Multiple sequence alignment - TraesCS6D01G382300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G382300 chr6D 100.000 3000 0 0 3277 6276 462200547 462197548 0.000000e+00 5541.0
1 TraesCS6D01G382300 chr6D 100.000 2906 0 0 1 2906 462203823 462200918 0.000000e+00 5367.0
2 TraesCS6D01G382300 chr6D 77.948 653 101 32 5034 5657 462183669 462183031 9.940000e-98 368.0
3 TraesCS6D01G382300 chr6D 86.377 345 33 7 4539 4877 462192357 462192021 1.290000e-96 364.0
4 TraesCS6D01G382300 chr6D 77.606 259 32 15 5722 5967 462183013 462182768 3.950000e-27 134.0
5 TraesCS6D01G382300 chr6A 91.180 2721 157 36 3278 5951 609034901 609032217 0.000000e+00 3618.0
6 TraesCS6D01G382300 chr6A 95.528 2102 69 8 803 2894 609037412 609035326 0.000000e+00 3338.0
7 TraesCS6D01G382300 chr6A 80.649 832 104 30 1 812 609039321 609038527 5.420000e-165 592.0
8 TraesCS6D01G382300 chr6A 89.883 257 24 2 6021 6276 609032216 609031961 4.690000e-86 329.0
9 TraesCS6D01G382300 chr6B 93.279 2098 106 17 806 2899 704454400 704452334 0.000000e+00 3061.0
10 TraesCS6D01G382300 chr6B 87.767 1594 122 37 4438 5992 704451646 704450087 0.000000e+00 1796.0
11 TraesCS6D01G382300 chr6B 87.418 1065 76 23 4461 5495 702927854 702926818 0.000000e+00 1171.0
12 TraesCS6D01G382300 chr6B 86.864 845 54 21 4461 5273 702980535 702979716 0.000000e+00 893.0
13 TraesCS6D01G382300 chr6B 84.165 581 45 17 4461 5022 702908861 702908309 2.590000e-143 520.0
14 TraesCS6D01G382300 chr6B 92.523 321 17 6 5073 5387 702901978 702901659 2.670000e-123 453.0
15 TraesCS6D01G382300 chr6B 86.446 332 24 8 3501 3828 704452297 704451983 1.680000e-90 344.0
16 TraesCS6D01G382300 chr6B 89.231 260 23 4 5640 5897 703047459 703047203 2.820000e-83 320.0
17 TraesCS6D01G382300 chr6B 88.976 254 21 5 6022 6275 704449965 704449719 2.200000e-79 307.0
18 TraesCS6D01G382300 chr6B 88.372 258 25 4 5640 5895 703097091 703096837 7.900000e-79 305.0
19 TraesCS6D01G382300 chr6B 88.627 255 23 4 6021 6275 704445572 704445324 7.900000e-79 305.0
20 TraesCS6D01G382300 chr6B 82.402 358 47 11 5923 6276 703047209 703046864 1.320000e-76 298.0
21 TraesCS6D01G382300 chr6B 82.123 358 48 11 5923 6276 703096841 703096496 6.150000e-75 292.0
22 TraesCS6D01G382300 chr6B 81.844 358 48 12 5923 6276 703143385 703143041 1.030000e-72 285.0
23 TraesCS6D01G382300 chr6B 88.017 242 24 4 5656 5895 703143619 703143381 1.330000e-71 281.0
24 TraesCS6D01G382300 chr6B 81.040 327 47 10 5953 6276 702998963 702998649 4.860000e-61 246.0
25 TraesCS6D01G382300 chr6B 92.593 162 9 2 4030 4190 704451990 704451831 4.890000e-56 230.0
26 TraesCS6D01G382300 chr6B 92.025 163 12 1 4208 4370 704451846 704451685 1.760000e-55 228.0
27 TraesCS6D01G382300 chr6B 89.844 128 8 3 5827 5950 704445849 704445723 6.510000e-35 159.0
28 TraesCS6D01G382300 chr6B 85.437 103 13 2 5272 5373 702979638 702979537 8.600000e-19 106.0
29 TraesCS6D01G382300 chr6B 88.525 61 6 1 5492 5552 702926738 702926679 8.730000e-09 73.1
30 TraesCS6D01G382300 chr6B 97.297 37 1 0 3829 3865 704452014 704451978 5.250000e-06 63.9
31 TraesCS6D01G382300 chr5D 88.485 165 15 2 3864 4024 510619700 510619864 4.960000e-46 196.0
32 TraesCS6D01G382300 chr5D 86.857 175 16 3 3862 4030 37159677 37159850 8.310000e-44 189.0
33 TraesCS6D01G382300 chr5D 85.714 168 19 3 3862 4025 388831838 388832004 8.360000e-39 172.0
34 TraesCS6D01G382300 chr4B 88.554 166 14 4 3865 4026 519194222 519194058 4.960000e-46 196.0
35 TraesCS6D01G382300 chr7D 87.059 170 17 3 3865 4029 5158876 5158707 2.990000e-43 187.0
36 TraesCS6D01G382300 chr7D 87.179 156 16 2 3873 4024 575360595 575360440 2.330000e-39 174.0
37 TraesCS6D01G382300 chr1A 85.057 174 15 8 3864 4029 20921788 20921958 3.890000e-37 167.0
38 TraesCS6D01G382300 chr3A 89.216 102 11 0 3878 3979 586084304 586084405 1.840000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G382300 chr6D 462197548 462203823 6275 True 5454.000000 5541 100.000000 1 6276 2 chr6D.!!$R3 6275
1 TraesCS6D01G382300 chr6D 462182768 462183669 901 True 251.000000 368 77.777000 5034 5967 2 chr6D.!!$R2 933
2 TraesCS6D01G382300 chr6A 609031961 609039321 7360 True 1969.250000 3618 89.310000 1 6276 4 chr6A.!!$R1 6275
3 TraesCS6D01G382300 chr6B 704445324 704454400 9076 True 721.544444 3061 90.761556 806 6275 9 chr6B.!!$R9 5469
4 TraesCS6D01G382300 chr6B 702926679 702927854 1175 True 622.050000 1171 87.971500 4461 5552 2 chr6B.!!$R4 1091
5 TraesCS6D01G382300 chr6B 702908309 702908861 552 True 520.000000 520 84.165000 4461 5022 1 chr6B.!!$R2 561
6 TraesCS6D01G382300 chr6B 702979537 702980535 998 True 499.500000 893 86.150500 4461 5373 2 chr6B.!!$R5 912
7 TraesCS6D01G382300 chr6B 703046864 703047459 595 True 309.000000 320 85.816500 5640 6276 2 chr6B.!!$R6 636
8 TraesCS6D01G382300 chr6B 703096496 703097091 595 True 298.500000 305 85.247500 5640 6276 2 chr6B.!!$R7 636
9 TraesCS6D01G382300 chr6B 703143041 703143619 578 True 283.000000 285 84.930500 5656 6276 2 chr6B.!!$R8 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 699 0.034477 CCAATTAGGGCGAAGGGTGT 60.034 55.0 0.00 0.0 0.00 4.16 F
689 701 0.679960 AATTAGGGCGAAGGGTGTGC 60.680 55.0 0.00 0.0 0.00 4.57 F
2401 3554 0.610687 GACAGGGAAGGTGACTGAGG 59.389 60.0 0.00 0.0 42.68 3.86 F
2631 3784 0.754472 GCCTGGCCAATGCATACAAT 59.246 50.0 19.35 0.0 40.13 2.71 F
3392 4587 0.179134 CGAGATCAGGACGGACCAAC 60.179 60.0 0.00 0.0 42.04 3.77 F
4610 5834 0.108615 ACCGAATTGACGAGCTCCAG 60.109 55.0 8.47 0.0 35.09 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 3151 1.420641 CGATCTTGATGTTCGCCGCA 61.421 55.0 0.00 0.00 32.23 5.69 R
