Multiple sequence alignment - TraesCS6D01G381900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G381900 chr6D 100.000 2564 0 0 1 2564 462032262 462034825 0.000000e+00 4735
1 TraesCS6D01G381900 chr6D 90.306 392 32 5 1 389 462076372 462076760 2.280000e-140 508
2 TraesCS6D01G381900 chr6D 92.857 224 8 1 2340 2563 229228806 229228591 4.120000e-83 318
3 TraesCS6D01G381900 chr6D 91.200 125 4 2 490 607 462076756 462076880 2.040000e-36 163
4 TraesCS6D01G381900 chr3B 94.720 966 35 4 1601 2563 403113454 403114406 0.000000e+00 1487
5 TraesCS6D01G381900 chr3B 92.372 957 50 8 1605 2560 197502 198436 0.000000e+00 1341
6 TraesCS6D01G381900 chr3B 87.793 598 63 2 1968 2563 264006938 264006349 0.000000e+00 691
7 TraesCS6D01G381900 chr3B 92.515 334 14 4 623 956 403113149 403113471 3.860000e-128 468
8 TraesCS6D01G381900 chr3B 89.124 331 31 3 626 956 197190 197515 8.540000e-110 407
9 TraesCS6D01G381900 chr1B 92.739 964 48 6 1601 2563 540343289 540344231 0.000000e+00 1373
10 TraesCS6D01G381900 chr1B 89.164 323 29 5 635 956 540342989 540343306 5.140000e-107 398
11 TraesCS6D01G381900 chr1B 94.872 117 6 0 382 498 661509425 661509309 1.570000e-42 183
12 TraesCS6D01G381900 chrUn 92.067 958 52 12 1605 2560 36424689 36425624 0.000000e+00 1327
13 TraesCS6D01G381900 chrUn 100.000 640 0 0 957 1596 319326258 319326897 0.000000e+00 1182
14 TraesCS6D01G381900 chrUn 93.624 643 39 1 1605 2247 35473397 35472757 0.000000e+00 959
15 TraesCS6D01G381900 chrUn 89.939 328 28 2 626 953 36424377 36424699 3.950000e-113 418
16 TraesCS6D01G381900 chrUn 89.124 331 29 6 626 956 35473707 35473384 3.070000e-109 405
17 TraesCS6D01G381900 chr7B 91.598 964 59 9 1601 2563 271290859 271289917 0.000000e+00 1312
18 TraesCS6D01G381900 chr7B 99.846 648 0 1 957 1603 586051513 586052160 0.000000e+00 1190
19 TraesCS6D01G381900 chr7B 87.037 594 60 5 1968 2559 122697147 122696569 0.000000e+00 654
20 TraesCS6D01G381900 chr7B 88.253 332 32 6 626 956 271291167 271290842 8.600000e-105 390
21 TraesCS6D01G381900 chr5A 99.845 645 1 0 957 1601 473243656 473243012 0.000000e+00 1186
22 TraesCS6D01G381900 chr5A 98.752 641 7 1 957 1596 685966882 685967522 0.000000e+00 1138
23 TraesCS6D01G381900 chr5A 87.748 604 61 5 1968 2563 544240834 544240236 0.000000e+00 693
24 TraesCS6D01G381900 chr5A 85.329 334 40 8 626 956 544241441 544241114 1.140000e-88 337
25 TraesCS6D01G381900 chr4A 99.688 642 2 0 957 1598 475389963 475390604 0.000000e+00 1175
26 TraesCS6D01G381900 chr4A 90.221 317 25 6 622 937 681110899 681110588 2.370000e-110 409
27 TraesCS6D01G381900 chr4A 87.931 116 5 2 2448 2563 681110328 681110222 7.450000e-26 128
28 TraesCS6D01G381900 chr2D 93.284 804 41 4 1605 2407 610170049 610169258 0.000000e+00 1173
29 TraesCS6D01G381900 chr2D 92.857 224 8 1 2340 2563 566193255 566193040 4.120000e-83 318
30 TraesCS6D01G381900 chr2D 90.000 170 5 2 2398 2563 610168955 610168794 2.590000e-50 209
31 TraesCS6D01G381900 chr1A 99.224 644 4 1 957 1600 457822616 457821974 0.000000e+00 1160
32 TraesCS6D01G381900 chr6A 99.214 636 5 0 957 1592 434547525 434548160 0.000000e+00 1147
33 TraesCS6D01G381900 chr6A 96.460 113 3 1 387 498 108870063 108869951 4.360000e-43 185
34 TraesCS6D01G381900 chr4B 86.474 658 70 9 1912 2563 651083199 651082555 0.000000e+00 704
