 3.67
25 26 2.093711 CACATATGACTCCGACCAACCA 60.094 50.000 10.38 0.00 0.00 3.67
27 28 2.550978 CCACATATGACTCCGACCAAC 58.449 52.381 10.38 0.00 0.00 3.77
28 29 1.134521 GCCACATATGACTCCGACCAA 60.135 52.381 10.38 0.00 0.00 3.67
29 30 0.464036 GCCACATATGACTCCGACCA 59.536 55.000 10.38 0.00 0.00 4.02
30 31 0.464036 TGCCACATATGACTCCGACC 59.536 55.000 10.38 0.00 0.00 4.79
31 32 1.858091 CTGCCACATATGACTCCGAC 58.142 55.000 10.38 0.00 0.00 4.79
32 33 0.104855 GCTGCCACATATGACTCCGA 59.895 55.000 10.38 0.00 0.00 4.55
33 34 1.217585 CGCTGCCACATATGACTCCG 61.218 60.000 10.38 0.71 0.00 4.63
34 35 0.882042 CCGCTGCCACATATGACTCC 60.882 60.000 10.38 0.00 0.00 3.85
35 36 0.179073 ACCGCTGCCACATATGACTC 60.179 55.000 10.38 0.00 0.00 3.36
36 37 0.179073 GACCGCTGCCACATATGACT 60.179 55.000 10.38 0.00 0.00 3.41
37 38 1.160329 GGACCGCTGCCACATATGAC 61.160 60.000 10.38 0.00 0.00 3.06
38 39 1.146041 GGACCGCTGCCACATATGA 59.854 57.895 10.38 0.00 0.00 2.15
39 40 2.246739 CGGACCGCTGCCACATATG 61.247 63.158 0.00 0.00 0.00 1.78
40 41 1.396607 TACGGACCGCTGCCACATAT 61.397 55.000 15.39 0.00 0.00 1.78
73 74 5.220854 GCAGAACAACAGAAGCAAACTAAGA 60.221 40.000 0.00 0.00 0.00 2.10
84 85 2.045561 TTTCCCGCAGAACAACAGAA 57.954 45.000 0.00 0.00 32.95 3.02
85 86 2.045561 TTTTCCCGCAGAACAACAGA 57.954 45.000 0.00 0.00 32.95 3.41
86 87 2.607771 CCATTTTCCCGCAGAACAACAG 60.608 50.000 0.00 0.00 32.95 3.16
87 88 1.339610 CCATTTTCCCGCAGAACAACA 59.660 47.619 0.00 0.00 32.95 3.33
88 89 1.611491 TCCATTTTCCCGCAGAACAAC 59.389 47.619 0.00 0.00 32.95 3.32
89 90 1.611491 GTCCATTTTCCCGCAGAACAA 59.389 47.619 0.00 0.00 32.95 2.83
90 91 1.243902 GTCCATTTTCCCGCAGAACA 58.756 50.000 0.00 0.00 32.95 3.18
91 92 1.243902 TGTCCATTTTCCCGCAGAAC 58.756 50.000 0.00 0.00 32.95 3.01
92 93 1.988293 TTGTCCATTTTCCCGCAGAA 58.012 45.000 0.00 0.00 0.00 3.02
93 94 1.611491 GTTTGTCCATTTTCCCGCAGA 59.389 47.619 0.00 0.00 0.00 4.26
94 95 1.665735 CGTTTGTCCATTTTCCCGCAG 60.666 52.381 0.00 0.00 0.00 5.18
95 96 0.312416 CGTTTGTCCATTTTCCCGCA 59.688 50.000 0.00 0.00 0.00 5.69
96 97 0.388006 CCGTTTGTCCATTTTCCCGC 60.388 55.000 0.00 0.00 0.00 6.13
97 98 1.199097 CTCCGTTTGTCCATTTTCCCG 59.801 52.381 0.00 0.00 0.00 5.14
98 99 2.228103 GACTCCGTTTGTCCATTTTCCC 59.772 50.000 0.00 0.00 0.00 3.97
99 100 3.554259 GACTCCGTTTGTCCATTTTCC 57.446 47.619 0.00 0.00 0.00 3.13
107 108 2.527100 CGTCTATGGACTCCGTTTGTC 58.473 52.381 7.68 0.00 40.10 3.18
108 109 1.403780 GCGTCTATGGACTCCGTTTGT 60.404 52.381 7.68 0.00 40.10 2.83
109 110 1.278238 GCGTCTATGGACTCCGTTTG 58.722 55.000 7.68 0.00 40.10 2.93
110 111 0.179145 CGCGTCTATGGACTCCGTTT 60.179 55.000 7.68 0.00 40.10 3.60
111 112 1.432251 CGCGTCTATGGACTCCGTT 59.568 57.895 7.68 0.00 40.10 4.44
112 113 2.478890 CCGCGTCTATGGACTCCGT 61.479 63.158 4.92 0.00 40.10 4.69
113 114 1.721664 TTCCGCGTCTATGGACTCCG 61.722 60.000 4.92 9.43 40.10 4.63
114 115 0.248949 GTTCCGCGTCTATGGACTCC 60.249 60.000 4.92 0.00 40.10 3.85
115 116 0.591741 CGTTCCGCGTCTATGGACTC 60.592 60.000 4.92 0.00 40.10 3.36
116 117 1.432251 CGTTCCGCGTCTATGGACT 59.568 57.895 4.92 0.00 40.10 3.85
117 118 1.588139 CCGTTCCGCGTCTATGGAC 60.588 63.158 4.92 0.00 39.32 4.02
118 119 2.802792 CCGTTCCGCGTCTATGGA 59.197 61.111 4.92 0.00 39.32 3.41
119 120 2.960129 GCCGTTCCGCGTCTATGG 60.960 66.667 4.92 5.79 39.32 2.74
127 128 4.160635 CATCCAACGCCGTTCCGC 62.161 66.667 0.00 0.00 0.00 5.54
128 129 2.433491 TCATCCAACGCCGTTCCG 60.433 61.111 0.00 0.00 0.00 4.30
129 130 1.231958 TTGTCATCCAACGCCGTTCC 61.232 55.000 0.00 0.00 0.00 3.62
130 131 0.589223 TTTGTCATCCAACGCCGTTC 59.411 50.000 0.00 0.00 31.20 3.95
131 132 0.591170 CTTTGTCATCCAACGCCGTT 59.409 50.000 0.00 0.00 31.20 4.44
132 133 1.852067 GCTTTGTCATCCAACGCCGT 61.852 55.000 0.00 0.00 41.21 5.68
133 134 1.154225 GCTTTGTCATCCAACGCCG 60.154 57.895 0.00 0.00 41.21 6.46
134 135 1.154225 CGCTTTGTCATCCAACGCC 60.154 57.895 0.00 0.00 43.41 5.68