2572 3725 1.500474 TCTGAATGGTGAGGCCCTAG 58.500 55.0 0.00 0.00 36.04 3.02 R
3373 4568 0.179134 GTTGGTCCGTCCTGATCTCG 60.179 60.0 0.00 0.00 37.07 4.04 R
3762 4957 0.249073 GAAGCTGAAGCCTATCGCGA 60.249 55.0 13.09 13.09 44.76 5.87 R
5064 6340 0.255890 TTGGAACTCCATAGCCAGGC 59.744 55.0 1.84 1.84 46.97 4.85 R
5666 7167 0.402121 AACTGGAGTTCTGGCCCTTC 59.598 55.0 0.00 0.00 31.64 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.213206 TCAACTCTGCAGAACAACCAT 57.787 42.857 18.85 0.00 0.00 3.55
39 40 2.880268 CAACTCTGCAGAACAACCATGA 59.120 45.455 18.85 0.00 0.00 3.07
54 55 8.498054 AACAACCATGATATGTTAGTTCTCAG 57.502 34.615 8.39 0.00 35.63 3.35
55 56 7.624549 ACAACCATGATATGTTAGTTCTCAGT 58.375 34.615 0.00 0.00 0.00 3.41
74 75 3.300590 CAGTCGAACTTGCAAACACAAAC 59.699 43.478 0.00 0.00 0.00 2.93
75 76 3.057876 AGTCGAACTTGCAAACACAAACA 60.058 39.130 0.00 0.00 0.00 2.83
79 80 5.234329 TCGAACTTGCAAACACAAACAAAAA 59.766 32.000 0.00 0.00 0.00 1.94
104 107 4.090761 AGAGAATGCAGTTGAGGAAACA 57.909 40.909 0.00 0.00 41.61 2.83
105 108 3.817647 AGAGAATGCAGTTGAGGAAACAC 59.182 43.478 0.00 0.00 41.61 3.32
106 109 3.554934 AGAATGCAGTTGAGGAAACACA 58.445 40.909 0.00 0.00 41.61 3.72
108 111 4.586001 AGAATGCAGTTGAGGAAACACAAT 59.414 37.500 0.00 0.00 42.85 2.71
109 112 4.942761 ATGCAGTTGAGGAAACACAATT 57.057 36.364 0.00 0.00 42.85 2.32
110 113 4.044336 TGCAGTTGAGGAAACACAATTG 57.956 40.909 3.24 3.24 46.31 2.32
111 114 3.181477 TGCAGTTGAGGAAACACAATTGG 60.181 43.478 10.83 1.35 44.66 3.16
112 115 3.068024 GCAGTTGAGGAAACACAATTGGA 59.932 43.478 10.83 0.00 44.66 3.53
113 116 4.441356 GCAGTTGAGGAAACACAATTGGAA 60.441 41.667 10.83 0.00 44.66 3.53
114 117 5.739935 GCAGTTGAGGAAACACAATTGGAAT 60.740 40.000 10.83 0.00 44.66 3.01
115 118 5.693104 CAGTTGAGGAAACACAATTGGAATG 59.307 40.000 10.83 1.52 42.20 2.67
116 119 5.363580 AGTTGAGGAAACACAATTGGAATGT 59.636 36.000 10.83 2.21 42.85 2.71
117 120 6.549364 AGTTGAGGAAACACAATTGGAATGTA 59.451 34.615 10.83 0.00 42.85 2.29
120 123 7.206687 TGAGGAAACACAATTGGAATGTAAAC 58.793 34.615 10.83 0.00 0.00 2.01
123 126 7.494298 AGGAAACACAATTGGAATGTAAACAAC 59.506 33.333 10.83 0.00 0.00 3.32
135 138 6.463755 GGAATGTAAACAACCAAACAGGGAAT 60.464 38.462 0.00 0.00 43.89 3.01
136 139 5.269505 TGTAAACAACCAAACAGGGAATG 57.730 39.130 0.00 0.00 43.89 2.67
139 142 1.047002 CAACCAAACAGGGAATGCCA 58.953 50.000 0.00 0.00 43.89 4.92
140 143 1.415659 CAACCAAACAGGGAATGCCAA 59.584 47.619 0.00 0.00 43.89 4.52
143 146 2.302733 ACCAAACAGGGAATGCCAAATC 59.697 45.455 0.00 0.00 43.89 2.17
147 150 2.450476 ACAGGGAATGCCAAATCTGAC 58.550 47.619 0.97 0.00 35.15 3.51
178 181 9.268268 CTCAACCAAGTATCACAAACTTAAGTA 57.732 33.333 8.92 0.00 35.44 2.24
210 213 4.338815 TTGGTCGCCAAAACACCA 57.661 50.000 8.58 0.00 40.92 4.17
212 215 0.965866 TTGGTCGCCAAAACACCACA 60.966 50.000 8.58 0.00 40.92 4.17
213 216 0.965866 TGGTCGCCAAAACACCACAA 60.966 50.000 0.00 0.00 35.16 3.33
214 217 0.526739 GGTCGCCAAAACACCACAAC 60.527 55.000 0.00 0.00 0.00 3.32
215 218 0.171455 GTCGCCAAAACACCACAACA 59.829 50.000 0.00 0.00 0.00 3.33
216 219 0.888619 TCGCCAAAACACCACAACAA 59.111 45.000 0.00 0.00 0.00 2.83
217 220 1.272490 TCGCCAAAACACCACAACAAA 59.728 42.857 0.00 0.00 0.00 2.83
218 221 2.069273 CGCCAAAACACCACAACAAAA 58.931 42.857 0.00 0.00 0.00 2.44
220 223 3.126000 CGCCAAAACACCACAACAAAATT 59.874 39.130 0.00 0.00 0.00 1.82
221 224 4.330074 CGCCAAAACACCACAACAAAATTA 59.670 37.500 0.00 0.00 0.00 1.40
222 225 5.501574 CGCCAAAACACCACAACAAAATTAG 60.502 40.000 0.00 0.00 0.00 1.73
234 237 8.063630 CCACAACAAAATTAGAACAAAATCAGC 58.936 33.333 0.00 0.00 0.00 4.26
238 241 9.986833 AACAAAATTAGAACAAAATCAGCAAAC 57.013 25.926 0.00 0.00 0.00 2.93
249 252 6.128007 ACAAAATCAGCAAACCCTAACTATCG 60.128 38.462 0.00 0.00 0.00 2.92
252 255 3.118884 TCAGCAAACCCTAACTATCGTCC 60.119 47.826 0.00 0.00 0.00 4.79
253 256 2.835764 AGCAAACCCTAACTATCGTCCA 59.164 45.455 0.00 0.00 0.00 4.02
258 261 4.246712 ACCCTAACTATCGTCCAAGAGA 57.753 45.455 0.00 0.00 0.00 3.10
262 265 5.450688 CCCTAACTATCGTCCAAGAGACTTG 60.451 48.000 4.73 4.73 43.91 3.16
269 272 2.421619 GTCCAAGAGACTTGCAGGAAG 58.578 52.381 1.40 0.00 42.69 3.46
273 276 1.204113 AGAGACTTGCAGGAAGGGGG 61.204 60.000 1.40 0.00 35.78 5.40
335 338 1.200020 GCACAAACGAGGAAGGAATGG 59.800 52.381 0.00 0.00 0.00 3.16
336 339 2.504367 CACAAACGAGGAAGGAATGGT 58.496 47.619 0.00 0.00 0.00 3.55
337 340 2.226437 CACAAACGAGGAAGGAATGGTG 59.774 50.000 0.00 0.00 0.00 4.17
338 341 2.105821 ACAAACGAGGAAGGAATGGTGA 59.894 45.455 0.00 0.00 0.00 4.02
342 345 2.496470 ACGAGGAAGGAATGGTGACTAC 59.504 50.000 0.00 0.00 0.00 2.73
343 346 2.496070 CGAGGAAGGAATGGTGACTACA 59.504 50.000 0.00 0.00 0.00 2.74
352 355 4.101741 GGAATGGTGACTACAGGCTATTCT 59.898 45.833 0.00 0.00 0.00 2.40
355 358 4.093743 TGGTGACTACAGGCTATTCTTCA 58.906 43.478 0.00 0.00 0.00 3.02
356 359 4.716784 TGGTGACTACAGGCTATTCTTCAT 59.283 41.667 0.00 0.00 0.00 2.57
362 365 7.981789 TGACTACAGGCTATTCTTCATAACTTG 59.018 37.037 0.00 0.00 0.00 3.16
363 366 7.852263 ACTACAGGCTATTCTTCATAACTTGT 58.148 34.615 0.00 0.00 30.88 3.16
365 368 9.167311 CTACAGGCTATTCTTCATAACTTGTTT 57.833 33.333 0.00 0.00 29.22 2.83
370 373 6.749118 GCTATTCTTCATAACTTGTTTGCCAG 59.251 38.462 0.00 0.00 0.00 4.85
374 377 5.592282 TCTTCATAACTTGTTTGCCAGACAA 59.408 36.000 0.53 0.53 35.81 3.18
375 378 6.265196 TCTTCATAACTTGTTTGCCAGACAAT 59.735 34.615 0.84 0.00 38.31 2.71
376 379 5.771469 TCATAACTTGTTTGCCAGACAATG 58.229 37.500 0.84 0.00 38.31 2.82
394 397 6.265196 AGACAATGTCTGCCAACAAAATTAGA 59.735 34.615 15.96 0.00 41.76 2.10
