Multiple sequence alignment - TraesCS6D01G382700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G382700 chr6D 100.000 4991 0 0 1 4991 462278659 462273669 0.000000e+00 9217.0
1 TraesCS6D01G382700 chr6D 93.333 75 3 2 3040 3113 462275547 462275620 5.280000e-20 110.0
2 TraesCS6D01G382700 chr6A 88.295 2264 157 37 830 3041 609112840 609110633 0.000000e+00 2614.0
3 TraesCS6D01G382700 chr6A 88.326 1619 102 45 3128 4725 609110618 609109066 0.000000e+00 1862.0
4 TraesCS6D01G382700 chr6A 82.281 491 74 11 8 487 617061803 617062291 3.600000e-111 412.0
5 TraesCS6D01G382700 chr6A 87.833 263 14 6 4734 4991 609108551 609108302 4.890000e-75 292.0
6 TraesCS6D01G382700 chr6A 94.915 118 4 2 637 753 609112959 609112843 3.070000e-42 183.0
7 TraesCS6D01G382700 chr6A 84.783 138 21 0 494 631 100428923 100429060 6.740000e-29 139.0
8 TraesCS6D01G382700 chr6B 82.242 1695 208 51 1338 3013 704739754 704741374 0.000000e+00 1376.0
9 TraesCS6D01G382700 chr6B 87.743 873 67 18 3163 4018 704741389 704742238 0.000000e+00 983.0
10 TraesCS6D01G382700 chr6B 84.008 988 115 19 934 1894 704738671 704739642 0.000000e+00 909.0
11 TraesCS6D01G382700 chr6B 82.474 679 75 19 2033 2698 704670340 704670987 5.650000e-154 555.0
12 TraesCS6D01G382700 chr6B 80.831 433 35 26 4258 4655 704742345 704742764 3.780000e-76 296.0
13 TraesCS6D01G382700 chr6B 79.614 466 52 25 945 1393 704687634 704688073 1.360000e-75 294.0
14 TraesCS6D01G382700 chr6B 91.803 183 15 0 2849 3031 69431639 69431821 6.410000e-64 255.0
15 TraesCS6D01G382700 chr6B 88.325 197 15 5 2811 3007 704671053 704671241 3.890000e-56 230.0
16 TraesCS6D01G382700 chr6B 96.000 125 4 1 4868 4991 704743036 704743160 8.470000e-48 202.0
17 TraesCS6D01G382700 chr6B 100.000 34 0 0 4235 4268 704742310 704742343 4.170000e-06 63.9
18 TraesCS6D01G382700 chr2D 83.984 487 60 14 8 486 472480214 472480690 7.620000e-123 451.0
19 TraesCS6D01G382700 chr2D 94.660 206 10 1 3709 3914 637067403 637067199 8.060000e-83 318.0
20 TraesCS6D01G382700 chr2D 93.689 206 12 1 3709 3914 588835412 588835616 1.750000e-79 307.0
21 TraesCS6D01G382700 chr2D 88.189 127 10 3 3213 3336 588835108 588835232 4.030000e-31 147.0
22 TraesCS6D01G382700 chr4A 80.707 622 83 27 36 631 5192256 5191646 2.740000e-122 449.0
23 TraesCS6D01G382700 chr3D 87.080 387 23 12 3552 3914 505900348 505900731 3.600000e-111 412.0
24 TraesCS6D01G382700 chr3D 79.245 636 82 23 22 631 562531461 562530850 1.010000e-106 398.0
25 TraesCS6D01G382700 chr3D 80.457 481 77 15 22 491 4350895 4350421 7.950000e-93 351.0
26 TraesCS6D01G382700 chr3D 91.129 124 9 2 3213 3336 505900229 505900350 3.090000e-37 167.0
27 TraesCS6D01G382700 chr3D 85.714 140 18 1 494 631 231132961 231132822 4.030000e-31 147.0
28 TraesCS6D01G382700 chr2B 80.066 607 71 30 66 631 667127924 667127327 6.020000e-109 405.0
29 TraesCS6D01G382700 chr2B 77.580 281 39 14 1870 2130 97480350 97480626 1.120000e-31 148.0
30 TraesCS6D01G382700 chr2B 92.157 102 8 0 3244 3345 416250281 416250180 1.450000e-30 145.0
31 TraesCS6D01G382700 chr5D 86.340 388 26 10 3552 3914 448352389 448352774 1.010000e-106 398.0
32 TraesCS6D01G382700 chr3A 81.450 469 68 18 27 488 443197264 443197720 2.840000e-97 366.0
33 TraesCS6D01G382700 chr3A 77.934 639 82 28 22 631 697637582 697636974 1.330000e-90 344.0
34 TraesCS6D01G382700 chr3A 93.204 206 13 1 3709 3914 71340804 71341008 8.120000e-78 302.0
35 TraesCS6D01G382700 chr3A 90.860 186 17 0 2849 3034 626839726 626839541 2.980000e-62 250.0
36 TraesCS6D01G382700 chr3A 84.375 96 14 1 2691 2786 626839842 626839748 5.320000e-15 93.5
37 TraesCS6D01G382700 chr1A 77.829 645 86 34 27 631 541450942 541450315 3.700000e-91 346.0
38 TraesCS6D01G382700 chr1A 81.710 421 62 13 72 481 290366855 290366439 2.230000e-88 337.0
39 TraesCS6D01G382700 chr1A 92.233 206 15 1 3709 3914 232830767 232830971 1.760000e-74 291.0
40 TraesCS6D01G382700 chr1A 92.308 182 14 0 2849 3030 364017623 364017442 4.960000e-65 259.0
41 TraesCS6D01G382700 chr1A 91.398 186 16 0 2849 3034 11439412 11439227 6.410000e-64 255.0
42 TraesCS6D01G382700 chr1A 87.097 124 14 2 3213 3336 420432527 420432648 6.740000e-29 139.0
43 TraesCS6D01G382700 chr1A 86.458 96 12 1 2691 2786 11439528 11439434 2.460000e-18 104.0
44 TraesCS6D01G382700 chr1A 86.458 96 12 1 2691 2786 364017739 364017645 2.460000e-18 104.0
45 TraesCS6D01G382700 chr3B 77.358 636 96 26 27 626 817599509 817598886 2.880000e-87 333.0
46 TraesCS6D01G382700 chr3B 79.701 468 78 16 8 466 741387170 741386711 6.230000e-84 322.0
47 TraesCS6D01G382700 chr3B 87.850 214 21 4 2829 3039 357046242 357046031 3.860000e-61 246.0
48 TraesCS6D01G382700 chr3B 88.406 138 14 2 495 631 42167972 42167836 1.110000e-36 165.0
49 TraesCS6D01G382700 chrUn 79.661 472 73 18 24 487 35648254 35647798 8.060000e-83 318.0
50 TraesCS6D01G382700 chr7D 77.049 610 88 32 63 631 138504909 138505507 2.260000e-78 303.0
51 TraesCS6D01G382700 chr7B 92.157 204 15 1 3709 3912 645904226 645904428 2.270000e-73 287.0
52 TraesCS6D01G382700 chr7B 88.710 124 12 2 3213 3336 697732170 697732049 3.110000e-32 150.0
53 TraesCS6D01G382700 chr4D 91.329 173 15 0 2855 3027 489564093 489564265 2.320000e-58 237.0
54 TraesCS6D01G382700 chr4B 86.175 217 26 2 2820 3032 477494088 477494304 1.080000e-56 231.0
55 TraesCS6D01G382700 chr5A 88.710 124 12 2 3213 3336 545929777 545929656 3.110000e-32 150.0
56 TraesCS6D01G382700 chr5A 87.903 124 13 2 3213 3336 702533838 702533959 1.450000e-30 145.0
57 TraesCS6D01G382700 chr2A 87.402 127 12 3 497 622 773070977 773071100 5.210000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G382700 chr6D 462273669 462278659 4990 True 9217.000000 9217 100.000000 1 4991 1 chr6D.!!$R1 4990
1 TraesCS6D01G382700 chr6A 609108302 609112959 4657 True 1237.750000 2614 89.842250 637 4991 4 chr6A.!!$R1 4354
2 TraesCS6D01G382700 chr6B 704738671 704743160 4489 False 638.316667 1376 88.470667 934 4991 6 chr6B.!!$F4 4057
3 TraesCS6D01G382700 chr6B 704670340 704671241 901 False 392.500000 555 85.399500 2033 3007 2 chr6B.!!$F3 974
4 TraesCS6D01G382700 chr2D 588835108 588835616 508 False 227.000000 307 90.939000 3213 3914 2 chr2D.!!$F2 701
5 TraesCS6D01G382700 chr4A 5191646 5192256 610 True 449.000000 449 80.707000 36 631 1 chr4A.!!$R1 595
6 TraesCS6D01G382700 chr3D 562530850 562531461 611 True 398.000000 398 79.245000 22 631 1 chr3D.!!$R3 609
7 TraesCS6D01G382700 chr3D 505900229 505900731 502 False 289.500000 412 89.104500 3213 3914 2 chr3D.!!$F1 701
8 TraesCS6D01G382700 chr2B 667127327 667127924 597 True 405.000000 405 80.066000 66 631 1 chr2B.!!$R2 565
9 TraesCS6D01G382700 chr3A 697636974 697637582 608 True 344.000000 344 77.934000 22 631 1 chr3A.!!$R1 609
10 TraesCS6D01G382700 chr1A 541450315 541450942 627 True 346.000000 346 77.829000 27 631 1 chr1A.!!$R2 604
11 TraesCS6D01G382700 chr3B 817598886 817599509 623 True 333.000000 333 77.358000 27 626 1 chr3B.!!$R4 599
12 TraesCS6D01G382700 chr7D 138504909 138505507 598 False 303.000000 303 77.049000 63 631 1 chr7D.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 996 0.179015 TCCAGCCCAAACGTGCTTTA 60.179 50.0 0.00 0.00 35.12 1.85 F
1735 2566 0.106335 CTAGGGATCAGCCACTGCAG 59.894 60.0 13.48 13.48 41.13 4.41 F
