Multiple sequence alignment - TraesCS6D01G382900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G382900 chr6D 100.000 3290 0 0 1 3290 462353219 462356508 0.000000e+00 6076.0
1 TraesCS6D01G382900 chr6D 93.439 442 19 3 1865 2305 462362796 462363228 0.000000e+00 647.0
2 TraesCS6D01G382900 chr6D 83.784 703 64 23 2609 3290 462363568 462364241 3.610000e-174 621.0
3 TraesCS6D01G382900 chr6D 79.715 631 119 9 62 688 2900000 2900625 6.480000e-122 448.0
4 TraesCS6D01G382900 chr6D 95.789 190 8 0 1643 1832 462362605 462362794 1.150000e-79 307.0
5 TraesCS6D01G382900 chr6D 93.333 105 5 2 2498 2602 462363226 462363328 1.580000e-33 154.0
6 TraesCS6D01G382900 chr6D 81.818 110 19 1 2929 3038 316320430 316320322 1.260000e-14 91.6
7 TraesCS6D01G382900 chr6A 91.791 1340 71 16 755 2086 609149959 609148651 0.000000e+00 1829.0
8 TraesCS6D01G382900 chr6B 90.745 1329 78 21 755 2082 704833371 704832087 0.000000e+00 1731.0
9 TraesCS6D01G382900 chr3A 81.269 1009 149 24 1104 2074 701211244 701210238 0.000000e+00 780.0
10 TraesCS6D01G382900 chr3A 92.638 163 10 2 2307 2468 28607789 28607628 1.970000e-57 233.0
11 TraesCS6D01G382900 chr3A 88.050 159 15 4 2307 2462 65741429 65741586 5.610000e-43 185.0
12 TraesCS6D01G382900 chr3A 93.617 47 1 2 2415 2461 495017763 495017807 5.890000e-08 69.4
13 TraesCS6D01G382900 chr3A 96.875 32 1 0 2493 2524 724564661 724564630 2.000000e-03 54.7
14 TraesCS6D01G382900 chr7D 81.207 729 79 26 2609 3289 41380150 41380868 4.830000e-148 534.0
15 TraesCS6D01G382900 chr7D 80.906 508 91 6 72 575 509561642 509561137 2.380000e-106 396.0
16 TraesCS6D01G382900 chr7D 95.349 43 2 0 2413 2455 4186018 4186060 5.890000e-08 69.4
17 TraesCS6D01G382900 chr3B 81.104 598 99 10 72 665 650808467 650809054 1.790000e-127 466.0
18 TraesCS6D01G382900 chr7B 79.839 620 114 7 72 682 663742292 663742909 3.010000e-120 442.0
19 TraesCS6D01G382900 chr7B 85.870 92 12 1 2990 3080 603672246 603672337 2.700000e-16 97.1
20 TraesCS6D01G382900 chr7B 84.783 92 12 2 2990 3080 79376901 79376991 1.260000e-14 91.6
21 TraesCS6D01G382900 chr7B 83.516 91 13 2 2990 3079 99995926 99995837 2.100000e-12 84.2
22 TraesCS6D01G382900 chr7B 90.769 65 2 4 1525 1589 692346474 692346534 2.100000e-12 84.2
23 TraesCS6D01G382900 chr1D 79.426 627 119 6 65 687 311755778 311755158 5.040000e-118 435.0
24 TraesCS6D01G382900 chr1D 88.000 150 16 2 2319 2466 6246326 6246177 3.370000e-40 176.0
25 TraesCS6D01G382900 chr5D 78.965 599 120 4 77 670 348500050 348499453 1.420000e-108 403.0
26 TraesCS6D01G382900 chr5D 78.500 600 122 7 92 687 519436730 519437326 1.430000e-103 387.0
27 TraesCS6D01G382900 chr7A 79.268 574 117 2 88 660 694020696 694020124 1.840000e-107 399.0
28 TraesCS6D01G382900 chr4D 81.091 550 60 22 2776 3289 55718028 55717487 1.840000e-107 399.0
29 TraesCS6D01G382900 chr4D 77.244 312 41 20 2785 3073 496277093 496277397 4.400000e-34 156.0
30 TraesCS6D01G382900 chr4B 77.961 608 122 10 87 687 15432748 15432146 1.440000e-98 370.0
31 TraesCS6D01G382900 chr4B 81.720 93 15 2 2990 3080 647705972 647705880 3.520000e-10 76.8
32 TraesCS6D01G382900 chr2D 75.063 790 165 22 1115 1899 12872894 12872132 4.070000e-89 339.0
33 TraesCS6D01G382900 chr2B 74.495 792 165 23 1115 1898 23550663 23549901 3.190000e-80 309.0
34 TraesCS6D01G382900 chr2B 81.944 216 23 5 2777 2978 636761631 636761844 5.650000e-38 169.0
35 TraesCS6D01G382900 chr2B 80.930 215 26 5 2777 2976 711869953 711870167 4.400000e-34 156.0
36 TraesCS6D01G382900 chr2B 89.524 105 11 0 3176 3280 752460723 752460827 2.060000e-27 134.0
37 TraesCS6D01G382900 chr1B 90.244 164 14 2 2307 2468 94634585 94634748 2.570000e-51 213.0
38 TraesCS6D01G382900 chr1B 76.877 333 51 13 2687 3004 557394210 557394531 7.300000e-37 165.0
39 TraesCS6D01G382900 chr1B 80.444 225 28 7 2767 2976 679725367 679725590 1.220000e-34 158.0
40 TraesCS6D01G382900 chr1B 78.037 214 33 6 2777 2976 535692254 535692467 4.460000e-24 122.0
41 TraesCS6D01G382900 chr1B 86.957 92 9 3 2990 3080 169027296 169027385 2.090000e-17 100.0
42 TraesCS6D01G382900 chr1A 93.525 139 8 1 2332 2469 359691926 359691788 4.300000e-49 206.0
43 TraesCS6D01G382900 chr1A 86.957 92 10 2 2990 3080 576294630 576294540 5.810000e-18 102.0
44 TraesCS6D01G382900 chr2A 77.451 306 46 16 2677 2964 678607391 678607691 9.450000e-36 161.0
45 TraesCS6D01G382900 chr4A 79.618 157 23 7 2320 2469 274773007 274772853 1.610000e-18 104.0
46 TraesCS6D01G382900 chr3D 86.957 92 10 2 2990 3080 49497456 49497366 5.810000e-18 102.0
47 TraesCS6D01G382900 chr3D 78.049 164 27 9 2307 2465 608547214 608547055 9.720000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G382900 chr6D 462353219 462356508 3289 False 6076.00 6076 100.00000 1 3290 1 chr6D.!!$F2 3289
1 TraesCS6D01G382900 chr6D 2900000 2900625 625 False 448.00 448 79.71500 62 688 1 chr6D.!!$F1 626
2 TraesCS6D01G382900 chr6D 462362605 462364241 1636 False 432.25 647 91.58625 1643 3290 4 chr6D.!!$F3 1647
3 TraesCS6D01G382900 chr6A 609148651 609149959 1308 True 1829.00 1829 91.79100 755 2086 1 chr6A.!!$R1 1331
4 TraesCS6D01G382900 chr6B 704832087 704833371 1284 True 1731.00 1731 90.74500 755 2082 1 chr6B.!!$R1 1327
5 TraesCS6D01G382900 chr3A 701210238 701211244 1006 True 780.00 780 81.26900 1104 2074 1 chr3A.!!$R2 970
6 TraesCS6D01G382900 chr7D 41380150 41380868 718 False 534.00 534 81.20700 2609 3289 1 chr7D.!!$F2 680
7 TraesCS6D01G382900 chr7D 509561137 509561642 505 True 396.00 396 80.90600 72 575 1 chr7D.!!$R1 503
8 TraesCS6D01G382900 chr3B 650808467 650809054 587 False 466.00 466 81.10400 72 665 1 chr3B.!!$F1 593
9 TraesCS6D01G382900 chr7B 663742292 663742909 617 False 442.00 442 79.83900 72 682 1 chr7B.!!$F3 610
10 TraesCS6D01G382900 chr1D 311755158 311755778 620 True 435.00 435 79.42600 65 687 1 chr1D.!!$R2 622
11 TraesCS6D01G382900 chr5D 348499453 348500050 597 True 403.00 403 78.96500 77 670 1 chr5D.!!$R1 593
12 TraesCS6D01G382900 chr5D 519436730 519437326 596 False 387.00 387 78.50000 92 687 1 chr5D.!!$F1 595
13 TraesCS6D01G382900 chr7A 694020124 694020696 572 True 399.00 399 79.26800 88 660 1 chr7A.!!$R1 572
14 TraesCS6D01G382900 chr4D 55717487 55718028 541 True 399.00 399 81.09100 2776 3289 1 chr4D.!!$R1 513
15 TraesCS6D01G382900 chr4B 15432146 15432748 602 True 370.00 370 77.96100 87 687 1 chr4B.!!$R1 600
16 TraesCS6D01G382900 chr2D 12872132 12872894 762 True 339.00 339 75.06300 1115 1899 1 chr2D.!!$R1 784
17 TraesCS6D01G382900 chr2B 23549901 23550663 762 True 309.00 309 74.49500 1115 1898 1 chr2B.!!$R1 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 893 0.030908 CGTAGCTAGCTAGGCACCAC 59.969 60.0 26.49 14.89 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 2523 0.037303 CTTGCCCTGGCTCTCTTGAA 59.963 55.0 9.97 0.0 42.51 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.663944 GAATATGTACTTGGGTCAACTCAC 57.336 41.667 0.00 0.00 0.00 3.51
24 25 2.519377 TGTACTTGGGTCAACTCACG 57.481 50.000 0.00 0.00 0.00 4.35
25 26 1.758280 TGTACTTGGGTCAACTCACGT 59.242 47.619 0.00 0.00 0.00 4.49
26 27 2.168936 TGTACTTGGGTCAACTCACGTT 59.831 45.455 0.00 0.00 0.00 3.99
35 36 2.753989 CAACTCACGTTGCATGTGAA 57.246 45.000 19.19 7.35 42.90 3.18
36 37 2.642995 CAACTCACGTTGCATGTGAAG 58.357 47.619 19.19 15.65 42.90 3.02