403 406 7.652909 TCTGCCAACAAAATTAGAACAAATCAG 59.347 33.333 0.00 0.00 0.00 2.90
414 417 5.453567 AGAACAAATCAGCAAACCCTAAC 57.546 39.130 0.00 0.00 0.00 2.34
421 424 4.650972 TCAGCAAACCCTAACTACCATT 57.349 40.909 0.00 0.00 0.00 3.16
422 425 4.585879 TCAGCAAACCCTAACTACCATTC 58.414 43.478 0.00 0.00 0.00 2.67
428 431 4.246712 ACCCTAACTACCATTCGAGAGA 57.753 45.455 0.00 0.00 39.20 3.10
435 438 3.449018 ACTACCATTCGAGAGACTTGCAT 59.551 43.478 0.00 0.00 41.84 3.96
458 467 3.990959 AGGGGTGAGAAGATGAAGAAC 57.009 47.619 0.00 0.00 0.00 3.01
459 468 3.525862 AGGGGTGAGAAGATGAAGAACT 58.474 45.455 0.00 0.00 0.00 3.01
461 470 4.714308 AGGGGTGAGAAGATGAAGAACTAG 59.286 45.833 0.00 0.00 0.00 2.57
462 471 4.712337 GGGGTGAGAAGATGAAGAACTAGA 59.288 45.833 0.00 0.00 0.00 2.43
463 472 5.163457 GGGGTGAGAAGATGAAGAACTAGAG 60.163 48.000 0.00 0.00 0.00 2.43
468 480 1.066303 AGATGAAGAACTAGAGCGCCG 59.934 52.381 2.29 0.00 0.00 6.46
477 489 3.931190 TAGAGCGCCGACCACCTCA 62.931 63.158 2.29 0.00 0.00 3.86
481 493 4.760047 CGCCGACCACCTCAAGGG 62.760 72.222 0.29 0.00 40.27 3.95
482 494 3.319198 GCCGACCACCTCAAGGGA 61.319 66.667 0.29 0.00 40.27 4.20
483 495 2.982130 CCGACCACCTCAAGGGAG 59.018 66.667 0.29 0.00 40.27 4.30
486 498 1.592223 GACCACCTCAAGGGAGACG 59.408 63.158 0.29 0.00 44.26 4.18
496 508 1.205893 CAAGGGAGACGAAGGAGGAAG 59.794 57.143 0.00 0.00 0.00 3.46
505 517 1.476891 CGAAGGAGGAAGGAATGACGA 59.523 52.381 0.00 0.00 0.00 4.20
507 519 0.818296 AGGAGGAAGGAATGACGACG 59.182 55.000 0.00 0.00 0.00 5.12
508 520 0.815734 GGAGGAAGGAATGACGACGA 59.184 55.000 0.00 0.00 0.00 4.20
509 521 1.409427 GGAGGAAGGAATGACGACGAT 59.591 52.381 0.00 0.00 0.00 3.73
515 527 3.313012 AGGAATGACGACGATGACAAA 57.687 42.857 0.00 0.00 0.00 2.83
521 533 3.908213 TGACGACGATGACAAAGAATCA 58.092 40.909 0.00 0.00 0.00 2.57
531 543 7.148507 ACGATGACAAAGAATCAAGATGAAGAC 60.149 37.037 0.00 0.00 0.00 3.01
532 544 7.148523 CGATGACAAAGAATCAAGATGAAGACA 60.149 37.037 0.00 0.00 0.00 3.41
533 545 7.991084 TGACAAAGAATCAAGATGAAGACAT 57.009 32.000 0.00 0.00 39.67 3.06
537 549 9.381033 ACAAAGAATCAAGATGAAGACATAGAG 57.619 33.333 0.00 0.00 36.82 2.43
543 555 6.743110 TCAAGATGAAGACATAGAGGAATCG 58.257 40.000 0.00 0.00 36.82 3.34
550 562 5.255397 AGACATAGAGGAATCGAGAGGAT 57.745 43.478 0.00 0.00 36.78 3.24
551 563 5.253330 AGACATAGAGGAATCGAGAGGATC 58.747 45.833 0.00 0.00 33.02 3.36
561 573 2.744166 ATCGAGAGGATCGGTTACACGA 60.744 50.000 0.00 0.00 44.13 4.35
562 574 4.597835 ATCGAGAGGATCGGTTACACGAG 61.598 52.174 0.00 0.00 44.13 4.18
570 582 3.880047 TCGGTTACACGAGGAATGAAT 57.120 42.857 0.00 0.00 38.06 2.57
572 584 2.607635 CGGTTACACGAGGAATGAATGG 59.392 50.000 0.00 0.00 35.47 3.16
577 589 0.179073 ACGAGGAATGAATGGGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
580 592 0.471617 AGGAATGAATGGGAGCGAGG 59.528 55.000 0.00 0.00 0.00 4.63
588 600 2.806945 ATGGGAGCGAGGAAAAATGA 57.193 45.000 0.00 0.00 0.00 2.57
589 601 2.577606 TGGGAGCGAGGAAAAATGAA 57.422 45.000 0.00 0.00 0.00 2.57
600 612 5.122239 CGAGGAAAAATGAATGCACTAGTCA 59.878 40.000 0.00 0.00 37.84 3.41
603 615 5.183904 GGAAAAATGAATGCACTAGTCAGGT 59.816 40.000 0.00 0.00 36.75 4.00
608 620 5.222079 TGAATGCACTAGTCAGGTTACAA 57.778 39.130 0.00 0.00 0.00 2.41
619 631 2.635915 TCAGGTTACAATGGAGTCGGTT 59.364 45.455 0.00 0.00 0.00 4.44
630 642 2.637872 TGGAGTCGGTTGAAAGAGGAAT 59.362 45.455 0.00 0.00 0.00 3.01
631 643 3.003480 GGAGTCGGTTGAAAGAGGAATG 58.997 50.000 0.00 0.00 0.00 2.67
639 651 5.121454 CGGTTGAAAGAGGAATGAAGAAGAG 59.879 44.000 0.00 0.00 0.00 2.85
640 652 6.234177 GGTTGAAAGAGGAATGAAGAAGAGA 58.766 40.000 0.00 0.00 0.00 3.10
641 653 6.712547 GGTTGAAAGAGGAATGAAGAAGAGAA 59.287 38.462 0.00 0.00 0.00 2.87
642 654 7.229506 GGTTGAAAGAGGAATGAAGAAGAGAAA 59.770 37.037 0.00 0.00 0.00 2.52
643 655 8.624776 GTTGAAAGAGGAATGAAGAAGAGAAAA 58.375 33.333 0.00 0.00 0.00 2.29
644 656 8.752005 TGAAAGAGGAATGAAGAAGAGAAAAA 57.248 30.769 0.00 0.00 0.00 1.94
686 698 2.793831 CCAATTAGGGCGAAGGGTG 58.206 57.895 0.00 0.00 0.00 4.61
687 699 0.034477 CCAATTAGGGCGAAGGGTGT 60.034 55.000 0.00 0.00 0.00 4.16
688 700 1.094785 CAATTAGGGCGAAGGGTGTG 58.905 55.000 0.00 0.00 0.00 3.82
689 701 0.679960 AATTAGGGCGAAGGGTGTGC 60.680 55.000 0.00 0.00 0.00 4.57
690 702 2.869503 ATTAGGGCGAAGGGTGTGCG 62.870 60.000 0.00 0.00 0.00 5.34
706 718 3.726517 CGGCGCCCTGACAGTTTG 61.727 66.667 23.46 0.00 0.00 2.93
707 719 2.281484 GGCGCCCTGACAGTTTGA 60.281 61.111 18.11 0.00 0.00 2.69
708 720 2.617274 GGCGCCCTGACAGTTTGAC 61.617 63.158 18.11 0.00 0.00 3.18
750 763 6.208988 GGTTTTCCCAAAGATCATCCTTAC 57.791 41.667 0.00 0.00 0.00 2.34
751 764 5.714806 GGTTTTCCCAAAGATCATCCTTACA 59.285 40.000 0.00 0.00 0.00 2.41
752 765 6.127619 GGTTTTCCCAAAGATCATCCTTACAG 60.128 42.308 0.00 0.00 0.00 2.74
753 766 6.387192 TTTCCCAAAGATCATCCTTACAGA 57.613 37.500 0.00 0.00 0.00 3.41
754 767 6.387192 TTCCCAAAGATCATCCTTACAGAA 57.613 37.500 0.00 0.00 0.00 3.02
796 809 6.390721 GGCTGGATAGTTTTTCTTCCTTTTC 58.609 40.000 0.00 0.00 0.00 2.29
866 2003 0.955919 CAAGAACGGCCCAGAACCTC 60.956 60.000 0.00 0.00 0.00 3.85
883 2033 0.802607 CTCCACGTTTAGGAGCTCGC 60.803 60.000 7.83 0.47 45.51 5.03
899 2049 1.066303 CTCGCATCGAAAGCCTAGAGT 59.934 52.381 7.52 0.00 34.74 3.24
1824 2977 4.421515 AAGGCGCTGGAGCTGCAT 62.422 61.111 8.91 7.13 40.46 3.96
1998 3151 4.347360 TCTCATTCATGCCGAGATTGAT 57.653 40.909 4.91 0.00 30.94 2.57
2091 3244 1.219124 GGAGAAGGACAGCGATGCA 59.781 57.895 0.00 0.00 0.00 3.96
2229 3382 2.281484 GACAAGGTGGCCGAAGCA 60.281 61.111 0.00 0.00 42.56 3.91
2269 3422 4.327357 CACTGTACGAGATGGTGAATGAAC 59.673 45.833 0.00 0.00 0.00 3.18