3060 3920 0.101399 CTCCCTCCGATCACTTGTCG 59.899 60.0 0.00 0.00 38.75 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2951 0.250858 TGGCAAGGTCACTGGTCATG 60.251 55.0 0.0 0.0 23.75 3.07 R
3041 3901 0.101399 CGACAAGTGATCGGAGGGAG 59.899 60.0 0.0 0.0 35.92 4.30 R
4063 4975 0.175760 TTGCCGTCACTCCTATCTGC 59.824 55.0 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 187 8.482429 AGTAAACTATTTTGTAAGTCACGAACG 58.518 33.333 0.00 0.00 29.77 3.95
169 192 6.601741 ATTTTGTAAGTCACGAACGGTTTA 57.398 33.333 0.00 0.00 29.77 2.01
525 604 1.009389 GGGCGAACTGTGTCTTCTCG 61.009 60.000 0.00 0.00 0.00 4.04
631 716 4.134563 CACTTATAGGTGGTATTGGTGGC 58.865 47.826 7.09 0.00 33.95 5.01
632 717 3.783642 ACTTATAGGTGGTATTGGTGGCA 59.216 43.478 0.00 0.00 0.00 4.92
633 718 4.415512 ACTTATAGGTGGTATTGGTGGCAT 59.584 41.667 0.00 0.00 0.00 4.40
634 719 3.971468 ATAGGTGGTATTGGTGGCATT 57.029 42.857 0.00 0.00 0.00 3.56
635 720 1.851304 AGGTGGTATTGGTGGCATTG 58.149 50.000 0.00 0.00 0.00 2.82
691 777 8.761575 TCCATGAACAATTTAATCTTCTTTGC 57.238 30.769 0.00 0.00 0.00 3.68
748 834 3.214328 GCCCCATACACCTTAAGACATG 58.786 50.000 3.36 2.03 0.00 3.21
752 838 5.714806 CCCCATACACCTTAAGACATGTTTT 59.285 40.000 3.36 6.85 0.00 2.43
753 839 6.210584 CCCCATACACCTTAAGACATGTTTTT 59.789 38.462 6.97 4.51 0.00 1.94
824 910 7.663043 TTTTAGGGGTAAGACATGTTTTTGT 57.337 32.000 6.97 0.00 0.00 2.83
825 911 6.642707 TTAGGGGTAAGACATGTTTTTGTG 57.357 37.500 6.97 0.00 0.00 3.33
826 912 4.542697 AGGGGTAAGACATGTTTTTGTGT 58.457 39.130 6.97 0.00 0.00 3.72
827 913 4.340950 AGGGGTAAGACATGTTTTTGTGTG 59.659 41.667 6.97 0.00 0.00 3.82
828 914 4.098807 GGGGTAAGACATGTTTTTGTGTGT 59.901 41.667 6.97 0.00 0.00 3.72
842 928 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
903 989 2.566952 GATCAAATCCAGCCCAAACG 57.433 50.000 0.00 0.00 0.00 3.60
904 990 1.818674 GATCAAATCCAGCCCAAACGT 59.181 47.619 0.00 0.00 0.00 3.99
906 992 0.667184 CAAATCCAGCCCAAACGTGC 60.667 55.000 0.00 0.00 0.00 5.34
907 993 0.827507 AAATCCAGCCCAAACGTGCT 60.828 50.000 0.00 0.00 38.67 4.40
909 995 0.827507 ATCCAGCCCAAACGTGCTTT 60.828 50.000 0.00 0.00 35.12 3.51
910 996 0.179015 TCCAGCCCAAACGTGCTTTA 60.179 50.000 0.00 0.00 35.12 1.85
911 997 0.887933 CCAGCCCAAACGTGCTTTAT 59.112 50.000 0.00 0.00 35.12 1.40
912 998 1.272212 CCAGCCCAAACGTGCTTTATT 59.728 47.619 0.00 0.00 35.12 1.40
913 999 2.288763 CCAGCCCAAACGTGCTTTATTT 60.289 45.455 0.00 0.00 35.12 1.40
914 1000 2.730928 CAGCCCAAACGTGCTTTATTTG 59.269 45.455 0.00 0.00 35.12 2.32
915 1001 2.364002 AGCCCAAACGTGCTTTATTTGT 59.636 40.909 0.00 0.00 32.94 2.83
916 1002 2.729360 GCCCAAACGTGCTTTATTTGTC 59.271 45.455 0.00 0.00 32.53 3.18
930 1016 8.564574 TGCTTTATTTGTCTGTTTACTGTTAGG 58.435 33.333 0.00 0.00 0.00 2.69
948 1034 2.183679 AGGTTCACAGCCCAAACAAAA 58.816 42.857 0.00 0.00 0.00 2.44
963 1049 6.315891 CCCAAACAAAAGCAGAAGAATCAAAA 59.684 34.615 0.00 0.00 0.00 2.44
1260 1376 3.912907 CGCTCTACCCCGCCGATT 61.913 66.667 0.00 0.00 0.00 3.34
1275 1391 2.633488 CCGATTCCTCTCCTTTCCAAC 58.367 52.381 0.00 0.00 0.00 3.77
1397 2203 2.043992 TGTGTGGCAGTGTTACCTAGT 58.956 47.619 0.00 0.00 0.00 2.57
1408 2214 2.493278 TGTTACCTAGTAGTTGGACGCC 59.507 50.000 4.95 0.00 0.00 5.68
1445 2252 0.457853 GCGCGGTTAGAGTGTCATGA 60.458 55.000 8.83 0.00 0.00 3.07
1490 2297 4.080919 TGAGATCGAGATGTGGATTTGGTT 60.081 41.667 0.00 0.00 0.00 3.67
1494 2301 5.160607 TCGAGATGTGGATTTGGTTAACT 57.839 39.130 5.42 0.00 0.00 2.24
1512 2319 6.482524 GTTAACTTGAGGGGATTTCTAGGTT 58.517 40.000 0.00 0.00 0.00 3.50
1514 2321 4.175962 ACTTGAGGGGATTTCTAGGTTGA 58.824 43.478 0.00 0.00 0.00 3.18
1531 2338 4.019231 AGGTTGAGATTAGGGTTTCCTGTC 60.019 45.833 0.00 0.00 44.61 3.51
1538 2345 2.735259 AGGGTTTCCTGTCTCCCTTA 57.265 50.000 0.00 0.00 46.99 2.69
1542 2349 3.116174 GGTTTCCTGTCTCCCTTATCCT 58.884 50.000 0.00 0.00 0.00 3.24
1547 2354 5.483174 TCCTGTCTCCCTTATCCTAGAAA 57.517 43.478 0.00 0.00 0.00 2.52
1548 2355 5.850278 TCCTGTCTCCCTTATCCTAGAAAA 58.150 41.667 0.00 0.00 0.00 2.29
1549 2356 6.453476 TCCTGTCTCCCTTATCCTAGAAAAT 58.547 40.000 0.00 0.00 0.00 1.82
1551 2358 5.930135 TGTCTCCCTTATCCTAGAAAATGC 58.070 41.667 0.00 0.00 0.00 3.56
1552 2359 5.428457 TGTCTCCCTTATCCTAGAAAATGCA 59.572 40.000 0.00 0.00 0.00 3.96
1554 2361 6.484977 GTCTCCCTTATCCTAGAAAATGCAAG 59.515 42.308 0.00 0.00 0.00 4.01
1555 2362 5.694995 TCCCTTATCCTAGAAAATGCAAGG 58.305 41.667 0.00 0.00 0.00 3.61
1579 2386 1.212688 AGTGCATTTGGATCGGATGGA 59.787 47.619 0.00 0.00 0.00 3.41
1582 2389 2.624364 TGCATTTGGATCGGATGGATTG 59.376 45.455 0.00 0.00 34.82 2.67
1599 2411 6.222038 TGGATTGAGATTAGTGACTGTACC 57.778 41.667 0.00 0.00 0.00 3.34
1610 2422 1.816835 TGACTGTACCGGCTAGAACAG 59.183 52.381 0.00 10.50 43.90 3.16
1669 2481 7.755618 AGCTAGACTAGGAACAGATAGAGATT 58.244 38.462 11.48 0.00 0.00 2.40
1709 2535 4.177165 TGTAGCTTGTTTTGCCATGATG 57.823 40.909 0.00 0.00 0.00 3.07
1727 2553 3.840666 TGATGATAACCCTAGGGATCAGC 59.159 47.826 35.38 31.27 36.65 4.26
1728 2554 2.621070 TGATAACCCTAGGGATCAGCC 58.379 52.381 35.38 16.91 38.96 4.85
1735 2566 0.106335 CTAGGGATCAGCCACTGCAG 59.894 60.000 13.48 13.48 41.13 4.41
1813 2648 6.381481 TGGCACATAGAAGATGCTTTATTG 57.619 37.500 0.00 0.00 39.38 1.90
1814 2649 5.887598 TGGCACATAGAAGATGCTTTATTGT 59.112 36.000 0.00 0.00 39.38 2.71
1872 2707 5.578005 TTTAGATGAGTTGTAGAGGTCCG 57.422 43.478 0.00 0.00 0.00 4.79
1888 2723 2.095919 GGTCCGAAACCGAATGTCTTTG 60.096 50.000 0.00 0.00 38.58 2.77
2001 2838 4.654091 ATTAATGCCATGTGCCAAGTAC 57.346 40.909 4.07 0.00 40.16 2.73
2028 2865 5.964758 TGTTGTTCACTTGATTTTTCTGCT 58.035 33.333 0.00 0.00 0.00 4.24
2046 2883 3.076621 TGCTCATTGTTTGCTAGACCTG 58.923 45.455 0.00 0.00 0.00 4.00
2157 3011 8.832521 CAACTTGTGTTACCATTACTCTTAACA 58.167 33.333 0.00 0.00 34.60 2.41
2220 3075 7.676004 TCTTGTAATCTGGTCTTACATCACAA 58.324 34.615 0.00 0.00 38.50 3.33
2286 3143 1.678101 GCAAGAATATGGGTCCTGTGC 59.322 52.381 0.00 0.00 0.00 4.57
2307 3164 6.759827 TGTGCGACTACTTTTTATTATCTCCC 59.240 38.462 0.00 0.00 0.00 4.30
2331 3188 6.881065 CCTTTGTCTGAAGGTTCTGATTCATA 59.119 38.462 3.02 0.00 41.06 2.15
2342 3199 5.645497 GGTTCTGATTCATACAGCTGTTCTT 59.355 40.000 27.06 7.79 35.61 2.52
2418 3275 4.921470 TGAACTCTTGTAGCAATAACGC 57.079 40.909 0.00 0.00 0.00 4.84
2436 3296 2.241722 CGCAGTTCTTTTATTGCCACG 58.758 47.619 0.00 0.00 33.10 4.94
2444 3304 3.505680 TCTTTTATTGCCACGCAGTCATT 59.494 39.130 0.00 0.00 41.61 2.57
2453 3313 3.375299 GCCACGCAGTCATTTTCTAAGAT 59.625 43.478 0.00 0.00 41.61 2.40
2460 3320 7.094634 ACGCAGTCATTTTCTAAGATCAATGTT 60.095 33.333 0.00 0.00 29.74 2.71
2485 3345 2.097038 CGCAGTTCCTGAGAAGCGG 61.097 63.158 0.00 0.00 40.84 5.52
2644 3504 0.250234 TCAAGCCAGAGACAATCGGG 59.750 55.000 0.00 0.00 45.39 5.14
2655 3515 2.493278 AGACAATCGGGCAATTCTTTGG 59.507 45.455 0.00 0.00 33.22 3.28
2657 3517 2.231235 ACAATCGGGCAATTCTTTGGTC 59.769 45.455 0.00 0.00 33.22 4.02
2659 3519 1.533625 TCGGGCAATTCTTTGGTCTG 58.466 50.000 0.00 0.00 33.22 3.51
2683 3543 0.403271 AGGCTGCAATGTCTTCACCT 59.597 50.000 0.50 0.00 0.00 4.00
2689 3549 1.612726 GCAATGTCTTCACCTGGAGCT 60.613 52.381 0.00 0.00 0.00 4.09
2698 3558 3.616956 TCACCTGGAGCTTGTAATGAG 57.383 47.619 0.00 0.00 0.00 2.90