135 136 1.797537 GCGCTTTGTCATCCAACGC 60.798 57.895 0.00 0.00 43.02 4.84
136 137 1.509787 CGCGCTTTGTCATCCAACG 60.510 57.895 5.56 0.00 31.20 4.10
137 138 0.452784 GACGCGCTTTGTCATCCAAC 60.453 55.000 5.73 0.00 36.37 3.77
138 139 0.602638 AGACGCGCTTTGTCATCCAA 60.603 50.000 5.73 0.00 38.83 3.53
139 140 0.245266 TAGACGCGCTTTGTCATCCA 59.755 50.000 5.73 0.00 38.83 3.41
140 141 0.924090 CTAGACGCGCTTTGTCATCC 59.076 55.000 5.73 0.00 38.83 3.51
141 142 1.584308 GTCTAGACGCGCTTTGTCATC 59.416 52.381 5.73 0.00 38.83 2.92
142 143 1.067846 TGTCTAGACGCGCTTTGTCAT 60.068 47.619 17.85 4.53 38.83 3.06
143 144 0.312729 TGTCTAGACGCGCTTTGTCA 59.687 50.000 17.85 0.00 38.83 3.58
144 145 1.415374 TTGTCTAGACGCGCTTTGTC 58.585 50.000 17.85 5.74 36.60 3.18
145 146 1.726791 CATTGTCTAGACGCGCTTTGT 59.273 47.619 17.85 0.00 0.00 2.83
146 147 1.527793 GCATTGTCTAGACGCGCTTTG 60.528 52.381 17.85 9.53 0.00 2.77
147 148 0.721718 GCATTGTCTAGACGCGCTTT 59.278 50.000 17.85 0.00 0.00 3.51
148 149 0.108615 AGCATTGTCTAGACGCGCTT 60.109 50.000 21.34 0.00 31.52 4.68
149 150 0.803768 CAGCATTGTCTAGACGCGCT 60.804 55.000 21.34 21.34 34.45 5.92
150 151 1.633171 CAGCATTGTCTAGACGCGC 59.367 57.895 17.85 18.12 0.00 6.86
151 152 1.078201 TGCAGCATTGTCTAGACGCG 61.078 55.000 17.85 3.53 0.00 6.01
152 153 1.004185 CATGCAGCATTGTCTAGACGC 60.004 52.381 17.85 14.64 0.00 5.19
153 154 2.274437 ACATGCAGCATTGTCTAGACG 58.726 47.619 17.85 5.21 0.00 4.18
154 155 3.243877 CGTACATGCAGCATTGTCTAGAC 59.756 47.826 16.32 16.32 0.00 2.59
155 156 3.119137 ACGTACATGCAGCATTGTCTAGA 60.119 43.478 4.69 0.00 0.00 2.43
156 157 3.190079 ACGTACATGCAGCATTGTCTAG 58.810 45.455 4.69 0.00 0.00 2.43
157 158 3.245518 ACGTACATGCAGCATTGTCTA 57.754 42.857 4.69 0.00 0.00 2.59
158 159 2.099141 ACGTACATGCAGCATTGTCT 57.901 45.000 4.69 0.00 0.00 3.41
159 160 3.865329 CATACGTACATGCAGCATTGTC 58.135 45.455 4.69 0.00 0.00 3.18
160 161 3.950087 CATACGTACATGCAGCATTGT 57.050 42.857 4.69 10.12 0.00 2.71
168 169 1.778334 TCATCCGCATACGTACATGC 58.222 50.000 12.37 12.37 46.38 4.06
169 170 4.990543 AAATCATCCGCATACGTACATG 57.009 40.909 0.00 0.00 37.70 3.21
170 171 5.637810 CCTTAAATCATCCGCATACGTACAT 59.362 40.000 0.00 0.00 37.70 2.29
171 172 4.986034 CCTTAAATCATCCGCATACGTACA 59.014 41.667 0.00 0.00 37.70 2.90
172 173 4.387862 CCCTTAAATCATCCGCATACGTAC 59.612 45.833 0.00 0.00 37.70 3.67
173 174 4.039488 ACCCTTAAATCATCCGCATACGTA 59.961 41.667 0.00 0.00 37.70 3.57
174 175 3.181458 ACCCTTAAATCATCCGCATACGT 60.181 43.478 0.00 0.00 37.70 3.57
175 176 3.399330 ACCCTTAAATCATCCGCATACG 58.601 45.455 0.00 0.00 39.67 3.06
176 177 3.432252 CGACCCTTAAATCATCCGCATAC 59.568 47.826 0.00 0.00 0.00 2.39
177 178 3.556213 CCGACCCTTAAATCATCCGCATA 60.556 47.826 0.00 0.00 0.00 3.14
178 179 2.494059 CGACCCTTAAATCATCCGCAT 58.506 47.619 0.00 0.00 0.00 4.73
179 180 1.474320 CCGACCCTTAAATCATCCGCA 60.474 52.381 0.00 0.00 0.00 5.69
180 181 1.226746 CCGACCCTTAAATCATCCGC 58.773 55.000 0.00 0.00 0.00 5.54
181 182 1.202651 AGCCGACCCTTAAATCATCCG 60.203 52.381 0.00 0.00 0.00 4.18
182 183 2.640316 AGCCGACCCTTAAATCATCC 57.360 50.000 0.00 0.00 0.00 3.51
183 184 3.945285 TGAAAGCCGACCCTTAAATCATC 59.055 43.478 0.00 0.00 0.00 2.92
184 185 3.963129 TGAAAGCCGACCCTTAAATCAT 58.037 40.909 0.00 0.00 0.00 2.45
185 186 3.426787 TGAAAGCCGACCCTTAAATCA 57.573 42.857 0.00 0.00 0.00 2.57
186 187 4.007659 TCTTGAAAGCCGACCCTTAAATC 58.992 43.478 0.00 0.00 0.00 2.17
187 188 4.028993 TCTTGAAAGCCGACCCTTAAAT 57.971 40.909 0.00 0.00 0.00 1.40
188 189 3.495434 TCTTGAAAGCCGACCCTTAAA 57.505 42.857 0.00 0.00 0.00 1.52
189 190 3.343617 CATCTTGAAAGCCGACCCTTAA 58.656 45.455 0.00 0.00 0.00 1.85
190 191 2.939640 GCATCTTGAAAGCCGACCCTTA 60.940 50.000 0.00 0.00 0.00 2.69
191 192 1.826385 CATCTTGAAAGCCGACCCTT 58.174 50.000 0.00 0.00 0.00 3.95
192 193 0.678048 GCATCTTGAAAGCCGACCCT 60.678 55.000 0.00 0.00 0.00 4.34
193 194 1.657751 GGCATCTTGAAAGCCGACCC 61.658 60.000 0.00 0.00 38.86 4.46