2401 3554 0.610687 GACAGGGAAGGTGACTGAGG 59.389 60.000 0.00 0.00 42.68 3.86
2448 3601 6.000840 AGTGGAGAGGATGAAAGAAAGTTTC 58.999 40.000 7.57 7.57 0.00 2.78
2572 3725 3.372440 AGGAAGTCATGGATGTTTCCC 57.628 47.619 15.73 0.00 41.83 3.97
2616 3769 1.834856 TTGAGACCTGCCAGAGCCTG 61.835 60.000 0.00 0.00 38.69 4.85
2631 3784 0.754472 GCCTGGCCAATGCATACAAT 59.246 50.000 19.35 0.00 40.13 2.71
2650 3803 5.206587 ACAATACGATGGGAAGGTACTACT 58.793 41.667 0.00 0.00 38.49 2.57
2699 3852 2.797491 GTGTTCACTCAAACAGCAACC 58.203 47.619 0.00 0.00 39.69 3.77
2795 3948 4.996758 GGTTTGTTTTTGCATATTCCTGCT 59.003 37.500 0.00 0.00 42.75 4.24
2801 3954 8.082334 TGTTTTTGCATATTCCTGCTTTTTAC 57.918 30.769 0.00 0.00 42.75 2.01
2815 3968 7.722285 TCCTGCTTTTTACCTAAGTTTACATGT 59.278 33.333 2.69 2.69 0.00 3.21
2899 4053 2.501723 AGACTGTTGGGTGCTACATAGG 59.498 50.000 0.00 0.00 0.00 2.57
2901 4055 2.027192 ACTGTTGGGTGCTACATAGGTG 60.027 50.000 0.00 0.00 0.00 4.00
2903 4057 2.027561 TGTTGGGTGCTACATAGGTGAC 60.028 50.000 0.00 0.00 0.00 3.67
3392 4587 0.179134 CGAGATCAGGACGGACCAAC 60.179 60.000 0.00 0.00 42.04 3.77
3393 4588 0.895530 GAGATCAGGACGGACCAACA 59.104 55.000 0.00 0.00 42.04 3.33
3426 4621 6.303259 CGAGGACGACTCATTTTGAAAAATTC 59.697 38.462 11.28 0.00 46.98 2.17
3468 4663 0.242555 GTGCCAACCCACATAAACCG 59.757 55.000 0.00 0.00 35.80 4.44
3506 4701 5.984725 TGTCTTCGCCAGGATTCTTTATAA 58.015 37.500 0.00 0.00 0.00 0.98
3510 4705 4.957296 TCGCCAGGATTCTTTATAACTCC 58.043 43.478 0.00 0.00 0.00 3.85
3630 4825 3.262405 ACAAAAGGGCAATGAAGCATGAT 59.738 39.130 0.00 0.00 35.83 2.45
3632 4827 3.814005 AAGGGCAATGAAGCATGATTC 57.186 42.857 16.73 16.73 35.83 2.52
3633 4828 3.028094 AGGGCAATGAAGCATGATTCT 57.972 42.857 23.12 7.44 35.83 2.40
3634 4829 2.957006 AGGGCAATGAAGCATGATTCTC 59.043 45.455 23.12 10.33 35.83 2.87
3635 4830 2.957006 GGGCAATGAAGCATGATTCTCT 59.043 45.455 23.12 9.08 35.83 3.10
3636 4831 3.004524 GGGCAATGAAGCATGATTCTCTC 59.995 47.826 23.12 10.33 35.83 3.20
3637 4832 3.630769 GGCAATGAAGCATGATTCTCTCA 59.369 43.478 23.12 5.39 38.53 3.27
3638 4833 4.097437 GGCAATGAAGCATGATTCTCTCAA 59.903 41.667 23.12 4.26 37.44 3.02
3639 4834 5.035443 GCAATGAAGCATGATTCTCTCAAC 58.965 41.667 23.12 5.89 37.44 3.18
3640 4835 5.392703 GCAATGAAGCATGATTCTCTCAACA 60.393 40.000 23.12 3.47 37.44 3.33
3641 4836 6.258899 CAATGAAGCATGATTCTCTCAACAG 58.741 40.000 23.12 2.95 37.44 3.16
3642 4837 4.903054 TGAAGCATGATTCTCTCAACAGT 58.097 39.130 23.12 0.00 37.44 3.55
3643 4838 4.694037 TGAAGCATGATTCTCTCAACAGTG 59.306 41.667 23.12 0.00 37.44 3.66
3644 4839 4.548451 AGCATGATTCTCTCAACAGTGA 57.452 40.909 0.00 0.00 37.44 3.41
3645 4840 5.100344 AGCATGATTCTCTCAACAGTGAT 57.900 39.130 0.00 0.00 37.44 3.06
3646 4841 6.231258 AGCATGATTCTCTCAACAGTGATA 57.769 37.500 0.00 0.00 37.44 2.15
3647 4842 6.647229 AGCATGATTCTCTCAACAGTGATAA 58.353 36.000 0.00 0.00 37.44 1.75
3665 4860 4.823442 TGATAAAGCTGCCGATTCAATCAT 59.177 37.500 0.00 0.00 0.00 2.45
3693 4888 2.032681 GCCCTCACAGTCCCACAC 59.967 66.667 0.00 0.00 0.00 3.82
3725 4920 8.843262 TCAGATTGTTATTCTTGATATTGCCAG 58.157 33.333 0.00 0.00 0.00 4.85
3763 4958 1.941325 CTGACCCAGCGGAGTATTTC 58.059 55.000 0.00 0.00 0.00 2.17
3771 4966 1.337821 GCGGAGTATTTCGCGATAGG 58.662 55.000 10.88 0.00 42.48 2.57
3795 4994 6.287525 GCTTCAGCTTCCAAGAGATAGTATT 58.712 40.000 1.69 0.00 38.21 1.89
3817 5016 9.169592 GTATTTGGGCTGTTAACTAACTGAATA 57.830 33.333 7.22 3.26 37.33 1.75
3821 5020 8.086143 TGGGCTGTTAACTAACTGAATAGTAT 57.914 34.615 7.22 0.00 37.33 2.12
3822 5021 8.202137 TGGGCTGTTAACTAACTGAATAGTATC 58.798 37.037 7.22 0.00 37.33 2.24
3823 5022 8.422566 GGGCTGTTAACTAACTGAATAGTATCT 58.577 37.037 7.22 0.00 37.33 1.98
3824 5023 9.250624 GGCTGTTAACTAACTGAATAGTATCTG 57.749 37.037 7.22 0.00 37.33 2.90
3825 5024 9.250624 GCTGTTAACTAACTGAATAGTATCTGG 57.749 37.037 7.22 0.00 37.33 3.86
3833 5032 6.019656 ACTGAATAGTATCTGGAGTCTGGA 57.980 41.667 0.00 0.00 34.74 3.86
3838 5037 4.054359 AGTATCTGGAGTCTGGACTGTT 57.946 45.455 8.06 0.00 42.66 3.16
3866 5065 3.688185 ACTGAATGTTCTGCAGCATAGTG 59.312 43.478 9.47 4.27 33.03 2.74
3916 5115 1.975407 GCTGTGTGCCTTGGCAGAT 60.975 57.895 15.31 0.00 35.15 2.90
3928 5127 1.808411 TGGCAGATCCAAGTTCGAAC 58.192 50.000 20.71 20.71 43.21 3.95
3933 5132 1.087501 GATCCAAGTTCGAACCCTGC 58.912 55.000 24.22 6.24 0.00 4.85
4020 5223 1.952621 CTCCTCCCCTGTTGGTCTAA 58.047 55.000 0.00 0.00 0.00 2.10
4088 5292 8.458843 TCCATTTGAGTTTCGGAATTAATTCTC 58.541 33.333 23.85 14.53 37.00 2.87
4104 5308 2.539432 TCTCTGAAGGCCTCTCATCA 57.461 50.000 5.23 4.96 0.00 3.07
4164 5368 1.625315 TCCGAGCTGCCAGCATATAAT 59.375 47.619 20.53 0.00 45.56 1.28
4166 5370 1.736126 CGAGCTGCCAGCATATAATGG 59.264 52.381 20.53 0.00 45.56 3.16
4241 5447 1.470098 CACCAATCTGTAGCCACTTGC 59.530 52.381 0.00 0.00 41.71 4.01
4332 5538 0.807496 GTCTCATTGCAGGGAACAGC 59.193 55.000 0.00 0.00 44.24 4.40
4377 5595 1.135960 TGTCCCAACCATGTCAGACA 58.864 50.000 5.50 5.50 30.99 3.41
4378 5596 1.704628 TGTCCCAACCATGTCAGACAT 59.295 47.619 10.53 10.53 39.91 3.06
4388 5606 0.908910 TGTCAGACATAATGCCCGGT 59.091 50.000 0.00 0.00 0.00 5.28
4407 5625 6.617879 CCCGGTTAAAGAAATCTAGGTTTTG 58.382 40.000 1.72 0.00 0.00 2.44
4416 5634 3.721087 ATCTAGGTTTTGGACACCCAG 57.279 47.619 0.00 0.00 44.60 4.45
4427 5645 0.110486 GACACCCAGACCACCACAAT 59.890 55.000 0.00 0.00 0.00 2.71
4433 5651 5.013547 CACCCAGACCACCACAATATTTAA 58.986 41.667 0.00 0.00 0.00 1.52
4490 5708 5.635278 TTCTCCATTAGCATTCTCATCCA 57.365 39.130 0.00 0.00 0.00 3.41
