Multiple sequence alignment - TraesCS6D01G383500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G383500 chr6D 100.000 7179 0 0 1 7179 462460497 462467675 0.000000e+00 13258.0
1 TraesCS6D01G383500 chr6D 100.000 33 0 0 6405 6437 298180152 298180184 2.160000e-05 62.1
2 TraesCS6D01G383500 chr6B 94.731 3796 142 34 1349 5105 704944204 704947980 0.000000e+00 5849.0
3 TraesCS6D01G383500 chr6B 90.292 1061 65 11 5104 6145 704948239 704949280 0.000000e+00 1354.0
4 TraesCS6D01G383500 chr6B 82.857 595 58 20 1 587 704942872 704943430 1.800000e-135 494.0
5 TraesCS6D01G383500 chr6B 77.578 834 112 45 1123 1921 370061639 370062432 1.110000e-117 435.0
6 TraesCS6D01G383500 chr6B 77.155 232 24 16 6656 6874 704949564 704949779 2.740000e-19 108.0
7 TraesCS6D01G383500 chr6A 86.924 3365 247 103 83 3334 609251768 609255052 0.000000e+00 3598.0
8 TraesCS6D01G383500 chr6A 89.782 1194 86 18 5219 6388 609257101 609258282 0.000000e+00 1496.0
9 TraesCS6D01G383500 chr6A 95.249 905 37 2 4283 5182 609256204 609257107 0.000000e+00 1428.0
10 TraesCS6D01G383500 chr6A 96.601 559 18 1 3373 3931 609255165 609255722 0.000000e+00 926.0
11 TraesCS6D01G383500 chr6A 95.087 346 16 1 3946 4291 609255707 609256051 1.760000e-150 544.0
12 TraesCS6D01G383500 chr6A 92.884 267 10 4 6830 7095 609258625 609258883 5.260000e-101 379.0
13 TraesCS6D01G383500 chr6A 90.189 265 9 5 6466 6729 609258325 609258573 5.370000e-86 329.0
14 TraesCS6D01G383500 chr6A 92.045 88 2 2 7089 7176 609258956 609259038 1.270000e-22 119.0
15 TraesCS6D01G383500 chr6A 93.333 60 1 3 5 63 609233205 609233262 1.280000e-12 86.1
16 TraesCS6D01G383500 chr6A 97.826 46 1 0 6751 6796 609258572 609258617 5.970000e-11 80.5
17 TraesCS6D01G383500 chr3B 77.618 487 69 21 3029 3488 568428816 568429289 7.140000e-65 259.0
18 TraesCS6D01G383500 chr2D 89.637 193 20 0 2792 2984 621079732 621079540 5.560000e-61 246.0
19 TraesCS6D01G383500 chr4B 83.128 243 32 4 3974 4211 441050984 441051222 5.640000e-51 213.0
20 TraesCS6D01G383500 chr2B 76.181 487 68 21 3029 3488 186923888 186923423 5.640000e-51 213.0
21 TraesCS6D01G383500 chr4D 84.234 222 25 9 3726 3943 239764681 239764896 2.620000e-49 207.0
22 TraesCS6D01G383500 chr4D 100.000 35 0 0 6405 6439 133997253 133997219 1.670000e-06 65.8
23 TraesCS6D01G383500 chr4D 100.000 35 0 0 6405 6439 264108697 264108731 1.670000e-06 65.8
24 TraesCS6D01G383500 chr5A 81.893 243 35 4 3974 4211 577554169 577554407 5.680000e-46 196.0
25 TraesCS6D01G383500 chr5A 80.608 263 37 11 4008 4264 550882455 550882201 2.640000e-44 191.0
26 TraesCS6D01G383500 chr2A 79.167 240 39 7 3978 4211 375945656 375945422 9.640000e-34 156.0
27 TraesCS6D01G383500 chr7D 97.826 46 1 0 2827 2872 138779770 138779815 5.970000e-11 80.5
28 TraesCS6D01G383500 chr7D 100.000 35 0 0 6405 6439 291034226 291034260 1.670000e-06 65.8
29 TraesCS6D01G383500 chr5D 100.000 35 0 0 6405 6439 60564318 60564284 1.670000e-06 65.8
30 TraesCS6D01G383500 chr5D 100.000 35 0 0 6405 6439 518390734 518390700 1.670000e-06 65.8
31 TraesCS6D01G383500 chr5D 100.000 35 0 0 6405 6439 518462873 518462839 1.670000e-06 65.8
32 TraesCS6D01G383500 chr1D 100.000 34 0 0 6405 6438 280182760 280182727 6.010000e-06 63.9
33 TraesCS6D01G383500 chr1D 100.000 33 0 0 6405 6437 277343788 277343756 2.160000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G383500 chr6D 462460497 462467675 7178 False 13258.000000 13258 100.000000 1 7179 1 chr6D.!!$F2 7178
1 TraesCS6D01G383500 chr6B 704942872 704949779 6907 False 1951.250000 5849 86.258750 1 6874 4 chr6B.!!$F2 6873
2 TraesCS6D01G383500 chr6B 370061639 370062432 793 False 435.000000 435 77.578000 1123 1921 1 chr6B.!!$F1 798
3 TraesCS6D01G383500 chr6A 609251768 609259038 7270 False 988.833333 3598 92.954111 83 7176 9 chr6A.!!$F2 7093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1013 0.028902 GCGATAAACAATCACCCGCC 59.971 55.000 0.00 0.0 35.79 6.13 F
1072 1099 0.178861 ATCCTTCCCCACACACCTCT 60.179 55.000 0.00 0.0 0.00 3.69 F
1906 1987 0.400213 AGCAAATCCAGAACCCGACA 59.600 50.000 0.00 0.0 0.00 4.35 F
2724 2832 1.273327 GAGGGAAAACCCATGTGCTTG 59.727 52.381 8.05 0.0 41.63 4.01 F
2734 2842 2.421952 CCCATGTGCTTGTATGGTAGCT 60.422 50.000 0.00 0.0 41.80 3.32 F
4072 4294 0.179045 AAAAGGGCATCGATCCTCCG 60.179 55.000 6.14 0.0 32.02 4.63 F
4078 4300 1.749334 GCATCGATCCTCCGTCCCTT 61.749 60.000 0.00 0.0 0.00 3.95 F
5056 5438 2.037902 TCCTGGTGCGTTCAACTTGATA 59.962 45.455 0.00 0.0 0.00 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2263 0.178944 GGCCAAAAAGGGGTACACCT 60.179 55.0 12.16 12.16 44.56 4.00 R
2774 2882 0.179100 CCGTGGATGAGTACCTGCAG 60.179 60.0 6.78 6.78 0.00 4.41 R
3083 3199 2.814336 GCCTCCAAAGGAAACACTGTAG 59.186 50.0 0.00 0.00 46.67 2.74 R
3964 4186 0.101399 ACATTTTCCAAACGCGCACA 59.899 45.0 5.73 0.00 0.00 4.57 R
4445 4827 0.984230 TCTCCATGTTCCTCCGCTTT 59.016 50.0 0.00 0.00 0.00 3.51 R
5176 5823 0.532862 ACAAGCAACCGGTCAGACAG 60.533 55.0 8.04 0.00 0.00 3.51 R
5177 5824 0.813610 CACAAGCAACCGGTCAGACA 60.814 55.0 8.04 0.00 0.00 3.41 R
6348 7022 0.241481 AACGACGAGACTCTTGCTCC 59.759 55.0 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.249799 CCTGTATGAGTAGAGAGAGCACG 59.750 52.174 0.00 0.00 0.00 5.34
73 74 4.123506 CTGTATGAGTAGAGAGAGCACGA 58.876 47.826 0.00 0.00 0.00 4.35
74 75 4.514401 TGTATGAGTAGAGAGAGCACGAA 58.486 43.478 0.00 0.00 0.00 3.85
75 76 4.333095 TGTATGAGTAGAGAGAGCACGAAC 59.667 45.833 0.00 0.00 0.00 3.95
76 77 3.060736 TGAGTAGAGAGAGCACGAACT 57.939 47.619 0.00 0.00 0.00 3.01
77 78 2.744741 TGAGTAGAGAGAGCACGAACTG 59.255 50.000 0.00 0.00 0.00 3.16
78 79 3.004171 GAGTAGAGAGAGCACGAACTGA 58.996 50.000 0.00 0.00 0.00 3.41
79 80 2.745281 AGTAGAGAGAGCACGAACTGAC 59.255 50.000 0.00 0.00 0.00 3.51
80 81 1.904287 AGAGAGAGCACGAACTGACT 58.096 50.000 0.00 0.00 0.00 3.41
81 82 3.060736 AGAGAGAGCACGAACTGACTA 57.939 47.619 0.00 0.00 0.00 2.59
132 133 2.080693 GTGCCACATAACCACGAATCA 58.919 47.619 0.00 0.00 0.00 2.57