194 195 1.803289 GGCATCTTGAAAGCCGACC 59.197 57.895 0.00 0.00 38.86 4.79
199 200 8.028938 TGAAATAAGTAAAGGCATCTTGAAAGC 58.971 33.333 0.00 0.00 32.75 3.51
202 203 9.241919 TGATGAAATAAGTAAAGGCATCTTGAA 57.758 29.630 0.00 0.00 33.66 2.69
203 204 8.806429 TGATGAAATAAGTAAAGGCATCTTGA 57.194 30.769 0.00 0.00 33.66 3.02
206 207 8.562892 CGATTGATGAAATAAGTAAAGGCATCT 58.437 33.333 0.00 0.00 33.66 2.90
207 208 8.345565 ACGATTGATGAAATAAGTAAAGGCATC 58.654 33.333 0.00 0.00 33.24 3.91
208 209 8.131100 CACGATTGATGAAATAAGTAAAGGCAT 58.869 33.333 0.00 0.00 0.00 4.40
209 210 7.335673 TCACGATTGATGAAATAAGTAAAGGCA 59.664 33.333 0.00 0.00 0.00 4.75
210 211 7.693952 TCACGATTGATGAAATAAGTAAAGGC 58.306 34.615 0.00 0.00 0.00 4.35
216 217 9.357652 CCAAAAATCACGATTGATGAAATAAGT 57.642 29.630 0.00 0.00 42.00 2.24
217 218 9.571810 TCCAAAAATCACGATTGATGAAATAAG 57.428 29.630 0.00 0.00 42.00 1.73
218 219 9.920133 TTCCAAAAATCACGATTGATGAAATAA 57.080 25.926 0.00 0.00 42.00 1.40
219 220 9.920133 TTTCCAAAAATCACGATTGATGAAATA 57.080 25.926 0.00 0.00 42.00 1.40
220 221 8.830201 TTTCCAAAAATCACGATTGATGAAAT 57.170 26.923 0.00 0.00 42.00 2.17
221 222 8.140628 TCTTTCCAAAAATCACGATTGATGAAA 58.859 29.630 0.00 0.00 42.00 2.69
222 223 7.656412 TCTTTCCAAAAATCACGATTGATGAA 58.344 30.769 0.00 0.00 42.00 2.57
223 224 7.213216 TCTTTCCAAAAATCACGATTGATGA 57.787 32.000 0.00 0.00 42.00 2.92
224 225 7.756272 TCATCTTTCCAAAAATCACGATTGATG 59.244 33.333 0.00 0.00 42.00 3.07
225 226 7.756722 GTCATCTTTCCAAAAATCACGATTGAT 59.243 33.333 0.00 0.00 44.98 2.57
226 227 7.083858 GTCATCTTTCCAAAAATCACGATTGA 58.916 34.615 0.00 0.00 35.73 2.57
227 228 6.032775 CGTCATCTTTCCAAAAATCACGATTG 59.967 38.462 0.00 0.00 0.00 2.67
228 229 6.072728 TCGTCATCTTTCCAAAAATCACGATT 60.073 34.615 0.00 0.00 0.00 3.34
229 230 5.411361 TCGTCATCTTTCCAAAAATCACGAT 59.589 36.000 0.00 0.00 0.00 3.73
230 231 4.752604 TCGTCATCTTTCCAAAAATCACGA 59.247 37.500 0.00 0.00 0.00 4.35
231 232 5.029650 TCGTCATCTTTCCAAAAATCACG 57.970 39.130 0.00 0.00 0.00 4.35
232 233 5.287035 GCATCGTCATCTTTCCAAAAATCAC 59.713 40.000 0.00 0.00 0.00 3.06
233 234 5.401550 GCATCGTCATCTTTCCAAAAATCA 58.598 37.500 0.00 0.00 0.00 2.57
234 235 4.496895 CGCATCGTCATCTTTCCAAAAATC 59.503 41.667 0.00 0.00 0.00 2.17
235 236 4.082787 ACGCATCGTCATCTTTCCAAAAAT 60.083 37.500 0.00 0.00 33.69 1.82
236 237 3.252215 ACGCATCGTCATCTTTCCAAAAA 59.748 39.130 0.00 0.00 33.69 1.94
237 238 2.811431 ACGCATCGTCATCTTTCCAAAA 59.189 40.909 0.00 0.00 33.69 2.44
238 239 2.159430 CACGCATCGTCATCTTTCCAAA 59.841 45.455 0.00 0.00 38.32 3.28
239 240 1.731709 CACGCATCGTCATCTTTCCAA 59.268 47.619 0.00 0.00 38.32 3.53
240 241 1.337728 ACACGCATCGTCATCTTTCCA 60.338 47.619 0.00 0.00 38.32 3.53
241 242 1.359848 ACACGCATCGTCATCTTTCC 58.640 50.000 0.00 0.00 38.32 3.13
242 243 4.778842 AATACACGCATCGTCATCTTTC 57.221 40.909 0.00 0.00 38.32 2.62
243 244 6.478673 TGAATAATACACGCATCGTCATCTTT 59.521 34.615 0.00 0.00 38.32 2.52
244 245 5.983118 TGAATAATACACGCATCGTCATCTT 59.017 36.000 0.00 0.00 38.32 2.40
245 246 5.402568 GTGAATAATACACGCATCGTCATCT 59.597 40.000 0.00 0.00 38.32 2.90
246 247 5.388475 GGTGAATAATACACGCATCGTCATC 60.388 44.000 0.00 0.00 38.32 2.92
247 248 4.447724 GGTGAATAATACACGCATCGTCAT 59.552 41.667 0.00 0.00 38.32 3.06
248 249 3.799963 GGTGAATAATACACGCATCGTCA 59.200 43.478 0.00 0.00 38.32 4.35
249 250 3.799963 TGGTGAATAATACACGCATCGTC 59.200 43.478 0.00 0.00 38.32 4.20
250 251 3.787785 TGGTGAATAATACACGCATCGT 58.212 40.909 0.00 0.00 42.36 3.73
251 252 4.990543 ATGGTGAATAATACACGCATCG 57.009 40.909 0.00 0.00 38.90 3.84
252 253 6.017934 ACAGAATGGTGAATAATACACGCATC 60.018 38.462 0.00 0.00 43.62 3.91
253 254 5.822519 ACAGAATGGTGAATAATACACGCAT 59.177 36.000 0.00 0.00 43.62 4.73
254 255 5.182487 ACAGAATGGTGAATAATACACGCA 58.818 37.500 0.00 0.00 43.62 5.24
255 256 5.734855 ACAGAATGGTGAATAATACACGC 57.265 39.130 0.00 0.00 43.62 5.34