2707 3567 3.341823 AGCTTGTAATGAGCCTTCTGTG 58.658 45.455 0.00 0.00 41.03 3.66
2710 3570 0.375106 GTAATGAGCCTTCTGTGCGC 59.625 55.000 0.00 0.00 0.00 6.09
2726 3586 1.889105 CGCGCAGATTACCAGGCAT 60.889 57.895 8.75 0.00 0.00 4.40
2760 3620 2.834549 CTGAGGGTGTAACAGAGGTGAT 59.165 50.000 0.00 0.00 39.98 3.06
2773 3633 5.930135 ACAGAGGTGATGTTTCTACTGTTT 58.070 37.500 0.00 0.00 34.42 2.83
2777 3637 8.836413 CAGAGGTGATGTTTCTACTGTTTTTAA 58.164 33.333 0.00 0.00 0.00 1.52
2802 3662 8.798975 AAATAAATACTACTCCCTCAGATCCA 57.201 34.615 0.00 0.00 0.00 3.41
2803 3663 8.980832 AATAAATACTACTCCCTCAGATCCAT 57.019 34.615 0.00 0.00 0.00 3.41
2806 3666 7.969690 AATACTACTCCCTCAGATCCATATG 57.030 40.000 0.00 0.00 0.00 1.78
2807 3667 4.682563 ACTACTCCCTCAGATCCATATGG 58.317 47.826 16.25 16.25 0.00 2.74
2840 3700 9.927668 TGACAAAATCATAATTTCCTTCCTTTC 57.072 29.630 0.00 0.00 33.93 2.62
2853 3713 2.260844 TCCTTTCTGTGCAGTTCTGG 57.739 50.000 0.00 0.00 0.00 3.86
2857 3717 3.499918 CCTTTCTGTGCAGTTCTGGTAAG 59.500 47.826 0.00 0.00 0.00 2.34
2863 3723 2.162408 GTGCAGTTCTGGTAAGCCATTC 59.838 50.000 0.00 0.00 45.05 2.67
2976 3836 5.285651 GTGGCTAATGATCTCTGTACTGAC 58.714 45.833 0.00 0.00 0.00 3.51
3009 3869 4.271776 GTGGTAAGTGTACTGTGGTGAAAC 59.728 45.833 0.00 0.00 0.00 2.78
3020 3880 0.310543 TGGTGAAACGCTGATGTTGC 59.689 50.000 0.00 0.00 38.12 4.17
3027 3887 5.402270 GTGAAACGCTGATGTTGCTTATTTT 59.598 36.000 0.00 0.00 31.10 1.82
3034 3894 6.385033 GCTGATGTTGCTTATTTTCTCAACT 58.615 36.000 0.00 0.00 39.44 3.16
3041 3901 8.342634 TGTTGCTTATTTTCTCAACTCAAGTAC 58.657 33.333 0.00 0.00 39.44 2.73
3042 3902 8.560374 GTTGCTTATTTTCTCAACTCAAGTACT 58.440 33.333 0.00 0.00 36.72 2.73
3043 3903 8.311650 TGCTTATTTTCTCAACTCAAGTACTC 57.688 34.615 0.00 0.00 0.00 2.59
3044 3904 7.387948 TGCTTATTTTCTCAACTCAAGTACTCC 59.612 37.037 0.00 0.00 0.00 3.85
3045 3905 7.148390 GCTTATTTTCTCAACTCAAGTACTCCC 60.148 40.741 0.00 0.00 0.00 4.30
3046 3906 5.888982 TTTTCTCAACTCAAGTACTCCCT 57.111 39.130 0.00 0.00 0.00 4.20
3047 3907 5.470047 TTTCTCAACTCAAGTACTCCCTC 57.530 43.478 0.00 0.00 0.00 4.30
3048 3908 3.432378 TCTCAACTCAAGTACTCCCTCC 58.568 50.000 0.00 0.00 0.00 4.30
3050 3910 2.168496 CAACTCAAGTACTCCCTCCGA 58.832 52.381 0.00 0.00 0.00 4.55
3051 3911 2.761208 CAACTCAAGTACTCCCTCCGAT 59.239 50.000 0.00 0.00 0.00 4.18
3053 3913 2.025226 ACTCAAGTACTCCCTCCGATCA 60.025 50.000 0.00 0.00 0.00 2.92
3054 3914 2.359531 CTCAAGTACTCCCTCCGATCAC 59.640 54.545 0.00 0.00 0.00 3.06
3055 3915 2.025226 TCAAGTACTCCCTCCGATCACT 60.025 50.000 0.00 0.00 0.00 3.41
3056 3916 2.761208 CAAGTACTCCCTCCGATCACTT 59.239 50.000 0.00 0.00 0.00 3.16
3057 3917 2.379972 AGTACTCCCTCCGATCACTTG 58.620 52.381 0.00 0.00 0.00 3.16
3058 3918 2.100989 GTACTCCCTCCGATCACTTGT 58.899 52.381 0.00 0.00 0.00 3.16
3059 3919 1.187087 ACTCCCTCCGATCACTTGTC 58.813 55.000 0.00 0.00 0.00 3.18
3060 3920 0.101399 CTCCCTCCGATCACTTGTCG 59.899 60.000 0.00 0.00 38.75 4.35
3061 3921 1.519455 CCCTCCGATCACTTGTCGC 60.519 63.158 0.00 0.00 37.75 5.19
3062 3922 1.513158 CCTCCGATCACTTGTCGCT 59.487 57.895 0.00 0.00 37.75 4.93
3063 3923 0.803768 CCTCCGATCACTTGTCGCTG 60.804 60.000 0.00 0.00 37.75 5.18
3064 3924 1.416813 CTCCGATCACTTGTCGCTGC 61.417 60.000 0.00 0.00 37.75 5.25
3065 3925 1.446792 CCGATCACTTGTCGCTGCT 60.447 57.895 0.00 0.00 37.75 4.24
3066 3926 1.016130 CCGATCACTTGTCGCTGCTT 61.016 55.000 0.00 0.00 37.75 3.91
3067 3927 0.792640 CGATCACTTGTCGCTGCTTT 59.207 50.000 0.00 0.00 31.85 3.51
3068 3928 1.992667 CGATCACTTGTCGCTGCTTTA 59.007 47.619 0.00 0.00 31.85 1.85
3069 3929 2.028523 CGATCACTTGTCGCTGCTTTAG 59.971 50.000 0.00 0.00 31.85 1.85
3070 3930 2.526304 TCACTTGTCGCTGCTTTAGT 57.474 45.000 0.00 0.00 0.00 2.24
3071 3931 3.653539 TCACTTGTCGCTGCTTTAGTA 57.346 42.857 0.00 0.00 0.00 1.82
3072 3932 4.188247 TCACTTGTCGCTGCTTTAGTAT 57.812 40.909 0.00 0.00 0.00 2.12
3073 3933 5.319140 TCACTTGTCGCTGCTTTAGTATA 57.681 39.130 0.00 0.00 0.00 1.47
3074 3934 5.100259 TCACTTGTCGCTGCTTTAGTATAC 58.900 41.667 0.00 0.00 0.00 1.47
3075 3935 4.862574 CACTTGTCGCTGCTTTAGTATACA 59.137 41.667 5.50 0.00 0.00 2.29
3076 3936 5.004821 CACTTGTCGCTGCTTTAGTATACAG 59.995 44.000 5.50 0.00 0.00 2.74
3077 3937 4.713824 TGTCGCTGCTTTAGTATACAGT 57.286 40.909 5.50 0.00 32.65 3.55
3078 3938 5.068234 TGTCGCTGCTTTAGTATACAGTT 57.932 39.130 5.50 0.00 32.65 3.16
3079 3939 4.862574 TGTCGCTGCTTTAGTATACAGTTG 59.137 41.667 5.50 0.00 32.65 3.16
3080 3940 4.863131 GTCGCTGCTTTAGTATACAGTTGT 59.137 41.667 5.50 0.00 32.65 3.32
3081 3941 6.032094 GTCGCTGCTTTAGTATACAGTTGTA 58.968 40.000 5.50 0.00 32.65 2.41
3082 3942 6.020837 GTCGCTGCTTTAGTATACAGTTGTAC 60.021 42.308 5.50 0.00 32.72 2.90
3083 3943 6.034591 CGCTGCTTTAGTATACAGTTGTACT 58.965 40.000 5.50 4.33 34.31 2.73
3084 3944 7.066163 TCGCTGCTTTAGTATACAGTTGTACTA 59.934 37.037 5.50 2.80 32.33 1.82
3085 3945 7.699391 CGCTGCTTTAGTATACAGTTGTACTAA 59.301 37.037 5.50 11.47 39.09 2.24
3086 3946 9.362539 GCTGCTTTAGTATACAGTTGTACTAAA 57.637 33.333 19.64 19.64 43.85 1.85
3091 3951 8.922058 TTAGTATACAGTTGTACTAAAGCAGC 57.078 34.615 5.50 0.00 38.35 5.25
3092 3952 6.034591 AGTATACAGTTGTACTAAAGCAGCG 58.965 40.000 5.50 0.00 32.72 5.18
3093 3953 3.380479 ACAGTTGTACTAAAGCAGCGA 57.620 42.857 0.00 0.00 0.00 4.93
3094 3954 3.057734 ACAGTTGTACTAAAGCAGCGAC 58.942 45.455 0.00 0.00 0.00 5.19
3095 3955 3.057019 CAGTTGTACTAAAGCAGCGACA 58.943 45.455 0.00 0.00 0.00 4.35
3096 3956 3.493129 CAGTTGTACTAAAGCAGCGACAA 59.507 43.478 0.00 0.00 33.29 3.18
3097 3957 3.741344 AGTTGTACTAAAGCAGCGACAAG 59.259 43.478 0.00 0.00 35.28 3.16
3098 3958 3.380479 TGTACTAAAGCAGCGACAAGT 57.620 42.857 0.00 0.00 0.00 3.16
3099 3959 3.057019 TGTACTAAAGCAGCGACAAGTG 58.943 45.455 0.00 0.00 0.00 3.16
3100 3960 2.526304 ACTAAAGCAGCGACAAGTGA 57.474 45.000 0.00 0.00 0.00 3.41
3101 3961 3.045601 ACTAAAGCAGCGACAAGTGAT 57.954 42.857 0.00 0.00 0.00 3.06
3102 3962 2.996621 ACTAAAGCAGCGACAAGTGATC 59.003 45.455 0.00 0.00 0.00 2.92
3103 3963 0.792640 AAAGCAGCGACAAGTGATCG 59.207 50.000 0.00 0.00 42.55 3.69
3104 3964 1.016130 AAGCAGCGACAAGTGATCGG 61.016 55.000 0.00 0.00 39.99 4.18
3105 3965 1.446099 GCAGCGACAAGTGATCGGA 60.446 57.895 0.00 0.00 39.99 4.55
3106 3966 1.416813 GCAGCGACAAGTGATCGGAG 61.417 60.000 0.00 0.00 39.99 4.63
3107 3967 0.803768 CAGCGACAAGTGATCGGAGG 60.804 60.000 0.00 0.00 39.99 4.30
3108 3968 1.519455 GCGACAAGTGATCGGAGGG 60.519 63.158 0.00 0.00 39.99 4.30
3109 3969 1.945354 GCGACAAGTGATCGGAGGGA 61.945 60.000 0.00 0.00 39.99 4.20
3110 3970 0.101399 CGACAAGTGATCGGAGGGAG 59.899 60.000 0.00 0.00 35.92 4.30
3111 3971 1.187087 GACAAGTGATCGGAGGGAGT 58.813 55.000 0.00 0.00 0.00 3.85
3112 3972 2.376109 GACAAGTGATCGGAGGGAGTA 58.624 52.381 0.00 0.00 0.00 2.59
3113 3973 2.959707 GACAAGTGATCGGAGGGAGTAT 59.040 50.000 0.00 0.00 0.00 2.12
3114 3974 2.959707 ACAAGTGATCGGAGGGAGTATC 59.040 50.000 0.00 0.00 0.00 2.24
3115 3975 2.959030 CAAGTGATCGGAGGGAGTATCA 59.041 50.000 0.00 0.00 36.25 2.15
3116 3976 3.314307 AGTGATCGGAGGGAGTATCAA 57.686 47.619 0.00 0.00 36.25 2.57
3117 3977 3.643237 AGTGATCGGAGGGAGTATCAAA 58.357 45.455 0.00 0.00 36.25 2.69
3118 3978 4.030913 AGTGATCGGAGGGAGTATCAAAA 58.969 43.478 0.00 0.00 36.25 2.44