185 186 3.837213 ATGGATCAAAGTGTGCTTTCG 57.163 42.857 0.00 0.00 42.54 3.46
186 187 2.844946 TGGATCAAAGTGTGCTTTCGA 58.155 42.857 0.00 0.00 42.54 3.71
209 210 3.078837 ACACTTTGTTTGTTGACGACCT 58.921 40.909 0.00 0.00 0.00 3.85
343 350 6.882610 TGTGTGCTTCATCTAAAGAAACAT 57.117 33.333 0.00 0.00 31.36 2.71
345 352 8.565896 TGTGTGCTTCATCTAAAGAAACATAT 57.434 30.769 0.00 0.00 31.36 1.78
426 433 4.799678 TGAACGTTTTCTTCAAACAAGCA 58.200 34.783 0.46 0.00 44.63 3.91
466 473 6.783892 TTGCAAGAACATTTTCAAATAGGC 57.216 33.333 0.00 0.00 33.72 3.93
469 476 5.060940 GCAAGAACATTTTCAAATAGGCGAC 59.939 40.000 0.00 0.00 33.72 5.19
481 488 7.028926 TCAAATAGGCGACACTTTTTAACAA 57.971 32.000 0.00 0.00 0.00 2.83
489 496 7.221259 AGGCGACACTTTTTAACAATGTTTTAC 59.779 33.333 3.17 0.00 0.00 2.01
496 503 8.376942 ACTTTTTAACAATGTTTTACAACTGCG 58.623 29.630 3.17 0.00 33.58 5.18
499 506 2.099921 ACAATGTTTTACAACTGCGCCA 59.900 40.909 4.18 0.00 33.58 5.69
500 507 3.243704 ACAATGTTTTACAACTGCGCCAT 60.244 39.130 4.18 0.00 33.58 4.40
501 508 3.658757 ATGTTTTACAACTGCGCCATT 57.341 38.095 4.18 0.00 33.58 3.16
505 512 5.348986 TGTTTTACAACTGCGCCATTTTTA 58.651 33.333 4.18 0.00 33.58 1.52
507 514 5.891810 TTTACAACTGCGCCATTTTTAAC 57.108 34.783 4.18 0.00 0.00 2.01
510 517 3.740321 ACAACTGCGCCATTTTTAACATG 59.260 39.130 4.18 0.00 0.00 3.21
561 568 6.668323 ACAACTTGAAATACCAAGATGAACG 58.332 36.000 16.87 0.00 44.57 3.95
565 572 7.138736 ACTTGAAATACCAAGATGAACGTTTG 58.861 34.615 0.46 0.00 44.66 2.93
583 590 8.509715 AACGTTTGTTAAACACAGAATGGGCA 62.510 38.462 0.00 0.00 39.26 5.36
593 600 5.844301 CACAGAATGGGCATTTGTTAAAC 57.156 39.130 0.00 0.00 43.62 2.01
594 601 5.295950 CACAGAATGGGCATTTGTTAAACA 58.704 37.500 0.00 0.00 43.62 2.83
595 602 5.177327 CACAGAATGGGCATTTGTTAAACAC 59.823 40.000 0.00 0.00 43.62 3.32
596 603 5.163364 ACAGAATGGGCATTTGTTAAACACA 60.163 36.000 0.00 0.00 43.62 3.72
597 604 5.177327 CAGAATGGGCATTTGTTAAACACAC 59.823 40.000 0.00 0.00 33.98 3.82
598 605 4.679373 ATGGGCATTTGTTAAACACACA 57.321 36.364 0.00 0.00 33.98 3.72
599 606 4.679373 TGGGCATTTGTTAAACACACAT 57.321 36.364 0.00 0.00 33.98 3.21
600 607 4.626042 TGGGCATTTGTTAAACACACATC 58.374 39.130 0.00 0.00 33.98 3.06
601 608 4.100035 TGGGCATTTGTTAAACACACATCA 59.900 37.500 0.00 0.00 33.98 3.07
602 609 4.685628 GGGCATTTGTTAAACACACATCAG 59.314 41.667 0.00 0.00 33.98 2.90
607 614 8.174422 GCATTTGTTAAACACACATCAGTTTTT 58.826 29.630 0.00 0.00 38.71 1.94
630 637 9.922305 TTTTTAAATACAAAATGACGCCTTTTG 57.078 25.926 13.15 13.15 45.01 2.44
631 638 5.590104 AAATACAAAATGACGCCTTTTGC 57.410 34.783 14.14 0.00 43.92 3.68
634 647 3.465871 ACAAAATGACGCCTTTTGCAAT 58.534 36.364 0.00 0.00 43.92 3.56
695 708 5.918011 TGCGTAAAACAATTTCTTTAGCCTG 59.082 36.000 0.00 0.00 0.00 4.85
705 718 9.474313 ACAATTTCTTTAGCCTGTATATCCAAA 57.526 29.630 0.00 0.00 0.00 3.28
715 728 4.130118 CTGTATATCCAAACTGACCAGCC 58.870 47.826 0.00 0.00 0.00 4.85
719 732 0.478072 TCCAAACTGACCAGCCATGT 59.522 50.000 0.00 0.00 0.00 3.21
722 735 2.684881 CCAAACTGACCAGCCATGTATC 59.315 50.000 0.00 0.00 0.00 2.24
765 781 3.636282 AAACCCGGAACATTTTCGAAG 57.364 42.857 0.73 0.00 31.78 3.79
769 785 3.244318 ACCCGGAACATTTTCGAAGTACT 60.244 43.478 0.73 0.00 31.78 2.73
772 788 5.583457 CCCGGAACATTTTCGAAGTACTTAT 59.417 40.000 8.42 0.00 31.78 1.73
773 789 6.093082 CCCGGAACATTTTCGAAGTACTTATT 59.907 38.462 8.42 0.00 31.78 1.40
775 791 8.019094 CCGGAACATTTTCGAAGTACTTATTTT 58.981 33.333 8.42 0.00 31.78 1.82
812 838 6.800072 AGTACAAGGGGAAAATGAAAACAA 57.200 33.333 0.00 0.00 0.00 2.83
823 849 9.114952 GGGAAAATGAAAACAAAAGGTGAAATA 57.885 29.630 0.00 0.00 0.00 1.40
830 856 7.489757 TGAAAACAAAAGGTGAAATAGAAACCG 59.510 33.333 0.00 0.00 39.07 4.44
832 858 6.894339 ACAAAAGGTGAAATAGAAACCGAT 57.106 33.333 0.00 0.00 39.07 4.18
835 861 8.852135 ACAAAAGGTGAAATAGAAACCGATAAA 58.148 29.630 0.00 0.00 39.07 1.40
836 862 9.341899 CAAAAGGTGAAATAGAAACCGATAAAG 57.658 33.333 0.00 0.00 39.07 1.85
838 865 8.857694 AAGGTGAAATAGAAACCGATAAAGAA 57.142 30.769 0.00 0.00 39.07 2.52
864 891 4.732285 ACATACACTGCAAAGTCGAAAG 57.268 40.909 0.00 0.00 0.00 2.62
867 894 3.951979 ACACTGCAAAGTCGAAAGAAG 57.048 42.857 0.00 0.00 45.01 2.85
903 930 1.228184 CATGATGGAGAGCCCCTGC 60.228 63.158 0.00 0.00 37.95 4.85
909 936 4.792804 GAGAGCCCCTGCACCAGC 62.793 72.222 0.00 0.00 41.13 4.85
949 976 2.240493 AGATTAGAATGGCCGTTCCG 57.760 50.000 30.13 0.00 37.80 4.30
983 1010 1.676006 CCTGGCGATAAACAATCACCC 59.324 52.381 0.00 0.00 36.15 4.61
986 1013 0.028902 GCGATAAACAATCACCCGCC 59.971 55.000 0.00 0.00 35.79 6.13
988 1015 1.029681 GATAAACAATCACCCGCCCC 58.970 55.000 0.00 0.00 34.46 5.80
989 1016 0.396556 ATAAACAATCACCCGCCCCC 60.397 55.000 0.00 0.00 0.00 5.40
990 1017 2.823376 TAAACAATCACCCGCCCCCG 62.823 60.000 0.00 0.00 0.00 5.73
1001 1028 4.796495 GCCCCCGGTGCTACTTGG 62.796 72.222 0.00 0.00 0.00 3.61
1002 1029 4.796495 CCCCCGGTGCTACTTGGC 62.796 72.222 0.00 0.00 0.00 4.52
1003 1030 4.028490 CCCCGGTGCTACTTGGCA 62.028 66.667 0.00 0.00 40.15 4.92
1010 1037 2.632643 TGCTACTTGGCACTTGCAG 58.367 52.632 3.15 0.00 44.36 4.41
1031 1058 3.069079 GTTCCAAAACCCTACTCCTCC 57.931 52.381 0.00 0.00 0.00 4.30
1032 1059 1.665137 TCCAAAACCCTACTCCTCCC 58.335 55.000 0.00 0.00 0.00 4.30
1033 1060 0.624254 CCAAAACCCTACTCCTCCCC 59.376 60.000 0.00 0.00 0.00 4.81
1034 1061 0.624254 CAAAACCCTACTCCTCCCCC 59.376 60.000 0.00 0.00 0.00 5.40
1061 1088 1.411651 CCTCCTTCCGGATCCTTCCC 61.412 65.000 4.15 0.00 39.01 3.97
1062 1089 1.384082 TCCTTCCGGATCCTTCCCC 60.384 63.158 4.15 0.00 39.01 4.81
1063 1090 1.692749 CCTTCCGGATCCTTCCCCA 60.693 63.158 4.15 0.00 39.01 4.96
1065 1092 1.229690 TTCCGGATCCTTCCCCACA 60.230 57.895 4.15 0.00 39.01 4.17
1067 1094 2.297895 CCGGATCCTTCCCCACACA 61.298 63.158 10.75 0.00 39.01 3.72
1069 1096 1.303282 GGATCCTTCCCCACACACC 59.697 63.158 3.84 0.00 35.84 4.16
1070 1097 1.208165 GGATCCTTCCCCACACACCT 61.208 60.000 3.84 0.00 35.84 4.00