265 266 9.403583 GGGAGTAAATAATAACAGAATGGTGAA 57.596 33.333 0.00 0.00 35.42 3.18
266 267 8.778059 AGGGAGTAAATAATAACAGAATGGTGA 58.222 33.333 0.00 0.00 35.42 4.02
267 268 8.980481 AGGGAGTAAATAATAACAGAATGGTG 57.020 34.615 0.00 0.00 35.42 4.17
268 269 8.218488 GGAGGGAGTAAATAATAACAGAATGGT 58.782 37.037 0.00 0.00 43.62 3.55
269 270 7.387948 CGGAGGGAGTAAATAATAACAGAATGG 59.612 40.741 0.00 0.00 43.62 3.16
270 271 7.931948 ACGGAGGGAGTAAATAATAACAGAATG 59.068 37.037 0.00 0.00 46.00 2.67
271 272 8.030913 ACGGAGGGAGTAAATAATAACAGAAT 57.969 34.615 0.00 0.00 0.00 2.40
272 273 7.418254 GGACGGAGGGAGTAAATAATAACAGAA 60.418 40.741 0.00 0.00 0.00 3.02
273 274 6.041296 GGACGGAGGGAGTAAATAATAACAGA 59.959 42.308 0.00 0.00 0.00 3.41
274 275 6.221659 GGACGGAGGGAGTAAATAATAACAG 58.778 44.000 0.00 0.00 0.00 3.16
275 276 5.070847 GGGACGGAGGGAGTAAATAATAACA 59.929 44.000 0.00 0.00 0.00 2.41
276 277 5.070847 TGGGACGGAGGGAGTAAATAATAAC 59.929 44.000 0.00 0.00 0.00 1.89
277 278 5.218179 TGGGACGGAGGGAGTAAATAATAA 58.782 41.667 0.00 0.00 0.00 1.40
278 279 4.818447 TGGGACGGAGGGAGTAAATAATA 58.182 43.478 0.00 0.00 0.00 0.98
279 280 3.660959 TGGGACGGAGGGAGTAAATAAT 58.339 45.455 0.00 0.00 0.00 1.28
280 281 3.119009 TGGGACGGAGGGAGTAAATAA 57.881 47.619 0.00 0.00 0.00 1.40
281 282 2.852714 TGGGACGGAGGGAGTAAATA 57.147 50.000 0.00 0.00 0.00 1.40
282 283 1.961133 TTGGGACGGAGGGAGTAAAT 58.039 50.000 0.00 0.00 0.00 1.40
283 284 1.732117 TTTGGGACGGAGGGAGTAAA 58.268 50.000 0.00 0.00 0.00 2.01
284 285 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
285 286 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
286 287 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
287 288 4.699925 TTATATTTTGGGACGGAGGGAG 57.300 45.455 0.00 0.00 0.00 4.30
288 289 5.453866 TTTTATATTTTGGGACGGAGGGA 57.546 39.130 0.00 0.00 0.00 4.20
289 290 5.449451 CGTTTTTATATTTTGGGACGGAGGG 60.449 44.000 0.00 0.00 0.00 4.30
290 291 5.124297 ACGTTTTTATATTTTGGGACGGAGG 59.876 40.000 0.00 0.00 33.95 4.30
291 292 6.185852 ACGTTTTTATATTTTGGGACGGAG 57.814 37.500 0.00 0.00 33.95 4.63
292 293 6.572167 AACGTTTTTATATTTTGGGACGGA 57.428 33.333 0.00 0.00 33.95 4.69
293 294 7.640616 AAAACGTTTTTATATTTTGGGACGG 57.359 32.000 20.26 0.00 33.95 4.79
315 316 8.893219 TTTTGACACCATGCATAATGTAAAAA 57.107 26.923 22.53 22.53 34.46 1.94
316 317 8.768955 GTTTTTGACACCATGCATAATGTAAAA 58.231 29.630 16.12 16.12 34.11 1.52
317 318 7.115520 CGTTTTTGACACCATGCATAATGTAAA 59.884 33.333 13.47 10.54 34.11 2.01
318 319 6.584184 CGTTTTTGACACCATGCATAATGTAA 59.416 34.615 13.47 5.42 34.11 2.41
319 320 6.089476 CGTTTTTGACACCATGCATAATGTA 58.911 36.000 13.47 0.00 34.11 2.29
320 321 4.922692 CGTTTTTGACACCATGCATAATGT 59.077 37.500 13.39 13.39 34.11 2.71
321 322 4.922692 ACGTTTTTGACACCATGCATAATG 59.077 37.500 0.00 3.07 35.89 1.90
322 323 5.132897 ACGTTTTTGACACCATGCATAAT 57.867 34.783 0.00 0.00 0.00 1.28
323 324 4.576216 ACGTTTTTGACACCATGCATAA 57.424 36.364 0.00 0.00 0.00 1.90
324 325 4.277174 AGAACGTTTTTGACACCATGCATA 59.723 37.500 0.46 0.00 0.00 3.14
325 326 3.068024 AGAACGTTTTTGACACCATGCAT 59.932 39.130 0.46 0.00 0.00 3.96
326 327 2.425312 AGAACGTTTTTGACACCATGCA 59.575 40.909 0.46 0.00 0.00 3.96
327 328 3.078594 AGAACGTTTTTGACACCATGC 57.921 42.857 0.46 0.00 0.00 4.06
328 329 8.450964 AGATATAAGAACGTTTTTGACACCATG 58.549 33.333 13.87 0.00 0.00 3.66
329 330 8.561738 AGATATAAGAACGTTTTTGACACCAT 57.438 30.769 13.87 1.56 0.00 3.55
330 331 7.972832 AGATATAAGAACGTTTTTGACACCA 57.027 32.000 13.87 0.00 0.00 4.17
331 332 7.749126 CCAAGATATAAGAACGTTTTTGACACC 59.251 37.037 13.87 0.74 0.00 4.16
332 333 7.749126 CCCAAGATATAAGAACGTTTTTGACAC 59.251 37.037 13.87 4.05 0.00 3.67
333 334 7.662258 TCCCAAGATATAAGAACGTTTTTGACA 59.338 33.333 13.87 0.01 0.00 3.58
334 335 7.961283 GTCCCAAGATATAAGAACGTTTTTGAC 59.039 37.037 13.87 5.89 0.00 3.18
335 336 7.148540 CGTCCCAAGATATAAGAACGTTTTTGA 60.149 37.037 13.87 2.81 0.00 2.69