3119 3979 4.656112 AGTGATCGGAGGGAGTATCAAAAT 59.344 41.667 0.00 0.00 36.25 1.82
3120 3980 5.131142 AGTGATCGGAGGGAGTATCAAAATT 59.869 40.000 0.00 0.00 36.25 1.82
3121 3981 5.823045 GTGATCGGAGGGAGTATCAAAATTT 59.177 40.000 0.00 0.00 36.25 1.82
3122 3982 5.822519 TGATCGGAGGGAGTATCAAAATTTG 59.177 40.000 0.00 0.00 36.25 2.32
3123 3983 5.174037 TCGGAGGGAGTATCAAAATTTGT 57.826 39.130 5.56 0.00 36.25 2.83
3124 3984 6.302535 TCGGAGGGAGTATCAAAATTTGTA 57.697 37.500 5.56 0.00 36.25 2.41
3125 3985 6.110707 TCGGAGGGAGTATCAAAATTTGTAC 58.889 40.000 5.56 7.72 36.25 2.90
3126 3986 5.296035 CGGAGGGAGTATCAAAATTTGTACC 59.704 44.000 5.56 0.00 36.25 3.34
3145 4005 0.877649 CTACCTGCATGCTACGGCTG 60.878 60.000 20.33 8.96 39.59 4.85
3185 4045 4.337555 CCATGTCCCTTGAGAAATGTCATC 59.662 45.833 0.00 0.00 0.00 2.92
3197 4057 4.954202 AGAAATGTCATCACCAGAATGCAT 59.046 37.500 0.00 0.00 31.97 3.96
3201 4069 3.827876 TGTCATCACCAGAATGCATTGTT 59.172 39.130 18.59 1.51 31.97 2.83
3204 4072 4.157105 TCATCACCAGAATGCATTGTTCAG 59.843 41.667 18.59 6.57 31.97 3.02
3208 4076 4.456911 CACCAGAATGCATTGTTCAGTACT 59.543 41.667 18.59 1.61 31.97 2.73
3209 4077 4.456911 ACCAGAATGCATTGTTCAGTACTG 59.543 41.667 18.59 17.17 31.97 2.74
3210 4078 4.142534 CCAGAATGCATTGTTCAGTACTGG 60.143 45.833 22.48 19.03 35.91 4.00
3211 4079 4.012374 AGAATGCATTGTTCAGTACTGGG 58.988 43.478 22.48 7.04 0.00 4.45
3227 4095 2.028130 CTGGGTGGCTTGTGTGTTTTA 58.972 47.619 0.00 0.00 0.00 1.52
3230 4098 2.223711 GGGTGGCTTGTGTGTTTTACAG 60.224 50.000 0.00 0.00 40.69 2.74
3233 4101 4.261031 GGTGGCTTGTGTGTTTTACAGTAG 60.261 45.833 0.00 0.00 40.69 2.57
3238 4106 6.037391 GGCTTGTGTGTTTTACAGTAGTGTAA 59.963 38.462 17.41 17.41 45.57 2.41
3336 4207 3.977579 CAGTGGACGATGATAACGATGAG 59.022 47.826 0.00 0.00 34.70 2.90
3340 4211 3.381045 GACGATGATAACGATGAGGCAA 58.619 45.455 0.00 0.00 34.70 4.52
3348 4219 0.671781 ACGATGAGGCAACAGCACTC 60.672 55.000 0.00 0.00 41.41 3.51
3351 4222 3.782244 GAGGCAACAGCACTCGCG 61.782 66.667 0.00 0.00 45.49 5.87
3406 4277 1.939974 TAAGGCAGCTGATAGCAACG 58.060 50.000 20.43 0.00 45.56 4.10
3687 4571 4.675510 CACACATTTTGTCTGCTGTTCTT 58.324 39.130 0.00 0.00 35.67 2.52
4026 4938 2.586914 GCCGCACCCACCGTATAC 60.587 66.667 0.00 0.00 0.00 1.47
4027 4939 3.085119 GCCGCACCCACCGTATACT 62.085 63.158 0.56 0.00 0.00 2.12
4028 4940 1.737355 GCCGCACCCACCGTATACTA 61.737 60.000 0.56 0.00 0.00 1.82
4038 4950 3.444657 CGTATACTACGTGCCGTCC 57.555 57.895 0.00 0.00 46.41 4.79
4039 4951 0.383491 CGTATACTACGTGCCGTCCG 60.383 60.000 0.00 0.57 46.41 4.79
4040 4952 0.937304 GTATACTACGTGCCGTCCGA 59.063 55.000 0.00 0.00 41.54 4.55
4043 4955 1.717791 TACTACGTGCCGTCCGATGG 61.718 60.000 0.00 1.81 41.54 3.51
4056 4968 4.047834 GATGGCCATCGCGATTGA 57.952 55.556 29.34 4.25 32.99 2.57
4060 4972 2.621000 GCCATCGCGATTGACGTC 59.379 61.111 23.03 9.11 44.60 4.34
4063 4975 1.266943 CATCGCGATTGACGTCACG 59.733 57.895 21.14 20.28 44.60 4.35
4069 4981 1.822581 CGATTGACGTCACGCAGATA 58.177 50.000 19.90 1.27 37.22 1.98
4072 4984 1.170442 TTGACGTCACGCAGATAGGA 58.830 50.000 19.90 0.00 0.00 2.94
4073 4985 0.733150 TGACGTCACGCAGATAGGAG 59.267 55.000 15.76 0.00 0.00 3.69
4080 4992 1.299468 CGCAGATAGGAGTGACGGC 60.299 63.158 0.00 0.00 0.00 5.68
4113 5029 4.155733 CGCTCCCCGGTGCATGTA 62.156 66.667 0.00 0.00 34.68 2.29
4121 5037 0.464373 CCGGTGCATGTAGCCTGAAT 60.464 55.000 7.43 0.00 44.83 2.57
4124 5040 2.579873 GGTGCATGTAGCCTGAATGAT 58.420 47.619 1.01 0.00 44.83 2.45
4141 5057 0.108138 GATGGTGTCCTCCGGTTCAG 60.108 60.000 0.00 0.00 0.00 3.02
4143 5059 2.663196 GTGTCCTCCGGTTCAGGG 59.337 66.667 7.78 1.54 0.00 4.45
4144 5060 2.606519 TGTCCTCCGGTTCAGGGG 60.607 66.667 7.78 0.00 0.00 4.79
4146 5062 2.284405 TCCTCCGGTTCAGGGGAC 60.284 66.667 7.78 0.00 32.01 4.46
4147 5063 3.771160 CCTCCGGTTCAGGGGACG 61.771 72.222 0.00 0.00 32.01 4.79
4152 5068 4.324991 GGTTCAGGGGACGGCGTT 62.325 66.667 16.19 0.00 0.00 4.84
4153 5069 2.741211 GTTCAGGGGACGGCGTTC 60.741 66.667 16.19 13.33 0.00 3.95
4155 5071 3.524648 TTCAGGGGACGGCGTTCAC 62.525 63.158 21.55 18.11 0.00 3.18
4156 5072 4.003788 CAGGGGACGGCGTTCACT 62.004 66.667 19.43 19.43 0.00 3.41
4157 5073 3.239253 AGGGGACGGCGTTCACTT 61.239 61.111 19.43 3.74 0.00 3.16
4159 5075 2.029964 GGGACGGCGTTCACTTCA 59.970 61.111 21.55 0.00 0.00 3.02
4160 5076 2.315386 GGGACGGCGTTCACTTCAC 61.315 63.158 21.55 0.00 0.00 3.18
4161 5077 2.315386 GGACGGCGTTCACTTCACC 61.315 63.158 16.19 3.83 0.00 4.02
4163 5079 1.557443 GACGGCGTTCACTTCACCTG 61.557 60.000 16.19 0.00 0.00 4.00
4164 5080 1.300620 CGGCGTTCACTTCACCTGA 60.301 57.895 0.00 0.00 0.00 3.86
4165 5081 1.284982 CGGCGTTCACTTCACCTGAG 61.285 60.000 0.00 0.00 0.00 3.35
4166 5082 0.249911 GGCGTTCACTTCACCTGAGT 60.250 55.000 0.00 0.00 0.00 3.41
4168 5084 1.409412 CGTTCACTTCACCTGAGTCG 58.591 55.000 0.00 0.00 0.00 4.18
4169 5085 1.269102 CGTTCACTTCACCTGAGTCGT 60.269 52.381 0.00 0.00 0.00 4.34
4170 5086 2.798499 CGTTCACTTCACCTGAGTCGTT 60.798 50.000 0.00 0.00 0.00 3.85
4172 5088 2.028876 TCACTTCACCTGAGTCGTTGA 58.971 47.619 0.00 0.00 0.00 3.18
4173 5089 2.628178 TCACTTCACCTGAGTCGTTGAT 59.372 45.455 0.00 0.00 0.00 2.57
4174 5090 3.069586 TCACTTCACCTGAGTCGTTGATT 59.930 43.478 0.00 0.00 0.00 2.57
4175 5091 3.185188 CACTTCACCTGAGTCGTTGATTG 59.815 47.826 0.00 0.00 0.00 2.67
4176 5092 2.455674 TCACCTGAGTCGTTGATTGG 57.544 50.000 0.00 0.00 0.00 3.16
4177 5093 1.967779 TCACCTGAGTCGTTGATTGGA 59.032 47.619 0.00 0.00 0.00 3.53
4178 5094 2.069273 CACCTGAGTCGTTGATTGGAC 58.931 52.381 0.00 0.00 0.00 4.02
4179 5095 1.971357 ACCTGAGTCGTTGATTGGACT 59.029 47.619 0.00 0.00 45.71 3.85
4180 5096 2.368875 ACCTGAGTCGTTGATTGGACTT 59.631 45.455 0.00 0.00 43.23 3.01
4181 5097 2.738846 CCTGAGTCGTTGATTGGACTTG 59.261 50.000 0.00 0.00 43.23 3.16
4182 5098 3.393800 CTGAGTCGTTGATTGGACTTGT 58.606 45.455 0.00 0.00 43.23 3.16
4183 5099 3.804036 TGAGTCGTTGATTGGACTTGTT 58.196 40.909 0.00 0.00 43.23 2.83
4184 5100 4.196193 TGAGTCGTTGATTGGACTTGTTT 58.804 39.130 0.00 0.00 43.23 2.83
4185 5101 4.035091 TGAGTCGTTGATTGGACTTGTTTG 59.965 41.667 0.00 0.00 43.23 2.93
4186 5102 3.945285 AGTCGTTGATTGGACTTGTTTGT 59.055 39.130 0.00 0.00 40.47 2.83
4187 5103 5.120399 AGTCGTTGATTGGACTTGTTTGTA 58.880 37.500 0.00 0.00 40.47 2.41
4188 5104 5.236478 AGTCGTTGATTGGACTTGTTTGTAG 59.764 40.000 0.00 0.00 40.47 2.74
4189 5105 4.513692 TCGTTGATTGGACTTGTTTGTAGG 59.486 41.667 0.00 0.00 0.00 3.18
4190 5106 4.274950 CGTTGATTGGACTTGTTTGTAGGT 59.725 41.667 0.00 0.00 0.00 3.08
4191 5107 5.220970 CGTTGATTGGACTTGTTTGTAGGTT 60.221 40.000 0.00 0.00 0.00 3.50
4192 5108 5.766150 TGATTGGACTTGTTTGTAGGTTG 57.234 39.130 0.00 0.00 0.00 3.77
4193 5109 5.197451 TGATTGGACTTGTTTGTAGGTTGT 58.803 37.500 0.00 0.00 0.00 3.32
4194 5110 4.974368 TTGGACTTGTTTGTAGGTTGTG 57.026 40.909 0.00 0.00 0.00 3.33
4195 5111 2.685897 TGGACTTGTTTGTAGGTTGTGC 59.314 45.455 0.00 0.00 0.00 4.57
4199 5115 1.740297 TGTTTGTAGGTTGTGCGTGT 58.260 45.000 0.00 0.00 0.00 4.49
4200 5116 1.666700 TGTTTGTAGGTTGTGCGTGTC 59.333 47.619 0.00 0.00 0.00 3.67
4216 5132 2.610433 GTGTCTGACGAAGATGATGCA 58.390 47.619 2.98 0.00 37.23 3.96
4220 5136 2.667969 TCTGACGAAGATGATGCAAACG 59.332 45.455 0.00 0.00 0.00 3.60