37 38 2.238942 ACTCACGTTGCATGTGAAGA 57.761 45.000 19.19 2.63 42.90 2.87
38 39 1.867233 ACTCACGTTGCATGTGAAGAC 59.133 47.619 19.19 0.00 42.90 3.01
39 40 2.138320 CTCACGTTGCATGTGAAGACT 58.862 47.619 19.19 0.00 42.90 3.24
40 41 1.866601 TCACGTTGCATGTGAAGACTG 59.133 47.619 17.17 0.00 40.82 3.51
41 42 1.866601 CACGTTGCATGTGAAGACTGA 59.133 47.619 12.87 0.00 37.29 3.41
42 43 2.287644 CACGTTGCATGTGAAGACTGAA 59.712 45.455 12.87 0.00 37.29 3.02
43 44 2.942376 ACGTTGCATGTGAAGACTGAAA 59.058 40.909 0.00 0.00 0.00 2.69
44 45 3.002656 ACGTTGCATGTGAAGACTGAAAG 59.997 43.478 0.00 0.00 42.29 2.62
45 46 7.425996 CACGTTGCATGTGAAGACTGAAAGT 62.426 44.000 12.87 0.00 44.00 2.66
46 47 8.146068 CACGTTGCATGTGAAGACTGAAAGTA 62.146 42.308 12.87 0.00 42.23 2.24
47 48 9.362314 CACGTTGCATGTGAAGACTGAAAGTAT 62.362 40.741 12.87 0.00 42.23 2.12
63 64 8.886816 CTGAAAGTATTCTTGTACATTGCTTC 57.113 34.615 0.00 0.00 36.48 3.86
159 164 1.488812 TGGAGATTCCAATACCACCGG 59.511 52.381 0.00 0.00 45.00 5.28
232 237 1.142748 CTACCGGAGCTGGCTTGAG 59.857 63.158 9.46 0.00 0.00 3.02
279 284 2.297895 TGCACGTGCCCCTAAGGAT 61.298 57.895 35.72 0.00 41.18 3.24
287 292 2.443394 CCCCTAAGGATCAGCGCCA 61.443 63.158 2.29 0.00 38.24 5.69
290 295 0.107456 CCTAAGGATCAGCGCCATGT 59.893 55.000 2.29 0.00 0.00 3.21
293 298 1.959042 AAGGATCAGCGCCATGTAAG 58.041 50.000 2.29 0.00 0.00 2.34
294 305 0.833287 AGGATCAGCGCCATGTAAGT 59.167 50.000 2.29 0.00 0.00 2.24
296 307 1.656652 GATCAGCGCCATGTAAGTGT 58.343 50.000 2.29 0.00 0.00 3.55
347 359 5.042463 TCTGAAACACCTGACACCAAATA 57.958 39.130 0.00 0.00 0.00 1.40
359 371 3.088532 ACACCAAATATTGCCACACGAT 58.911 40.909 0.00 0.00 0.00 3.73
360 372 3.509575 ACACCAAATATTGCCACACGATT 59.490 39.130 0.00 0.00 0.00 3.34
361 373 4.021544 ACACCAAATATTGCCACACGATTT 60.022 37.500 0.00 0.00 0.00 2.17
366 378 6.183360 CCAAATATTGCCACACGATTTGAAAG 60.183 38.462 11.95 0.00 38.99 2.62
374 386 3.252215 CACACGATTTGAAAGCCTAACCA 59.748 43.478 0.00 0.00 0.00 3.67
375 387 3.502211 ACACGATTTGAAAGCCTAACCAG 59.498 43.478 0.00 0.00 0.00 4.00
394 406 0.250513 GACTGCCCCAAGAAGACGAT 59.749 55.000 0.00 0.00 0.00 3.73
461 473 1.816835 TCGAGTACGATTGAAGCCTGT 59.183 47.619 0.00 0.00 43.81 4.00
469 481 3.997021 ACGATTGAAGCCTGTAAGACAAG 59.003 43.478 0.00 0.00 34.07 3.16
479 491 4.307432 CCTGTAAGACAAGCTCGAAGAAA 58.693 43.478 0.00 0.00 34.07 2.52
543 559 8.811017 ACTAGAAAACCCTAACCTAAACTACTC 58.189 37.037 0.00 0.00 0.00 2.59
561 577 2.037367 ACTAGAGCGGAGGCACCA 59.963 61.111 0.94 0.00 43.41 4.17
577 597 0.348370 ACCAGGATTCTCCTCCCCAT 59.652 55.000 0.00 0.00 45.66 4.00
582 602 0.767998 GATTCTCCTCCCCATCACCC 59.232 60.000 0.00 0.00 0.00 4.61
593 613 2.680352 ATCACCCGCCGTCTGAGT 60.680 61.111 0.00 0.00 0.00 3.41
605 625 1.228988 TCTGAGTGGCAGGCAGAGA 60.229 57.895 13.45 0.00 44.98 3.10
623 643 3.782443 GGAGGCGAATCCACGGGT 61.782 66.667 1.72 0.00 39.34 5.28
683 703 0.624795 AAAGGGCTAGGGGAGGAAGG 60.625 60.000 0.00 0.00 0.00 3.46
684 704 1.537478 AAGGGCTAGGGGAGGAAGGA 61.537 60.000 0.00 0.00 0.00 3.36
685 705 1.460497 GGGCTAGGGGAGGAAGGAG 60.460 68.421 0.00 0.00 0.00 3.69
686 706 1.627019 GGCTAGGGGAGGAAGGAGA 59.373 63.158 0.00 0.00 0.00 3.71
687 707 0.471022 GGCTAGGGGAGGAAGGAGAG 60.471 65.000 0.00 0.00 0.00 3.20
688 708 0.263468 GCTAGGGGAGGAAGGAGAGT 59.737 60.000 0.00 0.00 0.00 3.24
689 709 1.756333 GCTAGGGGAGGAAGGAGAGTC 60.756 61.905 0.00 0.00 0.00 3.36
690 710 0.551879 TAGGGGAGGAAGGAGAGTCG 59.448 60.000 0.00 0.00 0.00 4.18
691 711 1.215679 AGGGGAGGAAGGAGAGTCGA 61.216 60.000 0.00 0.00 0.00 4.20
692 712 0.753848 GGGGAGGAAGGAGAGTCGAG 60.754 65.000 0.00 0.00 0.00 4.04
693 713 0.256464 GGGAGGAAGGAGAGTCGAGA 59.744 60.000 0.00 0.00 0.00 4.04
694 714 1.675552 GGAGGAAGGAGAGTCGAGAG 58.324 60.000 0.00 0.00 0.00 3.20
695 715 1.675552 GAGGAAGGAGAGTCGAGAGG 58.324 60.000 0.00 0.00 0.00 3.69
696 716 0.996583 AGGAAGGAGAGTCGAGAGGT 59.003 55.000 0.00 0.00 0.00 3.85
697 717 1.356398 AGGAAGGAGAGTCGAGAGGTT 59.644 52.381 0.00 0.00 0.00 3.50
698 718 1.474879 GGAAGGAGAGTCGAGAGGTTG 59.525 57.143 0.00 0.00 0.00 3.77
699 719 2.438411 GAAGGAGAGTCGAGAGGTTGA 58.562 52.381 0.00 0.00 0.00 3.18
700 720 1.828979 AGGAGAGTCGAGAGGTTGAC 58.171 55.000 0.00 0.00 37.35 3.18
701 721 0.812549 GGAGAGTCGAGAGGTTGACC 59.187 60.000 0.00 0.00 37.78 4.02
702 722 1.535833 GAGAGTCGAGAGGTTGACCA 58.464 55.000 2.56 0.00 37.78 4.02
703 723 1.887198 GAGAGTCGAGAGGTTGACCAA 59.113 52.381 2.56 0.00 37.78 3.67
704 724 1.889829 AGAGTCGAGAGGTTGACCAAG 59.110 52.381 2.56 0.00 37.78 3.61
705 725 1.614413 GAGTCGAGAGGTTGACCAAGT 59.386 52.381 2.56 0.00 37.78 3.16
706 726 1.614413 AGTCGAGAGGTTGACCAAGTC 59.386 52.381 2.56 0.00 37.78 3.01
707 727 1.340248 GTCGAGAGGTTGACCAAGTCA 59.660 52.381 2.56 0.00 41.09 3.41
708 728 1.613925 TCGAGAGGTTGACCAAGTCAG 59.386 52.381 2.56 0.00 43.69 3.51
709 729 1.802069 GAGAGGTTGACCAAGTCAGC 58.198 55.000 2.56 3.28 43.69 4.26
710 730 1.070758 GAGAGGTTGACCAAGTCAGCA 59.929 52.381 12.63 0.00 43.74 4.41
711 731 1.490490 AGAGGTTGACCAAGTCAGCAA 59.510 47.619 12.63 0.00 43.74 3.91
712 732 2.092429 AGAGGTTGACCAAGTCAGCAAA 60.092 45.455 12.63 0.00 43.74 3.68
713 733 2.887152 GAGGTTGACCAAGTCAGCAAAT 59.113 45.455 12.63 0.00 43.74 2.32
714 734 4.072131 GAGGTTGACCAAGTCAGCAAATA 58.928 43.478 12.63 0.00 43.74 1.40
715 735 4.666512 AGGTTGACCAAGTCAGCAAATAT 58.333 39.130 12.63 0.00 43.74 1.28
716 736 5.079643 AGGTTGACCAAGTCAGCAAATATT 58.920 37.500 12.63 0.00 43.74 1.28
717 737 5.539955 AGGTTGACCAAGTCAGCAAATATTT 59.460 36.000 12.63 0.00 43.74 1.40
718 738 6.041979 AGGTTGACCAAGTCAGCAAATATTTT 59.958 34.615 12.63 0.00 43.74 1.82
719 739 6.705825 GGTTGACCAAGTCAGCAAATATTTTT 59.294 34.615 12.63 0.00 43.74 1.94
720 740 7.870445 GGTTGACCAAGTCAGCAAATATTTTTA 59.130 33.333 12.63 0.00 43.74 1.52
721 741 8.915654 GTTGACCAAGTCAGCAAATATTTTTAG 58.084 33.333 6.69 0.00 43.69 1.85
722 742 7.090173 TGACCAAGTCAGCAAATATTTTTAGC 58.910 34.615 0.00 0.00 37.67 3.09
723 743 6.991938 ACCAAGTCAGCAAATATTTTTAGCA 58.008 32.000 10.56 0.00 0.00 3.49
724 744 7.092716 ACCAAGTCAGCAAATATTTTTAGCAG 58.907 34.615 10.56 4.10 0.00 4.24
725 745 7.039784 ACCAAGTCAGCAAATATTTTTAGCAGA 60.040 33.333 10.56 6.05 0.00 4.26
726 746 7.814107 CCAAGTCAGCAAATATTTTTAGCAGAA 59.186 33.333 10.56 0.00 0.00 3.02
727 747 9.362539 CAAGTCAGCAAATATTTTTAGCAGAAT 57.637 29.630 10.56 5.50 0.00 2.40
728 748 9.933723 AAGTCAGCAAATATTTTTAGCAGAATT 57.066 25.926 10.56 10.07 0.00 2.17
741 761 8.948631 TTTTAGCAGAATTAGATCGATCTTGT 57.051 30.769 31.55 18.04 38.32 3.16
743 763 9.464714 TTTAGCAGAATTAGATCGATCTTGTAC 57.535 33.333 31.55 19.79 38.32 2.90
744 764 7.043961 AGCAGAATTAGATCGATCTTGTACA 57.956 36.000 31.55 11.90 38.32 2.90
745 765 7.665690 AGCAGAATTAGATCGATCTTGTACAT 58.334 34.615 31.55 13.85 38.32 2.29
746 766 8.147058 AGCAGAATTAGATCGATCTTGTACATT 58.853 33.333 31.55 20.10 38.32 2.71
747 767 8.219769 GCAGAATTAGATCGATCTTGTACATTG 58.780 37.037 31.55 20.35 38.32 2.82
748 768 8.706936 CAGAATTAGATCGATCTTGTACATTGG 58.293 37.037 31.55 10.78 38.32 3.16
749 769 8.642432 AGAATTAGATCGATCTTGTACATTGGA 58.358 33.333 31.55 8.12 38.32 3.53
750 770 8.594881 AATTAGATCGATCTTGTACATTGGAC 57.405 34.615 31.55 0.00 38.32 4.02
751 771 5.598416 AGATCGATCTTGTACATTGGACA 57.402 39.130 22.32 0.00 31.97 4.02