35 TraesCS6D01G381900 chr4B 91.406 128 8 3 384 511 650660021 650659897 3.390000e-39 172
36 TraesCS6D01G381900 chr5B 84.929 637 95 1 959 1595 593661671 593662306 0.000000e+00 643
37 TraesCS6D01G381900 chr5B 94.828 116 6 0 383 498 511839792 511839677 5.640000e-42 182
38 TraesCS6D01G381900 chr5D 84.796 638 96 1 959 1596 169974699 169975335 7.740000e-180 640
39 TraesCS6D01G381900 chr1D 93.233 399 25 1 1601 1997 62923371 62923769 1.020000e-163 586
40 TraesCS6D01G381900 chr1D 88.506 348 27 9 613 956 62923050 62923388 2.370000e-110 409
41 TraesCS6D01G381900 chr1D 86.986 146 16 3 380 525 81283606 81283748 7.340000e-36 161
42 TraesCS6D01G381900 chr3A 84.783 598 68 10 1968 2563 482474529 482473953 1.710000e-161 579
43 TraesCS6D01G381900 chr6B 91.858 393 21 5 1605 1996 151160575 151160193 2.900000e-149 538
44 TraesCS6D01G381900 chr6B 93.125 320 21 1 1836 2154 151160229 151159910 3.860000e-128 468
45 TraesCS6D01G381900 chr6B 89.329 328 31 4 629 956 151160885 151160562 2.370000e-110 409
46 TraesCS6D01G381900 chr6B 95.041 121 6 0 374 494 525565733 525565613 9.360000e-45 191
47 TraesCS6D01G381900 chr2B 85.211 284 32 5 2279 2562 779301319 779301046 1.500000e-72 283
48 TraesCS6D01G381900 chr2B 94.167 120 6 1 378 497 146781066 146781184 5.640000e-42 182
49 TraesCS6D01G381900 chr7A 94.068 118 6 1 381 498 381253917 381254033 7.290000e-41 178
50 TraesCS6D01G381900 chr7A 86.709 158 16 5 341 495 30135447 30135292 1.220000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G381900 chr6D 462032262 462034825 2563 False 4735.000000 4735 100.000000 1 2564 1 chr6D.!!$F1 2563
1 TraesCS6D01G381900 chr6D 462076372 462076880 508 False 335.500000 508 90.753000 1 607 2 chr6D.!!$F2 606
2 TraesCS6D01G381900 chr3B 403113149 403114406 1257 False 977.500000 1487 93.617500 623 2563 2 chr3B.!!$F2 1940
3 TraesCS6D01G381900 chr3B 197190 198436 1246 False 874.000000 1341 90.748000 626 2560 2 chr3B.!!$F1 1934
4 TraesCS6D01G381900 chr3B 264006349 264006938 589 True 691.000000 691 87.793000 1968 2563 1 chr3B.!!$R1 595
5 TraesCS6D01G381900 chr1B 540342989 540344231 1242 False 885.500000 1373 90.951500 635 2563 2 chr1B.!!$F1 1928
6 TraesCS6D01G381900 chrUn 319326258 319326897 639 False 1182.000000 1182 100.000000 957 1596 1 chrUn.!!$F1 639
7 TraesCS6D01G381900 chrUn 36424377 36425624 1247 False 872.500000 1327 91.003000 626 2560 2 chrUn.!!$F2 1934
8 TraesCS6D01G381900 chrUn 35472757 35473707 950 True 682.000000 959 91.374000 626 2247 2 chrUn.!!$R1 1621
9 TraesCS6D01G381900 chr7B 586051513 586052160 647 False 1190.000000 1190 99.846000 957 1603 1 chr7B.!!$F1 646
10 TraesCS6D01G381900 chr7B 271289917 271291167 1250 True 851.000000 1312 89.925500 626 2563 2 chr7B.!!$R2 1937
11 TraesCS6D01G381900 chr7B 122696569 122697147 578 True 654.000000 654 87.037000 1968 2559 1 chr7B.!!$R1 591
12 TraesCS6D01G381900 chr5A 473243012 473243656 644 True 1186.000000 1186 99.845000 957 1601 1 chr5A.!!$R1 644
13 TraesCS6D01G381900 chr5A 685966882 685967522 640 False 1138.000000 1138 98.752000 957 1596 1 chr5A.!!$F1 639
14 TraesCS6D01G381900 chr5A 544240236 544241441 1205 True 515.000000 693 86.538500 626 2563 2 chr5A.!!$R2 1937
15 TraesCS6D01G381900 chr4A 475389963 475390604 641 False 1175.000000 1175 99.688000 957 1598 1 chr4A.!!$F1 641