4268 5184 1.722163 CGCATTCGTGTGTGTGTGC 60.722 57.895 0.00 0.00 0.00 4.57
4270 5186 1.722163 CATTCGTGTGTGTGTGCGC 60.722 57.895 0.00 0.00 0.00 6.09
4368 5298 1.940758 GTGCAACGCTTGTGTGCAG 60.941 57.895 0.00 0.00 36.10 4.41
4483 5423 1.908340 CTCAGGGAAGCTGACCAGGG 61.908 65.000 9.39 0.00 0.00 4.45
4499 5439 2.015726 GGGGGAGGAGAGGAGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
4500 5440 1.541672 GGGGAGGAGAGGAGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
4501 5441 1.541672 GGGAGGAGAGGAGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
4502 5442 0.996762 GGGAGGAGAGGAGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
4574 5516 4.645136 TGAGACTGAAACCGTAGCAGATAT 59.355 41.667 7.37 0.00 33.94 1.63
4575 5517 5.127194 TGAGACTGAAACCGTAGCAGATATT 59.873 40.000 7.37 0.00 33.94 1.28
4576 5518 5.978814 AGACTGAAACCGTAGCAGATATTT 58.021 37.500 7.37 0.00 33.94 1.40
4577 5519 6.043411 AGACTGAAACCGTAGCAGATATTTC 58.957 40.000 7.37 0.00 33.94 2.17
4578 5520 5.730550 ACTGAAACCGTAGCAGATATTTCA 58.269 37.500 7.37 0.00 35.42 2.69
4579 5521 6.349300 ACTGAAACCGTAGCAGATATTTCAT 58.651 36.000 7.37 0.00 35.97 2.57
4607 5576 4.314121 TCCAATGCTTTTACAAATGGCAC 58.686 39.130 0.00 0.00 35.72 5.01
4630 5599 1.151668 CTGCATAGGCGGTGCTATTC 58.848 55.000 16.03 0.00 45.35 1.75
4650 5619 1.306642 TTCACTCTCTCGCCCTCGAC 61.307 60.000 0.00 0.00 40.21 4.20
4691 5660 2.127251 GTAAAAGCACTTTGGCACAGC 58.873 47.619 0.00 0.00 42.39 4.40
4693 5662 0.103572 AAAGCACTTTGGCACAGCTG 59.896 50.000 13.48 13.48 42.39 4.24
4709 5681 4.215827 CACAGCTGAAAAAGAAGCATCTCT 59.784 41.667 23.35 0.00 42.06 3.10
4722 5694 0.537188 CATCTCTACCTTGGCACGGT 59.463 55.000 20.24 20.24 38.55 4.83
4750 6228 5.521735 CACAGTTAATATCAGTCTCACTGCC 59.478 44.000 0.00 0.00 45.54 4.85
4851 6401 9.459640 ACTATTGTACGTAGCAGTATTTGTATG 57.540 33.333 0.00 0.00 0.00 2.39
4852 6402 6.578020 TTGTACGTAGCAGTATTTGTATGC 57.422 37.500 0.00 0.00 40.29 3.14
4853 6403 5.652518 TGTACGTAGCAGTATTTGTATGCA 58.347 37.500 0.00 0.00 42.45 3.96
4854 6404 5.517411 TGTACGTAGCAGTATTTGTATGCAC 59.483 40.000 0.00 0.00 42.45 4.57
4855 6405 3.550275 ACGTAGCAGTATTTGTATGCACG 59.450 43.478 14.86 14.86 43.46 5.34
4856 6406 3.601586 CGTAGCAGTATTTGTATGCACGC 60.602 47.826 0.00 0.00 42.45 5.34
4857 6407 2.355197 AGCAGTATTTGTATGCACGCA 58.645 42.857 0.00 0.00 42.45 5.24
4858 6408 2.095853 AGCAGTATTTGTATGCACGCAC 59.904 45.455 0.00 0.00 42.45 5.34
4859 6409 2.692939 CAGTATTTGTATGCACGCACG 58.307 47.619 0.00 0.00 0.00 5.34
4860 6410 1.062002 AGTATTTGTATGCACGCACGC 59.938 47.619 0.00 0.00 0.00 5.34
4862 6412 0.454285 ATTTGTATGCACGCACGCAC 60.454 50.000 0.00 0.00 46.56 5.34
4863 6413 2.756374 TTTGTATGCACGCACGCACG 62.756 55.000 0.00 0.00 46.56 5.34
4954 6505 2.413963 CCATTCGGCGGGAAATGCA 61.414 57.895 7.21 0.00 38.36 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
421 461 9.460019 TTGGGACTTCAAAAATTCTGAAAATTT 57.540 25.926 0.00 0.00 32.57 1.82
511 590 0.941463 CGCTGCGAGAAGACACAGTT 60.941 55.000 18.66 0.00 32.65 3.16
525 604 0.528466 TACTATGCTCTGCACGCTGC 60.528 55.000 5.01 3.44 43.04 5.25
622 707 6.609876 ACATAATACTCCAATGCCACCAATA 58.390 36.000 0.00 0.00 0.00 1.90
655 740 6.862469 AATTGTTCATGGAATCAAGGTCAT 57.138 33.333 0.00 0.00 0.00 3.06
656 741 6.669125 AAATTGTTCATGGAATCAAGGTCA 57.331 33.333 0.00 0.00 0.00 4.02
691 777 5.399301 CCATAAAGCGAGACACAAAACAAAG 59.601 40.000 0.00 0.00 0.00 2.77
799 885 7.982354 CACAAAAACATGTCTTACCCCTAAAAA 59.018 33.333 0.00 0.00 0.00 1.94
800 886 7.124448 ACACAAAAACATGTCTTACCCCTAAAA 59.876 33.333 0.00 0.00 0.00 1.52
801 887 6.608002 ACACAAAAACATGTCTTACCCCTAAA 59.392 34.615 0.00 0.00 0.00 1.85
802 888 6.039941 CACACAAAAACATGTCTTACCCCTAA 59.960 38.462 0.00 0.00 0.00 2.69
803 889 5.533154 CACACAAAAACATGTCTTACCCCTA 59.467 40.000 0.00 0.00 0.00 3.53
804 890 4.340950 CACACAAAAACATGTCTTACCCCT 59.659 41.667 0.00 0.00 0.00 4.79
805 891 4.098807 ACACACAAAAACATGTCTTACCCC 59.901 41.667 0.00 0.00 0.00 4.95
806 892 5.040635 CACACACAAAAACATGTCTTACCC 58.959 41.667 0.00 0.00 0.00 3.69
807 893 5.514914 CACACACACAAAAACATGTCTTACC 59.485 40.000 0.00 0.00 0.00 2.85
808 894 6.033407 CACACACACACAAAAACATGTCTTAC 59.967 38.462 0.00 0.00 0.00 2.34
809 895 6.089476 CACACACACACAAAAACATGTCTTA 58.911 36.000 0.00 0.00 0.00 2.10
810 896 4.922692 CACACACACACAAAAACATGTCTT 59.077 37.500 0.00 0.00 0.00 3.01
811 897 4.022416 ACACACACACACAAAAACATGTCT 60.022 37.500 0.00 0.00 0.00 3.41
812 898 4.089780 CACACACACACACAAAAACATGTC 59.910 41.667 0.00 0.00 0.00 3.06
813 899 3.986572 CACACACACACACAAAAACATGT 59.013 39.130 0.00 0.00 0.00 3.21
814 900 3.986572 ACACACACACACACAAAAACATG 59.013 39.130 0.00 0.00 0.00 3.21
815 901 3.986572 CACACACACACACACAAAAACAT 59.013 39.130 0.00 0.00 0.00 2.71
816 902 3.181486 ACACACACACACACACAAAAACA 60.181 39.130 0.00 0.00 0.00 2.83
817 903 3.181377 CACACACACACACACACAAAAAC 59.819 43.478 0.00 0.00 0.00 2.43
818 904 3.181486 ACACACACACACACACACAAAAA 60.181 39.130 0.00 0.00 0.00 1.94
819 905 2.359214 ACACACACACACACACACAAAA 59.641 40.909 0.00 0.00 0.00 2.44
820 906 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
821 907 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
822 908 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
823 909 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
824 910 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
825 911 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
826 912 1.884235 TTCACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
827 913 2.482336 TCTTTCACACACACACACACAC 59.518 45.455 0.00 0.00 0.00 3.82
828 914 2.482336 GTCTTTCACACACACACACACA 59.518 45.455 0.00 0.00 0.00 3.72
860 946 4.447616 CCACAGGCCTTTGATATATTCCCA 60.448 45.833 20.80 0.00 0.00 4.37
861 947 4.082125 CCACAGGCCTTTGATATATTCCC 58.918 47.826 20.80 0.00 0.00 3.97
862 948 4.082125 CCCACAGGCCTTTGATATATTCC 58.918 47.826 20.80 0.00 0.00 3.01
869 955 1.002069 TGATCCCACAGGCCTTTGAT 58.998 50.000 20.80 11.24 0.00 2.57
894 980 2.364002 ACAAATAAAGCACGTTTGGGCT 59.636 40.909 0.00 0.00 43.46 5.19
902 988 6.427150 ACAGTAAACAGACAAATAAAGCACG 58.573 36.000 0.00 0.00 0.00 5.34
903 989 9.382244 CTAACAGTAAACAGACAAATAAAGCAC 57.618 33.333 0.00 0.00 0.00 4.40
904 990 8.564574 CCTAACAGTAAACAGACAAATAAAGCA 58.435 33.333 0.00 0.00 0.00 3.91
909 995 9.048446 GTGAACCTAACAGTAAACAGACAAATA 57.952 33.333 0.00 0.00 0.00 1.40
910 996 7.554835 TGTGAACCTAACAGTAAACAGACAAAT 59.445 33.333 0.00 0.00 0.00 2.32
911 997 6.879993 TGTGAACCTAACAGTAAACAGACAAA 59.120 34.615 0.00 0.00 0.00 2.83
912 998 6.408035 TGTGAACCTAACAGTAAACAGACAA 58.592 36.000 0.00 0.00 0.00 3.18
913 999 5.979993 TGTGAACCTAACAGTAAACAGACA 58.020 37.500 0.00 0.00 0.00 3.41
914 1000 5.050295 GCTGTGAACCTAACAGTAAACAGAC 60.050 44.000 3.79 0.00 45.58 3.51
915 1001 5.054477 GCTGTGAACCTAACAGTAAACAGA 58.946 41.667 3.79 0.00 45.58 3.41
916 1002 4.213482 GGCTGTGAACCTAACAGTAAACAG 59.787 45.833 5.55 0.00 45.58 3.16
930 1016 1.933181 GCTTTTGTTTGGGCTGTGAAC 59.067 47.619 0.00 0.00 0.00 3.18
948 1034 2.480419 CGGTCGTTTTGATTCTTCTGCT 59.520 45.455 0.00 0.00 0.00 4.24
995 1104 1.824760 TCGTCGGACGCCATGGATA 60.825 57.895 24.76 2.90 42.21 2.59