752 772 5.352284 AGATCGATCTTGTACATTGGACAC 58.648 41.667 22.32 0.00 31.97 3.67
753 773 3.507786 TCGATCTTGTACATTGGACACG 58.492 45.455 0.00 0.00 0.00 4.49
754 774 3.191791 TCGATCTTGTACATTGGACACGA 59.808 43.478 10.33 10.33 30.66 4.35
755 775 3.924073 CGATCTTGTACATTGGACACGAA 59.076 43.478 11.78 0.00 30.00 3.85
756 776 4.566759 CGATCTTGTACATTGGACACGAAT 59.433 41.667 11.78 1.64 30.00 3.34
757 777 5.500771 CGATCTTGTACATTGGACACGAATG 60.501 44.000 11.78 4.57 36.94 2.67
758 778 4.888917 TCTTGTACATTGGACACGAATGA 58.111 39.130 5.77 0.00 35.23 2.57
759 779 5.487433 TCTTGTACATTGGACACGAATGAT 58.513 37.500 5.77 2.00 35.23 2.45
785 805 8.255206 TCTCTGCGGAAATAATAAACTCAACTA 58.745 33.333 0.00 0.00 0.00 2.24
786 806 8.780846 TCTGCGGAAATAATAAACTCAACTAA 57.219 30.769 0.00 0.00 0.00 2.24
800 820 5.869579 ACTCAACTAATTCACACATGAGGT 58.130 37.500 0.00 0.00 37.67 3.85
808 828 6.713762 AATTCACACATGAGGTCTCAAAAA 57.286 33.333 0.00 0.00 43.58 1.94
809 829 5.756195 TTCACACATGAGGTCTCAAAAAG 57.244 39.130 0.00 0.00 43.58 2.27
810 830 4.780815 TCACACATGAGGTCTCAAAAAGT 58.219 39.130 0.00 0.00 43.58 2.66
827 854 8.950208 TCAAAAAGTACCACTTTAATTTTGGG 57.050 30.769 4.81 0.00 46.78 4.12
828 855 8.541234 TCAAAAAGTACCACTTTAATTTTGGGT 58.459 29.630 4.81 0.00 46.78 4.51
856 883 2.869354 CGTAGCCAACGTAGCTAGC 58.131 57.895 17.81 6.62 46.72 3.42
857 884 0.381089 CGTAGCCAACGTAGCTAGCT 59.619 55.000 23.12 23.12 46.72 3.32
858 885 1.600957 CGTAGCCAACGTAGCTAGCTA 59.399 52.381 20.67 20.67 46.72 3.32
859 886 2.349627 CGTAGCCAACGTAGCTAGCTAG 60.350 54.545 24.78 16.84 46.72 3.42
860 887 1.033574 AGCCAACGTAGCTAGCTAGG 58.966 55.000 32.60 32.60 39.29 3.02
863 890 1.536284 CCAACGTAGCTAGCTAGGCAC 60.536 57.143 33.62 21.07 37.78 5.01
864 891 0.745468 AACGTAGCTAGCTAGGCACC 59.255 55.000 33.62 18.42 37.78 5.01
865 892 0.395311 ACGTAGCTAGCTAGGCACCA 60.395 55.000 33.62 10.35 37.78 4.17
866 893 0.030908 CGTAGCTAGCTAGGCACCAC 59.969 60.000 26.49 14.89 0.00 4.16
867 894 1.404843 GTAGCTAGCTAGGCACCACT 58.595 55.000 24.78 11.52 0.00 4.00
868 895 1.067821 GTAGCTAGCTAGGCACCACTG 59.932 57.143 24.78 0.00 0.00 3.66
869 896 1.522580 GCTAGCTAGGCACCACTGC 60.523 63.158 22.10 1.41 43.41 4.40
870 897 1.900351 CTAGCTAGGCACCACTGCA 59.100 57.895 13.32 0.00 46.28 4.41
871 898 0.460987 CTAGCTAGGCACCACTGCAC 60.461 60.000 13.32 0.00 46.28 4.57
872 899 1.899437 TAGCTAGGCACCACTGCACC 61.899 60.000 0.00 0.00 46.28 5.01
873 900 2.749682 CTAGGCACCACTGCACCA 59.250 61.111 0.00 0.00 46.28 4.17
874 901 1.376424 CTAGGCACCACTGCACCAG 60.376 63.158 0.00 0.00 46.28 4.00
875 902 1.830587 CTAGGCACCACTGCACCAGA 61.831 60.000 0.00 0.00 46.28 3.86
876 903 2.111999 TAGGCACCACTGCACCAGAC 62.112 60.000 0.00 0.00 46.28 3.51
877 904 3.349006 GCACCACTGCACCAGACG 61.349 66.667 0.00 0.00 43.62 4.18
878 905 2.108976 CACCACTGCACCAGACGT 59.891 61.111 0.00 0.00 35.18 4.34
879 906 1.365999 CACCACTGCACCAGACGTA 59.634 57.895 0.00 0.00 35.18 3.57
952 979 1.433471 CCACGATCGAGCTGCAGTA 59.567 57.895 24.34 0.00 0.00 2.74
976 1003 7.388460 ACAGTACGACCCAGCTTATATATAC 57.612 40.000 0.00 0.00 0.00 1.47
977 1004 6.093219 ACAGTACGACCCAGCTTATATATACG 59.907 42.308 0.00 0.00 0.00 3.06
978 1005 4.978083 ACGACCCAGCTTATATATACGG 57.022 45.455 0.00 0.00 0.00 4.02
980 1007 3.129813 CGACCCAGCTTATATATACGGCA 59.870 47.826 15.15 0.00 0.00 5.69
981 1008 4.430908 GACCCAGCTTATATATACGGCAC 58.569 47.826 15.15 0.00 0.00 5.01
982 1009 4.094476 ACCCAGCTTATATATACGGCACT 58.906 43.478 15.15 0.00 0.00 4.40
983 1010 4.530946 ACCCAGCTTATATATACGGCACTT 59.469 41.667 15.15 0.00 0.00 3.16
984 1011 5.109903 CCCAGCTTATATATACGGCACTTC 58.890 45.833 15.15 0.00 0.00 3.01
985 1012 4.798907 CCAGCTTATATATACGGCACTTCG 59.201 45.833 15.15 0.00 0.00 3.79
991 1018 1.175654 TATACGGCACTTCGTCACCA 58.824 50.000 0.00 0.00 42.82 4.17
994 1021 1.594293 CGGCACTTCGTCACCAGTT 60.594 57.895 0.00 0.00 0.00 3.16
1015 1042 5.012561 AGTTAAGTCCAGAGCTCATCAAACT 59.987 40.000 17.77 12.19 0.00 2.66
1040 1067 0.321671 TTTTCCGGAGCTCCAGAGTG 59.678 55.000 31.67 15.11 35.14 3.51
1062 1089 2.104928 CATCAGCAGCTACGCCGA 59.895 61.111 0.00 0.00 0.00 5.54
1080 1107 1.320555 CGATCTTTCTTGGCACGTACG 59.679 52.381 15.01 15.01 0.00 3.67
1383 1416 3.062466 CGCTCGACCACCTCAGGA 61.062 66.667 0.00 0.00 0.00 3.86
2042 2106 0.957395 CAACGAGCTGCCACCTTGAT 60.957 55.000 0.00 0.00 0.00 2.57
2088 2152 2.944094 GCGTGGTGATTAAATCCAGGGT 60.944 50.000 14.05 0.00 37.52 4.34
2146 2210 3.014623 TCGTCTTGAGCCTTCGATCTAA 58.985 45.455 0.00 0.00 0.00 2.10
2162 2226 6.330278 TCGATCTAAAAGTATGGTGTGACTG 58.670 40.000 0.00 0.00 0.00 3.51
2183 2247 3.052414 TGGAAGTCAGCCTACACCCTATA 60.052 47.826 0.00 0.00 0.00 1.31
2184 2248 4.161102 GGAAGTCAGCCTACACCCTATAT 58.839 47.826 0.00 0.00 0.00 0.86
2185 2249 4.593634 GGAAGTCAGCCTACACCCTATATT 59.406 45.833 0.00 0.00 0.00 1.28
2186 2250 5.071923 GGAAGTCAGCCTACACCCTATATTT 59.928 44.000 0.00 0.00 0.00 1.40
2187 2251 6.409349 GGAAGTCAGCCTACACCCTATATTTT 60.409 42.308 0.00 0.00 0.00 1.82
2188 2252 6.576778 AGTCAGCCTACACCCTATATTTTT 57.423 37.500 0.00 0.00 0.00 1.94
2209 2273 3.667497 TGTGAGAATGAGACACCAGTC 57.333 47.619 0.00 0.00 45.31 3.51
2238 2302 1.605232 CGGTGGTGAGTACCCAAAAAC 59.395 52.381 0.00 0.00 46.96 2.43
2284 2348 6.911484 AAGCGTCGAAATAAAGTGAAAATG 57.089 33.333 0.00 0.00 0.00 2.32
2301 2365 1.925285 ATGCCGATTTGAGCCAGGGA 61.925 55.000 0.00 0.00 0.00 4.20
2305 2369 1.340017 CCGATTTGAGCCAGGGAAAGA 60.340 52.381 0.00 0.00 0.00 2.52
2306 2370 1.740025 CGATTTGAGCCAGGGAAAGAC 59.260 52.381 0.00 0.00 0.00 3.01
2307 2371 1.740025 GATTTGAGCCAGGGAAAGACG 59.260 52.381 0.00 0.00 0.00 4.18
2308 2372 0.889186 TTTGAGCCAGGGAAAGACGC 60.889 55.000 0.00 0.00 0.00 5.19
2310 2374 0.902984 TGAGCCAGGGAAAGACGCTA 60.903 55.000 0.00 0.00 39.79 4.26
2311 2375 0.466124 GAGCCAGGGAAAGACGCTAT 59.534 55.000 0.00 0.00 39.79 2.97
2312 2376 0.179000 AGCCAGGGAAAGACGCTATG 59.821 55.000 0.00 0.00 39.79 2.23
2324 2388 2.415843 GCTATGCGGACGCCACTA 59.584 61.111 14.61 2.80 41.09 2.74
2325 2389 1.661821 GCTATGCGGACGCCACTAG 60.662 63.158 14.61 12.59 41.09 2.57
2326 2390 1.007271 CTATGCGGACGCCACTAGG 60.007 63.158 14.61 0.00 41.09 3.02
2327 2391 1.735376 CTATGCGGACGCCACTAGGT 61.735 60.000 14.61 0.00 41.09 3.08
2359 2423 9.533253 TTTTTCTATTTCTCTTTTGCTTCCTTG 57.467 29.630 0.00 0.00 0.00 3.61
2360 2424 6.824305 TCTATTTCTCTTTTGCTTCCTTGG 57.176 37.500 0.00 0.00 0.00 3.61
2361 2425 3.733443 TTTCTCTTTTGCTTCCTTGGC 57.267 42.857 0.00 0.00 0.00 4.52
2362 2426 2.664402 TCTCTTTTGCTTCCTTGGCT 57.336 45.000 0.00 0.00 0.00 4.75
2363 2427 2.949447 TCTCTTTTGCTTCCTTGGCTT 58.051 42.857 0.00 0.00 0.00 4.35
2364 2428 2.624838 TCTCTTTTGCTTCCTTGGCTTG 59.375 45.455 0.00 0.00 0.00 4.01
2365 2429 2.624838 CTCTTTTGCTTCCTTGGCTTGA 59.375 45.455 0.00 0.00 0.00 3.02
2366 2430 3.233507 TCTTTTGCTTCCTTGGCTTGAT 58.766 40.909 0.00 0.00 0.00 2.57
2367 2431 3.642848 TCTTTTGCTTCCTTGGCTTGATT 59.357 39.130 0.00 0.00 0.00 2.57
2368 2432 3.389925 TTTGCTTCCTTGGCTTGATTG 57.610 42.857 0.00 0.00 0.00 2.67
2369 2433 1.999648 TGCTTCCTTGGCTTGATTGT 58.000 45.000 0.00 0.00 0.00 2.71
2370 2434 1.614903 TGCTTCCTTGGCTTGATTGTG 59.385 47.619 0.00 0.00 0.00 3.33
2371 2435 1.670967 GCTTCCTTGGCTTGATTGTGC 60.671 52.381 0.00 0.00 0.00 4.57