1071 1098 0.253327 GATCCTTCCCCACACACCTC 59.747 60.000 0.00 0.00 0.00 3.85
1072 1099 0.178861 ATCCTTCCCCACACACCTCT 60.179 55.000 0.00 0.00 0.00 3.69
1392 1460 2.435938 TGATCTGCGCGGTTTCCC 60.436 61.111 17.37 2.88 0.00 3.97
1393 1461 3.202706 GATCTGCGCGGTTTCCCC 61.203 66.667 17.37 0.00 0.00 4.81
1578 1649 0.794473 GCTTTCAGCAATGCTTTGGC 59.206 50.000 4.36 4.24 41.89 4.52
1687 1759 5.703130 GGTTCATGGATAGATCTTTAGGCAC 59.297 44.000 0.00 0.00 0.00 5.01
1718 1791 6.643388 TGTGATGTTTGCTATATCTGACTGT 58.357 36.000 0.00 0.00 0.00 3.55
1811 1884 7.947890 ACACCCTCTTGAAAGAAATGGTATTAA 59.052 33.333 7.76 0.00 32.77 1.40
1903 1984 1.508088 GCAGCAAATCCAGAACCCG 59.492 57.895 0.00 0.00 0.00 5.28
1906 1987 0.400213 AGCAAATCCAGAACCCGACA 59.600 50.000 0.00 0.00 0.00 4.35
1972 2053 3.118454 GATGGCACCACGTCCACG 61.118 66.667 0.00 0.00 46.33 4.94
2032 2113 3.232213 TGCATCGAAGAAGGTCTGTAC 57.768 47.619 0.00 0.00 43.58 2.90
2071 2152 7.255173 CCCTCTTATCTGCTTTTGATGATTCTG 60.255 40.741 0.00 0.00 0.00 3.02
2123 2208 2.520686 GCTGCTTGCATTTGAAATGC 57.479 45.000 30.21 30.21 44.76 3.56
2243 2331 6.304356 TGCTGTTAATCTTTCTGAACTGTG 57.696 37.500 0.00 0.00 0.00 3.66
2289 2377 5.052693 TGGTATTCTGGCTTAATGCATCT 57.947 39.130 0.00 0.00 45.15 2.90
2299 2387 7.229306 TCTGGCTTAATGCATCTAATTAGTTGG 59.771 37.037 20.13 9.85 45.15 3.77
2324 2412 5.551760 AGGATTACGAATGTCTGCTTTTG 57.448 39.130 0.00 0.00 0.00 2.44
2368 2459 3.684130 TGTGAACACAAGTGCCTACACAT 60.684 43.478 5.11 0.00 42.04 3.21
2423 2524 3.539431 TTAACGTTTATGGGTGTTGCG 57.461 42.857 5.91 0.00 0.00 4.85
2476 2577 5.561532 CGCAACTAATTGGCTGGATCAATAG 60.562 44.000 0.00 0.00 36.23 1.73
2608 2712 2.299582 TGAACATGCATTTCCCAGTTGG 59.700 45.455 14.81 0.00 0.00 3.77
2622 2726 3.440173 CCCAGTTGGTTGCTACACATTAG 59.560 47.826 0.00 0.00 0.00 1.73
2626 2730 2.985896 TGGTTGCTACACATTAGAGCC 58.014 47.619 0.00 0.00 35.24 4.70
2633 2737 4.695455 TGCTACACATTAGAGCCAAAAGAC 59.305 41.667 0.00 0.00 35.24 3.01
2643 2747 9.010029 CATTAGAGCCAAAAGACTAACCTTAAA 57.990 33.333 0.00 0.00 0.00 1.52
2644 2748 8.983702 TTAGAGCCAAAAGACTAACCTTAAAA 57.016 30.769 0.00 0.00 0.00 1.52
2663 2767 3.677156 AAATATGGGCCTTCTGCTCTT 57.323 42.857 4.53 0.00 42.79 2.85
2673 2777 3.815401 GCCTTCTGCTCTTAACTTGTGAA 59.185 43.478 0.00 0.00 36.87 3.18
2677 2781 6.914757 CCTTCTGCTCTTAACTTGTGAAAAAG 59.085 38.462 0.00 0.00 0.00 2.27
2682 2786 8.046294 TGCTCTTAACTTGTGAAAAAGTGTTA 57.954 30.769 0.00 0.00 40.28 2.41
2690 2798 6.870965 ACTTGTGAAAAAGTGTTACAATTGCA 59.129 30.769 5.05 0.00 38.95 4.08
2721 2829 2.507407 TAGAGGGAAAACCCATGTGC 57.493 50.000 8.05 0.00 41.63 4.57
2724 2832 1.273327 GAGGGAAAACCCATGTGCTTG 59.727 52.381 8.05 0.00 41.63 4.01
2734 2842 2.421952 CCCATGTGCTTGTATGGTAGCT 60.422 50.000 0.00 0.00 41.80 3.32
2735 2843 2.615447 CCATGTGCTTGTATGGTAGCTG 59.385 50.000 0.00 0.00 39.18 4.24
2736 2844 3.273434 CATGTGCTTGTATGGTAGCTGT 58.727 45.455 0.00 0.00 38.22 4.40
2739 2847 3.007940 TGTGCTTGTATGGTAGCTGTCTT 59.992 43.478 0.00 0.00 38.22 3.01
2749 2857 5.521906 TGGTAGCTGTCTTCTTGCTATAG 57.478 43.478 0.00 0.00 40.70 1.31
2752 2860 5.163395 GGTAGCTGTCTTCTTGCTATAGGTT 60.163 44.000 0.00 0.00 40.70 3.50
2774 2882 7.466805 GGTTCATAGTAACCGGTTGTTATTTC 58.533 38.462 30.08 15.96 41.33 2.17
2860 2969 6.146184 TGAATTTCTCGAGACATTCAAGACAC 59.854 38.462 36.95 20.46 43.88 3.67
2865 2974 3.069586 TCGAGACATTCAAGACACCAGTT 59.930 43.478 0.00 0.00 0.00 3.16
2939 3048 5.568620 ACTCTTAGGACAAAGGTGATTGT 57.431 39.130 0.00 0.00 45.82 2.71
2964 3073 9.129209 GTACTCTATTTCACCATTTTTCTTTGC 57.871 33.333 0.00 0.00 0.00 3.68
3048 3163 2.618816 GGATTGGCTGATCAGTTGACCA 60.619 50.000 23.38 18.27 0.00 4.02
3083 3199 9.382244 GTGAATGCGGTAATGTTATATTTCTTC 57.618 33.333 0.00 0.00 0.00 2.87
3321 3437 5.667539 TCCTTCTGAACTTCATAGACCTG 57.332 43.478 0.00 0.00 0.00 4.00
3652 3854 5.755375 ACATGTAGAATCTTGCCTACAATCG 59.245 40.000 0.00 0.00 45.51 3.34
3757 3959 3.159213 ACATGCATCAGTGAAGGGAAA 57.841 42.857 0.00 0.00 0.00 3.13
3778 3980 4.663636 ACTGTTTAACTGACGCATAAGC 57.336 40.909 8.91 0.00 37.42 3.09
3961 4183 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3964 4186 5.026121 TCTCTCTCTCTCTCTCTCTCTTGT 58.974 45.833 0.00 0.00 0.00 3.16
4072 4294 0.179045 AAAAGGGCATCGATCCTCCG 60.179 55.000 6.14 0.00 32.02 4.63
4078 4300 1.749334 GCATCGATCCTCCGTCCCTT 61.749 60.000 0.00 0.00 0.00 3.95
4176 4398 2.061848 TGATCTGTTTGGGGTTCCAGA 58.938 47.619 0.00 0.00 45.04 3.86
4290 4672 9.819267 AGATGTAACTATCTAAAACCTAAGCAC 57.181 33.333 0.00 0.00 35.70 4.40
4367 4749 7.655236 TCATGCATTGTTAATTTTGAAGTGG 57.345 32.000 0.00 0.00 0.00 4.00
4915 5297 4.785669 GCTTATGCTATCGATATGTGGC 57.214 45.455 5.40 6.52 36.03 5.01
4919 5301 3.857549 TGCTATCGATATGTGGCTCTC 57.142 47.619 5.40 0.00 0.00 3.20
4927 5309 3.120286 CGATATGTGGCTCTCGATTTTCG 59.880 47.826 0.00 0.00 42.10 3.46
4954 5336 6.902974 AGGGTATTGGCTTTGATTAGGATTTT 59.097 34.615 0.00 0.00 0.00 1.82
5056 5438 2.037902 TCCTGGTGCGTTCAACTTGATA 59.962 45.455 0.00 0.00 0.00 2.15
5175 5822 7.810766 AATTATTTTCTTACATGCGTTGGTG 57.189 32.000 0.00 0.00 0.00 4.17
5176 5823 2.697431 TTTCTTACATGCGTTGGTGC 57.303 45.000 0.00 0.00 0.00 5.01
5177 5824 1.890876 TTCTTACATGCGTTGGTGCT 58.109 45.000 0.00 0.00 35.36 4.40
5178 5825 1.155889 TCTTACATGCGTTGGTGCTG 58.844 50.000 0.00 0.00 35.36 4.41
5179 5826 0.874390 CTTACATGCGTTGGTGCTGT 59.126 50.000 0.00 0.00 35.36 4.40
5194 5841 1.845809 GCTGTCTGACCGGTTGCTTG 61.846 60.000 9.42 0.00 0.00 4.01
5249 5896 5.048504 TGTTTTGCTTGAGGATCTTGCTTAG 60.049 40.000 0.00 0.00 35.67 2.18
5272 5919 3.565307 TGCTTTGGATCTTGGTTGACTT 58.435 40.909 0.00 0.00 0.00 3.01
5433 6080 7.602517 ATTGACATGCTCTTTTCTACTGTAC 57.397 36.000 0.00 0.00 0.00 2.90
5449 6096 4.231273 ACTGTACCCATATCAGTATGCCA 58.769 43.478 0.00 0.00 40.06 4.92
5465 6112 2.229792 TGCCAGTGCTAACTTTGGAAG 58.770 47.619 0.00 0.00 38.71 3.46
5506 6153 4.720680 GGGGTGGGGGCATTTGCT 62.721 66.667 2.12 0.00 41.70 3.91