1260 1376 1.734655 AGCAGTTGGAAAGGAGAGGA 58.265 50.000 0.00 0.00 0.00 3.71
1397 2203 2.356553 GCACACGGCGTCCAACTA 60.357 61.111 10.85 0.00 0.00 2.24
1432 2238 7.149307 TGTTTGATAACGTCATGACACTCTAA 58.851 34.615 24.93 14.15 36.54 2.10
1433 2239 6.683715 TGTTTGATAACGTCATGACACTCTA 58.316 36.000 24.93 10.45 36.54 2.43
1445 2252 5.473796 AACACGAAGTTGTTTGATAACGT 57.526 34.783 0.00 0.00 41.61 3.99
1490 2297 5.788533 TCAACCTAGAAATCCCCTCAAGTTA 59.211 40.000 0.00 0.00 0.00 2.24
1494 2301 4.435137 TCTCAACCTAGAAATCCCCTCAA 58.565 43.478 0.00 0.00 0.00 3.02
1512 2319 3.775316 GGAGACAGGAAACCCTAATCTCA 59.225 47.826 18.70 0.00 42.00 3.27
1514 2321 3.116174 GGGAGACAGGAAACCCTAATCT 58.884 50.000 0.00 0.00 39.28 2.40
1531 2338 5.767168 CCTTGCATTTTCTAGGATAAGGGAG 59.233 44.000 0.00 0.00 31.87 4.30
1538 2345 6.573094 GCACTTTTCCTTGCATTTTCTAGGAT 60.573 38.462 3.44 0.00 37.71 3.24
1542 2349 5.528043 TGCACTTTTCCTTGCATTTTCTA 57.472 34.783 0.00 0.00 43.79 2.10
1551 2358 3.922240 CGATCCAAATGCACTTTTCCTTG 59.078 43.478 0.00 0.00 0.00 3.61
1552 2359 3.056607 CCGATCCAAATGCACTTTTCCTT 60.057 43.478 0.00 0.00 0.00 3.36
1554 2361 2.491693 TCCGATCCAAATGCACTTTTCC 59.508 45.455 0.00 0.00 0.00 3.13
1555 2362 3.848272 TCCGATCCAAATGCACTTTTC 57.152 42.857 0.00 0.00 0.00 2.29
1579 2386 4.441634 GCCGGTACAGTCACTAATCTCAAT 60.442 45.833 1.90 0.00 0.00 2.57
1582 2389 2.688958 AGCCGGTACAGTCACTAATCTC 59.311 50.000 1.90 0.00 0.00 2.75
1669 2481 1.967066 CAACCACCCAAGTTTGCCATA 59.033 47.619 0.00 0.00 0.00 2.74
1709 2535 2.303311 GTGGCTGATCCCTAGGGTTATC 59.697 54.545 27.58 22.55 36.47 1.75
1727 2553 0.321034 TGTTCTAGCTGCTGCAGTGG 60.321 55.000 28.50 18.58 42.74 4.00
1728 2554 1.077123 CTGTTCTAGCTGCTGCAGTG 58.923 55.000 28.50 18.98 42.74 3.66
1795 2630 9.713740 GACTGAAACAATAAAGCATCTTCTATG 57.286 33.333 0.00 0.00 0.00 2.23
1813 2648 2.284417 AGAACTTCGTTGCGACTGAAAC 59.716 45.455 1.84 3.35 34.89 2.78
1814 2649 2.284150 CAGAACTTCGTTGCGACTGAAA 59.716 45.455 1.84 0.00 34.89 2.69
1841 2676 7.159372 TCTACAACTCATCTAAAACCAGGTTC 58.841 38.462 4.93 0.00 0.00 3.62
1872 2707 4.489679 AGCTTCAAAGACATTCGGTTTC 57.510 40.909 0.00 0.00 0.00 2.78
1877 2712 5.692814 TGAATCAAGCTTCAAAGACATTCG 58.307 37.500 0.00 0.00 32.35 3.34
1910 2745 1.294780 CAAGTTCCTGAGGCGAGCT 59.705 57.895 0.00 0.00 0.00 4.09
1920 2755 4.042187 ACTTCAAGATGGTAGCAAGTTCCT 59.958 41.667 0.00 0.00 0.00 3.36
1921 2756 4.327680 ACTTCAAGATGGTAGCAAGTTCC 58.672 43.478 0.00 0.00 0.00 3.62
2001 2838 8.482429 GCAGAAAAATCAAGTGAACAACATAAG 58.518 33.333 0.00 0.00 0.00 1.73
2028 2865 4.623932 AGACAGGTCTAGCAAACAATGA 57.376 40.909 0.00 0.00 38.35 2.57
2085 2923 8.442632 TCTCATCAGATTCCACAAATACATTC 57.557 34.615 0.00 0.00 0.00 2.67
2113 2951 0.250858 TGGCAAGGTCACTGGTCATG 60.251 55.000 0.00 0.00 23.75 3.07
2114 2952 0.478072 TTGGCAAGGTCACTGGTCAT 59.522 50.000 0.00 0.00 30.93 3.06
2157 3011 6.933514 ATGGATTATGGTTTCACCTTTTGT 57.066 33.333 0.00 0.00 39.58 2.83
2220 3075 1.212688 TGCTACCACTGCTGGCATAAT 59.787 47.619 0.00 0.00 42.08 1.28
2235 3091 3.594134 AGAGCAAGACATTCAGTGCTAC 58.406 45.455 0.00 0.00 46.99 3.58
2286 3143 9.379791 ACAAAGGGAGATAATAAAAAGTAGTCG 57.620 33.333 0.00 0.00 0.00 4.18
2307 3164 6.814506 ATGAATCAGAACCTTCAGACAAAG 57.185 37.500 0.00 0.00 35.04 2.77
2331 3188 4.202050 GGAAAACATGTGAAGAACAGCTGT 60.202 41.667 15.25 15.25 43.64 4.40
2418 3275 3.236816 CTGCGTGGCAATAAAAGAACTG 58.763 45.455 0.00 0.00 38.41 3.16
2436 3296 8.976986 AAACATTGATCTTAGAAAATGACTGC 57.023 30.769 20.55 0.00 34.75 4.40
2444 3304 8.779303 TGCGAGTAAAAACATTGATCTTAGAAA 58.221 29.630 0.00 0.00 0.00 2.52
2453 3313 4.819630 AGGAACTGCGAGTAAAAACATTGA 59.180 37.500 0.00 0.00 37.18 2.57
2644 3504 4.379918 GCCTCTAACAGACCAAAGAATTGC 60.380 45.833 0.00 0.00 35.10 3.56
2647 3507 4.583871 CAGCCTCTAACAGACCAAAGAAT 58.416 43.478 0.00 0.00 0.00 2.40
2655 3515 2.675348 GACATTGCAGCCTCTAACAGAC 59.325 50.000 0.00 0.00 0.00 3.51
2657 3517 2.983229 AGACATTGCAGCCTCTAACAG 58.017 47.619 0.00 0.00 0.00 3.16
2659 3519 3.126000 GTGAAGACATTGCAGCCTCTAAC 59.874 47.826 0.00 0.00 0.00 2.34
2683 3543 2.573462 AGAAGGCTCATTACAAGCTCCA 59.427 45.455 0.00 0.00 39.75 3.86
2689 3549 2.076100 CGCACAGAAGGCTCATTACAA 58.924 47.619 0.00 0.00 0.00 2.41
2707 3567 3.941836 GCCTGGTAATCTGCGCGC 61.942 66.667 27.26 27.26 0.00 6.86
2710 3570 1.382522 ACAATGCCTGGTAATCTGCG 58.617 50.000 0.00 0.00 0.00 5.18
2726 3586 2.557924 CACCCTCAGCAGCATTAAACAA 59.442 45.455 0.00 0.00 0.00 2.83
2777 3637 8.798975 TGGATCTGAGGGAGTAGTATTTATTT 57.201 34.615 0.00 0.00 0.00 1.40
2780 3640 9.480861 CATATGGATCTGAGGGAGTAGTATTTA 57.519 37.037 0.00 0.00 0.00 1.40
2784 3644 5.555941 TCCATATGGATCTGAGGGAGTAGTA 59.444 44.000 20.98 0.00 39.78 1.82
2785 3645 4.358310 TCCATATGGATCTGAGGGAGTAGT 59.642 45.833 20.98 0.00 39.78 2.73
2786 3646 4.940483 TCCATATGGATCTGAGGGAGTAG 58.060 47.826 20.98 0.00 39.78 2.57
2787 3647 4.940483 CTCCATATGGATCTGAGGGAGTA 58.060 47.826 24.73 0.00 44.46 2.59
2788 3648 3.143741 ACTCCATATGGATCTGAGGGAGT 59.856 47.826 24.73 17.15 46.45 3.85
2789 3649 3.788933 ACTCCATATGGATCTGAGGGAG 58.211 50.000 24.73 11.99 44.46 4.30
2790 3650 3.931241 ACTCCATATGGATCTGAGGGA 57.069 47.619 24.73 0.00 44.46 4.20
2791 3651 4.682563 ACTACTCCATATGGATCTGAGGG 58.317 47.826 24.73 13.40 44.46 4.30
2792 3652 5.777223 TCAACTACTCCATATGGATCTGAGG 59.223 44.000 24.73 14.10 44.46 3.86
2793 3653 6.266330 TGTCAACTACTCCATATGGATCTGAG 59.734 42.308 24.73 19.16 44.46 3.35
2794 3654 6.136155 TGTCAACTACTCCATATGGATCTGA 58.864 40.000 24.73 17.75 44.46 3.27
2795 3655 6.410942 TGTCAACTACTCCATATGGATCTG 57.589 41.667 24.73 15.52 44.46 2.90
2796 3656 7.437713 TTTGTCAACTACTCCATATGGATCT 57.562 36.000 24.73 14.89 44.46 2.75
2797 3657 8.682936 ATTTTGTCAACTACTCCATATGGATC 57.317 34.615 24.73 8.58 44.46 3.36
2798 3658 8.274322 TGATTTTGTCAACTACTCCATATGGAT 58.726 33.333 24.73 16.35 37.47 3.41
2799 3659 7.629157 TGATTTTGTCAACTACTCCATATGGA 58.371 34.615 23.17 23.17 36.38 3.41
2800 3660 7.864108 TGATTTTGTCAACTACTCCATATGG 57.136 36.000 16.25 16.25 32.78 2.74
2806 3666 9.788960 GGAAATTATGATTTTGTCAACTACTCC 57.211 33.333 0.00 0.00 40.97 3.85
2827 3687 3.837355 ACTGCACAGAAAGGAAGGAAAT 58.163 40.909 4.31 0.00 0.00 2.17
2831 3691 2.551459 CAGAACTGCACAGAAAGGAAGG 59.449 50.000 4.31 0.00 0.00 3.46
2840 3700 1.160137 GGCTTACCAGAACTGCACAG 58.840 55.000 0.00 0.00 35.26 3.66
2853 3713 7.265673 TGTAAGTACATGAGAGAATGGCTTAC 58.734 38.462 0.00 17.40 42.55 2.34
2857 3717 6.109359 AGTTGTAAGTACATGAGAGAATGGC 58.891 40.000 0.00 0.00 35.89 4.40
2863 3723 7.155328 ACCAGAAAGTTGTAAGTACATGAGAG 58.845 38.462 0.00 0.00 35.89 3.20
2976 3836 4.807304 AGTACACTTACCACAAAACTGTCG 59.193 41.667 0.00 0.00 0.00 4.35
3009 3869 4.973396 TGAGAAAATAAGCAACATCAGCG 58.027 39.130 0.00 0.00 37.01 5.18
3020 3880 8.097662 AGGGAGTACTTGAGTTGAGAAAATAAG 58.902 37.037 0.00 0.00 0.00 1.73
3027 3887 3.432378 GGAGGGAGTACTTGAGTTGAGA 58.568 50.000 0.00 0.00 0.00 3.27
3034 3894 2.025226 AGTGATCGGAGGGAGTACTTGA 60.025 50.000 0.00 0.00 0.00 3.02
3041 3901 0.101399 CGACAAGTGATCGGAGGGAG 59.899 60.000 0.00 0.00 35.92 4.30
3042 3902 1.945354 GCGACAAGTGATCGGAGGGA 61.945 60.000 0.00 0.00 39.99 4.20
3043 3903 1.519455 GCGACAAGTGATCGGAGGG 60.519 63.158 0.00 0.00 39.99 4.30