2372 2436 1.891150 CTTCCTTGGCTTGATTGTGCT 59.109 47.619 0.00 0.00 0.00 4.40
2373 2437 1.250328 TCCTTGGCTTGATTGTGCTG 58.750 50.000 0.00 0.00 0.00 4.41
2374 2438 0.963962 CCTTGGCTTGATTGTGCTGT 59.036 50.000 0.00 0.00 0.00 4.40
2375 2439 1.336517 CCTTGGCTTGATTGTGCTGTG 60.337 52.381 0.00 0.00 0.00 3.66
2376 2440 0.675083 TTGGCTTGATTGTGCTGTGG 59.325 50.000 0.00 0.00 0.00 4.17
2377 2441 1.080298 GGCTTGATTGTGCTGTGGC 60.080 57.895 0.00 0.00 39.26 5.01
2378 2442 1.080298 GCTTGATTGTGCTGTGGCC 60.080 57.895 0.00 0.00 37.74 5.36
2379 2443 1.588082 CTTGATTGTGCTGTGGCCC 59.412 57.895 0.00 0.00 37.74 5.80
2380 2444 1.880819 CTTGATTGTGCTGTGGCCCC 61.881 60.000 0.00 0.00 37.74 5.80
2381 2445 2.283101 GATTGTGCTGTGGCCCCA 60.283 61.111 0.00 0.00 37.74 4.96
2382 2446 2.283388 ATTGTGCTGTGGCCCCAG 60.283 61.111 11.40 11.40 37.74 4.45
2390 2454 3.646715 GTGGCCCCAGCAGTGGTA 61.647 66.667 0.00 0.00 43.23 3.25
2391 2455 2.613696 TGGCCCCAGCAGTGGTAT 60.614 61.111 0.00 0.00 43.23 2.73
2392 2456 2.124151 GGCCCCAGCAGTGGTATG 60.124 66.667 0.00 0.00 43.23 2.39
2393 2457 2.677228 GCCCCAGCAGTGGTATGT 59.323 61.111 0.00 0.00 43.23 2.29
2394 2458 1.452108 GCCCCAGCAGTGGTATGTC 60.452 63.158 0.00 0.00 43.23 3.06
2395 2459 1.153369 CCCCAGCAGTGGTATGTCG 60.153 63.158 0.00 0.00 43.23 4.35
2396 2460 1.613317 CCCCAGCAGTGGTATGTCGA 61.613 60.000 0.00 0.00 43.23 4.20
2397 2461 0.179100 CCCAGCAGTGGTATGTCGAG 60.179 60.000 0.00 0.00 43.23 4.04
2398 2462 0.532573 CCAGCAGTGGTATGTCGAGT 59.467 55.000 0.00 0.00 39.30 4.18
2399 2463 1.633561 CAGCAGTGGTATGTCGAGTG 58.366 55.000 0.00 0.00 0.00 3.51
2400 2464 1.067565 CAGCAGTGGTATGTCGAGTGT 60.068 52.381 0.00 0.00 0.00 3.55
2401 2465 1.618837 AGCAGTGGTATGTCGAGTGTT 59.381 47.619 0.00 0.00 0.00 3.32
2402 2466 1.726791 GCAGTGGTATGTCGAGTGTTG 59.273 52.381 0.00 0.00 0.00 3.33
2403 2467 2.866460 GCAGTGGTATGTCGAGTGTTGT 60.866 50.000 0.00 0.00 0.00 3.32
2404 2468 3.390135 CAGTGGTATGTCGAGTGTTGTT 58.610 45.455 0.00 0.00 0.00 2.83
2405 2469 3.184379 CAGTGGTATGTCGAGTGTTGTTG 59.816 47.826 0.00 0.00 0.00 3.33
2406 2470 3.069016 AGTGGTATGTCGAGTGTTGTTGA 59.931 43.478 0.00 0.00 0.00 3.18
2407 2471 3.805422 GTGGTATGTCGAGTGTTGTTGAA 59.195 43.478 0.00 0.00 0.00 2.69
2408 2472 3.805422 TGGTATGTCGAGTGTTGTTGAAC 59.195 43.478 0.00 0.00 0.00 3.18
2409 2473 3.185797 GGTATGTCGAGTGTTGTTGAACC 59.814 47.826 0.00 0.00 0.00 3.62
2410 2474 2.684001 TGTCGAGTGTTGTTGAACCT 57.316 45.000 0.00 0.00 0.00 3.50
2411 2475 2.276201 TGTCGAGTGTTGTTGAACCTG 58.724 47.619 0.00 0.00 0.00 4.00
2412 2476 1.597663 GTCGAGTGTTGTTGAACCTGG 59.402 52.381 0.00 0.00 0.00 4.45
2413 2477 1.483004 TCGAGTGTTGTTGAACCTGGA 59.517 47.619 0.00 0.00 0.00 3.86
2414 2478 2.104111 TCGAGTGTTGTTGAACCTGGAT 59.896 45.455 0.00 0.00 0.00 3.41
2415 2479 2.878406 CGAGTGTTGTTGAACCTGGATT 59.122 45.455 0.00 0.00 0.00 3.01
2416 2480 3.303990 CGAGTGTTGTTGAACCTGGATTG 60.304 47.826 0.00 0.00 0.00 2.67
2417 2481 3.631250 AGTGTTGTTGAACCTGGATTGT 58.369 40.909 0.00 0.00 0.00 2.71
2418 2482 4.787551 AGTGTTGTTGAACCTGGATTGTA 58.212 39.130 0.00 0.00 0.00 2.41
2419 2483 5.385198 AGTGTTGTTGAACCTGGATTGTAT 58.615 37.500 0.00 0.00 0.00 2.29
2420 2484 5.241506 AGTGTTGTTGAACCTGGATTGTATG 59.758 40.000 0.00 0.00 0.00 2.39
2421 2485 4.522405 TGTTGTTGAACCTGGATTGTATGG 59.478 41.667 0.00 0.00 0.00 2.74
2422 2486 4.649267 TGTTGAACCTGGATTGTATGGA 57.351 40.909 0.00 0.00 0.00 3.41
2423 2487 5.191727 TGTTGAACCTGGATTGTATGGAT 57.808 39.130 0.00 0.00 0.00 3.41
2424 2488 5.192927 TGTTGAACCTGGATTGTATGGATC 58.807 41.667 0.00 0.00 0.00 3.36
2425 2489 4.071961 TGAACCTGGATTGTATGGATCG 57.928 45.455 0.00 0.00 0.00 3.69
2426 2490 3.454447 TGAACCTGGATTGTATGGATCGT 59.546 43.478 0.00 0.00 0.00 3.73
2427 2491 4.080582 TGAACCTGGATTGTATGGATCGTT 60.081 41.667 0.00 0.00 0.00 3.85
2428 2492 3.808728 ACCTGGATTGTATGGATCGTTG 58.191 45.455 0.00 0.00 0.00 4.10
2429 2493 3.199946 ACCTGGATTGTATGGATCGTTGT 59.800 43.478 0.00 0.00 0.00 3.32
2430 2494 4.199310 CCTGGATTGTATGGATCGTTGTT 58.801 43.478 0.00 0.00 0.00 2.83
2431 2495 4.640201 CCTGGATTGTATGGATCGTTGTTT 59.360 41.667 0.00 0.00 0.00 2.83
2432 2496 5.125417 CCTGGATTGTATGGATCGTTGTTTT 59.875 40.000 0.00 0.00 0.00 2.43
2433 2497 6.317642 CCTGGATTGTATGGATCGTTGTTTTA 59.682 38.462 0.00 0.00 0.00 1.52
2434 2498 7.013274 CCTGGATTGTATGGATCGTTGTTTTAT 59.987 37.037 0.00 0.00 0.00 1.40
2435 2499 8.287439 TGGATTGTATGGATCGTTGTTTTATT 57.713 30.769 0.00 0.00 0.00 1.40
2436 2500 8.744652 TGGATTGTATGGATCGTTGTTTTATTT 58.255 29.630 0.00 0.00 0.00 1.40
2452 2516 7.809226 GTTTTATTTATAAAACGGGGCGAAA 57.191 32.000 17.49 0.00 46.69 3.46
2453 2517 7.887711 GTTTTATTTATAAAACGGGGCGAAAG 58.112 34.615 17.49 0.00 46.69 2.62
2454 2518 6.035217 TTTATTTATAAAACGGGGCGAAAGC 58.965 36.000 1.21 0.00 41.85 3.51
2469 2533 4.528531 CGAAAGCCTATTTCAAGAGAGC 57.471 45.455 1.73 0.00 0.00 4.09
2470 2534 3.311048 CGAAAGCCTATTTCAAGAGAGCC 59.689 47.826 1.73 0.00 0.00 4.70
2471 2535 4.265073 GAAAGCCTATTTCAAGAGAGCCA 58.735 43.478 0.00 0.00 0.00 4.75
2472 2536 3.557228 AGCCTATTTCAAGAGAGCCAG 57.443 47.619 0.00 0.00 0.00 4.85
2473 2537 2.172293 AGCCTATTTCAAGAGAGCCAGG 59.828 50.000 0.00 0.00 0.00 4.45
2474 2538 2.747799 GCCTATTTCAAGAGAGCCAGGG 60.748 54.545 0.00 0.00 0.00 4.45
2475 2539 2.570135 CTATTTCAAGAGAGCCAGGGC 58.430 52.381 0.97 0.97 42.33 5.19
2476 2540 0.700564 ATTTCAAGAGAGCCAGGGCA 59.299 50.000 13.63 0.00 44.88 5.36
2477 2541 0.478072 TTTCAAGAGAGCCAGGGCAA 59.522 50.000 13.63 0.00 44.88 4.52
2478 2542 0.037303 TTCAAGAGAGCCAGGGCAAG 59.963 55.000 13.63 0.00 44.88 4.01
2479 2543 0.837691 TCAAGAGAGCCAGGGCAAGA 60.838 55.000 13.63 0.00 44.88 3.02
2480 2544 0.392729 CAAGAGAGCCAGGGCAAGAG 60.393 60.000 13.63 0.00 44.88 2.85
2481 2545 0.839853 AAGAGAGCCAGGGCAAGAGT 60.840 55.000 13.63 0.00 44.88 3.24
2482 2546 1.078567 GAGAGCCAGGGCAAGAGTG 60.079 63.158 13.63 0.00 44.88 3.51
2483 2547 1.537397 AGAGCCAGGGCAAGAGTGA 60.537 57.895 13.63 0.00 44.88 3.41
2484 2548 1.078567 GAGCCAGGGCAAGAGTGAG 60.079 63.158 13.63 0.00 44.88 3.51
2485 2549 2.749441 GCCAGGGCAAGAGTGAGC 60.749 66.667 5.20 0.00 41.49 4.26
2490 2554 2.669569 GGCAAGAGTGAGCCGCAA 60.670 61.111 0.00 0.00 41.70 4.85
2491 2555 2.260869 GGCAAGAGTGAGCCGCAAA 61.261 57.895 0.00 0.00 41.70 3.68
2492 2556 1.081840 GCAAGAGTGAGCCGCAAAC 60.082 57.895 0.00 0.00 0.00 2.93
2493 2557 1.205064 CAAGAGTGAGCCGCAAACG 59.795 57.895 0.00 0.00 39.67 3.60
2494 2558 1.069090 AAGAGTGAGCCGCAAACGA 59.931 52.632 0.00 0.00 43.93 3.85
2495 2559 0.531974 AAGAGTGAGCCGCAAACGAA 60.532 50.000 0.00 0.00 43.93 3.85
2496 2560 0.320771 AGAGTGAGCCGCAAACGAAT 60.321 50.000 0.00 0.00 43.93 3.34
2497 2561 1.067142 AGAGTGAGCCGCAAACGAATA 60.067 47.619 0.00 0.00 43.93 1.75
2498 2562 1.730064 GAGTGAGCCGCAAACGAATAA 59.270 47.619 0.00 0.00 43.93 1.40
2499 2563 1.732259 AGTGAGCCGCAAACGAATAAG 59.268 47.619 0.00 0.00 43.93 1.73
2500 2564 1.463444 GTGAGCCGCAAACGAATAAGT 59.537 47.619 0.00 0.00 43.93 2.24
2501 2565 2.669434 GTGAGCCGCAAACGAATAAGTA 59.331 45.455 0.00 0.00 43.93 2.24
2502 2566 3.123959 GTGAGCCGCAAACGAATAAGTAA 59.876 43.478 0.00 0.00 43.93 2.24
2503 2567 3.747010 TGAGCCGCAAACGAATAAGTAAA 59.253 39.130 0.00 0.00 43.93 2.01
2504 2568 4.393680 TGAGCCGCAAACGAATAAGTAAAT 59.606 37.500 0.00 0.00 43.93 1.40