5539 6186 0.387929 TTATCCCCAAGACGCTAGCG 59.612 55.000 34.27 34.27 46.03 4.26
5588 6235 6.433404 AGACGTTATTGTCTCTCTTGAGGTAA 59.567 38.462 0.00 0.00 45.97 2.85
5591 6238 6.398918 GTTATTGTCTCTCTTGAGGTAAGCA 58.601 40.000 0.00 0.00 40.58 3.91
5593 6240 2.229062 TGTCTCTCTTGAGGTAAGCACG 59.771 50.000 0.00 0.00 40.58 5.34
5609 6256 3.997762 AGCACGTCCACTTGTTGTATTA 58.002 40.909 0.00 0.00 0.00 0.98
5611 6258 4.630069 AGCACGTCCACTTGTTGTATTATC 59.370 41.667 0.00 0.00 0.00 1.75
5613 6260 5.121768 GCACGTCCACTTGTTGTATTATCTT 59.878 40.000 0.00 0.00 0.00 2.40
5686 6333 2.740714 GCGTCGGCTGATGTTCCAC 61.741 63.158 16.10 0.00 35.83 4.02
5773 6420 0.041238 TCGACCCTGAGATGGAAGGT 59.959 55.000 0.00 0.00 0.00 3.50
5779 6426 5.337788 GACCCTGAGATGGAAGGTATCTAT 58.662 45.833 0.00 0.00 35.14 1.98
5812 6459 1.014044 TGAAGCGCCAGATCGTCAAC 61.014 55.000 2.29 0.00 0.00 3.18
5815 6462 2.508891 GCGCCAGATCGTCAACTCG 61.509 63.158 0.00 0.00 0.00 4.18
5853 6500 4.063689 CAGTGTTCATTTCTGAGCTGACT 58.936 43.478 0.00 0.00 34.04 3.41
5855 6502 3.122613 GTGTTCATTTCTGAGCTGACTCG 59.877 47.826 0.00 0.00 46.69 4.18
5895 6547 6.915544 AAGACGAGTATTATCTGTGACGTA 57.084 37.500 0.00 0.00 33.10 3.57
5908 6562 3.445857 TGTGACGTATGTTGACAAACGA 58.554 40.909 15.73 0.00 39.30 3.85
5909 6563 3.864003 TGTGACGTATGTTGACAAACGAA 59.136 39.130 15.73 3.36 39.30 3.85
5932 6586 1.898574 GGTTGTCTGGTGGTGCAGG 60.899 63.158 0.00 0.00 0.00 4.85
5980 6634 1.070445 GGATGAGGTGATCAGGGCG 59.930 63.158 0.00 0.00 42.53 6.13
6039 6706 3.795488 GCCGAGAAGACTTTTTGTTTGGG 60.795 47.826 0.00 0.00 0.00 4.12
6078 6745 0.231790 CCGAGTACGTAGCGAGTAGC 59.768 60.000 16.67 0.00 41.43 3.58
6103 6771 1.250840 GGTGGGGTGGAATGCTTGAC 61.251 60.000 0.00 0.00 0.00 3.18
6187 6855 6.344500 TGGTGTTTGTATGCAGAATGTTTTT 58.656 32.000 0.00 0.00 39.31 1.94
6238 6908 2.534856 TTTGTGTGCGTGTGTGTGGC 62.535 55.000 0.00 0.00 0.00 5.01
6246 6916 1.502990 CGTGTGTGTGGCGATTGGAA 61.503 55.000 0.00 0.00 0.00 3.53
6293 6967 1.969208 AGTAGGGGCGTAATCTTAGGC 59.031 52.381 6.17 6.17 42.17 3.93
6295 6969 0.759346 AGGGGCGTAATCTTAGGCAG 59.241 55.000 14.44 0.00 44.04 4.85
6315 6989 4.074259 CAGACCTGGATTGATTCAACACA 58.926 43.478 0.00 3.25 0.00 3.72
6320 6994 5.305128 ACCTGGATTGATTCAACACACAAAT 59.695 36.000 0.00 0.00 0.00 2.32
6346 7020 8.464770 TGAAAAGATATGCTTGTATTTGTTGC 57.535 30.769 0.00 0.00 36.80 4.17
6347 7021 7.273164 TGAAAAGATATGCTTGTATTTGTTGCG 59.727 33.333 0.00 0.00 36.80 4.85
6348 7022 5.173774 AGATATGCTTGTATTTGTTGCGG 57.826 39.130 0.00 0.00 0.00 5.69
6350 7024 1.610363 TGCTTGTATTTGTTGCGGGA 58.390 45.000 0.00 0.00 0.00 5.14
6351 7025 1.539388 TGCTTGTATTTGTTGCGGGAG 59.461 47.619 0.00 0.00 0.00 4.30
6388 7064 1.375013 GGGTTCTTGCGCCGTAAGA 60.375 57.895 13.70 13.70 43.02 2.10
6389 7065 0.952010 GGGTTCTTGCGCCGTAAGAA 60.952 55.000 23.40 23.40 40.72 2.52
6407 7106 4.937201 AGAATTTGTTGTTTCCCCAGTC 57.063 40.909 0.00 0.00 0.00 3.51
6408 7107 3.641436 AGAATTTGTTGTTTCCCCAGTCC 59.359 43.478 0.00 0.00 0.00 3.85
6409 7108 1.394618 TTTGTTGTTTCCCCAGTCCG 58.605 50.000 0.00 0.00 0.00 4.79
6430 7129 3.451894 CGGTTACGGCCCGTAGGT 61.452 66.667 16.56 0.00 43.21 3.08
6431 7130 3.415808 CGGTTACGGCCCGTAGGTC 62.416 68.421 16.56 10.73 43.21 3.85
6442 7141 3.324170 CGTAGGTCGGTTACTGCAG 57.676 57.895 13.48 13.48 35.71 4.41
6443 7142 0.806868 CGTAGGTCGGTTACTGCAGA 59.193 55.000 23.35 0.48 35.71 4.26
6444 7143 1.200716 CGTAGGTCGGTTACTGCAGAA 59.799 52.381 23.35 7.64 35.71 3.02
6445 7144 2.352030 CGTAGGTCGGTTACTGCAGAAA 60.352 50.000 23.35 4.90 35.71 2.52
6446 7145 2.922740 AGGTCGGTTACTGCAGAAAA 57.077 45.000 23.35 11.47 0.00 2.29
6447 7146 2.767505 AGGTCGGTTACTGCAGAAAAG 58.232 47.619 23.35 7.64 0.00 2.27
6448 7147 2.367567 AGGTCGGTTACTGCAGAAAAGA 59.632 45.455 23.35 9.95 0.00 2.52
6449 7148 3.135994 GGTCGGTTACTGCAGAAAAGAA 58.864 45.455 23.35 3.25 0.00 2.52
6450 7149 3.562557 GGTCGGTTACTGCAGAAAAGAAA 59.437 43.478 23.35 1.65 0.00 2.52
6451 7150 4.524749 GTCGGTTACTGCAGAAAAGAAAC 58.475 43.478 23.35 13.16 0.00 2.78
6452 7151 3.246699 TCGGTTACTGCAGAAAAGAAACG 59.753 43.478 23.35 18.47 0.00 3.60
6453 7152 3.001939 CGGTTACTGCAGAAAAGAAACGT 59.998 43.478 23.35 0.00 0.00 3.99
6454 7153 4.524749 GGTTACTGCAGAAAAGAAACGTC 58.475 43.478 23.35 0.68 0.00 4.34
6455 7154 4.034742 GGTTACTGCAGAAAAGAAACGTCA 59.965 41.667 23.35 0.00 0.00 4.35
6456 7155 5.448089 GGTTACTGCAGAAAAGAAACGTCAA 60.448 40.000 23.35 0.00 0.00 3.18
6457 7156 4.016113 ACTGCAGAAAAGAAACGTCAAC 57.984 40.909 23.35 0.00 0.00 3.18
6494 7193 1.866601 GGCCTTGTGTGCATGTTTTTC 59.133 47.619 0.00 0.00 0.00 2.29
6541 7240 6.151985 TGTGGATGTAAACGGCAAGATAAAAT 59.848 34.615 0.00 0.00 0.00 1.82
6542 7241 7.033185 GTGGATGTAAACGGCAAGATAAAATT 58.967 34.615 0.00 0.00 0.00 1.82
6546 7245 6.616947 TGTAAACGGCAAGATAAAATTCAGG 58.383 36.000 0.00 0.00 0.00 3.86
6547 7246 3.782889 ACGGCAAGATAAAATTCAGGC 57.217 42.857 0.00 0.00 0.00 4.85
6576 7275 5.161943 AGGCCTGTTTAGTTTAGTTCGAT 57.838 39.130 3.11 0.00 0.00 3.59
6580 7279 8.648693 AGGCCTGTTTAGTTTAGTTCGATATAT 58.351 33.333 3.11 0.00 0.00 0.86
6581 7280 9.918630 GGCCTGTTTAGTTTAGTTCGATATATA 57.081 33.333 0.00 0.00 0.00 0.86
6621 7320 3.903467 AGAAACTTTCTTGAACTGGGCT 58.097 40.909 0.00 0.00 36.36 5.19
6622 7321 3.633986 AGAAACTTTCTTGAACTGGGCTG 59.366 43.478 0.00 0.00 36.36 4.85
6623 7322 3.297134 AACTTTCTTGAACTGGGCTGA 57.703 42.857 0.00 0.00 0.00 4.26
6626 7325 3.381590 ACTTTCTTGAACTGGGCTGAAAC 59.618 43.478 0.00 0.00 0.00 2.78
6628 7327 0.593128 CTTGAACTGGGCTGAAACCG 59.407 55.000 0.00 0.00 0.00 4.44
6685 7385 4.329545 AGCCCGCGCTTTTCCAGA 62.330 61.111 5.56 0.00 45.55 3.86
6704 7404 1.909532 GACTGTCGAAATACGGACGTG 59.090 52.381 7.73 0.00 42.82 4.49
6817 7527 1.213094 CGCGGTCGAACAAACAGACT 61.213 55.000 0.00 0.00 38.10 3.24
6819 7529 1.567504 CGGTCGAACAAACAGACTGT 58.432 50.000 1.07 1.07 36.73 3.55
6820 7530 2.734670 CGGTCGAACAAACAGACTGTA 58.265 47.619 8.91 0.00 36.73 2.74
6821 7531 3.314553 CGGTCGAACAAACAGACTGTAT 58.685 45.455 8.91 0.00 36.73 2.29