4569 5792 5.838521 AGGGAGGAAAAGCAGTGAAAATTAA 59.161 36.000 0.00 0.00 0.00 1.40
4574 5798 8.763049 AGGAAAAGCAGTGAAAATTAATAAGC 57.237 30.769 0.00 0.00 0.00 3.09
4610 5834 0.108615 ACCGAATTGACGAGCTCCAG 60.109 55.000 8.47 0.00 35.09 3.86
4757 5991 2.210424 GCAGAGAGCCCATCTGACT 58.790 57.895 13.09 0.00 45.80 3.41
4797 6031 3.417069 TCACTCGAATCCAAACCATGT 57.583 42.857 0.00 0.00 0.00 3.21
4929 6193 6.693315 ATTATAACCACACAGTTGTATGCC 57.307 37.500 0.00 0.00 33.30 4.40
4980 6245 4.746535 TGGGACTAATTGAGCAACGATA 57.253 40.909 0.00 0.00 0.00 2.92
5022 6294 9.476202 AGTAATTTGTTATGCCTTTTGACTTTC 57.524 29.630 0.00 0.00 0.00 2.62
5064 6340 5.957798 TCTTCTTTTGAAATGCAGCTATGG 58.042 37.500 0.00 0.00 38.07 2.74
5248 6528 2.897326 TCAGGAACAGGAAGTCGATTCA 59.103 45.455 0.00 0.00 39.91 2.57
5283 6642 4.024048 AGTCGCACAACAGTAATTTGGAAG 60.024 41.667 0.00 0.00 0.00 3.46
5292 6651 5.120399 ACAGTAATTTGGAAGTTCACGTCA 58.880 37.500 5.01 0.00 0.00 4.35
5306 6665 5.921408 AGTTCACGTCATGTACTCTTTTCTC 59.079 40.000 0.00 0.00 33.99 2.87
5418 6812 8.397575 TCTGCAGTCTATCTAAAGTAATCGAT 57.602 34.615 14.67 0.00 0.00 3.59
5478 6872 7.754851 TTGAACTATTGGGTTAGGAGTTTTC 57.245 36.000 0.00 0.00 30.66 2.29
5479 6873 7.086685 TGAACTATTGGGTTAGGAGTTTTCT 57.913 36.000 0.00 0.00 30.66 2.52
5538 7020 5.127491 AGTCCAAGAAATCAACGTTTGGTA 58.873 37.500 11.57 0.00 39.39 3.25
5661 7162 5.011431 TGCTAAGATCAGGATATCACAGTGG 59.989 44.000 4.83 0.00 0.00 4.00
5666 7167 1.043816 AGGATATCACAGTGGGCTCG 58.956 55.000 4.83 0.00 0.00 5.03
5682 7183 1.535444 TCGAAGGGCCAGAACTCCA 60.535 57.895 6.18 0.00 0.00 3.86
5715 7221 5.411053 CCTTCTCACTTCATGTCCTTCTTTC 59.589 44.000 0.00 0.00 0.00 2.62
5720 7226 4.690748 CACTTCATGTCCTTCTTTCGCTTA 59.309 41.667 0.00 0.00 0.00 3.09
5735 7241 4.330944 TCGCTTACCTCTGAAGTTTCAA 57.669 40.909 0.00 0.00 36.64 2.69
5993 12004 6.491383 ACCTGTGACACCTTAGAACTATCTA 58.509 40.000 2.45 0.00 37.10 1.98
6018 12029 4.255833 TGAATCTTTCAAGCGGCAAAAT 57.744 36.364 1.45 0.00 36.59 1.82
6019 12030 4.630111 TGAATCTTTCAAGCGGCAAAATT 58.370 34.783 1.45 0.00 36.59 1.82
6127 12168 2.825836 CCCATGGAAGCGAGTGCC 60.826 66.667 15.22 0.00 44.31 5.01
6169 12210 0.601046 TCTTCTTGCTGCGGTGTCAG 60.601 55.000 0.00 0.00 37.15 3.51
6179 12220 1.222115 GCGGTGTCAGTGTGTCTTCC 61.222 60.000 0.00 0.00 0.00 3.46
6224 12265 1.341156 CCTGGATGACCACCTCCTCC 61.341 65.000 0.00 0.00 41.77 4.30
6226 12267 2.073101 GGATGACCACCTCCTCCCC 61.073 68.421 0.00 0.00 35.97 4.81
6231 12272 2.041405 CCACCTCCTCCCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.149973 TCTGCAGAGTTGAAGGTAAATCATTG 59.850 38.462 13.74 0.00 30.13 2.82
13 14 2.945668 GTTGTTCTGCAGAGTTGAAGGT 59.054 45.455 17.43 0.00 30.13 3.50
22 23 4.847198 ACATATCATGGTTGTTCTGCAGA 58.153 39.130 13.74 13.74 33.60 4.26
54 55 3.238441 TGTTTGTGTTTGCAAGTTCGAC 58.762 40.909 0.00 0.00 0.00 4.20
55 56 3.560902 TGTTTGTGTTTGCAAGTTCGA 57.439 38.095 0.00 0.00 0.00 3.71
79 80 4.090761 TCCTCAACTGCATTCTCTTGTT 57.909 40.909 0.00 0.00 0.00 2.83
84 85 3.565482 TGTGTTTCCTCAACTGCATTCTC 59.435 43.478 0.00 0.00 36.21 2.87
85 86 3.554934 TGTGTTTCCTCAACTGCATTCT 58.445 40.909 0.00 0.00 36.21 2.40
86 87 3.988379 TGTGTTTCCTCAACTGCATTC 57.012 42.857 0.00 0.00 36.21 2.67
87 88 4.942761 ATTGTGTTTCCTCAACTGCATT 57.057 36.364 0.00 0.00 36.21 3.56
104 107 7.106239 TGTTTGGTTGTTTACATTCCAATTGT 58.894 30.769 15.54 0.00 38.74 2.71
105 108 7.254727 CCTGTTTGGTTGTTTACATTCCAATTG 60.255 37.037 15.54 0.00 38.74 2.32
106 109 6.765512 CCTGTTTGGTTGTTTACATTCCAATT 59.234 34.615 15.54 0.00 38.74 2.32
108 111 5.395768 CCCTGTTTGGTTGTTTACATTCCAA 60.396 40.000 12.67 12.67 37.93 3.53
109 112 4.100189 CCCTGTTTGGTTGTTTACATTCCA 59.900 41.667 4.09 4.09 0.00 3.53
110 113 4.342665 TCCCTGTTTGGTTGTTTACATTCC 59.657 41.667 0.00 0.00 0.00 3.01
111 114 5.523438 TCCCTGTTTGGTTGTTTACATTC 57.477 39.130 0.00 0.00 0.00 2.67
112 115 5.941555 TTCCCTGTTTGGTTGTTTACATT 57.058 34.783 0.00 0.00 0.00 2.71
113 116 5.741673 GCATTCCCTGTTTGGTTGTTTACAT 60.742 40.000 0.00 0.00 0.00 2.29
114 117 4.442192 GCATTCCCTGTTTGGTTGTTTACA 60.442 41.667 0.00 0.00 0.00 2.41
115 118 4.055360 GCATTCCCTGTTTGGTTGTTTAC 58.945 43.478 0.00 0.00 0.00 2.01
116 119 3.070302 GGCATTCCCTGTTTGGTTGTTTA 59.930 43.478 0.00 0.00 0.00 2.01
117 120 2.158827 GGCATTCCCTGTTTGGTTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
120 123 1.047002 TGGCATTCCCTGTTTGGTTG 58.953 50.000 0.00 0.00 0.00 3.77
123 126 2.568509 AGATTTGGCATTCCCTGTTTGG 59.431 45.455 0.00 0.00 0.00 3.28
135 138 1.071542 TGAGGTTCGTCAGATTTGGCA 59.928 47.619 0.00 0.00 0.00 4.92
136 139 1.808411 TGAGGTTCGTCAGATTTGGC 58.192 50.000 0.00 0.00 0.00 4.52
139 142 3.485463 TGGTTGAGGTTCGTCAGATTT 57.515 42.857 0.00 0.00 0.00 2.17
140 143 3.181454 ACTTGGTTGAGGTTCGTCAGATT 60.181 43.478 0.00 0.00 0.00 2.40
143 146 2.240493 ACTTGGTTGAGGTTCGTCAG 57.760 50.000 0.00 0.00 0.00 3.51
147 150 3.659786 TGTGATACTTGGTTGAGGTTCG 58.340 45.455 0.00 0.00 0.00 3.95
178 181 4.192317 GCGACCAAATTCTGAGGAATAGT 58.808 43.478 0.00 0.00 40.86 2.12
209 212 8.602328 TGCTGATTTTGTTCTAATTTTGTTGTG 58.398 29.630 0.00 0.00 0.00 3.33
210 213 8.715191 TGCTGATTTTGTTCTAATTTTGTTGT 57.285 26.923 0.00 0.00 0.00 3.32
212 215 9.986833 GTTTGCTGATTTTGTTCTAATTTTGTT 57.013 25.926 0.00 0.00 0.00 2.83
213 216 8.611757 GGTTTGCTGATTTTGTTCTAATTTTGT 58.388 29.630 0.00 0.00 0.00 2.83
214 217 8.069574 GGGTTTGCTGATTTTGTTCTAATTTTG 58.930 33.333 0.00 0.00 0.00 2.44
215 218 7.992608 AGGGTTTGCTGATTTTGTTCTAATTTT 59.007 29.630 0.00 0.00 0.00 1.82
216 219 7.508687 AGGGTTTGCTGATTTTGTTCTAATTT 58.491 30.769 0.00 0.00 0.00 1.82