2505 2569 5.106475 TGAGCCGCAAACGAATAAGTAAATT 60.106 36.000 0.00 0.00 43.93 1.82
2506 2570 5.705902 AGCCGCAAACGAATAAGTAAATTT 58.294 33.333 0.00 0.00 43.93 1.82
2507 2571 6.844254 AGCCGCAAACGAATAAGTAAATTTA 58.156 32.000 0.00 0.00 43.93 1.40
2508 2572 6.744082 AGCCGCAAACGAATAAGTAAATTTAC 59.256 34.615 18.77 18.77 43.93 2.01
2509 2573 6.021232 GCCGCAAACGAATAAGTAAATTTACC 60.021 38.462 21.92 7.84 43.93 2.85
2510 2574 6.193228 CCGCAAACGAATAAGTAAATTTACCG 59.807 38.462 21.92 19.19 43.93 4.02
2511 2575 6.193228 CGCAAACGAATAAGTAAATTTACCGG 59.807 38.462 21.92 0.00 43.93 5.28
2512 2576 7.242783 GCAAACGAATAAGTAAATTTACCGGA 58.757 34.615 21.92 10.06 34.19 5.14
2526 2590 3.203442 CGGAACCGGTAGCTAGCA 58.797 61.111 21.99 0.00 35.56 3.49
2574 2638 4.804139 TCTCTGAGTTCGTGACAACTTTTC 59.196 41.667 4.32 0.00 36.71 2.29
2616 2912 2.479566 TTGCTCATCAGACAAGACCC 57.520 50.000 0.00 0.00 0.00 4.46
2652 2948 9.606631 ACATTTTGGCTAATTTCAAGTTTACAA 57.393 25.926 0.00 0.00 0.00 2.41
2664 2960 8.909708 TTTCAAGTTTACAATTTCAGTCAGTG 57.090 30.769 0.00 0.00 0.00 3.66
2667 2963 8.519526 TCAAGTTTACAATTTCAGTCAGTGTTT 58.480 29.630 0.00 0.00 0.00 2.83
2668 2964 8.798153 CAAGTTTACAATTTCAGTCAGTGTTTC 58.202 33.333 0.00 0.00 0.00 2.78
2671 2967 4.908736 ACAATTTCAGTCAGTGTTTCACG 58.091 39.130 0.00 0.00 39.64 4.35
2739 3036 7.748847 ACTTGTAAAATACCTATTTCGCACAG 58.251 34.615 0.00 0.00 35.00 3.66
2749 3046 5.938125 ACCTATTTCGCACAGTAGAAAACAT 59.062 36.000 7.27 0.00 39.42 2.71
2750 3047 6.128282 ACCTATTTCGCACAGTAGAAAACATG 60.128 38.462 7.27 0.00 39.42 3.21
2760 3057 8.082242 GCACAGTAGAAAACATGGATTTTAGTT 58.918 33.333 0.00 0.00 31.90 2.24
2852 3150 5.968254 TGTTTAAAAACCCAGTTTCACTCC 58.032 37.500 3.27 0.00 38.11 3.85
3015 3348 8.816640 AAACAATTTCACTCGCTTCATAAAAT 57.183 26.923 0.00 0.00 0.00 1.82
3115 3466 7.250445 TCAAATCTCCGAAATATGTGTCATG 57.750 36.000 0.00 0.00 0.00 3.07
3116 3467 6.823182 TCAAATCTCCGAAATATGTGTCATGT 59.177 34.615 0.00 0.00 0.00 3.21
3160 3514 9.833894 CACTCATTTCAAAAATTAGTTTCGTTG 57.166 29.630 0.00 0.00 0.00 4.10
3219 3573 9.179909 ACCCATTTCACATATTTTAATACACGA 57.820 29.630 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.222145 ACGTGAGTTGACCCAAGTACATAT 59.778 41.667 0.00 0.00 46.40 1.78
6 7 2.521105 ACGTGAGTTGACCCAAGTAC 57.479 50.000 0.00 0.00 46.40 2.73
19 20 2.096565 CAGTCTTCACATGCAACGTGAG 60.097 50.000 18.39 13.89 43.85 3.51
20 21 1.866601 CAGTCTTCACATGCAACGTGA 59.133 47.619 16.08 16.08 41.53 4.35
21 22 1.866601 TCAGTCTTCACATGCAACGTG 59.133 47.619 12.25 12.25 35.63 4.49
22 23 2.238942 TCAGTCTTCACATGCAACGT 57.761 45.000 0.00 0.00 0.00 3.99
23 24 3.002656 ACTTTCAGTCTTCACATGCAACG 59.997 43.478 0.00 0.00 0.00 4.10
24 25 4.558538 ACTTTCAGTCTTCACATGCAAC 57.441 40.909 0.00 0.00 0.00 4.17
25 26 6.712095 AGAATACTTTCAGTCTTCACATGCAA 59.288 34.615 0.00 0.00 34.79 4.08
26 27 6.233434 AGAATACTTTCAGTCTTCACATGCA 58.767 36.000 0.00 0.00 34.79 3.96
27 28 6.734104 AGAATACTTTCAGTCTTCACATGC 57.266 37.500 0.00 0.00 34.79 4.06
28 29 8.092521 ACAAGAATACTTTCAGTCTTCACATG 57.907 34.615 0.00 0.00 34.79 3.21
29 30 9.209175 GTACAAGAATACTTTCAGTCTTCACAT 57.791 33.333 5.21 0.00 34.79 3.21
30 31 8.201464 TGTACAAGAATACTTTCAGTCTTCACA 58.799 33.333 0.00 0.00 34.79 3.58
31 32 8.589335 TGTACAAGAATACTTTCAGTCTTCAC 57.411 34.615 0.00 0.00 34.79 3.18
32 33 9.778741 AATGTACAAGAATACTTTCAGTCTTCA 57.221 29.630 0.00 0.00 34.79 3.02
34 35 8.507249 GCAATGTACAAGAATACTTTCAGTCTT 58.493 33.333 0.00 0.00 33.35 3.01
35 36 7.880195 AGCAATGTACAAGAATACTTTCAGTCT 59.120 33.333 0.00 0.00 33.70 3.24
36 37 8.034058 AGCAATGTACAAGAATACTTTCAGTC 57.966 34.615 0.00 0.00 33.70 3.51
37 38 7.986085 AGCAATGTACAAGAATACTTTCAGT 57.014 32.000 0.00 0.00 33.70 3.41
38 39 8.725148 AGAAGCAATGTACAAGAATACTTTCAG 58.275 33.333 0.00 0.00 33.70 3.02
39 40 8.621532 AGAAGCAATGTACAAGAATACTTTCA 57.378 30.769 0.00 0.00 33.70 2.69
40 41 9.899226 AAAGAAGCAATGTACAAGAATACTTTC 57.101 29.630 0.00 0.00 33.70 2.62
140 145 1.766496 TCCGGTGGTATTGGAATCTCC 59.234 52.381 0.00 0.00 36.96 3.71
149 154 0.906775 AATGGTCGTCCGGTGGTATT 59.093 50.000 0.00 0.00 36.30 1.89
151 156 0.817013 GTAATGGTCGTCCGGTGGTA 59.183 55.000 0.00 0.00 36.30 3.25
159 164 3.259751 GCGGCGGTAATGGTCGTC 61.260 66.667 9.78 0.00 34.45 4.20
232 237 2.456119 CCGGCTGTCATCGACAAGC 61.456 63.158 0.00 4.57 42.26 4.01
279 284 1.548719 ACTACACTTACATGGCGCTGA 59.451 47.619 7.64 0.00 0.00 4.26
287 292 4.959596 ACGACGATGACTACACTTACAT 57.040 40.909 0.00 0.00 0.00 2.29
290 295 5.149273 GTTCAACGACGATGACTACACTTA 58.851 41.667 7.37 0.00 0.00 2.24
293 298 2.660236 GGTTCAACGACGATGACTACAC 59.340 50.000 7.37 3.45 0.00 2.90
294 305 2.352030 GGGTTCAACGACGATGACTACA 60.352 50.000 7.37 0.00 0.00 2.74
296 307 2.165167 AGGGTTCAACGACGATGACTA 58.835 47.619 7.37 0.00 0.00 2.59
347 359 2.610232 GGCTTTCAAATCGTGTGGCAAT 60.610 45.455 0.00 0.00 0.00 3.56
359 371 2.884639 GCAGTCTGGTTAGGCTTTCAAA 59.115 45.455 1.14 0.00 36.54 2.69
360 372 2.504367 GCAGTCTGGTTAGGCTTTCAA 58.496 47.619 1.14 0.00 36.54 2.69
361 373 1.271379 GGCAGTCTGGTTAGGCTTTCA 60.271 52.381 1.14 0.00 36.54 2.69
366 378 2.137177 TTGGGGCAGTCTGGTTAGGC 62.137 60.000 1.14 0.00 0.00 3.93
374 386 0.832135 TCGTCTTCTTGGGGCAGTCT 60.832 55.000 0.00 0.00 0.00 3.24
375 387 0.250513 ATCGTCTTCTTGGGGCAGTC 59.749 55.000 0.00 0.00 0.00 3.51
394 406 2.171840 GAGCTCCGGCATAGATTCCTA 58.828 52.381 0.87 0.00 41.70 2.94
446 458 4.794278 TGTCTTACAGGCTTCAATCGTA 57.206 40.909 0.00 0.00 0.00 3.43
461 473 5.277345 GCACTTTTTCTTCGAGCTTGTCTTA 60.277 40.000 0.00 0.00 0.00 2.10
469 481 1.335051 GGTGGCACTTTTTCTTCGAGC 60.335 52.381 18.45 0.00 0.00 5.03
479 491 1.671054 CGACGGATGGTGGCACTTT 60.671 57.895 18.45 5.00 0.00 2.66
510 522 4.263374 GGTTAGGGTTTTCTAGTCCTTGCT 60.263 45.833 0.00 0.00 0.00 3.91
543 559 2.290122 CTGGTGCCTCCGCTCTAGTG 62.290 65.000 0.00 0.00 39.52 2.74
577 597 3.680786 CACTCAGACGGCGGGTGA 61.681 66.667 13.24 12.56 0.00 4.02
587 607 1.228988 TCTCTGCCTGCCACTCAGA 60.229 57.895 0.00 0.00 45.72 3.27
589 609 2.288778 CCTCTCTGCCTGCCACTCA 61.289 63.158 0.00 0.00 0.00 3.41
593 613 2.686470 CCTCCTCTCTGCCTGCCA 60.686 66.667 0.00 0.00 0.00 4.92
605 625 3.470888 CCCGTGGATTCGCCTCCT 61.471 66.667 4.95 0.00 36.20 3.69
623 643 2.428171 CCCTCCATACTTAACCGACGAA 59.572 50.000 0.00 0.00 0.00 3.85
627 647 2.245546 TCTCCCCTCCATACTTAACCGA 59.754 50.000 0.00 0.00 0.00 4.69
632 652 5.214293 GGTAAACTCTCCCCTCCATACTTA 58.786 45.833 0.00 0.00 0.00 2.24
660 680 0.690077 CCTCCCCTAGCCCTTTACGT 60.690 60.000 0.00 0.00 0.00 3.57
670 690 1.477923 CGACTCTCCTTCCTCCCCTAG 60.478 61.905 0.00 0.00 0.00 3.02
683 703 1.535833 TGGTCAACCTCTCGACTCTC 58.464 55.000 0.10 0.00 36.82 3.20
684 704 1.889829 CTTGGTCAACCTCTCGACTCT 59.110 52.381 0.10 0.00 36.82 3.24
685 705 1.614413 ACTTGGTCAACCTCTCGACTC 59.386 52.381 0.10 0.00 36.82 3.36
686 706 1.614413 GACTTGGTCAACCTCTCGACT 59.386 52.381 0.10 0.00 36.82 4.18
687 707 1.340248 TGACTTGGTCAACCTCTCGAC 59.660 52.381 0.10 0.00 39.78 4.20
688 708 1.613925 CTGACTTGGTCAACCTCTCGA 59.386 52.381 0.10 0.00 42.26 4.04
689 709 1.937108 GCTGACTTGGTCAACCTCTCG 60.937 57.143 0.10 0.00 42.26 4.04
690 710 1.070758 TGCTGACTTGGTCAACCTCTC 59.929 52.381 0.10 0.00 42.26 3.20
691 711 1.131638 TGCTGACTTGGTCAACCTCT 58.868 50.000 0.10 0.00 42.26 3.69