6822 7532 3.364023 CGGTCGAACAAACAGACTGTATC 59.636 47.826 8.91 4.75 36.73 2.24
6823 7533 3.678548 GGTCGAACAAACAGACTGTATCC 59.321 47.826 8.91 0.00 35.42 2.59
6824 7534 4.304110 GTCGAACAAACAGACTGTATCCA 58.696 43.478 8.91 0.00 32.58 3.41
6825 7535 4.150098 GTCGAACAAACAGACTGTATCCAC 59.850 45.833 8.91 1.24 32.58 4.02
6826 7536 3.432252 CGAACAAACAGACTGTATCCACC 59.568 47.826 8.91 0.00 0.00 4.61
6827 7537 4.385825 GAACAAACAGACTGTATCCACCA 58.614 43.478 8.91 0.00 0.00 4.17
6828 7538 3.740115 ACAAACAGACTGTATCCACCAC 58.260 45.455 8.91 0.00 0.00 4.16
6862 7575 5.277202 CGTGGAACATTGAGATTATGCTCTG 60.277 44.000 0.00 0.00 44.52 3.35
6875 7589 9.920133 GAGATTATGCTCTGACTATCAAATACA 57.080 33.333 0.00 0.00 32.16 2.29
6916 7630 8.877779 GTTGAGAGTAATAGTTACTACGACTCA 58.122 37.037 24.91 17.65 46.01 3.41
6925 7639 4.337555 AGTTACTACGACTCACACACAAGT 59.662 41.667 0.00 0.00 0.00 3.16
6980 7694 2.726180 GCATCGATCGACCGACCG 60.726 66.667 22.06 0.00 41.70 4.79
7011 7725 1.546476 GATTGGACGGCCGAGATATCT 59.454 52.381 35.90 7.12 36.79 1.98
7012 7726 0.673985 TTGGACGGCCGAGATATCTG 59.326 55.000 35.90 0.00 36.79 2.90
7013 7727 0.179001 TGGACGGCCGAGATATCTGA 60.179 55.000 35.90 6.51 36.79 3.27
7014 7728 1.178276 GGACGGCCGAGATATCTGAT 58.822 55.000 35.90 4.22 0.00 2.90
7015 7729 1.546476 GGACGGCCGAGATATCTGATT 59.454 52.381 35.90 3.54 0.00 2.57
7016 7730 2.028930 GGACGGCCGAGATATCTGATTT 60.029 50.000 35.90 3.27 0.00 2.17
7017 7731 3.246619 GACGGCCGAGATATCTGATTTC 58.753 50.000 35.90 10.29 0.00 2.17
7018 7732 2.894126 ACGGCCGAGATATCTGATTTCT 59.106 45.455 35.90 9.90 0.00 2.52
7061 7775 5.476945 GGCCAGAAAGAATAAAAGAGAACCA 59.523 40.000 0.00 0.00 0.00 3.67
7102 7895 1.002087 GGTGGAGACCAATCTGTTCGT 59.998 52.381 0.00 0.00 42.59 3.85
7146 7939 2.744202 CCACCATTTCTTCTTCCTCGTG 59.256 50.000 0.00 0.00 0.00 4.35
7176 7969 2.351336 ATCGACTCCAACGCGGATCC 62.351 60.000 12.47 0.00 45.19 3.36
7177 7970 2.202892 GACTCCAACGCGGATCCC 60.203 66.667 12.47 0.00 45.19 3.85
7178 7971 3.735037 GACTCCAACGCGGATCCCC 62.735 68.421 12.47 0.00 45.19 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.298989 TCTCTCTACTCATACAGGTCCTC 57.701 47.826 0.00 0.00 0.00 3.71
72 73 6.526566 AGTTCACGACAAAATAGTCAGTTC 57.473 37.500 0.00 0.00 38.43 3.01
73 74 8.603242 AATAGTTCACGACAAAATAGTCAGTT 57.397 30.769 0.00 0.00 38.43 3.16
74 75 8.603242 AAATAGTTCACGACAAAATAGTCAGT 57.397 30.769 0.00 0.00 38.43 3.41
75 76 8.708742 TGAAATAGTTCACGACAAAATAGTCAG 58.291 33.333 0.56 0.00 38.88 3.51
76 77 8.596271 TGAAATAGTTCACGACAAAATAGTCA 57.404 30.769 0.56 0.00 38.88 3.41
132 133 7.711772 TGAAATACGTCCACGGTTATTGAATAT 59.288 33.333 3.81 0.00 44.95 1.28
185 186 4.322539 GGTCGTCAACAAACAAAGTGTTTC 59.677 41.667 3.43 0.00 46.61 2.78
204 205 6.137794 AGAGATAGTCAAATACACAGGTCG 57.862 41.667 0.00 0.00 0.00 4.79
205 206 8.035394 TCAAAGAGATAGTCAAATACACAGGTC 58.965 37.037 0.00 0.00 0.00 3.85
206 207 7.907389 TCAAAGAGATAGTCAAATACACAGGT 58.093 34.615 0.00 0.00 0.00 4.00
209 210 9.591792 CTCATCAAAGAGATAGTCAAATACACA 57.408 33.333 0.00 0.00 37.87 3.72
242 249 3.446310 TTTTTGGAAGAAAGGGTTCGC 57.554 42.857 0.00 0.00 38.90 4.70
315 322 9.034544 GTTTCTTTAGATGAAGCACACAAAAAT 57.965 29.630 0.00 0.00 0.00 1.82
379 386 9.003112 CATCTAGTTTTAAAAGATGTTCATGCG 57.997 33.333 15.70 0.00 41.02 4.73
426 433 9.986833 GTTCTTGCAATTTTAAAAAGTGTTCAT 57.013 25.926 4.44 0.00 0.00 2.57
466 473 9.664826 GTTGTAAAACATTGTTAAAAAGTGTCG 57.335 29.630 1.76 0.00 0.00 4.35
469 476 9.471742 GCAGTTGTAAAACATTGTTAAAAAGTG 57.528 29.630 1.76 9.51 0.00 3.16
481 488 3.658757 AATGGCGCAGTTGTAAAACAT 57.341 38.095 10.83 0.00 0.00 2.71
489 496 3.423384 GCATGTTAAAAATGGCGCAGTTG 60.423 43.478 10.83 0.00 0.00 3.16
496 503 2.539476 CTCGGGCATGTTAAAAATGGC 58.461 47.619 14.35 14.35 46.79 4.40
532 539 8.514594 TCATCTTGGTATTTCAAGTTGTTCATC 58.485 33.333 2.11 0.00 43.25 2.92
541 548 7.138736 ACAAACGTTCATCTTGGTATTTCAAG 58.861 34.615 0.00 0.00 43.91 3.02
544 551 9.453325 TTTAACAAACGTTCATCTTGGTATTTC 57.547 29.630 0.00 0.00 0.00 2.17
561 568 4.688021 TGCCCATTCTGTGTTTAACAAAC 58.312 39.130 0.00 0.00 38.67 2.93
565 572 5.296748 ACAAATGCCCATTCTGTGTTTAAC 58.703 37.500 0.00 0.00 0.00 2.01
607 614 7.111353 GCAAAAGGCGTCATTTTGTATTTAA 57.889 32.000 21.55 0.00 45.27 1.52
667 680 8.917655 GGCTAAAGAAATTGTTTTACGCAATTA 58.082 29.630 4.07 0.00 43.30 1.40
669 682 7.116233 CAGGCTAAAGAAATTGTTTTACGCAAT 59.884 33.333 0.00 0.00 38.09 3.56
672 685 5.918576 ACAGGCTAAAGAAATTGTTTTACGC 59.081 36.000 0.00 0.00 0.00 4.42
695 708 4.150897 TGGCTGGTCAGTTTGGATATAC 57.849 45.455 0.00 0.00 0.00 1.47
705 718 1.487976 CCAGATACATGGCTGGTCAGT 59.512 52.381 18.23 0.00 45.21 3.41
715 728 4.122776 CGAAGAAAGGGTCCAGATACATG 58.877 47.826 0.00 0.00 0.00 3.21
719 732 2.184533 TGCGAAGAAAGGGTCCAGATA 58.815 47.619 0.00 0.00 0.00 1.98
722 735 1.604604 TTTGCGAAGAAAGGGTCCAG 58.395 50.000 0.00 0.00 0.00 3.86
749 765 6.657836 ATAAGTACTTCGAAAATGTTCCGG 57.342 37.500 12.39 0.00 0.00 5.14
786 802 9.589461 TTGTTTTCATTTTCCCCTTGTACTATA 57.411 29.630 0.00 0.00 0.00 1.31
787 803 8.485578 TTGTTTTCATTTTCCCCTTGTACTAT 57.514 30.769 0.00 0.00 0.00 2.12
788 804 7.899648 TTGTTTTCATTTTCCCCTTGTACTA 57.100 32.000 0.00 0.00 0.00 1.82
789 805 6.800072 TTGTTTTCATTTTCCCCTTGTACT 57.200 33.333 0.00 0.00 0.00 2.73
810 836 9.341899 CTTTATCGGTTTCTATTTCACCTTTTG 57.658 33.333 0.00 0.00 0.00 2.44
812 838 8.857694 TCTTTATCGGTTTCTATTTCACCTTT 57.142 30.769 0.00 0.00 0.00 3.11
844 871 4.990543 TCTTTCGACTTTGCAGTGTATG 57.009 40.909 0.00 0.00 31.22 2.39
851 878 1.295792 ACGCTTCTTTCGACTTTGCA 58.704 45.000 0.00 0.00 0.00 4.08
857 884 0.161024 CGGTCAACGCTTCTTTCGAC 59.839 55.000 0.00 0.00 34.82 4.20
859 886 1.491563 CCGGTCAACGCTTCTTTCG 59.508 57.895 0.00 0.00 42.52 3.46
860 887 1.866925 CCCGGTCAACGCTTCTTTC 59.133 57.895 0.00 0.00 42.52 2.62
864 891 4.699522 AGGCCCGGTCAACGCTTC 62.700 66.667 0.00 0.00 42.52 3.86
885 912 1.228184 GCAGGGGCTCTCCATCATG 60.228 63.158 0.00 0.00 37.22 3.07