217 220 7.066307 AGGGTTTGCTGATTTTGTTCTAATT 57.934 32.000 0.00 0.00 0.00 1.40
218 221 6.670695 AGGGTTTGCTGATTTTGTTCTAAT 57.329 33.333 0.00 0.00 0.00 1.73
220 223 6.775629 AGTTAGGGTTTGCTGATTTTGTTCTA 59.224 34.615 0.00 0.00 0.00 2.10
221 224 5.598417 AGTTAGGGTTTGCTGATTTTGTTCT 59.402 36.000 0.00 0.00 0.00 3.01
222 225 5.842907 AGTTAGGGTTTGCTGATTTTGTTC 58.157 37.500 0.00 0.00 0.00 3.18
249 252 2.421619 CTTCCTGCAAGTCTCTTGGAC 58.578 52.381 10.76 0.00 44.80 4.02
252 255 1.612726 CCCCTTCCTGCAAGTCTCTTG 60.613 57.143 5.28 5.28 0.00 3.02
253 256 0.695347 CCCCTTCCTGCAAGTCTCTT 59.305 55.000 0.00 0.00 0.00 2.85
273 276 5.413309 TCTGGTTCTTCTTCATCTTCTCC 57.587 43.478 0.00 0.00 0.00 3.71
319 322 2.372172 AGTCACCATTCCTTCCTCGTTT 59.628 45.455 0.00 0.00 0.00 3.60
335 338 7.493367 AGTTATGAAGAATAGCCTGTAGTCAC 58.507 38.462 0.00 0.00 0.00 3.67
336 339 7.661536 AGTTATGAAGAATAGCCTGTAGTCA 57.338 36.000 0.00 0.00 0.00 3.41
337 340 7.982354 ACAAGTTATGAAGAATAGCCTGTAGTC 59.018 37.037 0.00 0.00 28.14 2.59
338 341 7.852263 ACAAGTTATGAAGAATAGCCTGTAGT 58.148 34.615 0.00 0.00 28.14 2.73
342 345 6.749118 GCAAACAAGTTATGAAGAATAGCCTG 59.251 38.462 0.00 0.00 0.00 4.85
343 346 6.127619 GGCAAACAAGTTATGAAGAATAGCCT 60.128 38.462 0.00 0.00 32.49 4.58
352 355 5.843673 TTGTCTGGCAAACAAGTTATGAA 57.156 34.783 1.44 0.00 33.53 2.57
355 358 5.536161 AGACATTGTCTGGCAAACAAGTTAT 59.464 36.000 18.35 0.00 41.76 1.89
356 359 4.887071 AGACATTGTCTGGCAAACAAGTTA 59.113 37.500 18.35 0.00 41.76 2.24
370 373 6.446318 TCTAATTTTGTTGGCAGACATTGTC 58.554 36.000 8.82 8.82 0.00 3.18
374 377 6.403866 TGTTCTAATTTTGTTGGCAGACAT 57.596 33.333 3.89 0.00 0.00 3.06
375 378 5.843673 TGTTCTAATTTTGTTGGCAGACA 57.156 34.783 0.00 0.00 0.00 3.41
376 379 7.437862 TGATTTGTTCTAATTTTGTTGGCAGAC 59.562 33.333 0.00 0.00 0.00 3.51
381 384 7.712264 TGCTGATTTGTTCTAATTTTGTTGG 57.288 32.000 0.00 0.00 0.00 3.77
394 397 5.243060 GGTAGTTAGGGTTTGCTGATTTGTT 59.757 40.000 0.00 0.00 0.00 2.83
403 406 3.602483 TCGAATGGTAGTTAGGGTTTGC 58.398 45.455 0.00 0.00 0.00 3.68
414 417 3.510388 TGCAAGTCTCTCGAATGGTAG 57.490 47.619 0.00 0.00 0.00 3.18
421 424 1.205655 CCCTTCATGCAAGTCTCTCGA 59.794 52.381 0.00 0.00 0.00 4.04
422 425 1.649664 CCCTTCATGCAAGTCTCTCG 58.350 55.000 0.00 0.00 0.00 4.04
428 431 1.067295 TCTCACCCCTTCATGCAAGT 58.933 50.000 0.00 0.00 0.00 3.16
435 438 3.520696 TCTTCATCTTCTCACCCCTTCA 58.479 45.455 0.00 0.00 0.00 3.02
458 467 3.127352 GAGGTGGTCGGCGCTCTAG 62.127 68.421 7.64 0.00 0.00 2.43
459 468 3.138798 GAGGTGGTCGGCGCTCTA 61.139 66.667 7.64 0.00 0.00 2.43
461 470 4.373116 TTGAGGTGGTCGGCGCTC 62.373 66.667 7.64 2.91 0.00 5.03
462 471 4.379243 CTTGAGGTGGTCGGCGCT 62.379 66.667 7.64 0.00 0.00 5.92
468 480 0.898789 TCGTCTCCCTTGAGGTGGTC 60.899 60.000 0.00 0.00 39.23 4.02
477 489 1.562783 CTTCCTCCTTCGTCTCCCTT 58.437 55.000 0.00 0.00 0.00 3.95
480 492 1.558233 TTCCTTCCTCCTTCGTCTCC 58.442 55.000 0.00 0.00 0.00 3.71
481 493 2.761208 TCATTCCTTCCTCCTTCGTCTC 59.239 50.000 0.00 0.00 0.00 3.36
482 494 2.498078 GTCATTCCTTCCTCCTTCGTCT 59.502 50.000 0.00 0.00 0.00 4.18
483 495 2.735762 CGTCATTCCTTCCTCCTTCGTC 60.736 54.545 0.00 0.00 0.00 4.20
486 498 2.735762 CGTCGTCATTCCTTCCTCCTTC 60.736 54.545 0.00 0.00 0.00 3.46
496 508 3.250744 TCTTTGTCATCGTCGTCATTCC 58.749 45.455 0.00 0.00 0.00 3.01
505 517 6.875726 TCTTCATCTTGATTCTTTGTCATCGT 59.124 34.615 0.00 0.00 0.00 3.73
507 519 8.037382 TGTCTTCATCTTGATTCTTTGTCATC 57.963 34.615 0.00 0.00 0.00 2.92
508 520 7.991084 TGTCTTCATCTTGATTCTTTGTCAT 57.009 32.000 0.00 0.00 0.00 3.06
509 521 7.991084 ATGTCTTCATCTTGATTCTTTGTCA 57.009 32.000 0.00 0.00 0.00 3.58
515 527 7.911130 TCCTCTATGTCTTCATCTTGATTCT 57.089 36.000 0.00 0.00 35.70 2.40
521 533 6.775142 TCTCGATTCCTCTATGTCTTCATCTT 59.225 38.462 0.00 0.00 35.70 2.40
543 555 1.334243 CCTCGTGTAACCGATCCTCTC 59.666 57.143 0.00 0.00 36.08 3.20
550 562 3.517602 CATTCATTCCTCGTGTAACCGA 58.482 45.455 0.00 0.00 35.22 4.69
551 563 2.607635 CCATTCATTCCTCGTGTAACCG 59.392 50.000 0.00 0.00 0.00 4.44
555 567 2.158957 GCTCCCATTCATTCCTCGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
556 568 1.407437 GCTCCCATTCATTCCTCGTGT 60.407 52.381 0.00 0.00 0.00 4.49
557 569 1.303309 GCTCCCATTCATTCCTCGTG 58.697 55.000 0.00 0.00 0.00 4.35
558 570 0.179073 CGCTCCCATTCATTCCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
559 571 0.104855 TCGCTCCCATTCATTCCTCG 59.895 55.000 0.00 0.00 0.00 4.63
561 573 0.471617 CCTCGCTCCCATTCATTCCT 59.528 55.000 0.00 0.00 0.00 3.36
562 574 0.469917 TCCTCGCTCCCATTCATTCC 59.530 55.000 0.00 0.00 0.00 3.01
566 578 2.577606 TTTTTCCTCGCTCCCATTCA 57.422 45.000 0.00 0.00 0.00 2.57
570 582 2.577606 TTCATTTTTCCTCGCTCCCA 57.422 45.000 0.00 0.00 0.00 4.37
572 584 2.164219 TGCATTCATTTTTCCTCGCTCC 59.836 45.455 0.00 0.00 0.00 4.70
577 589 6.404074 CCTGACTAGTGCATTCATTTTTCCTC 60.404 42.308 0.00 0.00 0.00 3.71
580 592 6.259550 ACCTGACTAGTGCATTCATTTTTC 57.740 37.500 0.00 0.00 0.00 2.29
588 600 4.943705 CCATTGTAACCTGACTAGTGCATT 59.056 41.667 0.00 0.00 0.00 3.56
589 601 4.225042 TCCATTGTAACCTGACTAGTGCAT 59.775 41.667 0.00 0.00 0.00 3.96
600 612 2.635915 TCAACCGACTCCATTGTAACCT 59.364 45.455 0.00 0.00 0.00 3.50
603 615 4.963373 TCTTTCAACCGACTCCATTGTAA 58.037 39.130 0.00 0.00 0.00 2.41
608 620 2.257207 TCCTCTTTCAACCGACTCCAT 58.743 47.619 0.00 0.00 0.00 3.41
619 631 8.752005 TTTTTCTCTTCTTCATTCCTCTTTCA 57.248 30.769 0.00 0.00 0.00 2.69
671 683 1.077716 GCACACCCTTCGCCCTAAT 60.078 57.895 0.00 0.00 0.00 1.73
689 701 3.726517 CAAACTGTCAGGGCGCCG 61.727 66.667 22.54 7.85 0.00 6.46
690 702 2.281484 TCAAACTGTCAGGGCGCC 60.281 61.111 21.18 21.18 0.00 6.53