692 712 1.967319 TTGCTGACTTGGTCAACCTC 58.033 50.000 0.10 0.00 42.26 3.85
693 713 2.435372 TTTGCTGACTTGGTCAACCT 57.565 45.000 0.10 0.00 42.26 3.50
694 714 5.391312 AATATTTGCTGACTTGGTCAACC 57.609 39.130 2.04 0.00 42.26 3.77
695 715 7.713764 AAAAATATTTGCTGACTTGGTCAAC 57.286 32.000 0.39 0.00 42.26 3.18
696 716 7.598493 GCTAAAAATATTTGCTGACTTGGTCAA 59.402 33.333 0.39 0.00 42.26 3.18
697 717 7.090173 GCTAAAAATATTTGCTGACTTGGTCA 58.910 34.615 0.39 0.43 40.50 4.02
698 718 7.090173 TGCTAAAAATATTTGCTGACTTGGTC 58.910 34.615 0.39 0.00 0.00 4.02
699 719 6.991938 TGCTAAAAATATTTGCTGACTTGGT 58.008 32.000 0.39 0.00 0.00 3.67
700 720 7.315142 TCTGCTAAAAATATTTGCTGACTTGG 58.685 34.615 0.39 0.00 31.96 3.61
701 721 8.746922 TTCTGCTAAAAATATTTGCTGACTTG 57.253 30.769 14.23 0.00 34.12 3.16
702 722 9.933723 AATTCTGCTAAAAATATTTGCTGACTT 57.066 25.926 14.23 12.93 34.12 3.01
715 735 9.383519 ACAAGATCGATCTAATTCTGCTAAAAA 57.616 29.630 27.52 0.00 35.76 1.94
716 736 8.948631 ACAAGATCGATCTAATTCTGCTAAAA 57.051 30.769 27.52 0.00 35.76 1.52
717 737 9.464714 GTACAAGATCGATCTAATTCTGCTAAA 57.535 33.333 27.52 6.62 35.76 1.85
718 738 8.630037 TGTACAAGATCGATCTAATTCTGCTAA 58.370 33.333 27.52 8.81 35.76 3.09
719 739 8.166422 TGTACAAGATCGATCTAATTCTGCTA 57.834 34.615 27.52 13.06 35.76 3.49
720 740 7.043961 TGTACAAGATCGATCTAATTCTGCT 57.956 36.000 27.52 13.89 35.76 4.24
721 741 7.881643 ATGTACAAGATCGATCTAATTCTGC 57.118 36.000 27.52 14.19 35.76 4.26
722 742 8.706936 CCAATGTACAAGATCGATCTAATTCTG 58.293 37.037 27.52 22.25 35.76 3.02
723 743 8.642432 TCCAATGTACAAGATCGATCTAATTCT 58.358 33.333 27.52 9.54 35.76 2.40
724 744 8.704234 GTCCAATGTACAAGATCGATCTAATTC 58.296 37.037 27.52 17.80 35.76 2.17
725 745 8.204160 TGTCCAATGTACAAGATCGATCTAATT 58.796 33.333 27.52 17.71 35.76 1.40
726 746 7.653713 GTGTCCAATGTACAAGATCGATCTAAT 59.346 37.037 27.52 19.90 35.76 1.73
727 747 6.978659 GTGTCCAATGTACAAGATCGATCTAA 59.021 38.462 27.52 13.74 35.76 2.10
728 748 6.504398 GTGTCCAATGTACAAGATCGATCTA 58.496 40.000 27.52 12.61 35.76 1.98
729 749 5.352284 GTGTCCAATGTACAAGATCGATCT 58.648 41.667 22.32 22.32 39.22 2.75
730 750 4.207224 CGTGTCCAATGTACAAGATCGATC 59.793 45.833 17.91 17.91 0.00 3.69
731 751 4.112634 CGTGTCCAATGTACAAGATCGAT 58.887 43.478 0.00 0.00 0.00 3.59
732 752 3.191791 TCGTGTCCAATGTACAAGATCGA 59.808 43.478 0.00 9.20 31.72 3.59
733 753 3.507786 TCGTGTCCAATGTACAAGATCG 58.492 45.455 0.00 7.24 31.72 3.69
734 754 5.580691 TCATTCGTGTCCAATGTACAAGATC 59.419 40.000 0.00 0.00 35.71 2.75
735 755 5.487433 TCATTCGTGTCCAATGTACAAGAT 58.513 37.500 0.00 0.00 35.71 2.40
736 756 4.888917 TCATTCGTGTCCAATGTACAAGA 58.111 39.130 0.00 0.00 34.27 3.02
737 757 5.582269 AGATCATTCGTGTCCAATGTACAAG 59.418 40.000 0.00 0.00 33.61 3.16
738 758 5.487433 AGATCATTCGTGTCCAATGTACAA 58.513 37.500 0.00 0.00 33.61 2.41
739 759 5.084818 AGATCATTCGTGTCCAATGTACA 57.915 39.130 0.00 0.00 33.61 2.90
740 760 5.233050 CAGAGATCATTCGTGTCCAATGTAC 59.767 44.000 0.00 0.00 33.61 2.90
741 761 5.351458 CAGAGATCATTCGTGTCCAATGTA 58.649 41.667 0.00 0.00 33.61 2.29
742 762 4.186926 CAGAGATCATTCGTGTCCAATGT 58.813 43.478 0.00 0.00 33.61 2.71
743 763 3.002042 GCAGAGATCATTCGTGTCCAATG 59.998 47.826 0.00 0.00 33.22 2.82
744 764 3.201290 GCAGAGATCATTCGTGTCCAAT 58.799 45.455 0.00 0.00 0.00 3.16
745 765 2.621338 GCAGAGATCATTCGTGTCCAA 58.379 47.619 0.00 0.00 0.00 3.53
746 766 1.469767 CGCAGAGATCATTCGTGTCCA 60.470 52.381 0.00 0.00 0.00 4.02
747 767 1.203928 CGCAGAGATCATTCGTGTCC 58.796 55.000 0.00 0.00 0.00 4.02
748 768 1.202302 TCCGCAGAGATCATTCGTGTC 60.202 52.381 0.00 0.00 0.00 3.67
749 769 0.817654 TCCGCAGAGATCATTCGTGT 59.182 50.000 0.00 0.00 0.00 4.49
750 770 1.926561 TTCCGCAGAGATCATTCGTG 58.073 50.000 0.00 0.00 0.00 4.35
751 771 2.672961 TTTCCGCAGAGATCATTCGT 57.327 45.000 0.00 0.00 0.00 3.85
752 772 5.852738 ATTATTTCCGCAGAGATCATTCG 57.147 39.130 0.00 0.00 0.00 3.34
753 773 8.778358 AGTTTATTATTTCCGCAGAGATCATTC 58.222 33.333 0.00 0.00 0.00 2.67
754 774 8.682936 AGTTTATTATTTCCGCAGAGATCATT 57.317 30.769 0.00 0.00 0.00 2.57
755 775 7.933577 TGAGTTTATTATTTCCGCAGAGATCAT 59.066 33.333 0.00 0.00 0.00 2.45
756 776 7.272244 TGAGTTTATTATTTCCGCAGAGATCA 58.728 34.615 0.00 0.00 0.00 2.92
757 777 7.715265 TGAGTTTATTATTTCCGCAGAGATC 57.285 36.000 0.00 0.00 0.00 2.75
758 778 7.770897 AGTTGAGTTTATTATTTCCGCAGAGAT 59.229 33.333 0.00 0.00 0.00 2.75
759 779 7.103641 AGTTGAGTTTATTATTTCCGCAGAGA 58.896 34.615 0.00 0.00 0.00 3.10
785 805 6.322201 ACTTTTTGAGACCTCATGTGTGAATT 59.678 34.615 0.01 0.00 39.64 2.17
786 806 5.829924 ACTTTTTGAGACCTCATGTGTGAAT 59.170 36.000 0.01 0.00 39.64 2.57
800 820 9.810545 CCAAAATTAAAGTGGTACTTTTTGAGA 57.189 29.630 11.66 0.00 45.38 3.27
808 828 7.849322 ATCAACCCAAAATTAAAGTGGTACT 57.151 32.000 0.00 0.00 0.00 2.73
809 829 7.751793 CGTATCAACCCAAAATTAAAGTGGTAC 59.248 37.037 2.76 0.00 0.00 3.34
810 830 7.447853 ACGTATCAACCCAAAATTAAAGTGGTA 59.552 33.333 0.00 0.00 0.00 3.25
827 854 2.527487 CGTTGGCTACGTACGTATCAAC 59.473 50.000 34.81 34.81 45.14 3.18
828 855 2.784505 CGTTGGCTACGTACGTATCAA 58.215 47.619 26.98 26.58 45.14 2.57
863 890 1.282248 CGTTACGTCTGGTGCAGTGG 61.282 60.000 0.00 0.00 32.61 4.00
864 891 0.596600 ACGTTACGTCTGGTGCAGTG 60.597 55.000 3.95 0.00 33.69 3.66
865 892 0.953727 TACGTTACGTCTGGTGCAGT 59.046 50.000 15.39 0.00 41.54 4.40
866 893 1.717645 GTTACGTTACGTCTGGTGCAG 59.282 52.381 15.39 0.00 41.54 4.41
867 894 1.066757 TGTTACGTTACGTCTGGTGCA 59.933 47.619 15.39 3.00 41.54 4.57
868 895 1.453148 GTGTTACGTTACGTCTGGTGC 59.547 52.381 15.39 0.32 41.54 5.01
869 896 2.722629 CTGTGTTACGTTACGTCTGGTG 59.277 50.000 15.39 0.00 41.54 4.17
870 897 2.287788 CCTGTGTTACGTTACGTCTGGT 60.288 50.000 15.39 0.00 41.54 4.00
871 898 2.322161 CCTGTGTTACGTTACGTCTGG 58.678 52.381 15.39 9.60 41.54 3.86
872 899 1.717645 GCCTGTGTTACGTTACGTCTG 59.282 52.381 15.39 4.00 41.54 3.51
873 900 1.337703 TGCCTGTGTTACGTTACGTCT 59.662 47.619 15.39 0.00 41.54 4.18
874 901 1.769733 TGCCTGTGTTACGTTACGTC 58.230 50.000 15.39 1.01 41.54 4.34
875 902 2.063266 CATGCCTGTGTTACGTTACGT 58.937 47.619 16.31 16.31 44.35 3.57
876 903 1.201877 GCATGCCTGTGTTACGTTACG 60.202 52.381 6.36 2.19 0.00 3.18
877 904 1.801771 TGCATGCCTGTGTTACGTTAC 59.198 47.619 16.68 0.00 0.00 2.50
878 905 2.171341 TGCATGCCTGTGTTACGTTA 57.829 45.000 16.68 0.00 0.00 3.18
879 906 1.199789 CATGCATGCCTGTGTTACGTT 59.800 47.619 14.93 0.00 0.00 3.99
952 979 6.093219 CGTATATATAAGCTGGGTCGTACTGT 59.907 42.308 0.00 0.00 0.00 3.55
957 984 3.129988 GCCGTATATATAAGCTGGGTCGT 59.870 47.826 8.21 0.00 0.00 4.34
981 1008 3.005472 TCTGGACTTAACTGGTGACGAAG 59.995 47.826 0.00 0.00 0.00 3.79
982 1009 2.960384 TCTGGACTTAACTGGTGACGAA 59.040 45.455 0.00 0.00 0.00 3.85
983 1010 2.557056 CTCTGGACTTAACTGGTGACGA 59.443 50.000 0.00 0.00 0.00 4.20
984 1011 2.927014 GCTCTGGACTTAACTGGTGACG 60.927 54.545 0.00 0.00 0.00 4.35
985 1012 2.300437 AGCTCTGGACTTAACTGGTGAC 59.700 50.000 0.00 0.00 0.00 3.67
991 1018 5.012561 AGTTTGATGAGCTCTGGACTTAACT 59.987 40.000 16.19 11.62 0.00 2.24
994 1021 4.380973 CGAGTTTGATGAGCTCTGGACTTA 60.381 45.833 16.19 0.00 33.80 2.24
1015 1042 1.449601 GAGCTCCGGAAAATGGCGA 60.450 57.895 5.23 0.00 0.00 5.54
1040 1067 2.295692 CGTAGCTGCTGATGTCTGC 58.704 57.895 13.43 5.09 40.61 4.26