889 916 3.415087 GGTGCAGGGGCTCTCCAT 61.415 66.667 0.00 0.00 41.91 3.41
986 1013 4.028490 TGCCAAGTAGCACCGGGG 62.028 66.667 6.32 0.84 38.00 5.73
992 1019 0.890542 CCTGCAAGTGCCAAGTAGCA 60.891 55.000 0.00 0.00 41.46 3.49
993 1020 0.890996 ACCTGCAAGTGCCAAGTAGC 60.891 55.000 0.00 0.00 41.18 3.58
995 1022 1.604604 GAACCTGCAAGTGCCAAGTA 58.395 50.000 0.00 0.00 41.18 2.24
996 1023 1.109323 GGAACCTGCAAGTGCCAAGT 61.109 55.000 7.69 0.00 41.18 3.16
997 1024 1.108727 TGGAACCTGCAAGTGCCAAG 61.109 55.000 13.20 0.00 42.91 3.61
998 1025 1.076412 TGGAACCTGCAAGTGCCAA 60.076 52.632 13.20 0.00 42.91 4.52
999 1026 0.685785 TTTGGAACCTGCAAGTGCCA 60.686 50.000 11.48 11.48 44.28 4.92
1000 1027 0.463620 TTTTGGAACCTGCAAGTGCC 59.536 50.000 5.39 5.39 41.18 5.01
1001 1028 1.570813 GTTTTGGAACCTGCAAGTGC 58.429 50.000 0.00 0.00 42.50 4.40
1061 1088 2.294078 GGGAGGGAGAGGTGTGTGG 61.294 68.421 0.00 0.00 0.00 4.17
1062 1089 2.294078 GGGGAGGGAGAGGTGTGTG 61.294 68.421 0.00 0.00 0.00 3.82
1063 1090 2.122954 GGGGAGGGAGAGGTGTGT 59.877 66.667 0.00 0.00 0.00 3.72
1071 1098 4.468689 GAAACGGCGGGGAGGGAG 62.469 72.222 13.24 0.00 0.00 4.30
1115 1142 4.889856 TGCGGATCGACATGGCGG 62.890 66.667 23.19 5.75 0.00 6.13
1327 1387 1.829222 CTACGCAAACCTAAGAGGGGA 59.171 52.381 0.00 0.00 40.58 4.81
1329 1389 1.742750 GCCTACGCAAACCTAAGAGGG 60.743 57.143 0.00 0.00 35.54 4.30
1332 1392 1.897133 TCTGCCTACGCAAACCTAAGA 59.103 47.619 0.00 0.00 46.66 2.10
1334 1394 3.267483 GAATCTGCCTACGCAAACCTAA 58.733 45.455 0.00 0.00 46.66 2.69
1536 1606 4.036734 CAGATTGTTAGCGTGGGCATTATT 59.963 41.667 0.00 0.00 43.41 1.40
1538 1608 2.942376 CAGATTGTTAGCGTGGGCATTA 59.058 45.455 0.00 0.00 43.41 1.90
1539 1609 1.745087 CAGATTGTTAGCGTGGGCATT 59.255 47.619 0.00 0.00 43.41 3.56
1541 1611 1.305219 GCAGATTGTTAGCGTGGGCA 61.305 55.000 0.00 0.00 43.41 5.36
1542 1612 1.026718 AGCAGATTGTTAGCGTGGGC 61.027 55.000 0.00 0.00 40.37 5.36
1543 1613 1.453155 AAGCAGATTGTTAGCGTGGG 58.547 50.000 0.00 0.00 0.00 4.61
1578 1649 2.493278 ACTTGATCCAATCGGCCAAAAG 59.507 45.455 2.24 0.00 0.00 2.27
1586 1658 2.128771 ACCCCAACTTGATCCAATCG 57.871 50.000 0.00 0.00 0.00 3.34
1687 1759 0.870393 AGCAAACATCACAGTCGCTG 59.130 50.000 5.47 5.47 37.52 5.18
1718 1791 2.813172 TGCGCATCACAGATCAAAGAAA 59.187 40.909 5.66 0.00 0.00 2.52
1822 1896 4.989277 AGCATGTATCATAAGGCCATTCA 58.011 39.130 5.01 0.00 0.00 2.57
1823 1897 5.251764 AGAGCATGTATCATAAGGCCATTC 58.748 41.667 5.01 0.00 0.00 2.67
1828 1909 3.681897 CGGAAGAGCATGTATCATAAGGC 59.318 47.826 0.00 0.00 0.00 4.35
1838 1919 1.827399 AACCGGACGGAAGAGCATGT 61.827 55.000 18.80 0.00 38.96 3.21
1972 2053 1.657751 GCTCCCCGATGAAAAGCACC 61.658 60.000 0.00 0.00 33.21 5.01
2043 2124 6.257994 TCATCAAAAGCAGATAAGAGGGAT 57.742 37.500 0.00 0.00 0.00 3.85
2071 2152 6.331845 TGCAACAACAACCATATCAATGATC 58.668 36.000 0.00 0.00 34.84 2.92
2076 2157 5.718724 TCATGCAACAACAACCATATCAA 57.281 34.783 0.00 0.00 0.00 2.57
2123 2208 3.067461 AGCTCTCGTAGATGCCTAAACAG 59.933 47.826 0.00 0.00 36.75 3.16
2138 2223 5.677612 CACGTTTAACTGTATAGAGCTCTCG 59.322 44.000 22.17 14.99 34.09 4.04
2178 2263 0.178944 GGCCAAAAAGGGGTACACCT 60.179 55.000 12.16 12.16 44.56 4.00
2243 2331 2.295885 CATGATCCCCAGCAGAAGAAC 58.704 52.381 0.00 0.00 0.00 3.01
2299 2387 6.663944 AAAGCAGACATTCGTAATCCTAAC 57.336 37.500 0.00 0.00 0.00 2.34
2342 2433 1.949525 AGGCACTTGTGTTCACATGTC 59.050 47.619 17.40 10.88 27.25 3.06
2349 2440 3.542712 CATGTGTAGGCACTTGTGTTC 57.457 47.619 2.61 0.00 45.44 3.18
2423 2524 7.335422 ACAGTCACATTCAAATATCTCAAGGAC 59.665 37.037 0.00 0.00 0.00 3.85
2476 2577 6.986817 TGCATTACTCTCTATCTTTAGTTGGC 59.013 38.462 0.00 0.00 0.00 4.52
2569 2673 5.178061 TGTTCAGAGCACAATATTGTCGAT 58.822 37.500 18.25 12.38 39.91 3.59
2571 2675 4.926860 TGTTCAGAGCACAATATTGTCG 57.073 40.909 18.25 14.19 39.91 4.35
2608 2712 5.181245 TCTTTTGGCTCTAATGTGTAGCAAC 59.819 40.000 0.00 0.00 38.01 4.17
2626 2730 9.366216 GCCCATATTTTTAAGGTTAGTCTTTTG 57.634 33.333 0.00 0.00 0.00 2.44
2633 2737 7.684428 GCAGAAGGCCCATATTTTTAAGGTTAG 60.684 40.741 0.00 0.00 36.11 2.34
2643 2747 3.677156 AAGAGCAGAAGGCCCATATTT 57.323 42.857 0.00 0.00 46.50 1.40
2644 2748 4.166919 AGTTAAGAGCAGAAGGCCCATATT 59.833 41.667 0.00 0.00 46.50 1.28
2663 2767 8.865001 GCAATTGTAACACTTTTTCACAAGTTA 58.135 29.630 7.40 0.00 34.60 2.24
2673 2777 4.805192 CAGCACTGCAATTGTAACACTTTT 59.195 37.500 7.40 0.00 0.00 2.27
2677 2781 3.354089 ACAGCACTGCAATTGTAACAC 57.646 42.857 7.40 0.00 0.00 3.32
2682 2786 3.806625 AAGAAACAGCACTGCAATTGT 57.193 38.095 7.40 0.00 0.00 2.71
2690 2798 4.706842 TTTCCCTCTAAGAAACAGCACT 57.293 40.909 0.00 0.00 0.00 4.40
2721 2829 4.331168 GCAAGAAGACAGCTACCATACAAG 59.669 45.833 0.00 0.00 0.00 3.16
2724 2832 4.130286 AGCAAGAAGACAGCTACCATAC 57.870 45.455 0.00 0.00 36.73 2.39
2734 2842 7.661536 ACTATGAACCTATAGCAAGAAGACA 57.338 36.000 0.00 0.00 34.67 3.41
2735 2843 9.465985 GTTACTATGAACCTATAGCAAGAAGAC 57.534 37.037 0.00 0.00 34.67 3.01
2736 2844 8.639761 GGTTACTATGAACCTATAGCAAGAAGA 58.360 37.037 0.00 0.00 44.75 2.87
2739 2847 6.015688 CCGGTTACTATGAACCTATAGCAAGA 60.016 42.308 0.00 0.00 45.80 3.02
2749 2857 6.990341 AATAACAACCGGTTACTATGAACC 57.010 37.500 21.79 0.00 44.36 3.62
2752 2860 6.314400 GCAGAAATAACAACCGGTTACTATGA 59.686 38.462 21.79 2.69 44.36 2.15
2762 2870 4.000988 AGTACCTGCAGAAATAACAACCG 58.999 43.478 17.39 0.00 0.00 4.44
2764 2872 6.183360 GGATGAGTACCTGCAGAAATAACAAC 60.183 42.308 17.39 6.85 0.00 3.32
2774 2882 0.179100 CCGTGGATGAGTACCTGCAG 60.179 60.000 6.78 6.78 0.00 4.41
2860 2969 3.374058 GGTTGATCACCGATAACAACTGG 59.626 47.826 0.00 0.00 40.08 4.00
2939 3048 8.855110 TGCAAAGAAAAATGGTGAAATAGAGTA 58.145 29.630 0.00 0.00 0.00 2.59
3048 3163 6.862209 ACATTACCGCATTCACAACAATATT 58.138 32.000 0.00 0.00 0.00 1.28
3083 3199 2.814336 GCCTCCAAAGGAAACACTGTAG 59.186 50.000 0.00 0.00 46.67 2.74
3574 3776 8.461222 TCTTATATTTGGTGCAGTCAAATTGAG 58.539 33.333 24.12 19.49 42.59 3.02