691 703 2.946762 GTCAAACTGTCAGGGCGC 59.053 61.111 0.00 0.00 0.00 6.53
692 704 2.954753 GCGTCAAACTGTCAGGGCG 61.955 63.158 4.53 0.93 0.00 6.13
726 739 3.713003 AGGATGATCTTTGGGAAAACCC 58.287 45.455 0.00 0.00 39.07 4.11
747 760 6.878923 CCACTTGGACATTCTGTATTCTGTAA 59.121 38.462 0.00 0.00 37.39 2.41
748 761 6.406370 CCACTTGGACATTCTGTATTCTGTA 58.594 40.000 0.00 0.00 37.39 2.74
749 762 5.248640 CCACTTGGACATTCTGTATTCTGT 58.751 41.667 0.00 0.00 37.39 3.41
750 763 4.637534 CCCACTTGGACATTCTGTATTCTG 59.362 45.833 0.00 0.00 37.39 3.02
751 764 4.848357 CCCACTTGGACATTCTGTATTCT 58.152 43.478 0.00 0.00 37.39 2.40
752 765 3.378427 GCCCACTTGGACATTCTGTATTC 59.622 47.826 0.00 0.00 37.39 1.75
753 766 3.010584 AGCCCACTTGGACATTCTGTATT 59.989 43.478 0.00 0.00 37.39 1.89
754 767 2.578021 AGCCCACTTGGACATTCTGTAT 59.422 45.455 0.00 0.00 37.39 2.29
796 809 0.914644 TCCAGCCCATTTCCTCTCAG 59.085 55.000 0.00 0.00 0.00 3.35
866 2003 0.460284 ATGCGAGCTCCTAAACGTGG 60.460 55.000 8.47 0.00 0.00 4.94
883 2033 3.019933 GGCTACTCTAGGCTTTCGATG 57.980 52.381 0.00 0.00 46.78 3.84
899 2049 3.009115 GTGGAGTGGGCTGGGCTA 61.009 66.667 0.00 0.00 0.00 3.93
1017 2170 3.522731 CTGAGGACGAGGGAGGCG 61.523 72.222 0.00 0.00 0.00 5.52
1236 2389 4.117661 GGCGAGACGGCGTTCTCT 62.118 66.667 25.55 16.00 43.33 3.10
1570 2723 2.513897 GAACCCTTCGGCATCGGG 60.514 66.667 0.00 0.00 43.79 5.14
1761 2914 3.923864 TCAAGCACGGAGGCGTGT 61.924 61.111 0.00 0.00 42.68 4.49
1824 2977 3.573772 CTTGCCCAGCGTCGACTCA 62.574 63.158 14.70 0.00 0.00 3.41
1998 3151 1.420641 CGATCTTGATGTTCGCCGCA 61.421 55.000 0.00 0.00 32.23 5.69
2091 3244 4.127907 TCGATATGAACACTAGAGCTCGT 58.872 43.478 8.37 0.00 0.00 4.18
2269 3422 7.092137 TCATCAAAGATATTGCCTTGTCAAG 57.908 36.000 5.53 5.53 0.00 3.02
2448 3601 2.260869 CCCATAATGCTTCGGCCCG 61.261 63.158 0.00 0.00 40.91 6.13
2572 3725 1.500474 TCTGAATGGTGAGGCCCTAG 58.500 55.000 0.00 0.00 36.04 3.02
2616 3769 3.366273 CCATCGTATTGTATGCATTGGCC 60.366 47.826 3.54 0.00 40.13 5.36
2631 3784 7.230108 CAGAAATAGTAGTACCTTCCCATCGTA 59.770 40.741 0.00 0.00 0.00 3.43
2695 3848 6.865205 CAGGCTAAAAGAAAGAAATCAGGTTG 59.135 38.462 0.00 0.00 0.00 3.77
2699 3852 5.047802 TGCCAGGCTAAAAGAAAGAAATCAG 60.048 40.000 14.15 0.00 0.00 2.90
2801 3954 8.718102 AGTAGCATGTAACATGTAAACTTAGG 57.282 34.615 0.00 0.00 0.00 2.69
2815 3968 7.307493 CATTTCTTGCAGTAGTAGCATGTAA 57.693 36.000 0.00 0.00 42.33 2.41
3276 4430 6.640518 TGATCTCAGTTTGTACAGTATTCCC 58.359 40.000 0.00 0.00 0.00 3.97
3289 4484 5.684704 TCTTTGTCAGGTTGATCTCAGTTT 58.315 37.500 0.00 0.00 0.00 2.66
3373 4568 0.179134 GTTGGTCCGTCCTGATCTCG 60.179 60.000 0.00 0.00 37.07 4.04
3392 4587 0.879765 AGTCGTCCTCGGTTGTAGTG 59.120 55.000 0.00 0.00 37.69 2.74
3393 4588 1.163554 GAGTCGTCCTCGGTTGTAGT 58.836 55.000 0.00 0.00 37.69 2.73
3426 4621 6.090898 CACCTTTGGAAGAAGTGTAATCGTAG 59.909 42.308 0.00 0.00 0.00 3.51
3434 4629 1.064017 TGGCACCTTTGGAAGAAGTGT 60.064 47.619 0.00 0.00 0.00 3.55
3468 4663 1.442017 GACATCACGTTTTGGCGGC 60.442 57.895 0.00 0.00 35.98 6.53
3506 4701 2.552373 GGTGGTGAAAATCTTCCGGAGT 60.552 50.000 3.34 0.00 0.00 3.85
3510 4705 2.884639 AGTTGGTGGTGAAAATCTTCCG 59.115 45.455 0.00 0.00 0.00 4.30
3600 4795 3.708631 TCATTGCCCTTTTGTGAAGGAAA 59.291 39.130 6.39 1.77 39.81 3.13
3630 4825 4.692625 GCAGCTTTATCACTGTTGAGAGAA 59.307 41.667 0.00 0.00 34.35 2.87
3632 4827 3.373439 GGCAGCTTTATCACTGTTGAGAG 59.627 47.826 0.00 0.00 34.35 3.20
3633 4828 3.338249 GGCAGCTTTATCACTGTTGAGA 58.662 45.455 0.00 0.00 34.35 3.27
3634 4829 2.094894 CGGCAGCTTTATCACTGTTGAG 59.905 50.000 0.00 0.00 34.35 3.02
3635 4830 2.076100 CGGCAGCTTTATCACTGTTGA 58.924 47.619 0.00 0.00 36.26 3.18
3636 4831 2.076100 TCGGCAGCTTTATCACTGTTG 58.924 47.619 0.00 0.00 36.26 3.33
3637 4832 2.472695 TCGGCAGCTTTATCACTGTT 57.527 45.000 0.00 0.00 36.26 3.16
3638 4833 2.698855 ATCGGCAGCTTTATCACTGT 57.301 45.000 0.00 0.00 36.26 3.55
3639 4834 2.938451 TGAATCGGCAGCTTTATCACTG 59.062 45.455 0.00 0.00 36.96 3.66
3640 4835 3.266510 TGAATCGGCAGCTTTATCACT 57.733 42.857 0.00 0.00 0.00 3.41
3641 4836 4.035558 TGATTGAATCGGCAGCTTTATCAC 59.964 41.667 0.18 0.00 0.00 3.06
3642 4837 4.198530 TGATTGAATCGGCAGCTTTATCA 58.801 39.130 0.18 0.00 0.00 2.15
3643 4838 4.818534 TGATTGAATCGGCAGCTTTATC 57.181 40.909 0.18 0.00 0.00 1.75
3644 4839 5.068636 AGATGATTGAATCGGCAGCTTTAT 58.931 37.500 0.18 0.00 0.00 1.40
3645 4840 4.454678 AGATGATTGAATCGGCAGCTTTA 58.545 39.130 0.18 0.00 0.00 1.85
3646 4841 3.285484 AGATGATTGAATCGGCAGCTTT 58.715 40.909 0.18 0.00 0.00 3.51
3647 4842 2.928334 AGATGATTGAATCGGCAGCTT 58.072 42.857 0.18 0.00 0.00 3.74
3665 4860 1.349026 CTGTGAGGGCTGAAGGAAAGA 59.651 52.381 0.00 0.00 0.00 2.52
3725 4920 6.238484 GGGTCAGCATATAGTGTTCATTTCAC 60.238 42.308 0.00 0.00 36.22 3.18
3762 4957 0.249073 GAAGCTGAAGCCTATCGCGA 60.249 55.000 13.09 13.09 44.76 5.87
3763 4958 1.218230 GGAAGCTGAAGCCTATCGCG 61.218 60.000 0.00 0.00 44.76 5.87
3767 4962 3.110705 TCTCTTGGAAGCTGAAGCCTAT 58.889 45.455 0.00 0.00 43.38 2.57
3771 4966 4.135747 ACTATCTCTTGGAAGCTGAAGC 57.864 45.455 0.00 0.00 42.49 3.86
3795 4994 6.775708 ACTATTCAGTTAGTTAACAGCCCAA 58.224 36.000 8.61 0.00 38.62 4.12
3817 5016 3.748645 ACAGTCCAGACTCCAGATACT 57.251 47.619 0.00 0.00 40.20 2.12
3821 5020 3.845860 AGTTAACAGTCCAGACTCCAGA 58.154 45.455 8.61 0.00 40.20 3.86
3822 5021 5.244178 AGTTAGTTAACAGTCCAGACTCCAG 59.756 44.000 8.61 0.00 40.20 3.86
3823 5022 5.010719 CAGTTAGTTAACAGTCCAGACTCCA 59.989 44.000 8.61 0.00 40.20 3.86
3824 5023 5.243283 TCAGTTAGTTAACAGTCCAGACTCC 59.757 44.000 8.61 0.00 40.20 3.85