3044 3904 0.803768 CAGCGACAAGTGATCGGAGG 60.804 60.000 0.00 0.00 39.99 4.30
3045 3905 1.416813 GCAGCGACAAGTGATCGGAG 61.417 60.000 0.00 0.00 39.99 4.63
3046 3906 1.446099 GCAGCGACAAGTGATCGGA 60.446 57.895 0.00 0.00 39.99 4.55
3047 3907 1.016130 AAGCAGCGACAAGTGATCGG 61.016 55.000 0.00 0.00 39.99 4.18
3048 3908 0.792640 AAAGCAGCGACAAGTGATCG 59.207 50.000 0.00 0.00 42.55 3.69
3050 3910 3.045601 ACTAAAGCAGCGACAAGTGAT 57.954 42.857 0.00 0.00 0.00 3.06
3051 3911 2.526304 ACTAAAGCAGCGACAAGTGA 57.474 45.000 0.00 0.00 0.00 3.41
3053 3913 5.068234 TGTATACTAAAGCAGCGACAAGT 57.932 39.130 4.17 0.00 0.00 3.16
3054 3914 5.103000 ACTGTATACTAAAGCAGCGACAAG 58.897 41.667 4.17 0.00 32.65 3.16
3055 3915 5.068234 ACTGTATACTAAAGCAGCGACAA 57.932 39.130 4.17 0.00 32.65 3.18
3056 3916 4.713824 ACTGTATACTAAAGCAGCGACA 57.286 40.909 4.17 0.00 32.65 4.35
3057 3917 4.863131 ACAACTGTATACTAAAGCAGCGAC 59.137 41.667 4.17 0.00 32.65 5.19
3058 3918 5.068234 ACAACTGTATACTAAAGCAGCGA 57.932 39.130 4.17 0.00 32.65 4.93
3059 3919 6.034591 AGTACAACTGTATACTAAAGCAGCG 58.965 40.000 4.17 0.00 32.54 5.18
3060 3920 8.922058 TTAGTACAACTGTATACTAAAGCAGC 57.078 34.615 16.36 0.00 39.68 5.25
3065 3925 9.362539 GCTGCTTTAGTACAACTGTATACTAAA 57.637 33.333 22.81 22.81 45.21 1.85
3066 3926 7.699391 CGCTGCTTTAGTACAACTGTATACTAA 59.301 37.037 15.39 15.39 40.47 2.24
3067 3927 7.066163 TCGCTGCTTTAGTACAACTGTATACTA 59.934 37.037 4.17 7.45 33.65 1.82
3068 3928 6.034591 CGCTGCTTTAGTACAACTGTATACT 58.965 40.000 4.17 9.00 35.76 2.12
3069 3929 6.020837 GTCGCTGCTTTAGTACAACTGTATAC 60.021 42.308 0.00 0.00 32.54 1.47
3070 3930 6.032094 GTCGCTGCTTTAGTACAACTGTATA 58.968 40.000 0.00 0.00 32.54 1.47
3071 3931 4.863131 GTCGCTGCTTTAGTACAACTGTAT 59.137 41.667 0.00 0.00 32.54 2.29
3072 3932 4.232221 GTCGCTGCTTTAGTACAACTGTA 58.768 43.478 0.00 0.00 0.00 2.74
3073 3933 3.057734 GTCGCTGCTTTAGTACAACTGT 58.942 45.455 0.00 0.00 0.00 3.55
3074 3934 3.057019 TGTCGCTGCTTTAGTACAACTG 58.943 45.455 0.00 0.00 0.00 3.16
3075 3935 3.380479 TGTCGCTGCTTTAGTACAACT 57.620 42.857 0.00 0.00 0.00 3.16
3076 3936 3.493503 ACTTGTCGCTGCTTTAGTACAAC 59.506 43.478 0.00 0.00 33.64 3.32
3077 3937 3.493129 CACTTGTCGCTGCTTTAGTACAA 59.507 43.478 0.00 0.00 34.99 2.41
3078 3938 3.057019 CACTTGTCGCTGCTTTAGTACA 58.943 45.455 0.00 0.00 0.00 2.90
3079 3939 3.314553 TCACTTGTCGCTGCTTTAGTAC 58.685 45.455 0.00 0.00 0.00 2.73
3080 3940 3.653539 TCACTTGTCGCTGCTTTAGTA 57.346 42.857 0.00 0.00 0.00 1.82
3081 3941 2.526304 TCACTTGTCGCTGCTTTAGT 57.474 45.000 0.00 0.00 0.00 2.24
3082 3942 2.028523 CGATCACTTGTCGCTGCTTTAG 59.971 50.000 0.00 0.00 31.85 1.85
3083 3943 1.992667 CGATCACTTGTCGCTGCTTTA 59.007 47.619 0.00 0.00 31.85 1.85
3084 3944 0.792640 CGATCACTTGTCGCTGCTTT 59.207 50.000 0.00 0.00 31.85 3.51
3085 3945 1.016130 CCGATCACTTGTCGCTGCTT 61.016 55.000 0.00 0.00 37.75 3.91
3086 3946 1.446792 CCGATCACTTGTCGCTGCT 60.447 57.895 0.00 0.00 37.75 4.24
3087 3947 1.416813 CTCCGATCACTTGTCGCTGC 61.417 60.000 0.00 0.00 37.75 5.25
3088 3948 0.803768 CCTCCGATCACTTGTCGCTG 60.804 60.000 0.00 0.00 37.75 5.18
3089 3949 1.513158 CCTCCGATCACTTGTCGCT 59.487 57.895 0.00 0.00 37.75 4.93
3090 3950 1.519455 CCCTCCGATCACTTGTCGC 60.519 63.158 0.00 0.00 37.75 5.19
3091 3951 0.101399 CTCCCTCCGATCACTTGTCG 59.899 60.000 0.00 0.00 38.75 4.35
3092 3952 1.187087 ACTCCCTCCGATCACTTGTC 58.813 55.000 0.00 0.00 0.00 3.18
3093 3953 2.526888 TACTCCCTCCGATCACTTGT 57.473 50.000 0.00 0.00 0.00 3.16
3094 3954 2.959030 TGATACTCCCTCCGATCACTTG 59.041 50.000 0.00 0.00 0.00 3.16
3095 3955 3.314307 TGATACTCCCTCCGATCACTT 57.686 47.619 0.00 0.00 0.00 3.16
3096 3956 3.314307 TTGATACTCCCTCCGATCACT 57.686 47.619 0.00 0.00 0.00 3.41
3097 3957 4.402056 TTTTGATACTCCCTCCGATCAC 57.598 45.455 0.00 0.00 0.00 3.06
3098 3958 5.630415 AATTTTGATACTCCCTCCGATCA 57.370 39.130 0.00 0.00 0.00 2.92
3099 3959 5.823045 ACAAATTTTGATACTCCCTCCGATC 59.177 40.000 15.81 0.00 0.00 3.69
3100 3960 5.755849 ACAAATTTTGATACTCCCTCCGAT 58.244 37.500 15.81 0.00 0.00 4.18
3101 3961 5.174037 ACAAATTTTGATACTCCCTCCGA 57.826 39.130 15.81 0.00 0.00 4.55
3102 3962 5.296035 GGTACAAATTTTGATACTCCCTCCG 59.704 44.000 15.81 0.00 0.00 4.63
3103 3963 6.424032 AGGTACAAATTTTGATACTCCCTCC 58.576 40.000 15.81 4.80 0.00 4.30
3104 3964 7.498239 GGTAGGTACAAATTTTGATACTCCCTC 59.502 40.741 15.81 2.94 0.00 4.30
3105 3965 7.184022 AGGTAGGTACAAATTTTGATACTCCCT 59.816 37.037 15.81 11.45 0.00 4.20
3106 3966 7.282450 CAGGTAGGTACAAATTTTGATACTCCC 59.718 40.741 15.81 9.70 0.00 4.30
3107 3967 7.201705 GCAGGTAGGTACAAATTTTGATACTCC 60.202 40.741 15.81 14.53 0.00 3.85
3108 3968 7.335924 TGCAGGTAGGTACAAATTTTGATACTC 59.664 37.037 15.81 8.36 0.00 2.59
3109 3969 7.172342 TGCAGGTAGGTACAAATTTTGATACT 58.828 34.615 15.81 11.37 0.00 2.12
3110 3970 7.385778 TGCAGGTAGGTACAAATTTTGATAC 57.614 36.000 15.81 12.69 0.00 2.24
3111 3971 7.416213 GCATGCAGGTAGGTACAAATTTTGATA 60.416 37.037 14.21 2.42 0.00 2.15
3112 3972 6.627953 GCATGCAGGTAGGTACAAATTTTGAT 60.628 38.462 14.21 3.30 0.00 2.57
3113 3973 5.336372 GCATGCAGGTAGGTACAAATTTTGA 60.336 40.000 14.21 0.00 0.00 2.69
3114 3974 4.864247 GCATGCAGGTAGGTACAAATTTTG 59.136 41.667 14.21 7.59 0.00 2.44
3115 3975 4.772100 AGCATGCAGGTAGGTACAAATTTT 59.228 37.500 21.98 0.00 0.00 1.82
3116 3976 4.344104 AGCATGCAGGTAGGTACAAATTT 58.656 39.130 21.98 0.00 0.00 1.82
3117 3977 3.968265 AGCATGCAGGTAGGTACAAATT 58.032 40.909 21.98 0.00 0.00 1.82
3118 3978 3.652057 AGCATGCAGGTAGGTACAAAT 57.348 42.857 21.98 0.00 0.00 2.32
3119 3979 3.677700 CGTAGCATGCAGGTAGGTACAAA 60.678 47.826 21.98 0.00 36.36 2.83
3120 3980 2.159156 CGTAGCATGCAGGTAGGTACAA 60.159 50.000 21.98 0.00 36.36 2.41
3121 3981 1.407618 CGTAGCATGCAGGTAGGTACA 59.592 52.381 21.98 0.00 36.36 2.90
3122 3982 1.269621 CCGTAGCATGCAGGTAGGTAC 60.270 57.143 21.98 10.49 35.03 3.34
3123 3983 1.037493 CCGTAGCATGCAGGTAGGTA 58.963 55.000 21.98 0.00 35.03 3.08
3124 3984 1.823295 CCGTAGCATGCAGGTAGGT 59.177 57.895 21.98 0.00 35.03 3.08
3125 3985 1.595382 GCCGTAGCATGCAGGTAGG 60.595 63.158 21.98 15.77 39.53 3.18
3126 3986 0.877649 CAGCCGTAGCATGCAGGTAG 60.878 60.000 21.98 12.19 43.56 3.18
3145 4005 1.153469 GGAGGCAGACAGCTACAGC 60.153 63.158 0.00 0.00 44.79 4.40
3158 4018 0.620556 TTCTCAAGGGACATGGAGGC 59.379 55.000 0.00 0.00 0.00 4.70
3185 4045 3.928727 ACTGAACAATGCATTCTGGTG 57.071 42.857 9.53 0.75 31.34 4.17
3197 4057 1.136828 AGCCACCCAGTACTGAACAA 58.863 50.000 24.68 0.00 0.00 2.83
3201 4069 0.396435 CACAAGCCACCCAGTACTGA 59.604 55.000 24.68 0.00 0.00 3.41
3204 4072 0.179029 ACACACAAGCCACCCAGTAC 60.179 55.000 0.00 0.00 0.00 2.73
3208 4076 1.751924 GTAAAACACACAAGCCACCCA 59.248 47.619 0.00 0.00 0.00 4.51
3209 4077 1.751924 TGTAAAACACACAAGCCACCC 59.248 47.619 0.00 0.00 30.04 4.61
3210 4078 2.425668 ACTGTAAAACACACAAGCCACC 59.574 45.455 0.00 0.00 32.33 4.61
3211 4079 3.775661 ACTGTAAAACACACAAGCCAC 57.224 42.857 0.00 0.00 32.33 5.01
3230 4098 9.113876 GCAGAATAAAACACACAATTACACTAC 57.886 33.333 0.00 0.00 0.00 2.73
3233 4101 7.647715 ACTGCAGAATAAAACACACAATTACAC 59.352 33.333 23.35 0.00 0.00 2.90
3238 4106 7.042797 AGAACTGCAGAATAAAACACACAAT 57.957 32.000 23.35 0.00 0.00 2.71