16 TraesCS6D01G381900 chr4A 681110222 681110899 677 True 268.500000 409 89.076000 622 2563 2 chr4A.!!$R1 1941
17 TraesCS6D01G381900 chr2D 610168794 610170049 1255 True 691.000000 1173 91.642000 1605 2563 2 chr2D.!!$R2 958
18 TraesCS6D01G381900 chr1A 457821974 457822616 642 True 1160.000000 1160 99.224000 957 1600 1 chr1A.!!$R1 643
19 TraesCS6D01G381900 chr6A 434547525 434548160 635 False 1147.000000 1147 99.214000 957 1592 1 chr6A.!!$F1 635
20 TraesCS6D01G381900 chr4B 651082555 651083199 644 True 704.000000 704 86.474000 1912 2563 1 chr4B.!!$R2 651
21 TraesCS6D01G381900 chr5B 593661671 593662306 635 False 643.000000 643 84.929000 959 1595 1 chr5B.!!$F1 636
22 TraesCS6D01G381900 chr5D 169974699 169975335 636 False 640.000000 640 84.796000 959 1596 1 chr5D.!!$F1 637
23 TraesCS6D01G381900 chr1D 62923050 62923769 719 False 497.500000 586 90.869500 613 1997 2 chr1D.!!$F2 1384
24 TraesCS6D01G381900 chr3A 482473953 482474529 576 True 579.000000 579 84.783000 1968 2563 1 chr3A.!!$R1 595
25 TraesCS6D01G381900 chr6B 151159910 151160885 975 True 471.666667 538 91.437333 629 2154 3 chr6B.!!$R2 1525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 282 0.036022 AACTTCCTCAGCCTCAGTGC 59.964 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2010 1.390123 CACAAGTACCAATGAGCGTCG 59.61 52.381 0.0 0.0 0.0 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 36 6.267817 ACATTAATTTCCTCATGCACAATCG 58.732 36.000 0.00 0.00 0.00 3.34
37 41 3.165058 TCCTCATGCACAATCGTACTC 57.835 47.619 0.00 0.00 0.00 2.59
64 68 1.205893 AGTGCGGAGAACTGATCTTCC 59.794 52.381 0.00 0.00 38.96 3.46
70 74 4.764172 CGGAGAACTGATCTTCCTGAAAT 58.236 43.478 0.00 0.00 38.96 2.17
96 100 2.165167 CTCAAGCTCCAATTCCTGCAA 58.835 47.619 0.00 0.00 0.00 4.08
117 121 3.898517 CAGCATGTCATATTCTGCCAG 57.101 47.619 0.00 0.00 35.21 4.85
177 181 1.207329 ACGCATCACCTCTACCCTTTC 59.793 52.381 0.00 0.00 0.00 2.62
178 182 1.473434 CGCATCACCTCTACCCTTTCC 60.473 57.143 0.00 0.00 0.00 3.13
179 183 1.473434 GCATCACCTCTACCCTTTCCG 60.473 57.143 0.00 0.00 0.00 4.30
180 184 1.139058 CATCACCTCTACCCTTTCCGG 59.861 57.143 0.00 0.00 0.00 5.14
181 185 1.221021 CACCTCTACCCTTTCCGGC 59.779 63.158 0.00 0.00 0.00 6.13
182 186 1.993948 ACCTCTACCCTTTCCGGCC 60.994 63.158 0.00 0.00 0.00 6.13
183 187 1.993391 CCTCTACCCTTTCCGGCCA 60.993 63.158 2.24 0.00 0.00 5.36
184 188 1.559065 CCTCTACCCTTTCCGGCCAA 61.559 60.000 2.24 0.00 0.00 4.52
185 189 0.546598 CTCTACCCTTTCCGGCCAAT 59.453 55.000 2.24 0.00 0.00 3.16
186 190 1.766496 CTCTACCCTTTCCGGCCAATA 59.234 52.381 2.24 0.00 0.00 1.90
187 191 2.372172 CTCTACCCTTTCCGGCCAATAT 59.628 50.000 2.24 0.00 0.00 1.28
188 192 2.105821 TCTACCCTTTCCGGCCAATATG 59.894 50.000 2.24 0.00 0.00 1.78
189 193 0.106217 ACCCTTTCCGGCCAATATGG 60.106 55.000 2.24 0.00 41.55 2.74
190 194 0.106217 CCCTTTCCGGCCAATATGGT 60.106 55.000 2.24 0.00 40.46 3.55
191 195 1.032014 CCTTTCCGGCCAATATGGTG 58.968 55.000 2.24 0.00 40.46 4.17
192 196 1.032014 CTTTCCGGCCAATATGGTGG 58.968 55.000 2.24 0.00 40.46 4.61
200 204 1.766494 CCAATATGGTGGCAGCTTGA 58.234 50.000 18.53 3.26 31.35 3.02
201 205 2.313317 CCAATATGGTGGCAGCTTGAT 58.687 47.619 18.53 5.75 31.35 2.57
202 206 3.489355 CCAATATGGTGGCAGCTTGATA 58.511 45.455 18.53 7.89 31.35 2.15