3825 5024 6.328641 TCAGTTAGTTAACAGTCCAGACTC 57.671 41.667 8.61 0.00 40.20 3.36
3826 5025 6.726490 TTCAGTTAGTTAACAGTCCAGACT 57.274 37.500 8.61 0.00 43.61 3.24
3827 5026 6.929606 ACATTCAGTTAGTTAACAGTCCAGAC 59.070 38.462 8.61 0.00 38.62 3.51
3833 5032 6.765989 TGCAGAACATTCAGTTAGTTAACAGT 59.234 34.615 8.61 0.00 41.51 3.55
3838 5037 5.304778 TGCTGCAGAACATTCAGTTAGTTA 58.695 37.500 20.43 0.00 41.51 2.24
3884 5083 2.979676 CAGCCGTGCTCTTGCCAA 60.980 61.111 0.00 0.00 36.40 4.52
3916 5115 1.301401 CGCAGGGTTCGAACTTGGA 60.301 57.895 26.32 0.00 0.00 3.53
3933 5132 0.656205 CGCGAAATAAATTCCGCCCG 60.656 55.000 0.00 0.00 35.53 6.13
3938 5137 8.402326 AGTTTTAAATCCGCGAAATAAATTCC 57.598 30.769 8.23 0.30 34.34 3.01
3951 5150 5.008217 TGTGAGACACCAAGTTTTAAATCCG 59.992 40.000 0.00 0.00 32.73 4.18
3979 5178 3.624410 GCCCCGCGGTATTATTATTAAGG 59.376 47.826 26.12 14.03 0.00 2.69
4028 5232 1.921982 TTTGGGCTATGCTGCAGAAA 58.078 45.000 20.43 4.69 34.04 2.52
4088 5292 3.269178 GAAGTTGATGAGAGGCCTTCAG 58.731 50.000 6.77 0.00 0.00 3.02
4104 5308 2.144450 GGGGATTATGGAGGGGAAGTT 58.856 52.381 0.00 0.00 0.00 2.66
4164 5368 2.892852 CTCAAAGATTTTGCCCTGACCA 59.107 45.455 0.00 0.00 0.00 4.02
4166 5370 3.366781 GCTCTCAAAGATTTTGCCCTGAC 60.367 47.826 0.00 0.00 0.00 3.51
4206 5410 5.987347 CAGATTGGTGCACTCAAAGATTTTT 59.013 36.000 17.98 2.67 0.00 1.94
4207 5411 5.069516 ACAGATTGGTGCACTCAAAGATTTT 59.930 36.000 17.98 3.36 0.00 1.82
4208 5412 4.586001 ACAGATTGGTGCACTCAAAGATTT 59.414 37.500 17.98 4.04 0.00 2.17
4209 5413 4.147321 ACAGATTGGTGCACTCAAAGATT 58.853 39.130 17.98 4.40 0.00 2.40
4241 5447 1.475682 GCAGGCTTCATTCTGGAAAGG 59.524 52.381 0.00 0.00 0.00 3.11
4273 5479 3.749226 TGTGTGCACCAACATTGAGATA 58.251 40.909 15.69 0.00 31.49 1.98
4356 5563 4.061627 ATGTCTGACATGGTTGGGACAAC 61.062 47.826 21.71 3.63 40.01 3.32
4377 5595 6.715264 CCTAGATTTCTTTAACCGGGCATTAT 59.285 38.462 6.32 0.00 0.00 1.28
4378 5596 6.059484 CCTAGATTTCTTTAACCGGGCATTA 58.941 40.000 6.32 0.00 0.00 1.90
4388 5606 7.231925 GGGTGTCCAAAACCTAGATTTCTTTAA 59.768 37.037 0.00 0.00 37.85 1.52
4407 5625 1.990160 TTGTGGTGGTCTGGGTGTCC 61.990 60.000 0.00 0.00 0.00 4.02
4416 5634 7.174253 TGTGTTCTCTTAAATATTGTGGTGGTC 59.826 37.037 0.00 0.00 0.00 4.02
4469 5687 4.409901 TGTGGATGAGAATGCTAATGGAGA 59.590 41.667 0.00 0.00 0.00 3.71
4490 5708 3.053619 AGGAGAAGTTTCCTTTGGTGTGT 60.054 43.478 1.95 0.00 45.35 3.72
4569 5792 0.618458 TTTCTGCCCTCACCGCTTAT 59.382 50.000 0.00 0.00 0.00 1.73
4574 5798 2.032528 TGCTTTCTGCCCTCACCG 59.967 61.111 0.00 0.00 42.00 4.94
4610 5834 2.962421 CTCATGTCTAGGGAGGAACCTC 59.038 54.545 11.97 11.97 42.09 3.85
4757 5991 4.099573 GTGATATCCTCTCGGTCTTTGGAA 59.900 45.833 0.00 0.00 0.00 3.53
4783 6017 5.841957 ATTAGCTGACATGGTTTGGATTC 57.158 39.130 0.00 0.00 0.00 2.52
4929 6193 2.225727 GCTAAAGAGGAAACAACACCCG 59.774 50.000 0.00 0.00 0.00 5.28
5050 6322 0.672342 CCAGGCCATAGCTGCATTTC 59.328 55.000 5.01 0.00 39.73 2.17
5064 6340 0.255890 TTGGAACTCCATAGCCAGGC 59.744 55.000 1.84 1.84 46.97 4.85
5248 6528 2.125106 GCGACTTTGGCCGGATCT 60.125 61.111 5.05 0.00 0.00 2.75
5283 6642 5.921408 AGAGAAAAGAGTACATGACGTGAAC 59.079 40.000 0.00 0.00 0.00 3.18
5306 6665 6.798482 TGCATAGTGGCATCAAAATAGAAAG 58.202 36.000 0.00 0.00 39.25 2.62
5495 6890 9.908747 TTGGACTCGGATAATTTTTATCCTTTA 57.091 29.630 19.11 8.01 40.94 1.85
5496 6891 8.817092 TTGGACTCGGATAATTTTTATCCTTT 57.183 30.769 19.11 7.44 40.94 3.11
5498 6893 7.802117 TCTTGGACTCGGATAATTTTTATCCT 58.198 34.615 19.11 5.76 40.94 3.24
5499 6894 8.446599 TTCTTGGACTCGGATAATTTTTATCC 57.553 34.615 13.88 13.88 39.98 2.59
5503 6898 8.348285 TGATTTCTTGGACTCGGATAATTTTT 57.652 30.769 0.00 0.00 0.00 1.94
5508 6985 4.868171 CGTTGATTTCTTGGACTCGGATAA 59.132 41.667 0.00 0.00 0.00 1.75
5538 7020 0.901580 CAGGGGCAAAATGGCTGTCT 60.902 55.000 3.86 0.00 43.20 3.41
5559 7058 3.706055 CCCGTTACATCATCAGGGG 57.294 57.895 0.00 0.00 35.36 4.79
5566 7066 2.498481 AGATTTCGTCCCCGTTACATCA 59.502 45.455 0.00 0.00 35.01 3.07
5579 7080 3.818773 ACCACCAAATTTCGAGATTTCGT 59.181 39.130 10.74 8.23 46.72 3.85
5583 7084 5.529581 AAACACCACCAAATTTCGAGATT 57.470 34.783 0.00 0.00 0.00 2.40
5591 7092 7.426606 AACCTTACTAAAACACCACCAAATT 57.573 32.000 0.00 0.00 0.00 1.82
5597 7098 6.037726 CACCAAAACCTTACTAAAACACCAC 58.962 40.000 0.00 0.00 0.00 4.16
5666 7167 0.402121 AACTGGAGTTCTGGCCCTTC 59.598 55.000 0.00 0.00 31.64 3.46
5695 7201 3.124297 GCGAAAGAAGGACATGAAGTGAG 59.876 47.826 0.00 0.00 0.00 3.51
5707 7213 3.594603 TCAGAGGTAAGCGAAAGAAGG 57.405 47.619 0.00 0.00 0.00 3.46
5715 7221 5.613358 AATTGAAACTTCAGAGGTAAGCG 57.387 39.130 0.00 0.00 38.61 4.68
5720 7226 5.893824 ACCAAGAAATTGAAACTTCAGAGGT 59.106 36.000 0.00 0.00 38.61 3.85
5735 7241 4.097892 GTGGAACAACTGTGACCAAGAAAT 59.902 41.667 9.57 0.00 44.16 2.17
5860 7371 8.220755 TGCCTGATTTACTGTAATATTTGGAC 57.779 34.615 0.37 0.00 0.00 4.02
5959 7514 2.128035 GTGTCACAGGTTCAGTTCTCG 58.872 52.381 0.00 0.00 0.00 4.04
5993 12004 3.018856 TGCCGCTTGAAAGATTCATGAT 58.981 40.909 0.00 0.00 39.84 2.45
6019 12030 3.131400 ACTCGGCTTAGGCAAAACAAAAA 59.869 39.130 6.60 0.00 40.87 1.94
6038 12079 8.034058 AGTGATTTTAGTTAGTTGCATCACTC 57.966 34.615 6.15 0.00 43.73 3.51
6110 12151 2.825836 GGCACTCGCTTCCATGGG 60.826 66.667 13.02 0.00 38.60 4.00
6143 12184 3.793144 CAGCAAGAAGACGGCGCC 61.793 66.667 19.07 19.07 0.00 6.53
6169 12210 1.067495 CCGGAGAAGAGGAAGACACAC 60.067 57.143 0.00 0.00 0.00 3.82
6248 12289 1.231958 CCGGCAAACAAGCTCCGTTA 61.232 55.000 8.30 0.00 40.23 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.