3340 4211 4.609018 AAGTGCCGCGAGTGCTGT 62.609 61.111 8.23 0.00 39.65 4.40
3348 4219 2.127118 CTTTCAGCAAGTGCCGCG 60.127 61.111 0.00 0.00 43.38 6.46
3351 4222 0.319405 ATTGGCTTTCAGCAAGTGCC 59.681 50.000 0.00 0.00 44.75 5.01
3543 4426 0.318762 GCCGTGACCTCAGAAGTCTT 59.681 55.000 0.81 0.00 35.21 3.01
3573 4456 0.534412 CCATCTCGAGGCACTTCAGT 59.466 55.000 13.56 0.00 41.55 3.41
3699 4583 0.555769 AACCAAAGCCAACCCAGAGA 59.444 50.000 0.00 0.00 0.00 3.10
4039 4951 1.571460 GTCAATCGCGATGGCCATC 59.429 57.895 32.34 32.34 35.02 3.51
4040 4952 2.246739 CGTCAATCGCGATGGCCAT 61.247 57.895 24.47 20.96 35.02 4.40
4043 4955 2.164663 TGACGTCAATCGCGATGGC 61.165 57.895 24.47 16.69 44.19 4.40
4044 4956 1.631072 GTGACGTCAATCGCGATGG 59.369 57.895 24.47 20.98 44.19 3.51
4053 4965 1.132453 CTCCTATCTGCGTGACGTCAA 59.868 52.381 21.95 4.26 0.00 3.18
4054 4966 0.733150 CTCCTATCTGCGTGACGTCA 59.267 55.000 15.76 15.76 0.00 4.35
4056 4968 0.452184 CACTCCTATCTGCGTGACGT 59.548 55.000 6.91 0.00 0.00 4.34
4060 4972 0.248661 CCGTCACTCCTATCTGCGTG 60.249 60.000 0.00 0.00 0.00 5.34
4063 4975 0.175760 TTGCCGTCACTCCTATCTGC 59.824 55.000 0.00 0.00 0.00 4.26
4065 4977 1.135083 CGTTTGCCGTCACTCCTATCT 60.135 52.381 0.00 0.00 0.00 1.98
4069 4981 2.030562 CCGTTTGCCGTCACTCCT 59.969 61.111 0.00 0.00 33.66 3.69
4099 5011 3.792736 GGCTACATGCACCGGGGA 61.793 66.667 8.67 0.00 45.15 4.81
4103 5019 0.659427 CATTCAGGCTACATGCACCG 59.341 55.000 0.00 0.00 45.15 4.94
4107 5023 2.292569 CACCATCATTCAGGCTACATGC 59.707 50.000 0.00 0.00 41.94 4.06
4113 5029 1.211457 GAGGACACCATCATTCAGGCT 59.789 52.381 0.00 0.00 0.00 4.58
4141 5057 2.741211 GAAGTGAACGCCGTCCCC 60.741 66.667 0.00 0.00 0.00 4.81
4143 5059 2.315386 GGTGAAGTGAACGCCGTCC 61.315 63.158 0.00 0.00 0.00 4.79
4144 5060 1.300697 AGGTGAAGTGAACGCCGTC 60.301 57.895 0.00 0.00 42.03 4.79
4146 5062 1.284982 CTCAGGTGAAGTGAACGCCG 61.285 60.000 0.00 0.00 42.03 6.46
4147 5063 0.249911 ACTCAGGTGAAGTGAACGCC 60.250 55.000 0.00 0.00 38.09 5.68
4148 5064 1.140816 GACTCAGGTGAAGTGAACGC 58.859 55.000 0.00 0.00 0.00 4.84
4149 5065 1.269102 ACGACTCAGGTGAAGTGAACG 60.269 52.381 0.00 0.00 33.18 3.95
4152 5068 2.028876 TCAACGACTCAGGTGAAGTGA 58.971 47.619 0.00 0.00 34.49 3.41
4153 5069 2.509052 TCAACGACTCAGGTGAAGTG 57.491 50.000 0.00 0.00 34.49 3.16
4155 5071 2.738846 CCAATCAACGACTCAGGTGAAG 59.261 50.000 0.00 0.00 41.65 3.02
4156 5072 2.367241 TCCAATCAACGACTCAGGTGAA 59.633 45.455 0.00 0.00 41.65 3.18
4157 5073 1.967779 TCCAATCAACGACTCAGGTGA 59.032 47.619 0.00 0.00 42.62 4.02
4159 5075 1.971357 AGTCCAATCAACGACTCAGGT 59.029 47.619 0.00 0.00 34.15 4.00
4160 5076 2.738846 CAAGTCCAATCAACGACTCAGG 59.261 50.000 0.00 0.00 38.39 3.86
4161 5077 3.393800 ACAAGTCCAATCAACGACTCAG 58.606 45.455 0.00 0.00 38.39 3.35
4163 5079 4.035208 ACAAACAAGTCCAATCAACGACTC 59.965 41.667 0.00 0.00 38.39 3.36
4164 5080 3.945285 ACAAACAAGTCCAATCAACGACT 59.055 39.130 0.00 0.00 41.10 4.18
4165 5081 4.287238 ACAAACAAGTCCAATCAACGAC 57.713 40.909 0.00 0.00 0.00 4.34
4166 5082 4.513692 CCTACAAACAAGTCCAATCAACGA 59.486 41.667 0.00 0.00 0.00 3.85
4168 5084 5.767816 ACCTACAAACAAGTCCAATCAAC 57.232 39.130 0.00 0.00 0.00 3.18
4169 5085 5.654650 ACAACCTACAAACAAGTCCAATCAA 59.345 36.000 0.00 0.00 0.00 2.57
4170 5086 5.067153 CACAACCTACAAACAAGTCCAATCA 59.933 40.000 0.00 0.00 0.00 2.57
4172 5088 4.202111 GCACAACCTACAAACAAGTCCAAT 60.202 41.667 0.00 0.00 0.00 3.16
4173 5089 3.129638 GCACAACCTACAAACAAGTCCAA 59.870 43.478 0.00 0.00 0.00 3.53
4174 5090 2.685897 GCACAACCTACAAACAAGTCCA 59.314 45.455 0.00 0.00 0.00 4.02
4175 5091 2.286772 CGCACAACCTACAAACAAGTCC 60.287 50.000 0.00 0.00 0.00 3.85
4176 5092 2.353579 ACGCACAACCTACAAACAAGTC 59.646 45.455 0.00 0.00 0.00 3.01
4177 5093 2.096819 CACGCACAACCTACAAACAAGT 59.903 45.455 0.00 0.00 0.00 3.16
4178 5094 2.096819 ACACGCACAACCTACAAACAAG 59.903 45.455 0.00 0.00 0.00 3.16
4179 5095 2.085320 ACACGCACAACCTACAAACAA 58.915 42.857 0.00 0.00 0.00 2.83
4180 5096 1.666700 GACACGCACAACCTACAAACA 59.333 47.619 0.00 0.00 0.00 2.83
4181 5097 1.937899 AGACACGCACAACCTACAAAC 59.062 47.619 0.00 0.00 0.00 2.93
4182 5098 1.937223 CAGACACGCACAACCTACAAA 59.063 47.619 0.00 0.00 0.00 2.83
4183 5099 1.137282 TCAGACACGCACAACCTACAA 59.863 47.619 0.00 0.00 0.00 2.41
4184 5100 0.747852 TCAGACACGCACAACCTACA 59.252 50.000 0.00 0.00 0.00 2.74
4185 5101 1.137513 GTCAGACACGCACAACCTAC 58.862 55.000 0.00 0.00 0.00 3.18
4186 5102 0.318360 CGTCAGACACGCACAACCTA 60.318 55.000 0.41 0.00 42.87 3.08
4187 5103 1.591594 CGTCAGACACGCACAACCT 60.592 57.895 0.41 0.00 42.87 3.50
4188 5104 2.928361 CGTCAGACACGCACAACC 59.072 61.111 0.41 0.00 42.87 3.77
4199 5115 2.667969 CGTTTGCATCATCTTCGTCAGA 59.332 45.455 0.00 0.00 35.33 3.27
4200 5116 2.222886 CCGTTTGCATCATCTTCGTCAG 60.223 50.000 0.00 0.00 0.00 3.51
4220 5136 1.818221 CTATAAACCGCACGCTCGCC 61.818 60.000 0.00 0.00 0.00 5.54
4224 5140 3.068560 TGAAAACTATAAACCGCACGCT 58.931 40.909 0.00 0.00 0.00 5.07
4230 5146 6.578020 TGCGACTATGAAAACTATAAACCG 57.422 37.500 0.00 0.00 0.00 4.44
4233 5149 8.325282 CACGAATGCGACTATGAAAACTATAAA 58.675 33.333 0.00 0.00 41.64 1.40
4272 5188 1.221466 ATATCACACGAATGGGCGCG 61.221 55.000 0.00 0.00 33.86 6.86
4274 5190 1.864565 TGATATCACACGAATGGGCG 58.135 50.000 0.00 0.00 37.29 6.13
4283 5212 4.143158 GCTGCGATTCAGATGATATCACAC 60.143 45.833 7.78 5.63 45.72 3.82
4360 5290 1.784036 CGCATTCACACCTGCACACA 61.784 55.000 0.00 0.00 38.30 3.72
4368 5298 3.443045 CCCAGCCGCATTCACACC 61.443 66.667 0.00 0.00 0.00 4.16
4460 5400 3.700109 TCAGCTTCCCTGAGACCG 58.300 61.111 0.00 0.00 45.44 4.79
4483 5423 0.996762 TCCTCCTCTCCTCTCCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
4499 5439 0.937441 TGCCCTCTATCTGGTCTCCT 59.063 55.000 0.00 0.00 0.00 3.69
4500 5440 1.133325 TCTGCCCTCTATCTGGTCTCC 60.133 57.143 0.00 0.00 0.00 3.71
4501 5441 2.373335 TCTGCCCTCTATCTGGTCTC 57.627 55.000 0.00 0.00 0.00 3.36
4502 5442 2.856760 TTCTGCCCTCTATCTGGTCT 57.143 50.000 0.00 0.00 0.00 3.85
4574 5516 5.452078 AAAAGCATTGGAGTCGAATGAAA 57.548 34.783 26.47 0.00 33.36 2.69
4575 5517 5.471797 TGTAAAAGCATTGGAGTCGAATGAA 59.528 36.000 26.47 7.37 33.36 2.57
4576 5518 5.000591 TGTAAAAGCATTGGAGTCGAATGA 58.999 37.500 26.47 7.00 33.36 2.57
4577 5519 5.295431 TGTAAAAGCATTGGAGTCGAATG 57.705 39.130 20.14 20.14 34.47 2.67
4578 5520 5.957842 TTGTAAAAGCATTGGAGTCGAAT 57.042 34.783 0.00 0.00 0.00 3.34
4579 5521 5.759506 TTTGTAAAAGCATTGGAGTCGAA 57.240 34.783 0.00 0.00 0.00 3.71
4630 5599 1.027255 TCGAGGGCGAGAGAGTGAAG 61.027 60.000 0.00 0.00 42.51 3.02
4691 5660 6.128063 CCAAGGTAGAGATGCTTCTTTTTCAG 60.128 42.308 3.29 0.00 30.30 3.02
4693 5662 5.392487 GCCAAGGTAGAGATGCTTCTTTTTC 60.392 44.000 3.29 0.00 30.30 2.29
4722 5694 7.161404 AGTGAGACTGATATTAACTGTGCAAA 58.839 34.615 0.00 0.00 0.00 3.68
4750 6228 5.869753 AGCACTTGCAGTAAGAAATAGTG 57.130 39.130 5.10 5.26 45.16 2.74
4864 6414 2.101209 GATTTATCCCGGCGTGCGTG 62.101 60.000 6.01 0.00 0.00 5.34
4865 6415 1.885850 GATTTATCCCGGCGTGCGT 60.886 57.895 6.01 0.00 0.00 5.24
4866 6416 2.604174 GGATTTATCCCGGCGTGCG 61.604 63.158 6.01 0.00 41.20 5.34
4954 6505 6.044754 TGGGCATAGACAGATGGATAAAGAAT 59.955 38.462 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.