203 207 4.084287 CCAATATGGTGGCAGCTTGATAT 58.916 43.478 18.53 9.85 31.35 1.63
204 208 4.525487 CCAATATGGTGGCAGCTTGATATT 59.475 41.667 18.53 14.86 31.35 1.28
205 209 5.711506 CCAATATGGTGGCAGCTTGATATTA 59.288 40.000 18.53 0.00 31.35 0.98
206 210 6.379133 CCAATATGGTGGCAGCTTGATATTAT 59.621 38.462 18.53 2.78 31.35 1.28
207 211 7.557358 CCAATATGGTGGCAGCTTGATATTATA 59.443 37.037 18.53 5.01 31.35 0.98
208 212 8.400947 CAATATGGTGGCAGCTTGATATTATAC 58.599 37.037 18.53 0.00 0.00 1.47
209 213 5.303259 TGGTGGCAGCTTGATATTATACA 57.697 39.130 18.53 0.00 0.00 2.29
210 214 5.689835 TGGTGGCAGCTTGATATTATACAA 58.310 37.500 18.53 0.00 0.00 2.41
211 215 6.306199 TGGTGGCAGCTTGATATTATACAAT 58.694 36.000 18.53 0.00 0.00 2.71
212 216 6.430925 TGGTGGCAGCTTGATATTATACAATC 59.569 38.462 18.53 0.00 0.00 2.67
213 217 6.402550 GGTGGCAGCTTGATATTATACAATCG 60.403 42.308 9.90 0.00 0.00 3.34
214 218 6.368791 GTGGCAGCTTGATATTATACAATCGA 59.631 38.462 0.00 0.00 0.00 3.59
215 219 6.934083 TGGCAGCTTGATATTATACAATCGAA 59.066 34.615 0.00 0.00 0.00 3.71
216 220 7.118245 TGGCAGCTTGATATTATACAATCGAAG 59.882 37.037 0.00 0.00 0.00 3.79
217 221 6.958193 GCAGCTTGATATTATACAATCGAAGC 59.042 38.462 14.67 14.67 36.98 3.86
218 222 7.148507 GCAGCTTGATATTATACAATCGAAGCT 60.149 37.037 16.89 16.89 41.66 3.74
219 223 8.167345 CAGCTTGATATTATACAATCGAAGCTG 58.833 37.037 24.05 24.05 45.08 4.24
220 224 8.090831 AGCTTGATATTATACAATCGAAGCTGA 58.909 33.333 19.19 0.00 40.69 4.26
221 225 8.379161 GCTTGATATTATACAATCGAAGCTGAG 58.621 37.037 14.93 0.00 35.59 3.35
222 226 7.818493 TGATATTATACAATCGAAGCTGAGC 57.182 36.000 0.00 0.00 0.00 4.26
223 227 7.378181 TGATATTATACAATCGAAGCTGAGCA 58.622 34.615 7.39 0.00 0.00 4.26
224 228 8.037166 TGATATTATACAATCGAAGCTGAGCAT 58.963 33.333 7.39 0.00 0.00 3.79
225 229 9.521503 GATATTATACAATCGAAGCTGAGCATA 57.478 33.333 7.39 0.00 0.00 3.14
226 230 7.588143 ATTATACAATCGAAGCTGAGCATAC 57.412 36.000 7.39 0.00 0.00 2.39
227 231 3.251479 ACAATCGAAGCTGAGCATACA 57.749 42.857 7.39 0.00 0.00 2.29
228 232 3.193263 ACAATCGAAGCTGAGCATACAG 58.807 45.455 7.39 0.00 40.43 2.74
241 245 1.672881 GCATACAGCAACACATCCTCC 59.327 52.381 0.00 0.00 44.79 4.30
242 246 2.681976 GCATACAGCAACACATCCTCCT 60.682 50.000 0.00 0.00 44.79 3.69
243 247 3.201290 CATACAGCAACACATCCTCCTC 58.799 50.000 0.00 0.00 0.00 3.71
244 248 1.059098 ACAGCAACACATCCTCCTCA 58.941 50.000 0.00 0.00 0.00 3.86
245 249 1.632409 ACAGCAACACATCCTCCTCAT 59.368 47.619 0.00 0.00 0.00 2.90
246 250 2.286872 CAGCAACACATCCTCCTCATC 58.713 52.381 0.00 0.00 0.00 2.92
247 251 1.911357 AGCAACACATCCTCCTCATCA 59.089 47.619 0.00 0.00 0.00 3.07
248 252 2.012673 GCAACACATCCTCCTCATCAC 58.987 52.381 0.00 0.00 0.00 3.06
249 253 2.616256 GCAACACATCCTCCTCATCACA 60.616 50.000 0.00 0.00 0.00 3.58
250 254 3.678289 CAACACATCCTCCTCATCACAA 58.322 45.455 0.00 0.00 0.00 3.33
251 255 4.074259 CAACACATCCTCCTCATCACAAA 58.926 43.478 0.00 0.00 0.00 2.83
252 256 3.947868 ACACATCCTCCTCATCACAAAG 58.052 45.455 0.00 0.00 0.00 2.77
253 257 2.681848 CACATCCTCCTCATCACAAAGC 59.318 50.000 0.00 0.00 0.00 3.51
254 258 2.306805 ACATCCTCCTCATCACAAAGCA 59.693 45.455 0.00 0.00 0.00 3.91
255 259 2.479566 TCCTCCTCATCACAAAGCAC 57.520 50.000 0.00 0.00 0.00 4.40
256 260 1.699083 TCCTCCTCATCACAAAGCACA 59.301 47.619 0.00 0.00 0.00 4.57