1062 1089 2.334838 GTCGTACGTGCCAAGAAAGAT 58.665 47.619 16.05 0.00 0.00 2.40
1080 1107 2.663188 GCCGCCCATCTGATCGTC 60.663 66.667 0.00 0.00 0.00 4.20
1113 1140 1.556911 GATCTTCTTCACCAGGGCAGA 59.443 52.381 0.00 0.00 0.00 4.26
1383 1416 1.553704 GTTGTCGTGGTAGGGGAAGAT 59.446 52.381 0.00 0.00 0.00 2.40
2088 2152 4.440826 TTGAACTAACAAAGCCTACCCA 57.559 40.909 0.00 0.00 0.00 4.51
2146 2210 4.642429 GACTTCCAGTCACACCATACTTT 58.358 43.478 0.00 0.00 44.45 2.66
2162 2226 1.861982 TAGGGTGTAGGCTGACTTCC 58.138 55.000 0.00 0.00 0.00 3.46
2185 2249 5.192927 ACTGGTGTCTCATTCTCACAAAAA 58.807 37.500 0.00 0.00 34.27 1.94
2186 2250 4.780815 ACTGGTGTCTCATTCTCACAAAA 58.219 39.130 0.00 0.00 34.27 2.44
2187 2251 4.380531 GACTGGTGTCTCATTCTCACAAA 58.619 43.478 0.00 0.00 39.94 2.83
2188 2252 3.552890 CGACTGGTGTCTCATTCTCACAA 60.553 47.826 0.00 0.00 40.86 3.33
2189 2253 2.029918 CGACTGGTGTCTCATTCTCACA 60.030 50.000 0.00 0.00 40.86 3.58
2190 2254 2.029828 ACGACTGGTGTCTCATTCTCAC 60.030 50.000 0.00 0.00 40.86 3.51
2191 2255 2.229062 GACGACTGGTGTCTCATTCTCA 59.771 50.000 0.00 0.00 40.86 3.27
2209 2273 5.742791 GGTACTCACCACCGTTACAGACG 62.743 56.522 0.00 0.00 46.79 4.18
2212 2276 2.358939 GGTACTCACCACCGTTACAG 57.641 55.000 0.00 0.00 45.04 2.74
2225 2289 3.697542 ACAACTGGTGTTTTTGGGTACTC 59.302 43.478 0.00 0.00 37.01 2.59
2238 2302 7.540745 GCTTATTACCATTACAAACAACTGGTG 59.459 37.037 2.88 0.00 40.34 4.17
2254 2318 6.812656 TCACTTTATTTCGACGCTTATTACCA 59.187 34.615 0.00 0.00 0.00 3.25
2284 2348 0.965363 TTTCCCTGGCTCAAATCGGC 60.965 55.000 0.00 0.00 0.00 5.54
2307 2371 1.661821 CTAGTGGCGTCCGCATAGC 60.662 63.158 14.19 0.46 44.11 2.97
2308 2372 1.007271 CCTAGTGGCGTCCGCATAG 60.007 63.158 14.19 11.36 44.11 2.23
2310 2374 3.075005 ACCTAGTGGCGTCCGCAT 61.075 61.111 14.19 1.47 44.11 4.73
2311 2375 4.063967 CACCTAGTGGCGTCCGCA 62.064 66.667 14.19 0.00 44.11 5.69
2333 2397 9.533253 CAAGGAAGCAAAAGAGAAATAGAAAAA 57.467 29.630 0.00 0.00 0.00 1.94
2334 2398 8.143835 CCAAGGAAGCAAAAGAGAAATAGAAAA 58.856 33.333 0.00 0.00 0.00 2.29
2335 2399 7.661040 CCAAGGAAGCAAAAGAGAAATAGAAA 58.339 34.615 0.00 0.00 0.00 2.52
2336 2400 6.294731 GCCAAGGAAGCAAAAGAGAAATAGAA 60.295 38.462 0.00 0.00 0.00 2.10
2337 2401 5.183904 GCCAAGGAAGCAAAAGAGAAATAGA 59.816 40.000 0.00 0.00 0.00 1.98
2338 2402 5.184671 AGCCAAGGAAGCAAAAGAGAAATAG 59.815 40.000 0.00 0.00 0.00 1.73
2339 2403 5.079643 AGCCAAGGAAGCAAAAGAGAAATA 58.920 37.500 0.00 0.00 0.00 1.40
2340 2404 3.899980 AGCCAAGGAAGCAAAAGAGAAAT 59.100 39.130 0.00 0.00 0.00 2.17
2341 2405 3.299503 AGCCAAGGAAGCAAAAGAGAAA 58.700 40.909 0.00 0.00 0.00 2.52
2342 2406 2.949447 AGCCAAGGAAGCAAAAGAGAA 58.051 42.857 0.00 0.00 0.00 2.87
2343 2407 2.624838 CAAGCCAAGGAAGCAAAAGAGA 59.375 45.455 0.00 0.00 0.00 3.10
2344 2408 2.624838 TCAAGCCAAGGAAGCAAAAGAG 59.375 45.455 0.00 0.00 0.00 2.85
2345 2409 2.665165 TCAAGCCAAGGAAGCAAAAGA 58.335 42.857 0.00 0.00 0.00 2.52
2346 2410 3.672767 ATCAAGCCAAGGAAGCAAAAG 57.327 42.857 0.00 0.00 0.00 2.27
2347 2411 3.134442 ACAATCAAGCCAAGGAAGCAAAA 59.866 39.130 0.00 0.00 0.00 2.44
2348 2412 2.699846 ACAATCAAGCCAAGGAAGCAAA 59.300 40.909 0.00 0.00 0.00 3.68
2349 2413 2.036217 CACAATCAAGCCAAGGAAGCAA 59.964 45.455 0.00 0.00 0.00 3.91
2350 2414 1.614903 CACAATCAAGCCAAGGAAGCA 59.385 47.619 0.00 0.00 0.00 3.91
2351 2415 1.670967 GCACAATCAAGCCAAGGAAGC 60.671 52.381 0.00 0.00 0.00 3.86
2352 2416 1.891150 AGCACAATCAAGCCAAGGAAG 59.109 47.619 0.00 0.00 0.00 3.46
2353 2417 1.614903 CAGCACAATCAAGCCAAGGAA 59.385 47.619 0.00 0.00 0.00 3.36
2354 2418 1.250328 CAGCACAATCAAGCCAAGGA 58.750 50.000 0.00 0.00 0.00 3.36
2355 2419 0.963962 ACAGCACAATCAAGCCAAGG 59.036 50.000 0.00 0.00 0.00 3.61
2356 2420 1.336517 CCACAGCACAATCAAGCCAAG 60.337 52.381 0.00 0.00 0.00 3.61
2357 2421 0.675083 CCACAGCACAATCAAGCCAA 59.325 50.000 0.00 0.00 0.00 4.52
2358 2422 1.808531 GCCACAGCACAATCAAGCCA 61.809 55.000 0.00 0.00 39.53 4.75
2359 2423 1.080298 GCCACAGCACAATCAAGCC 60.080 57.895 0.00 0.00 39.53 4.35
2360 2424 1.080298 GGCCACAGCACAATCAAGC 60.080 57.895 0.00 0.00 42.56 4.01
2361 2425 1.588082 GGGCCACAGCACAATCAAG 59.412 57.895 4.39 0.00 44.19 3.02
2362 2426 3.776158 GGGCCACAGCACAATCAA 58.224 55.556 4.39 0.00 44.19 2.57
2373 2437 2.983879 ATACCACTGCTGGGGCCAC 61.984 63.158 12.53 0.00 42.74 5.01
2374 2438 2.613696 ATACCACTGCTGGGGCCA 60.614 61.111 12.53 0.00 42.74 5.36
2375 2439 2.124151 CATACCACTGCTGGGGCC 60.124 66.667 12.53 0.00 42.74 5.80
2376 2440 1.452108 GACATACCACTGCTGGGGC 60.452 63.158 12.53 0.00 42.74 5.80
2377 2441 1.153369 CGACATACCACTGCTGGGG 60.153 63.158 10.87 10.87 42.74 4.96
2378 2442 0.179100 CTCGACATACCACTGCTGGG 60.179 60.000 0.00 0.00 42.74 4.45
2379 2443 0.532573 ACTCGACATACCACTGCTGG 59.467 55.000 0.00 0.00 44.26 4.85
2380 2444 1.067565 ACACTCGACATACCACTGCTG 60.068 52.381 0.00 0.00 0.00 4.41
2381 2445 1.257743 ACACTCGACATACCACTGCT 58.742 50.000 0.00 0.00 0.00 4.24
2382 2446 1.726791 CAACACTCGACATACCACTGC 59.273 52.381 0.00 0.00 0.00 4.40
2383 2447 3.026630 ACAACACTCGACATACCACTG 57.973 47.619 0.00 0.00 0.00 3.66
2384 2448 3.069016 TCAACAACACTCGACATACCACT 59.931 43.478 0.00 0.00 0.00 4.00
2385 2449 3.386486 TCAACAACACTCGACATACCAC 58.614 45.455 0.00 0.00 0.00 4.16
2386 2450 3.737032 TCAACAACACTCGACATACCA 57.263 42.857 0.00 0.00 0.00 3.25
2387 2451 3.185797 GGTTCAACAACACTCGACATACC 59.814 47.826 0.00 0.00 33.70 2.73
2388 2452 4.056050 AGGTTCAACAACACTCGACATAC 58.944 43.478 0.00 0.00 33.70 2.39
2389 2453 4.055360 CAGGTTCAACAACACTCGACATA 58.945 43.478 0.00 0.00 33.70 2.29
2390 2454 2.872245 CAGGTTCAACAACACTCGACAT 59.128 45.455 0.00 0.00 33.70 3.06
2391 2455 2.276201 CAGGTTCAACAACACTCGACA 58.724 47.619 0.00 0.00 33.70 4.35
2392 2456 1.597663 CCAGGTTCAACAACACTCGAC 59.402 52.381 0.00 0.00 33.70 4.20
2393 2457 1.483004 TCCAGGTTCAACAACACTCGA 59.517 47.619 0.00 0.00 33.70 4.04
2394 2458 1.948104 TCCAGGTTCAACAACACTCG 58.052 50.000 0.00 0.00 33.70 4.18
2395 2459 3.632145 ACAATCCAGGTTCAACAACACTC 59.368 43.478 0.00 0.00 33.70 3.51
2396 2460 3.631250 ACAATCCAGGTTCAACAACACT 58.369 40.909 0.00 0.00 33.70 3.55
2397 2461 5.460646 CATACAATCCAGGTTCAACAACAC 58.539 41.667 0.00 0.00 33.70 3.32
2398 2462 4.522405 CCATACAATCCAGGTTCAACAACA 59.478 41.667 0.00 0.00 33.70 3.33
2399 2463 4.764823 TCCATACAATCCAGGTTCAACAAC 59.235 41.667 0.00 0.00 0.00 3.32
2400 2464 4.991776 TCCATACAATCCAGGTTCAACAA 58.008 39.130 0.00 0.00 0.00 2.83
2401 2465 4.649267 TCCATACAATCCAGGTTCAACA 57.351 40.909 0.00 0.00 0.00 3.33
2402 2466 4.273480 CGATCCATACAATCCAGGTTCAAC 59.727 45.833 0.00 0.00 0.00 3.18
2403 2467 4.080582 ACGATCCATACAATCCAGGTTCAA 60.081 41.667 0.00 0.00 0.00 2.69
2404 2468 3.454447 ACGATCCATACAATCCAGGTTCA 59.546 43.478 0.00 0.00 0.00 3.18
2405 2469 4.073293 ACGATCCATACAATCCAGGTTC 57.927 45.455 0.00 0.00 0.00 3.62
2406 2470 4.199310 CAACGATCCATACAATCCAGGTT 58.801 43.478 0.00 0.00 0.00 3.50
2407 2471 3.199946 ACAACGATCCATACAATCCAGGT 59.800 43.478 0.00 0.00 0.00 4.00
2408 2472 3.808728 ACAACGATCCATACAATCCAGG 58.191 45.455 0.00 0.00 0.00 4.45
2409 2473 5.818136 AAACAACGATCCATACAATCCAG 57.182 39.130 0.00 0.00 0.00 3.86
2410 2474 7.873719 ATAAAACAACGATCCATACAATCCA 57.126 32.000 0.00 0.00 0.00 3.41
2429 2493 6.530887 GCTTTCGCCCCGTTTTATAAATAAAA 59.469 34.615 0.00 4.20 39.24 1.52