336 337 6.959311 CGTCCCAAGATATAAGAACGTTTTTG 59.041 38.462 13.87 0.00 0.00 2.44
337 338 6.093082 CCGTCCCAAGATATAAGAACGTTTTT 59.907 38.462 9.22 9.22 0.00 1.94
338 339 5.583457 CCGTCCCAAGATATAAGAACGTTTT 59.417 40.000 0.46 0.00 0.00 2.43
339 340 5.105228 TCCGTCCCAAGATATAAGAACGTTT 60.105 40.000 0.46 0.00 0.00 3.60
340 341 4.403432 TCCGTCCCAAGATATAAGAACGTT 59.597 41.667 0.00 0.00 0.00 3.99
341 342 3.956199 TCCGTCCCAAGATATAAGAACGT 59.044 43.478 0.00 0.00 0.00 3.99
342 343 4.547532 CTCCGTCCCAAGATATAAGAACG 58.452 47.826 0.00 0.00 0.00 3.95
343 344 4.262506 CCCTCCGTCCCAAGATATAAGAAC 60.263 50.000 0.00 0.00 0.00 3.01
344 345 3.901844 CCCTCCGTCCCAAGATATAAGAA 59.098 47.826 0.00 0.00 0.00 2.52
345 346 3.141460 TCCCTCCGTCCCAAGATATAAGA 59.859 47.826 0.00 0.00 0.00 2.10
346 347 3.507411 TCCCTCCGTCCCAAGATATAAG 58.493 50.000 0.00 0.00 0.00 1.73
347 348 3.116862 ACTCCCTCCGTCCCAAGATATAA 60.117 47.826 0.00 0.00 0.00 0.98
348 349 2.449730 ACTCCCTCCGTCCCAAGATATA 59.550 50.000 0.00 0.00 0.00 0.86
349 350 1.220750 ACTCCCTCCGTCCCAAGATAT 59.779 52.381 0.00 0.00 0.00 1.63
350 351 0.635009 ACTCCCTCCGTCCCAAGATA 59.365 55.000 0.00 0.00 0.00 1.98
351 352 0.635009 TACTCCCTCCGTCCCAAGAT 59.365 55.000 0.00 0.00 0.00 2.40
352 353 0.410663 TTACTCCCTCCGTCCCAAGA 59.589 55.000 0.00 0.00 0.00 3.02
353 354 1.497161 ATTACTCCCTCCGTCCCAAG 58.503 55.000 0.00 0.00 0.00 3.61
354 355 2.674420 CTATTACTCCCTCCGTCCCAA 58.326 52.381 0.00 0.00 0.00 4.12
355 356 1.756690 GCTATTACTCCCTCCGTCCCA 60.757 57.143 0.00 0.00 0.00 4.37
356 357 0.967662 GCTATTACTCCCTCCGTCCC 59.032 60.000 0.00 0.00 0.00 4.46
357 358 1.998222 AGCTATTACTCCCTCCGTCC 58.002 55.000 0.00 0.00 0.00 4.79
358 359 3.887716 TGTAAGCTATTACTCCCTCCGTC 59.112 47.826 0.00 0.00 41.63 4.79
359 360 3.907221 TGTAAGCTATTACTCCCTCCGT 58.093 45.455 0.00 0.00 41.63 4.69
360 361 4.767928 AGATGTAAGCTATTACTCCCTCCG 59.232 45.833 0.00 0.00 41.63 4.63
361 362 6.673839 AAGATGTAAGCTATTACTCCCTCC 57.326 41.667 0.00 0.00 41.63 4.30
362 363 8.862085 AGTAAAGATGTAAGCTATTACTCCCTC 58.138 37.037 0.00 0.00 41.63 4.30
363 364 8.785184 AGTAAAGATGTAAGCTATTACTCCCT 57.215 34.615 0.00 0.00 41.63 4.20
364 365 9.262358 CAAGTAAAGATGTAAGCTATTACTCCC 57.738 37.037 0.00 0.00 41.63 4.30
365 366 9.262358 CCAAGTAAAGATGTAAGCTATTACTCC 57.738 37.037 0.00 0.00 41.63 3.85
366 367 9.819267 ACCAAGTAAAGATGTAAGCTATTACTC 57.181 33.333 0.00 0.00 41.63 2.59
370 371 9.515226 TGAAACCAAGTAAAGATGTAAGCTATT 57.485 29.630 0.00 0.00 0.00 1.73
382 383 7.693969 ATTCTGAGGATGAAACCAAGTAAAG 57.306 36.000 0.00 0.00 0.00 1.85
388 389 4.588106 TGCAAATTCTGAGGATGAAACCAA 59.412 37.500 0.00 0.00 0.00 3.67
390 391 4.022068 TGTGCAAATTCTGAGGATGAAACC 60.022 41.667 0.00 0.00 0.00 3.27
391 392 5.125100 TGTGCAAATTCTGAGGATGAAAC 57.875 39.130 0.00 0.00 0.00 2.78
436 437 9.807649 AAAATGTCAGAAAGAATTATACATGGC 57.192 29.630 0.00 0.00 0.00 4.40
489 490 8.535335 TGCATTGGAGCACCTTATTTTAAATAA 58.465 29.630 9.43 9.43 40.11 1.40
594 600 3.081409 CACGGGTGGAGTAGGGGG 61.081 72.222 0.00 0.00 0.00 5.40
595 601 3.782443 GCACGGGTGGAGTAGGGG 61.782 72.222 0.43 0.00 0.00 4.79
599 605 2.280552 GGTGAGCACGGGTGGAGTA 61.281 63.158 0.43 0.00 0.00 2.59
665 675 0.038744 CCTGGCAGATGGTCCAAGTT 59.961 55.000 17.94 0.00 30.98 2.66
695 705 4.008933 GCGGTGGAGCTGTGAGGT 62.009 66.667 0.00 0.00 0.00 3.85
753 773 2.351738 GCACGAAAGACATTGAAAGGGG 60.352 50.000 0.00 0.00 0.00 4.79
761 781 1.076332 GTAGCCGCACGAAAGACATT 58.924 50.000 0.00 0.00 0.00 2.71
762 782 0.037697 TGTAGCCGCACGAAAGACAT 60.038 50.000 0.00 0.00 0.00 3.06
816 836 4.135153 AGCCAGTAGCCAGACGCG 62.135 66.667 3.53 3.53 45.47 6.01
817 837 2.510238 CAGCCAGTAGCCAGACGC 60.510 66.667 0.00 0.00 45.47 5.19
818 838 2.185350 CCAGCCAGTAGCCAGACG 59.815 66.667 0.00 0.00 45.47 4.18
819 839 2.124942 GCCAGCCAGTAGCCAGAC 60.125 66.667 0.00 0.00 45.47 3.51
820 840 2.284921 AGCCAGCCAGTAGCCAGA 60.285 61.111 0.00 0.00 45.47 3.86
821 841 2.124819 CAGCCAGCCAGTAGCCAG 60.125 66.667 0.00 0.00 45.47 4.85