257 261 2.106338 TCCTCCTCATCACAAAGCACAA 59.894 45.455 0.00 0.00 0.00 3.33
258 262 2.227388 CCTCCTCATCACAAAGCACAAC 59.773 50.000 0.00 0.00 0.00 3.32
259 263 2.880268 CTCCTCATCACAAAGCACAACA 59.120 45.455 0.00 0.00 0.00 3.33
260 264 3.286353 TCCTCATCACAAAGCACAACAA 58.714 40.909 0.00 0.00 0.00 2.83
261 265 3.066621 TCCTCATCACAAAGCACAACAAC 59.933 43.478 0.00 0.00 0.00 3.32
262 266 3.067180 CCTCATCACAAAGCACAACAACT 59.933 43.478 0.00 0.00 0.00 3.16
263 267 4.440525 CCTCATCACAAAGCACAACAACTT 60.441 41.667 0.00 0.00 0.00 2.66
264 268 4.671377 TCATCACAAAGCACAACAACTTC 58.329 39.130 0.00 0.00 0.00 3.01
265 269 3.502191 TCACAAAGCACAACAACTTCC 57.498 42.857 0.00 0.00 0.00 3.46
266 270 3.088532 TCACAAAGCACAACAACTTCCT 58.911 40.909 0.00 0.00 0.00 3.36
267 271 3.128589 TCACAAAGCACAACAACTTCCTC 59.871 43.478 0.00 0.00 0.00 3.71
268 272 3.088532 ACAAAGCACAACAACTTCCTCA 58.911 40.909 0.00 0.00 0.00 3.86
269 273 3.129287 ACAAAGCACAACAACTTCCTCAG 59.871 43.478 0.00 0.00 0.00 3.35
270 274 1.312815 AGCACAACAACTTCCTCAGC 58.687 50.000 0.00 0.00 0.00 4.26
271 275 0.312102 GCACAACAACTTCCTCAGCC 59.688 55.000 0.00 0.00 0.00 4.85
272 276 1.972872 CACAACAACTTCCTCAGCCT 58.027 50.000 0.00 0.00 0.00 4.58
273 277 1.876156 CACAACAACTTCCTCAGCCTC 59.124 52.381 0.00 0.00 0.00 4.70
274 278 1.490490 ACAACAACTTCCTCAGCCTCA 59.510 47.619 0.00 0.00 0.00 3.86
275 279 2.149578 CAACAACTTCCTCAGCCTCAG 58.850 52.381 0.00 0.00 0.00 3.35
276 280 1.428869 ACAACTTCCTCAGCCTCAGT 58.571 50.000 0.00 0.00 0.00 3.41
277 281 1.071385 ACAACTTCCTCAGCCTCAGTG 59.929 52.381 0.00 0.00 0.00 3.66
278 282 0.036022 AACTTCCTCAGCCTCAGTGC 59.964 55.000 0.00 0.00 0.00 4.40
279 283 0.835543 ACTTCCTCAGCCTCAGTGCT 60.836 55.000 0.00 0.00 44.00 4.40
280 284 0.108233 CTTCCTCAGCCTCAGTGCTC 60.108 60.000 0.00 0.00 40.32 4.26
281 285 1.548357 TTCCTCAGCCTCAGTGCTCC 61.548 60.000 0.00 0.00 40.32 4.70
282 286 2.288778 CCTCAGCCTCAGTGCTCCA 61.289 63.158 0.00 0.00 40.32 3.86
283 287 1.624479 CCTCAGCCTCAGTGCTCCAT 61.624 60.000 0.00 0.00 40.32 3.41
284 288 0.462225 CTCAGCCTCAGTGCTCCATG 60.462 60.000 0.00 0.00 40.32 3.66
285 289 2.113433 CAGCCTCAGTGCTCCATGC 61.113 63.158 0.00 0.00 40.32 4.06
286 290 2.827642 GCCTCAGTGCTCCATGCC 60.828 66.667 0.00 0.00 42.00 4.40
287 291 2.672908 CCTCAGTGCTCCATGCCA 59.327 61.111 0.00 0.00 42.00 4.92
288 292 1.226542 CCTCAGTGCTCCATGCCAT 59.773 57.895 0.00 0.00 42.00 4.40
289 293 0.395311 CCTCAGTGCTCCATGCCATT 60.395 55.000 0.00 0.00 42.00 3.16
290 294 1.471119 CTCAGTGCTCCATGCCATTT 58.529 50.000 0.00 0.00 42.00 2.32
291 295 2.646930 CTCAGTGCTCCATGCCATTTA 58.353 47.619 0.00 0.00 42.00 1.40
292 296 3.018856 CTCAGTGCTCCATGCCATTTAA 58.981 45.455 0.00 0.00 42.00 1.52
293 297 3.018856 TCAGTGCTCCATGCCATTTAAG 58.981 45.455 0.00 0.00 42.00 1.85
294 298 2.756760 CAGTGCTCCATGCCATTTAAGT 59.243 45.455 0.00 0.00 42.00 2.24
295 299 3.947196 CAGTGCTCCATGCCATTTAAGTA 59.053 43.478 0.00 0.00 42.00 2.24
296 300 4.398988 CAGTGCTCCATGCCATTTAAGTAA 59.601 41.667 0.00 0.00 42.00 2.24
297 301 4.399303 AGTGCTCCATGCCATTTAAGTAAC 59.601 41.667 0.00 0.00 42.00 2.50
298 302 4.157656 GTGCTCCATGCCATTTAAGTAACA 59.842 41.667 0.00 0.00 42.00 2.41
299 303 4.769488 TGCTCCATGCCATTTAAGTAACAA 59.231 37.500 0.00 0.00 42.00 2.83