2430 2494 6.035217 GCTTTCGCCCCGTTTTATAAATAAA 58.965 36.000 0.00 0.00 0.00 1.40
2431 2495 5.580661 GCTTTCGCCCCGTTTTATAAATAA 58.419 37.500 0.00 0.00 0.00 1.40
2432 2496 5.172460 GCTTTCGCCCCGTTTTATAAATA 57.828 39.130 0.00 0.00 0.00 1.40
2433 2497 4.036567 GCTTTCGCCCCGTTTTATAAAT 57.963 40.909 0.00 0.00 0.00 1.40
2434 2498 3.490800 GCTTTCGCCCCGTTTTATAAA 57.509 42.857 0.00 0.00 0.00 1.40
2447 2511 3.242576 GCTCTCTTGAAATAGGCTTTCGC 60.243 47.826 0.00 0.00 0.00 4.70
2448 2512 3.311048 GGCTCTCTTGAAATAGGCTTTCG 59.689 47.826 0.00 0.00 0.00 3.46
2449 2513 4.265073 TGGCTCTCTTGAAATAGGCTTTC 58.735 43.478 0.00 0.00 35.68 2.62
2450 2514 4.268359 CTGGCTCTCTTGAAATAGGCTTT 58.732 43.478 0.00 0.00 35.68 3.51
2451 2515 3.371380 CCTGGCTCTCTTGAAATAGGCTT 60.371 47.826 0.00 0.00 35.68 4.35
2452 2516 2.172293 CCTGGCTCTCTTGAAATAGGCT 59.828 50.000 0.00 0.00 35.68 4.58
2453 2517 2.570135 CCTGGCTCTCTTGAAATAGGC 58.430 52.381 0.00 0.00 35.26 3.93
2454 2518 2.747799 GCCCTGGCTCTCTTGAAATAGG 60.748 54.545 0.00 0.00 38.26 2.57
2455 2519 2.092753 TGCCCTGGCTCTCTTGAAATAG 60.093 50.000 9.97 0.00 42.51 1.73
2456 2520 1.915489 TGCCCTGGCTCTCTTGAAATA 59.085 47.619 9.97 0.00 42.51 1.40
2457 2521 0.700564 TGCCCTGGCTCTCTTGAAAT 59.299 50.000 9.97 0.00 42.51 2.17
2458 2522 0.478072 TTGCCCTGGCTCTCTTGAAA 59.522 50.000 9.97 0.00 42.51 2.69
2459 2523 0.037303 CTTGCCCTGGCTCTCTTGAA 59.963 55.000 9.97 0.00 42.51 2.69
2460 2524 0.837691 TCTTGCCCTGGCTCTCTTGA 60.838 55.000 9.97 0.00 42.51 3.02
2461 2525 0.392729 CTCTTGCCCTGGCTCTCTTG 60.393 60.000 9.97 0.00 42.51 3.02
2462 2526 0.839853 ACTCTTGCCCTGGCTCTCTT 60.840 55.000 9.97 0.00 42.51 2.85
2463 2527 1.229464 ACTCTTGCCCTGGCTCTCT 60.229 57.895 9.97 0.00 42.51 3.10
2464 2528 1.078567 CACTCTTGCCCTGGCTCTC 60.079 63.158 9.97 0.00 42.51 3.20
2465 2529 1.537397 TCACTCTTGCCCTGGCTCT 60.537 57.895 9.97 0.00 42.51 4.09
2466 2530 1.078567 CTCACTCTTGCCCTGGCTC 60.079 63.158 9.97 0.00 42.51 4.70
2467 2531 3.076092 CTCACTCTTGCCCTGGCT 58.924 61.111 9.97 0.00 42.51 4.75
2468 2532 2.749441 GCTCACTCTTGCCCTGGC 60.749 66.667 0.00 0.00 42.35 4.85
2469 2533 2.045536 GGCTCACTCTTGCCCTGG 60.046 66.667 0.00 0.00 43.11 4.45
2470 2534 2.435586 CGGCTCACTCTTGCCCTG 60.436 66.667 0.00 0.00 45.90 4.45
2471 2535 4.400961 GCGGCTCACTCTTGCCCT 62.401 66.667 0.00 0.00 45.90 5.19
2472 2536 4.704833 TGCGGCTCACTCTTGCCC 62.705 66.667 0.00 0.00 45.90 5.36
2473 2537 2.260869 TTTGCGGCTCACTCTTGCC 61.261 57.895 0.00 0.00 45.25 4.52
2474 2538 1.081840 GTTTGCGGCTCACTCTTGC 60.082 57.895 0.00 0.00 0.00 4.01
2475 2539 1.205064 CGTTTGCGGCTCACTCTTG 59.795 57.895 0.00 0.00 0.00 3.02
2476 2540 0.531974 TTCGTTTGCGGCTCACTCTT 60.532 50.000 0.00 0.00 38.89 2.85
2477 2541 0.320771 ATTCGTTTGCGGCTCACTCT 60.321 50.000 0.00 0.00 38.89 3.24
2478 2542 1.355971 TATTCGTTTGCGGCTCACTC 58.644 50.000 0.00 0.00 38.89 3.51
2479 2543 1.732259 CTTATTCGTTTGCGGCTCACT 59.268 47.619 0.00 0.00 38.89 3.41
2480 2544 1.463444 ACTTATTCGTTTGCGGCTCAC 59.537 47.619 0.00 0.00 38.89 3.51
2481 2545 1.803334 ACTTATTCGTTTGCGGCTCA 58.197 45.000 0.00 0.00 38.89 4.26
2482 2546 4.330740 TTTACTTATTCGTTTGCGGCTC 57.669 40.909 0.00 0.00 38.89 4.70
2483 2547 4.957759 ATTTACTTATTCGTTTGCGGCT 57.042 36.364 0.00 0.00 38.89 5.52
2484 2548 6.021232 GGTAAATTTACTTATTCGTTTGCGGC 60.021 38.462 23.89 0.00 34.98 6.53
2485 2549 6.193228 CGGTAAATTTACTTATTCGTTTGCGG 59.807 38.462 23.89 0.00 34.98 5.69
2486 2550 6.193228 CCGGTAAATTTACTTATTCGTTTGCG 59.807 38.462 23.89 15.06 35.27 4.85
2487 2551 7.242783 TCCGGTAAATTTACTTATTCGTTTGC 58.757 34.615 23.89 5.75 34.16 3.68
2488 2552 9.054191 GTTCCGGTAAATTTACTTATTCGTTTG 57.946 33.333 23.89 9.26 34.16 2.93
2489 2553 8.236586 GGTTCCGGTAAATTTACTTATTCGTTT 58.763 33.333 23.89 0.00 34.16 3.60
2490 2554 7.412891 CGGTTCCGGTAAATTTACTTATTCGTT 60.413 37.037 23.89 0.00 34.16 3.85
2491 2555 6.035975 CGGTTCCGGTAAATTTACTTATTCGT 59.964 38.462 23.89 0.00 34.16 3.85
2492 2556 6.413269 CGGTTCCGGTAAATTTACTTATTCG 58.587 40.000 23.89 18.35 34.16 3.34
2493 2557 6.718388 CCGGTTCCGGTAAATTTACTTATTC 58.282 40.000 23.89 13.57 43.86 1.75
2494 2558 6.682423 CCGGTTCCGGTAAATTTACTTATT 57.318 37.500 23.89 0.00 43.86 1.40
2509 2573 1.065928 CTGCTAGCTACCGGTTCCG 59.934 63.158 15.04 2.66 0.00 4.30
2510 2574 0.179108 CACTGCTAGCTACCGGTTCC 60.179 60.000 15.04 3.83 0.00 3.62
2511 2575 0.815734 TCACTGCTAGCTACCGGTTC 59.184 55.000 15.04 5.24 0.00 3.62
2512 2576 1.204941 CTTCACTGCTAGCTACCGGTT 59.795 52.381 15.04 0.00 0.00 4.44
2526 2590 0.391263 GGAACGGCCGATTCTTCACT 60.391 55.000 35.90 1.64 0.00 3.41
2593 2657 3.565482 GGTCTTGTCTGATGAGCAAAACA 59.435 43.478 0.00 0.00 0.00 2.83
2594 2658 3.057946 GGGTCTTGTCTGATGAGCAAAAC 60.058 47.826 8.75 0.00 0.00 2.43
2598 2662 0.247460 CGGGTCTTGTCTGATGAGCA 59.753 55.000 8.75 0.00 0.00 4.26
2599 2663 0.247736 ACGGGTCTTGTCTGATGAGC 59.752 55.000 0.00 0.00 0.00 4.26
2600 2664 2.751166 AACGGGTCTTGTCTGATGAG 57.249 50.000 0.00 0.00 0.00 2.90
2601 2665 3.138304 CAAAACGGGTCTTGTCTGATGA 58.862 45.455 0.00 0.00 0.00 2.92
2602 2666 2.226437 CCAAAACGGGTCTTGTCTGATG 59.774 50.000 0.00 0.00 0.00 3.07
2603 2667 2.105821 TCCAAAACGGGTCTTGTCTGAT 59.894 45.455 0.00 0.00 34.36 2.90
2604 2668 1.487142 TCCAAAACGGGTCTTGTCTGA 59.513 47.619 0.00 0.00 34.36 3.27
2605 2669 1.961793 TCCAAAACGGGTCTTGTCTG 58.038 50.000 0.00 0.00 34.36 3.51
2607 2671 3.404899 TGTATCCAAAACGGGTCTTGTC 58.595 45.455 0.00 0.00 34.36 3.18
2616 2912 7.826260 AATTAGCCAAAATGTATCCAAAACG 57.174 32.000 0.00 0.00 0.00 3.60
2638 2934 9.520204 CACTGACTGAAATTGTAAACTTGAAAT 57.480 29.630 0.00 0.00 0.00 2.17
2645 2941 7.044966 CGTGAAACACTGACTGAAATTGTAAAC 60.045 37.037 0.00 0.00 35.74 2.01
2649 2945 4.394920 ACGTGAAACACTGACTGAAATTGT 59.605 37.500 0.00 0.00 35.74 2.71
2650 2946 4.908736 ACGTGAAACACTGACTGAAATTG 58.091 39.130 0.00 0.00 35.74 2.32
2651 2947 5.560966 AACGTGAAACACTGACTGAAATT 57.439 34.783 0.00 0.00 35.74 1.82
2652 2948 5.583061 TGTAACGTGAAACACTGACTGAAAT 59.417 36.000 0.00 0.00 35.74 2.17
2715 3012 7.748847 ACTGTGCGAAATAGGTATTTTACAAG 58.251 34.615 0.00 3.23 36.13 3.16
2734 3031 7.593825 ACTAAAATCCATGTTTTCTACTGTGC 58.406 34.615 0.00 0.00 33.62 4.57
2843 3141 6.436843 TCAGTTTCTTCAAAGGAGTGAAAC 57.563 37.500 0.00 0.00 42.29 2.78
2852 3150 9.956720 AAATAAGTGACATCAGTTTCTTCAAAG 57.043 29.630 7.25 0.00 39.89 2.77
3087 3421 8.739039 TGACACATATTTCGGAGATTTGAAAAT 58.261 29.630 6.08 0.00 37.60 1.82
3089 3423 7.680442 TGACACATATTTCGGAGATTTGAAA 57.320 32.000 6.08 0.00 38.35 2.69
3090 3424 7.336679 ACATGACACATATTTCGGAGATTTGAA 59.663 33.333 0.00 0.00 35.04 2.69
3091 3425 6.823182 ACATGACACATATTTCGGAGATTTGA 59.177 34.615 0.00 0.00 35.04 2.69
3092 3426 6.908820 CACATGACACATATTTCGGAGATTTG 59.091 38.462 0.00 0.00 35.04 2.32
3093 3427 6.599244 ACACATGACACATATTTCGGAGATTT 59.401 34.615 0.00 0.00 35.04 2.17
3096 3430 4.869861 CACACATGACACATATTTCGGAGA 59.130 41.667 0.00 0.00 0.00 3.71
3098 3449 4.391523 CACACACATGACACATATTTCGGA 59.608 41.667 0.00 0.00 0.00 4.55
3211 3565 8.771920 TGTCAATTGACTTAATCTCGTGTATT 57.228 30.769 32.57 0.00 44.99 1.89
3219 3573 8.131100 CAGTGTGTTTGTCAATTGACTTAATCT 58.869 33.333 32.57 20.29 44.99 2.40
3228 3582 8.578308 ACATATTTCAGTGTGTTTGTCAATTG 57.422 30.769 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.