822 842 3.720601 CCAGCCAGCCAGTAGCCA 61.721 66.667 0.00 0.00 45.47 4.75
824 844 4.106925 AGCCAGCCAGCCAGTAGC 62.107 66.667 0.00 0.00 44.25 3.58
825 845 1.980784 ATCAGCCAGCCAGCCAGTAG 61.981 60.000 0.00 0.00 0.00 2.57
826 846 1.565390 AATCAGCCAGCCAGCCAGTA 61.565 55.000 0.00 0.00 0.00 2.74
827 847 2.436596 AAATCAGCCAGCCAGCCAGT 62.437 55.000 0.00 0.00 0.00 4.00
828 848 1.681327 AAATCAGCCAGCCAGCCAG 60.681 57.895 0.00 0.00 0.00 4.85
829 849 1.980232 CAAATCAGCCAGCCAGCCA 60.980 57.895 0.00 0.00 0.00 4.75
830 850 1.041447 ATCAAATCAGCCAGCCAGCC 61.041 55.000 0.00 0.00 0.00 4.85
831 851 0.384669 GATCAAATCAGCCAGCCAGC 59.615 55.000 0.00 0.00 0.00 4.85
832 852 1.676529 CAGATCAAATCAGCCAGCCAG 59.323 52.381 0.00 0.00 0.00 4.85
833 853 1.282738 TCAGATCAAATCAGCCAGCCA 59.717 47.619 0.00 0.00 0.00 4.75
834 854 2.048444 TCAGATCAAATCAGCCAGCC 57.952 50.000 0.00 0.00 0.00 4.85
835 855 4.820716 ACTAATCAGATCAAATCAGCCAGC 59.179 41.667 0.00 0.00 0.00 4.85
836 856 6.238676 CCAACTAATCAGATCAAATCAGCCAG 60.239 42.308 0.00 0.00 0.00 4.85
837 857 5.591472 CCAACTAATCAGATCAAATCAGCCA 59.409 40.000 0.00 0.00 0.00 4.75
950 984 1.842381 GACCTGGACCTGGACTTGGG 61.842 65.000 23.36 1.11 0.00 4.12
956 990 0.475632 ACATTGGACCTGGACCTGGA 60.476 55.000 23.36 1.67 0.00 3.86
1054 1097 4.103103 GTTCAAGAAGCGGGCGGC 62.103 66.667 9.26 9.26 44.05 6.53
1055 1098 3.431725 GGTTCAAGAAGCGGGCGG 61.432 66.667 0.00 0.00 0.00 6.13
1056 1099 1.515521 AAAGGTTCAAGAAGCGGGCG 61.516 55.000 6.38 0.00 43.06 6.13
1057 1100 0.673985 AAAAGGTTCAAGAAGCGGGC 59.326 50.000 6.38 0.00 43.06 6.13
1058 1101 2.226674 GAGAAAAGGTTCAAGAAGCGGG 59.773 50.000 6.38 0.00 43.06 6.13
1059 1102 2.878406 TGAGAAAAGGTTCAAGAAGCGG 59.122 45.455 6.38 0.00 43.06 5.52
1068 1509 2.096565 GCGTACCGTTGAGAAAAGGTTC 60.097 50.000 1.48 0.00 38.12 3.62
1072 1513 0.179258 GCGCGTACCGTTGAGAAAAG 60.179 55.000 8.43 0.00 39.71 2.27
1074 1515 2.023223 GGCGCGTACCGTTGAGAAA 61.023 57.895 8.43 0.00 39.71 2.52
1093 1534 0.108424 CCAGCCGGAGAAGAAGAGTG 60.108 60.000 5.05 0.00 0.00 3.51
1094 1535 0.543174 ACCAGCCGGAGAAGAAGAGT 60.543 55.000 5.05 0.00 35.59 3.24
1112 1564 5.172951 CAGACTCAAGAATCAATCGATCGAC 59.827 44.000 22.06 6.49 0.00 4.20
1116 1568 5.355596 GGACAGACTCAAGAATCAATCGAT 58.644 41.667 0.00 0.00 0.00 3.59
1131 1583 3.054503 CGGACGGACGGACAGACT 61.055 66.667 0.00 0.00 0.00 3.24
1191 1647 3.095332 TCAGTCATTCCAGGAGACAGAG 58.905 50.000 10.70 2.03 34.80 3.35
1211 1667 1.303309 CAGCGGGAAGAACATGGATC 58.697 55.000 0.00 0.00 0.00 3.36
1234 1690 0.319900 GAAGAGCGAGTCAGGTGCAA 60.320 55.000 0.00 0.00 0.00 4.08
1235 1691 1.181741 AGAAGAGCGAGTCAGGTGCA 61.182 55.000 0.00 0.00 0.00 4.57
1236 1692 0.457681 GAGAAGAGCGAGTCAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
1239 1695 1.813192 GGGAGAAGAGCGAGTCAGG 59.187 63.158 0.00 0.00 0.00 3.86
1242 1698 2.103340 GCGGGAGAAGAGCGAGTC 59.897 66.667 0.00 0.00 0.00 3.36
1304 1769 7.333921 TCGTTAAACAAGAAACAAGTACCTCAA 59.666 33.333 0.00 0.00 0.00 3.02
1305 1770 6.817641 TCGTTAAACAAGAAACAAGTACCTCA 59.182 34.615 0.00 0.00 0.00 3.86
1312 1777 9.459276 CAACAAATTCGTTAAACAAGAAACAAG 57.541 29.630 0.00 0.00 0.00 3.16
1314 1779 7.813148 TCCAACAAATTCGTTAAACAAGAAACA 59.187 29.630 0.00 0.00 0.00 2.83
1315 1780 8.175649 TCCAACAAATTCGTTAAACAAGAAAC 57.824 30.769 0.00 0.00 0.00 2.78
1316 1781 8.934507 ATCCAACAAATTCGTTAAACAAGAAA 57.065 26.923 0.00 0.00 0.00 2.52
1318 1783 7.436673 CCAATCCAACAAATTCGTTAAACAAGA 59.563 33.333 0.00 0.00 0.00 3.02
1319 1784 7.436673 TCCAATCCAACAAATTCGTTAAACAAG 59.563 33.333 0.00 0.00 0.00 3.16
1321 1786 6.806751 TCCAATCCAACAAATTCGTTAAACA 58.193 32.000 0.00 0.00 0.00 2.83
1322 1787 7.883229 ATCCAATCCAACAAATTCGTTAAAC 57.117 32.000 0.00 0.00 0.00 2.01
1324 1789 6.870965 CCAATCCAATCCAACAAATTCGTTAA 59.129 34.615 0.00 0.00 0.00 2.01
1325 1790 6.209589 TCCAATCCAATCCAACAAATTCGTTA 59.790 34.615 0.00 0.00 0.00 3.18