3652 3854 8.494016 AATAACATAAGCTGACTAAAGTCCAC 57.506 34.615 7.63 0.18 44.15 4.02
3757 3959 4.315803 AGCTTATGCGTCAGTTAAACAGT 58.684 39.130 0.00 0.00 45.42 3.55
3778 3980 4.698780 TCCTGCATTGATTTCACTGAGAAG 59.301 41.667 2.44 0.00 37.57 2.85
3961 4183 0.109272 TTTTCCAAACGCGCACACAA 60.109 45.000 5.73 0.00 0.00 3.33
3964 4186 0.101399 ACATTTTCCAAACGCGCACA 59.899 45.000 5.73 0.00 0.00 4.57
4072 4294 4.079253 CTCTAGCTAGGAGATCAAGGGAC 58.921 52.174 20.58 0.00 33.03 4.46
4141 4363 7.255590 CCAAACAGATCAAGGTTGAATGTAAGT 60.256 37.037 15.19 2.49 41.13 2.24
4176 4398 7.015098 TGGTGACACCATGAGACAAATTTTTAT 59.985 33.333 23.72 0.00 44.79 1.40
4290 4672 6.303970 GCCATCATTTGAAATATTGATCGTCG 59.696 38.462 0.00 0.00 0.00 5.12
4445 4827 0.984230 TCTCCATGTTCCTCCGCTTT 59.016 50.000 0.00 0.00 0.00 3.51
4919 5301 2.943033 AGCCAATACCCTTCGAAAATCG 59.057 45.455 0.00 0.00 42.10 3.34
4927 5309 5.445964 TCCTAATCAAAGCCAATACCCTTC 58.554 41.667 0.00 0.00 0.00 3.46
5113 5755 7.801716 TCAATTAGCATCAACACTATTACCC 57.198 36.000 0.00 0.00 0.00 3.69
5145 5792 9.503427 AACGCATGTAAGAAAATAATTAAGAGC 57.497 29.630 0.00 0.00 0.00 4.09
5175 5822 1.598130 AAGCAACCGGTCAGACAGC 60.598 57.895 8.04 5.75 0.00 4.40
5176 5823 0.532862 ACAAGCAACCGGTCAGACAG 60.533 55.000 8.04 0.00 0.00 3.51
5177 5824 0.813610 CACAAGCAACCGGTCAGACA 60.814 55.000 8.04 0.00 0.00 3.41
5178 5825 1.507141 CCACAAGCAACCGGTCAGAC 61.507 60.000 8.04 0.00 0.00 3.51
5179 5826 1.227823 CCACAAGCAACCGGTCAGA 60.228 57.895 8.04 0.00 0.00 3.27
5194 5841 5.119931 TGCGATAATAAAATGGATGCCAC 57.880 39.130 0.00 0.00 35.80 5.01
5249 5896 3.319122 AGTCAACCAAGATCCAAAGCAAC 59.681 43.478 0.00 0.00 0.00 4.17
5433 6080 2.039480 AGCACTGGCATACTGATATGGG 59.961 50.000 0.00 0.00 44.61 4.00
5449 6096 5.130350 TGTTAAGCTTCCAAAGTTAGCACT 58.870 37.500 0.00 0.00 37.37 4.40
5465 6112 1.234615 TGGGCTCGCTGTTGTTAAGC 61.235 55.000 0.00 0.00 37.31 3.09
5506 6153 1.069204 GGGATAACGAGCAGAGCATCA 59.931 52.381 0.00 0.00 37.82 3.07
5515 6162 1.152383 GCGTCTTGGGGATAACGAGC 61.152 60.000 0.00 0.00 37.31 5.03
5539 6186 3.306849 GGGTATCTAAGCCCGAATTCTCC 60.307 52.174 3.52 0.00 40.09 3.71
5588 6235 2.543777 ATACAACAAGTGGACGTGCT 57.456 45.000 8.99 0.00 0.00 4.40
5591 6238 7.094933 GGAAAAGATAATACAACAAGTGGACGT 60.095 37.037 0.00 0.00 0.00 4.34
5593 6240 8.336801 AGGAAAAGATAATACAACAAGTGGAC 57.663 34.615 0.00 0.00 0.00 4.02
5609 6256 4.646492 ACAACAGAAGTGCAAGGAAAAGAT 59.354 37.500 0.00 0.00 0.00 2.40
5611 6258 4.096984 AGACAACAGAAGTGCAAGGAAAAG 59.903 41.667 0.00 0.00 0.00 2.27
5613 6260 3.620488 AGACAACAGAAGTGCAAGGAAA 58.380 40.909 0.00 0.00 0.00 3.13
5686 6333 3.120889 CGTGCTCATTCTGTTGTACAGTG 60.121 47.826 6.71 0.00 46.03 3.66
5773 6420 6.238676 GCTTCACCGAGTAGTTGTCATAGATA 60.239 42.308 0.00 0.00 0.00 1.98
5779 6426 1.335597 CGCTTCACCGAGTAGTTGTCA 60.336 52.381 0.00 0.00 0.00 3.58
5812 6459 3.132289 ACTGTATTGTCACATACCCCGAG 59.868 47.826 0.00 0.00 0.00 4.63
5815 6462 4.216411 ACACTGTATTGTCACATACCCC 57.784 45.455 0.00 0.00 0.00 4.95
5895 6547 4.712122 ACCAAAGTTCGTTTGTCAACAT 57.288 36.364 0.00 0.00 43.68 2.71
5908 6562 2.099405 CACCACCAGACAACCAAAGTT 58.901 47.619 0.00 0.00 36.33 2.66
5909 6563 1.762708 CACCACCAGACAACCAAAGT 58.237 50.000 0.00 0.00 0.00 2.66
5980 6634 1.976474 TTTCCTCATGTTGCGCCCC 60.976 57.895 4.18 0.00 0.00 5.80
6039 6706 1.067060 GCACCCCACAGAGAAAAACAC 59.933 52.381 0.00 0.00 0.00 3.32
6078 6745 1.031571 CATTCCACCCCACCACATCG 61.032 60.000 0.00 0.00 0.00 3.84
6103 6771 7.095187 GGTTGTTACAAGTACAATCTCTTCCAG 60.095 40.741 0.00 0.00 37.77 3.86
6147 6815 2.563179 ACACCAGCGTAGAAACAGATCT 59.437 45.455 0.00 0.00 0.00 2.75
6148 6816 2.960819 ACACCAGCGTAGAAACAGATC 58.039 47.619 0.00 0.00 0.00 2.75
6151 6819 2.612212 ACAAACACCAGCGTAGAAACAG 59.388 45.455 0.00 0.00 0.00 3.16
6187 6855 2.880268 CTGCTCAACTTGATCCAACACA 59.120 45.455 0.00 0.00 0.00 3.72
6231 6901 2.890311 AGAAAATTCCAATCGCCACACA 59.110 40.909 0.00 0.00 0.00 3.72
6234 6904 3.575965 ACAGAAAATTCCAATCGCCAC 57.424 42.857 0.00 0.00 0.00 5.01
6238 6908 4.797471 TGCTCAACAGAAAATTCCAATCG 58.203 39.130 0.00 0.00 0.00 3.34
6246 6916 3.986277 CAGGCTTTGCTCAACAGAAAAT 58.014 40.909 0.00 0.00 0.00 1.82
6283 6957 4.968719 TCAATCCAGGTCTGCCTAAGATTA 59.031 41.667 9.38 0.81 44.97 1.75
6293 6967 4.074259 TGTGTTGAATCAATCCAGGTCTG 58.926 43.478 0.00 0.00 0.00 3.51
6295 6969 3.820467 TGTGTGTTGAATCAATCCAGGTC 59.180 43.478 0.00 0.00 0.00 3.85
6320 6994 8.924691 GCAACAAATACAAGCATATCTTTTCAA 58.075 29.630 0.00 0.00 31.27 2.69
6344 7018 2.973899 GAGACTCTTGCTCCCGCA 59.026 61.111 0.00 0.00 46.24 5.69
6345 7019 2.202676 CGAGACTCTTGCTCCCGC 60.203 66.667 0.03 0.00 0.00 6.13
6346 7020 1.137825 GACGAGACTCTTGCTCCCG 59.862 63.158 0.03 0.00 0.00 5.14
6347 7021 1.137825 CGACGAGACTCTTGCTCCC 59.862 63.158 0.03 0.00 0.00 4.30
6348 7022 0.241481 AACGACGAGACTCTTGCTCC 59.759 55.000 0.00 0.00 0.00 4.70
6350 7024 2.128035 CAAAACGACGAGACTCTTGCT 58.872 47.619 0.00 0.00 0.00 3.91
6351 7025 1.192534 CCAAAACGACGAGACTCTTGC 59.807 52.381 0.00 0.00 0.00 4.01
6352 7026 1.792949 CCCAAAACGACGAGACTCTTG 59.207 52.381 0.00 0.00 0.00 3.02
6353 7027 1.411612 ACCCAAAACGACGAGACTCTT 59.588 47.619 0.00 0.00 0.00 2.85
6355 7029 1.791204 GAACCCAAAACGACGAGACTC 59.209 52.381 0.00 0.00 0.00 3.36
6356 7030 1.411612 AGAACCCAAAACGACGAGACT 59.588 47.619 0.00 0.00 0.00 3.24
6388 7064 2.364002 CGGACTGGGGAAACAACAAATT 59.636 45.455 0.00 0.00 0.00 1.82
6389 7065 1.960689 CGGACTGGGGAAACAACAAAT 59.039 47.619 0.00 0.00 0.00 2.32
6414 7113 2.496341 GACCTACGGGCCGTAACC 59.504 66.667 35.43 23.61 41.82 2.85
6415 7114 2.102946 CGACCTACGGGCCGTAAC 59.897 66.667 35.43 26.68 41.82 2.50
6425 7124 3.308438 TTTCTGCAGTAACCGACCTAC 57.692 47.619 14.67 0.00 0.00 3.18
6426 7125 3.575256 TCTTTTCTGCAGTAACCGACCTA 59.425 43.478 14.67 0.00 0.00 3.08
6428 7127 2.762745 TCTTTTCTGCAGTAACCGACC 58.237 47.619 14.67 0.00 0.00 4.79
6429 7128 4.524749 GTTTCTTTTCTGCAGTAACCGAC 58.475 43.478 14.67 3.36 0.00 4.79