300 304 5.421693 TGCTCCATGCCATTTAAGTAACAAT 59.578 36.000 0.00 0.00 42.00 2.71
301 305 5.750067 GCTCCATGCCATTTAAGTAACAATG 59.250 40.000 0.00 0.00 35.15 2.82
302 306 6.627953 GCTCCATGCCATTTAAGTAACAATGT 60.628 38.462 0.00 0.00 35.15 2.71
303 307 7.238486 TCCATGCCATTTAAGTAACAATGTT 57.762 32.000 3.43 3.43 0.00 2.71
304 308 8.354711 TCCATGCCATTTAAGTAACAATGTTA 57.645 30.769 1.08 1.08 0.00 2.41
305 309 8.807118 TCCATGCCATTTAAGTAACAATGTTAA 58.193 29.630 7.48 0.00 0.00 2.01
306 310 9.429359 CCATGCCATTTAAGTAACAATGTTAAA 57.571 29.630 7.48 0.94 31.90 1.52
326 330 9.225436 TGTTAAATCACTGATTGTTACTATGCA 57.775 29.630 4.99 0.00 32.14 3.96
327 331 9.708222 GTTAAATCACTGATTGTTACTATGCAG 57.292 33.333 4.99 0.00 32.14 4.41
328 332 6.932356 AATCACTGATTGTTACTATGCAGG 57.068 37.500 3.32 0.00 30.42 4.85
329 333 5.675684 TCACTGATTGTTACTATGCAGGA 57.324 39.130 0.00 0.00 0.00 3.86
330 334 5.664457 TCACTGATTGTTACTATGCAGGAG 58.336 41.667 0.00 0.00 0.00 3.69
331 335 5.422012 TCACTGATTGTTACTATGCAGGAGA 59.578 40.000 5.45 0.00 0.00 3.71
332 336 6.070824 TCACTGATTGTTACTATGCAGGAGAA 60.071 38.462 5.45 0.00 0.00 2.87
333 337 6.765036 CACTGATTGTTACTATGCAGGAGAAT 59.235 38.462 5.45 0.00 0.00 2.40
334 338 7.281774 CACTGATTGTTACTATGCAGGAGAATT 59.718 37.037 5.45 0.00 0.00 2.17
335 339 7.497249 ACTGATTGTTACTATGCAGGAGAATTC 59.503 37.037 5.45 0.00 0.00 2.17
336 340 7.568349 TGATTGTTACTATGCAGGAGAATTCT 58.432 34.615 7.95 7.95 0.00 2.40
337 341 7.496920 TGATTGTTACTATGCAGGAGAATTCTG 59.503 37.037 14.00 0.20 0.00 3.02
338 342 6.544928 TGTTACTATGCAGGAGAATTCTGA 57.455 37.500 14.00 0.00 0.00 3.27
339 343 6.946340 TGTTACTATGCAGGAGAATTCTGAA 58.054 36.000 14.00 0.00 0.00 3.02
340 344 7.568349 TGTTACTATGCAGGAGAATTCTGAAT 58.432 34.615 14.00 2.18 0.00 2.57
341 345 8.049117 TGTTACTATGCAGGAGAATTCTGAATT 58.951 33.333 14.00 15.09 0.00 2.17
342 346 9.547753 GTTACTATGCAGGAGAATTCTGAATTA 57.452 33.333 14.00 0.00 0.00 1.40
343 347 9.547753 TTACTATGCAGGAGAATTCTGAATTAC 57.452 33.333 14.00 11.95 0.00 1.89
344 348 7.800092 ACTATGCAGGAGAATTCTGAATTACT 58.200 34.615 14.00 13.29 0.00 2.24
345 349 6.939132 ATGCAGGAGAATTCTGAATTACTG 57.061 37.500 23.53 23.53 33.73 2.74
346 350 5.809001 TGCAGGAGAATTCTGAATTACTGT 58.191 37.500 25.77 12.00 33.43 3.55
347 351 6.240894 TGCAGGAGAATTCTGAATTACTGTT 58.759 36.000 25.77 7.32 33.43 3.16
348 352 6.149973 TGCAGGAGAATTCTGAATTACTGTTG 59.850 38.462 25.77 17.84 33.43 3.33
349 353 6.150140 GCAGGAGAATTCTGAATTACTGTTGT 59.850 38.462 25.77 6.30 33.43 3.32
350 354 7.308830 GCAGGAGAATTCTGAATTACTGTTGTT 60.309 37.037 25.77 5.68 33.43 2.83
351 355 8.571336 CAGGAGAATTCTGAATTACTGTTGTTT 58.429 33.333 14.00 1.32 0.00 2.83
352 356 9.793259 AGGAGAATTCTGAATTACTGTTGTTTA 57.207 29.630 14.00 0.00 0.00 2.01
397 401 8.543862 ACAGTTTTAAATTACTACTCCTTCCG 57.456 34.615 0.00 0.00 0.00 4.30
398 402 8.152898 ACAGTTTTAAATTACTACTCCTTCCGT 58.847 33.333 0.00 0.00 0.00 4.69
399 403 8.996271 CAGTTTTAAATTACTACTCCTTCCGTT 58.004 33.333 0.00 0.00 0.00 4.44
400 404 9.212641 AGTTTTAAATTACTACTCCTTCCGTTC 57.787 33.333 0.00 0.00 0.00 3.95
401 405 8.446273 GTTTTAAATTACTACTCCTTCCGTTCC 58.554 37.037 0.00 0.00 0.00 3.62
402 406 5.750352 AAATTACTACTCCTTCCGTTCCA 57.250 39.130 0.00 0.00 0.00 3.53
403 407 5.750352 AATTACTACTCCTTCCGTTCCAA 57.250 39.130 0.00 0.00 0.00 3.53