1326 1791 5.011533 TCCAATCCAATCCAACAAATTCGTT 59.988 36.000 0.00 0.00 0.00 3.85
1328 1793 5.070770 TCCAATCCAATCCAACAAATTCG 57.929 39.130 0.00 0.00 0.00 3.34
1329 1794 7.926674 AAATCCAATCCAATCCAACAAATTC 57.073 32.000 0.00 0.00 0.00 2.17
1330 1795 8.605065 ACTAAATCCAATCCAATCCAACAAATT 58.395 29.630 0.00 0.00 0.00 1.82
1331 1796 8.042515 CACTAAATCCAATCCAATCCAACAAAT 58.957 33.333 0.00 0.00 0.00 2.32
1332 1797 7.385267 CACTAAATCCAATCCAATCCAACAAA 58.615 34.615 0.00 0.00 0.00 2.83
1334 1799 5.105392 GCACTAAATCCAATCCAATCCAACA 60.105 40.000 0.00 0.00 0.00 3.33
1335 1800 5.351458 GCACTAAATCCAATCCAATCCAAC 58.649 41.667 0.00 0.00 0.00 3.77
1336 1801 4.405358 GGCACTAAATCCAATCCAATCCAA 59.595 41.667 0.00 0.00 0.00 3.53
1337 1802 3.960102 GGCACTAAATCCAATCCAATCCA 59.040 43.478 0.00 0.00 0.00 3.41
1338 1803 3.004734 CGGCACTAAATCCAATCCAATCC 59.995 47.826 0.00 0.00 0.00 3.01
1341 1806 1.748493 GCGGCACTAAATCCAATCCAA 59.252 47.619 0.00 0.00 0.00 3.53
1345 1848 0.107410 TCGGCGGCACTAAATCCAAT 60.107 50.000 10.53 0.00 0.00 3.16
1347 1850 1.153449 CTCGGCGGCACTAAATCCA 60.153 57.895 10.53 0.00 0.00 3.41
1353 1856 4.266070 GCGATCTCGGCGGCACTA 62.266 66.667 10.53 0.00 40.23 2.74
1375 1878 1.139308 CGAGCAGAGCAGAGACAGG 59.861 63.158 0.00 0.00 0.00 4.00
1394 1905 1.821241 CTGACACACCAACACGAGCG 61.821 60.000 0.00 0.00 0.00 5.03
1398 1909 0.461163 TGTCCTGACACACCAACACG 60.461 55.000 0.00 0.00 36.21 4.49
1402 1913 1.280710 ACACTTGTCCTGACACACCAA 59.719 47.619 0.00 0.00 41.67 3.67
1445 1968 3.391665 ATTCAAGCGAGAGGGGGCG 62.392 63.158 0.00 0.00 0.00 6.13
1464 1987 2.678336 GCGGGGATCAGAACAAACTAAG 59.322 50.000 0.00 0.00 0.00 2.18
1468 1991 0.521735 GTGCGGGGATCAGAACAAAC 59.478 55.000 0.00 0.00 0.00 2.93
1492 2015 5.914635 TGAACAAGCAGACGATTTTCAATTC 59.085 36.000 0.00 0.00 0.00 2.17
1495 2018 4.891627 TGAACAAGCAGACGATTTTCAA 57.108 36.364 0.00 0.00 0.00 2.69
1498 2021 3.004629 TGCATGAACAAGCAGACGATTTT 59.995 39.130 0.00 0.00 35.51 1.82
1526 2049 5.526115 CATCCGAAATCAATCAATCCCAAG 58.474 41.667 0.00 0.00 0.00 3.61
1527 2050 4.202141 GCATCCGAAATCAATCAATCCCAA 60.202 41.667 0.00 0.00 0.00 4.12
1528 2051 3.318839 GCATCCGAAATCAATCAATCCCA 59.681 43.478 0.00 0.00 0.00 4.37
1777 2308 2.229792 TGCAATCTTGTCAGGGACAAC 58.770 47.619 7.66 0.00 45.88 3.32
1821 2352 3.191903 CATCTGAATCTCGGAGGCG 57.808 57.895 4.96 0.00 34.87 5.52
1825 2356 0.670706 CTCCGCATCTGAATCTCGGA 59.329 55.000 10.76 10.76 45.70 4.55
2435 2979 2.161486 GCTCGATGAGCGTGGTGTC 61.161 63.158 2.68 0.00 45.85 3.67
2596 3140 1.003839 GACCTCCACAACATCCGCA 60.004 57.895 0.00 0.00 0.00 5.69
2598 3142 0.391661 CCTGACCTCCACAACATCCG 60.392 60.000 0.00 0.00 0.00 4.18
3214 3758 2.734591 GCGGCGTCCCTGATCATA 59.265 61.111 9.37 0.00 0.00 2.15
3466 4010 2.440409 GACGAGTACCCACTGGAGTAA 58.560 52.381 0.00 0.00 34.21 2.24
3642 4186 8.897872 AATTTGAAATGAGCTTGTCAGAAATT 57.102 26.923 0.00 0.00 39.07 1.82
3783 4356 3.474570 AGGGTCATGCTCTCCGGC 61.475 66.667 0.00 0.00 0.00 6.13
4002 4575 2.931649 TTCAGGAACCCCGACCCC 60.932 66.667 0.00 0.00 37.58 4.95
4103 4676 1.513158 CTGTACTGCTGGACCCTCG 59.487 63.158 3.17 0.00 0.00 4.63
4155 4728 1.513158 CCACGAGTTCTGCTCCGAT 59.487 57.895 0.00 0.00 41.10 4.18
4168 4741 3.282745 GAGCGCACTTCTCCCACGA 62.283 63.158 11.47 0.00 0.00 4.35
4185 4758 3.014085 GCCGTTGATCCCCGACTGA 62.014 63.158 2.96 0.00 0.00 3.41
4278 4851 1.812571 GAAATGACCTGCGAACCACAT 59.187 47.619 0.00 0.00 0.00 3.21
4289 4862 0.678048 GCAGGAAGGCGAAATGACCT 60.678 55.000 0.00 0.00 38.14 3.85
4326 4899 0.103208 GATCGATGGCAGTTCCTCGT 59.897 55.000 0.54 0.00 37.05 4.18
4407 4980 2.736995 CGAGTTTCTTCGCCGCCA 60.737 61.111 0.00 0.00 33.39 5.69
4517 5091 7.045693 ACCTCCCATCTACTGCTAGAATATA 57.954 40.000 0.00 0.00 32.49 0.86
4560 5141 8.693120 AGAATCAAAGTATCATCATCAGCAAT 57.307 30.769 0.00 0.00 0.00 3.56
4577 5161 8.985922 TCTTCTGGATCTCTATCAAGAATCAAA 58.014 33.333 5.82 0.00 46.53 2.69
4810 5395 2.938956 ATGGTTCGATCCATTCTCCC 57.061 50.000 20.16 0.00 44.75 4.30