6430 7129 3.246699 CGTTTCTTTTCTGCAGTAACCGA 59.753 43.478 14.67 6.86 0.00 4.69
6431 7130 3.001939 ACGTTTCTTTTCTGCAGTAACCG 59.998 43.478 14.67 9.53 0.00 4.44
6432 7131 4.034742 TGACGTTTCTTTTCTGCAGTAACC 59.965 41.667 14.67 0.00 0.00 2.85
6433 7132 5.151632 TGACGTTTCTTTTCTGCAGTAAC 57.848 39.130 14.67 8.61 0.00 2.50
6434 7133 5.353123 AGTTGACGTTTCTTTTCTGCAGTAA 59.647 36.000 14.67 7.78 0.00 2.24
6435 7134 4.873827 AGTTGACGTTTCTTTTCTGCAGTA 59.126 37.500 14.67 0.00 0.00 2.74
6436 7135 3.689649 AGTTGACGTTTCTTTTCTGCAGT 59.310 39.130 14.67 0.00 0.00 4.40
6437 7136 4.031028 CAGTTGACGTTTCTTTTCTGCAG 58.969 43.478 7.63 7.63 0.00 4.41
6438 7137 3.687212 TCAGTTGACGTTTCTTTTCTGCA 59.313 39.130 0.00 0.00 0.00 4.41
6439 7138 4.273005 TCAGTTGACGTTTCTTTTCTGC 57.727 40.909 0.00 0.00 0.00 4.26
6440 7139 8.023050 AGATATCAGTTGACGTTTCTTTTCTG 57.977 34.615 5.32 0.00 0.00 3.02
6441 7140 8.608844 AAGATATCAGTTGACGTTTCTTTTCT 57.391 30.769 5.32 0.00 0.00 2.52
6442 7141 9.107367 CAAAGATATCAGTTGACGTTTCTTTTC 57.893 33.333 11.78 0.00 0.00 2.29
6443 7142 7.591426 GCAAAGATATCAGTTGACGTTTCTTTT 59.409 33.333 18.43 0.00 0.00 2.27
6444 7143 7.041098 AGCAAAGATATCAGTTGACGTTTCTTT 60.041 33.333 18.43 0.00 0.00 2.52
6445 7144 6.428159 AGCAAAGATATCAGTTGACGTTTCTT 59.572 34.615 18.43 0.00 0.00 2.52
6446 7145 5.934625 AGCAAAGATATCAGTTGACGTTTCT 59.065 36.000 18.43 6.27 0.00 2.52
6447 7146 6.017933 CAGCAAAGATATCAGTTGACGTTTC 58.982 40.000 18.43 4.59 0.00 2.78
6448 7147 5.470098 ACAGCAAAGATATCAGTTGACGTTT 59.530 36.000 18.43 1.13 0.00 3.60
6449 7148 4.997395 ACAGCAAAGATATCAGTTGACGTT 59.003 37.500 18.43 0.00 0.00 3.99
6450 7149 4.569943 ACAGCAAAGATATCAGTTGACGT 58.430 39.130 18.43 12.55 0.00 4.34
6451 7150 4.259570 CGACAGCAAAGATATCAGTTGACG 60.260 45.833 18.43 15.50 0.00 4.35
6452 7151 4.033358 CCGACAGCAAAGATATCAGTTGAC 59.967 45.833 18.43 11.67 0.00 3.18
6453 7152 4.183865 CCGACAGCAAAGATATCAGTTGA 58.816 43.478 18.43 0.00 0.00 3.18
6454 7153 3.242543 GCCGACAGCAAAGATATCAGTTG 60.243 47.826 5.32 9.75 42.97 3.16
6455 7154 2.939103 GCCGACAGCAAAGATATCAGTT 59.061 45.455 5.32 0.00 42.97 3.16
6456 7155 2.555199 GCCGACAGCAAAGATATCAGT 58.445 47.619 5.32 0.00 42.97 3.41
6457 7156 1.869767 GGCCGACAGCAAAGATATCAG 59.130 52.381 5.32 0.00 46.50 2.90
6494 7193 5.296035 ACACAAGGGTTTCTACTCGAAAAAG 59.704 40.000 0.00 0.00 42.87 2.27
6609 7308 0.593128 CGGTTTCAGCCCAGTTCAAG 59.407 55.000 0.00 0.00 0.00 3.02
6617 7316 0.591659 GTTCAAGTCGGTTTCAGCCC 59.408 55.000 0.00 0.00 0.00 5.19
6685 7385 1.536766 TCACGTCCGTATTTCGACAGT 59.463 47.619 0.00 0.00 42.86 3.55
6738 7448 3.005554 CAGTGGGCAGACAAAGATACTG 58.994 50.000 0.00 0.00 35.14 2.74
6740 7450 3.059352 ACAGTGGGCAGACAAAGATAC 57.941 47.619 0.00 0.00 0.00 2.24
6741 7451 5.435686 AATACAGTGGGCAGACAAAGATA 57.564 39.130 0.00 0.00 0.00 1.98
6742 7452 4.307032 AATACAGTGGGCAGACAAAGAT 57.693 40.909 0.00 0.00 0.00 2.40
6743 7453 3.788227 AATACAGTGGGCAGACAAAGA 57.212 42.857 0.00 0.00 0.00 2.52
6746 7456 3.146066 GTGAAATACAGTGGGCAGACAA 58.854 45.455 0.00 0.00 0.00 3.18
6747 7457 2.552155 GGTGAAATACAGTGGGCAGACA 60.552 50.000 0.00 0.00 0.00 3.41
6748 7458 2.084546 GGTGAAATACAGTGGGCAGAC 58.915 52.381 0.00 0.00 0.00 3.51
6749 7459 1.004277 GGGTGAAATACAGTGGGCAGA 59.996 52.381 0.00 0.00 0.00 4.26
6750 7460 1.463674 GGGTGAAATACAGTGGGCAG 58.536 55.000 0.00 0.00 0.00 4.85
6751 7461 0.322098 CGGGTGAAATACAGTGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
6783 7493 0.644843 CCGCGCCAAATAAAATGTGC 59.355 50.000 0.00 0.00 0.00 4.57
6817 7527 2.868725 GCAGGATGGGTGGTGGATACA 61.869 57.143 0.00 0.00 40.85 2.29
6819 7529 1.352622 GGCAGGATGGGTGGTGGATA 61.353 60.000 0.00 0.00 35.86 2.59
6820 7530 2.693871 GGCAGGATGGGTGGTGGAT 61.694 63.158 0.00 0.00 35.86 3.41
6821 7531 3.338250 GGCAGGATGGGTGGTGGA 61.338 66.667 0.00 0.00 35.86 4.02
6822 7532 4.802051 CGGCAGGATGGGTGGTGG 62.802 72.222 0.00 0.00 35.86 4.61
6823 7533 4.033776 ACGGCAGGATGGGTGGTG 62.034 66.667 0.00 0.00 35.86 4.17
6824 7534 4.033776 CACGGCAGGATGGGTGGT 62.034 66.667 0.00 0.00 35.86 4.16
6825 7535 4.802051 CCACGGCAGGATGGGTGG 62.802 72.222 0.00 0.00 43.41 4.61
6826 7536 3.266686 TTCCACGGCAGGATGGGTG 62.267 63.158 0.00 0.00 37.56 4.61
6827 7537 2.933287 TTCCACGGCAGGATGGGT 60.933 61.111 0.00 0.00 37.56 4.51
6828 7538 2.438434 GTTCCACGGCAGGATGGG 60.438 66.667 0.00 0.00 37.56 4.00
6903 7617 4.440103 CACTTGTGTGTGAGTCGTAGTAAC 59.560 45.833 0.00 0.00 40.12 2.50
6925 7639 2.664851 ACGGTCGGTCGACGTACA 60.665 61.111 17.45 0.00 45.41 2.90
6980 7694 3.185797 GGCCGTCCAATCAATTACGATAC 59.814 47.826 0.00 0.00 37.53 2.24
7011 7725 6.653526 TTGCCTTTTCAGAATCAGAAATCA 57.346 33.333 1.72 0.00 35.17 2.57
7012 7726 6.088616 CGTTTGCCTTTTCAGAATCAGAAATC 59.911 38.462 1.72 0.00 35.17 2.17
7013 7727 5.922544 CGTTTGCCTTTTCAGAATCAGAAAT 59.077 36.000 1.72 0.00 35.17 2.17
7014 7728 5.280945 CGTTTGCCTTTTCAGAATCAGAAA 58.719 37.500 0.00 0.00 33.48 2.52
7015 7729 4.261572 CCGTTTGCCTTTTCAGAATCAGAA 60.262 41.667 0.00 0.00 0.00 3.02
7016 7730 3.253188 CCGTTTGCCTTTTCAGAATCAGA 59.747 43.478 0.00 0.00 0.00 3.27
7017 7731 3.568538 CCGTTTGCCTTTTCAGAATCAG 58.431 45.455 0.00 0.00 0.00 2.90
7018 7732 2.288152 GCCGTTTGCCTTTTCAGAATCA 60.288 45.455 0.00 0.00 0.00 2.57
7041 7755 9.579932 AGTGATTGGTTCTCTTTTATTCTTTCT 57.420 29.630 0.00 0.00 0.00 2.52
7116 7909 4.792068 AGAAGAAATGGTGGTTGACTTGA 58.208 39.130 0.00 0.00 0.00 3.02
7117 7910 5.507985 GGAAGAAGAAATGGTGGTTGACTTG 60.508 44.000 0.00 0.00 0.00 3.16
7118 7911 4.584743 GGAAGAAGAAATGGTGGTTGACTT 59.415 41.667 0.00 0.00 0.00 3.01
7119 7912 4.141158 AGGAAGAAGAAATGGTGGTTGACT 60.141 41.667 0.00 0.00 0.00 3.41
7120 7913 4.145052 AGGAAGAAGAAATGGTGGTTGAC 58.855 43.478 0.00 0.00 0.00 3.18
7121 7914 4.398319 GAGGAAGAAGAAATGGTGGTTGA 58.602 43.478 0.00 0.00 0.00 3.18
7146 7939 0.095417 GGAGTCGATGCGCTTCAAAC 59.905 55.000 21.52 17.62 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.