404 408 5.750352 ATTACTACTCCTTCCGTTCCAAA 57.250 39.130 0.00 0.00 0.00 3.28
405 409 5.750352 TTACTACTCCTTCCGTTCCAAAT 57.250 39.130 0.00 0.00 0.00 2.32
406 410 4.635699 ACTACTCCTTCCGTTCCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
407 411 5.750352 ACTACTCCTTCCGTTCCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
408 412 5.485620 ACTACTCCTTCCGTTCCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
409 413 4.635699 ACTCCTTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
410 414 4.576879 ACTCCTTCCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
411 415 3.592059 TCCTTCCGTTCCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
412 416 3.007182 TCCTTCCGTTCCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
413 417 3.370061 CCTTCCGTTCCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
414 418 2.598589 TCCGTTCCAAATTACTCGTCG 58.401 47.619 0.00 0.00 0.00 5.12
415 419 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
416 420 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
417 421 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
418 422 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
419 423 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
420 424 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
421 425 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
422 426 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
423 427 4.092821 CCAAATTACTCGTCGCTGAAATGA 59.907 41.667 0.00 0.00 0.00 2.57
424 428 5.390461 CCAAATTACTCGTCGCTGAAATGAA 60.390 40.000 0.00 0.00 0.00 2.57
425 429 6.250819 CAAATTACTCGTCGCTGAAATGAAT 58.749 36.000 0.00 0.00 0.00 2.57
426 430 7.398746 CAAATTACTCGTCGCTGAAATGAATA 58.601 34.615 0.00 0.00 0.00 1.75
427 431 7.715265 AATTACTCGTCGCTGAAATGAATAT 57.285 32.000 0.00 0.00 0.00 1.28
428 432 8.812147 AATTACTCGTCGCTGAAATGAATATA 57.188 30.769 0.00 0.00 0.00 0.86
429 433 8.988064 ATTACTCGTCGCTGAAATGAATATAT 57.012 30.769 0.00 0.00 0.00 0.86
430 434 6.936222 ACTCGTCGCTGAAATGAATATATC 57.064 37.500 0.00 0.00 0.00 1.63
431 435 6.682746 ACTCGTCGCTGAAATGAATATATCT 58.317 36.000 0.00 0.00 0.00 1.98
432 436 7.817641 ACTCGTCGCTGAAATGAATATATCTA 58.182 34.615 0.00 0.00 0.00 1.98
433 437 7.965655 ACTCGTCGCTGAAATGAATATATCTAG 59.034 37.037 0.00 0.00 0.00 2.43
434 438 8.040716 TCGTCGCTGAAATGAATATATCTAGA 57.959 34.615 0.00 0.00 0.00 2.43
435 439 8.512138 TCGTCGCTGAAATGAATATATCTAGAA 58.488 33.333 0.00 0.00 0.00 2.10
436 440 8.579600 CGTCGCTGAAATGAATATATCTAGAAC 58.420 37.037 0.00 0.00 0.00 3.01
437 441 9.632807 GTCGCTGAAATGAATATATCTAGAACT 57.367 33.333 0.00 0.00 0.00 3.01
466 470 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
467 471 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
468 472 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
469 473 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
470 474 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
471 475 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
472 476 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
473 477 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
474 478 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
475 479 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
476 480 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