4866 5452 5.699839 ACCGTTCTTTTTACAAGATGATGC 58.300 37.500 0.00 0.00 0.00 3.91
4962 5548 2.925966 ATCTCCCCTTTTGCATCCAA 57.074 45.000 0.00 0.00 0.00 3.53
4996 5582 4.158579 TGCTAGTAGACACCACAAGATCTG 59.841 45.833 0.00 0.00 0.00 2.90
5042 5628 9.415544 GCATCAAAATTAATCTATTCACCATCC 57.584 33.333 0.00 0.00 0.00 3.51
5081 5667 7.898918 TCAATCCATTCTCATTGAACATGTTT 58.101 30.769 13.36 0.00 36.33 2.83
5164 5765 5.286438 GGGTCCTGTTTTCAACAACATAAC 58.714 41.667 0.00 0.00 41.61 1.89
5180 5791 0.250467 CAGGCATTATCGGGGTCCTG 60.250 60.000 0.00 0.00 35.68 3.86
5208 5819 2.565391 TCGATCTGCAGTGGTAAAAGGA 59.435 45.455 14.67 0.00 0.00 3.36
5210 5821 3.181530 CGTTCGATCTGCAGTGGTAAAAG 60.182 47.826 14.67 2.41 0.00 2.27
5247 5858 4.177165 TCCATCTACGCGTCACTAAAAA 57.823 40.909 18.63 0.00 0.00 1.94
5262 5873 4.762251 GCCTGTCAACTAAACTTTCCATCT 59.238 41.667 0.00 0.00 0.00 2.90
5263 5874 4.518970 TGCCTGTCAACTAAACTTTCCATC 59.481 41.667 0.00 0.00 0.00 3.51
5268 5879 3.005791 GCCATGCCTGTCAACTAAACTTT 59.994 43.478 0.00 0.00 0.00 2.66
5271 5882 1.885887 TGCCATGCCTGTCAACTAAAC 59.114 47.619 0.00 0.00 0.00 2.01
5330 5943 2.247311 GCAGGTTTAGTTGACATGCG 57.753 50.000 0.00 0.00 43.52 4.73
5333 5946 3.356290 GGATGGCAGGTTTAGTTGACAT 58.644 45.455 0.00 0.00 45.47 3.06
5346 5959 1.227380 GTGACGCTAGGGATGGCAG 60.227 63.158 14.59 0.00 0.00 4.85
5383 5996 0.597898 TGACGACGGCAAATCGAACA 60.598 50.000 0.00 7.10 42.25 3.18
5396 6009 3.181537 CCGAACGTTTAGGATTTGACGAC 60.182 47.826 15.97 0.00 38.74 4.34
5433 6046 9.294030 CTCATCTTCAGCAACCATTTTTATTAC 57.706 33.333 0.00 0.00 0.00 1.89
5437 6050 5.774690 ACCTCATCTTCAGCAACCATTTTTA 59.225 36.000 0.00 0.00 0.00 1.52
5481 6121 9.865321 AAACATTCGTTTACTACTCTATGCTTA 57.135 29.630 0.00 0.00 43.59 3.09
5507 6147 8.654094 TGCATCATATCTTTCTTCTTGGATCTA 58.346 33.333 0.00 0.00 0.00 1.98
5540 6180 6.154203 TGCTAATAGACTCCACAAGATCTG 57.846 41.667 0.00 0.00 0.00 2.90
5568 6208 7.934120 AGTTAACCATCTGCTCTTGGTATAATC 59.066 37.037 0.88 4.02 45.44 1.75
5649 6300 1.001503 CTGCCTCTCCCTCCACTCT 59.998 63.158 0.00 0.00 0.00 3.24
5650 6301 1.000993 TCTGCCTCTCCCTCCACTC 59.999 63.158 0.00 0.00 0.00 3.51
5651 6302 1.305718 GTCTGCCTCTCCCTCCACT 60.306 63.158 0.00 0.00 0.00 4.00
5652 6303 0.980231 ATGTCTGCCTCTCCCTCCAC 60.980 60.000 0.00 0.00 0.00 4.02
5653 6304 0.252881 AATGTCTGCCTCTCCCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
5654 6305 0.179936 CAATGTCTGCCTCTCCCTCC 59.820 60.000 0.00 0.00 0.00 4.30
5655 6306 1.198713 TCAATGTCTGCCTCTCCCTC 58.801 55.000 0.00 0.00 0.00 4.30
5656 6307 1.767681 GATCAATGTCTGCCTCTCCCT 59.232 52.381 0.00 0.00 0.00 4.20
5657 6308 1.767681 AGATCAATGTCTGCCTCTCCC 59.232 52.381 0.00 0.00 0.00 4.30
5658 6309 2.545532 CGAGATCAATGTCTGCCTCTCC 60.546 54.545 0.00 0.00 33.36 3.71
5659 6310 2.360483 TCGAGATCAATGTCTGCCTCTC 59.640 50.000 0.00 0.00 33.50 3.20
5791 6442 9.825972 CGCAAAGGAAATATCGTTGATATTATT 57.174 29.630 11.33 5.91 42.29 1.40
5792 6443 9.214957 TCGCAAAGGAAATATCGTTGATATTAT 57.785 29.630 11.33 4.13 42.29 1.28
5793 6444 8.596271 TCGCAAAGGAAATATCGTTGATATTA 57.404 30.769 11.33 0.00 42.29 0.98
5794 6445 7.490962 TCGCAAAGGAAATATCGTTGATATT 57.509 32.000 6.29 6.29 44.17 1.28
5795 6446 7.490962 TTCGCAAAGGAAATATCGTTGATAT 57.509 32.000 0.00 0.00 36.89 1.63
5796 6447 6.912203 TTCGCAAAGGAAATATCGTTGATA 57.088 33.333 0.00 0.00 34.10 2.15
5797 6448 5.811399 TTCGCAAAGGAAATATCGTTGAT 57.189 34.783 0.00 0.00 34.10 2.57
5798 6449 5.614923 TTTCGCAAAGGAAATATCGTTGA 57.385 34.783 0.00 0.00 34.10 3.18
5799 6450 5.627367 TGTTTTCGCAAAGGAAATATCGTTG 59.373 36.000 0.00 0.00 35.95 4.10
5800 6451 5.764131 TGTTTTCGCAAAGGAAATATCGTT 58.236 33.333 0.00 0.00 35.95 3.85
5801 6452 5.365403 TGTTTTCGCAAAGGAAATATCGT 57.635 34.783 0.00 0.00 35.95 3.73
5802 6453 6.869421 ATTGTTTTCGCAAAGGAAATATCG 57.131 33.333 0.00 0.00 35.95 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.