477 481 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
478 482 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
479 483 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
480 484 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
481 485 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
482 486 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
483 487 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
499 503 3.949842 GGAACGGAGGTAGTAGTTGTT 57.050 47.619 0.00 0.00 0.00 2.83
500 504 3.582780 GGAACGGAGGTAGTAGTTGTTG 58.417 50.000 0.00 0.00 0.00 3.33
501 505 2.738013 ACGGAGGTAGTAGTTGTTGC 57.262 50.000 0.00 0.00 0.00 4.17
502 506 2.245582 ACGGAGGTAGTAGTTGTTGCT 58.754 47.619 0.00 0.00 0.00 3.91
503 507 3.424703 ACGGAGGTAGTAGTTGTTGCTA 58.575 45.455 0.00 0.00 0.00 3.49
504 508 4.021916 ACGGAGGTAGTAGTTGTTGCTAT 58.978 43.478 0.00 0.00 0.00 2.97
505 509 4.142227 ACGGAGGTAGTAGTTGTTGCTATG 60.142 45.833 0.00 0.00 0.00 2.23
506 510 4.120589 GGAGGTAGTAGTTGTTGCTATGC 58.879 47.826 0.00 0.00 0.00 3.14
507 511 4.382685 GGAGGTAGTAGTTGTTGCTATGCA 60.383 45.833 0.00 0.00 36.47 3.96
508 512 4.759782 AGGTAGTAGTTGTTGCTATGCAG 58.240 43.478 0.00 0.00 40.61 4.41
509 513 4.466370 AGGTAGTAGTTGTTGCTATGCAGA 59.534 41.667 0.00 0.00 40.61 4.26
510 514 5.046591 AGGTAGTAGTTGTTGCTATGCAGAA 60.047 40.000 0.00 0.00 40.61 3.02
511 515 5.292101 GGTAGTAGTTGTTGCTATGCAGAAG 59.708 44.000 0.00 0.00 40.61 2.85
512 516 4.899502 AGTAGTTGTTGCTATGCAGAAGT 58.100 39.130 0.00 0.00 40.61 3.01
513 517 4.932200 AGTAGTTGTTGCTATGCAGAAGTC 59.068 41.667 0.00 0.00 40.61 3.01
514 518 4.013267 AGTTGTTGCTATGCAGAAGTCT 57.987 40.909 0.00 0.00 40.61 3.24
515 519 3.750130 AGTTGTTGCTATGCAGAAGTCTG 59.250 43.478 3.84 3.84 46.40 3.51
516 520 3.683365 TGTTGCTATGCAGAAGTCTGA 57.317 42.857 12.54 0.00 46.59 3.27
517 521 3.329386 TGTTGCTATGCAGAAGTCTGAC 58.671 45.455 12.54 0.00 46.59 3.51
518 522 3.007290 TGTTGCTATGCAGAAGTCTGACT 59.993 43.478 12.54 4.06 46.59 3.41
519 523 3.242549 TGCTATGCAGAAGTCTGACTG 57.757 47.619 11.71 0.92 46.59 3.51
520 524 2.564504 TGCTATGCAGAAGTCTGACTGT 59.435 45.455 11.71 1.70 46.59 3.55
521 525 3.007290 TGCTATGCAGAAGTCTGACTGTT 59.993 43.478 11.71 0.00 46.59 3.16
522 526 3.370366 GCTATGCAGAAGTCTGACTGTTG 59.630 47.826 11.71 13.24 46.59 3.33
523 527 2.988010 TGCAGAAGTCTGACTGTTGT 57.012 45.000 11.71 0.00 46.59 3.32
524 528 3.266510 TGCAGAAGTCTGACTGTTGTT 57.733 42.857 11.71 0.00 46.59 2.83
525 529 3.609853 TGCAGAAGTCTGACTGTTGTTT 58.390 40.909 11.71 0.00 46.59 2.83
526 530 4.765273 TGCAGAAGTCTGACTGTTGTTTA 58.235 39.130 11.71 2.30 46.59 2.01
527 531 5.182487 TGCAGAAGTCTGACTGTTGTTTAA 58.818 37.500 11.71 0.00 46.59 1.52
528 532 5.645929 TGCAGAAGTCTGACTGTTGTTTAAA 59.354 36.000 11.71 0.00 46.59 1.52
529 533 6.318648 TGCAGAAGTCTGACTGTTGTTTAAAT 59.681 34.615 11.71 0.00 46.59 1.40
530 534 7.148086 TGCAGAAGTCTGACTGTTGTTTAAATT 60.148 33.333 11.71 0.00 46.59 1.82
531 535 8.342634 GCAGAAGTCTGACTGTTGTTTAAATTA 58.657 33.333 11.71 0.00 46.59 1.40
532 536 9.651718 CAGAAGTCTGACTGTTGTTTAAATTAC 57.348 33.333 11.71 0.00 46.59 1.89
533 537 9.614792 AGAAGTCTGACTGTTGTTTAAATTACT 57.385 29.630 11.71 0.00 0.00 2.24
534 538 9.651718 GAAGTCTGACTGTTGTTTAAATTACTG 57.348 33.333 11.71 0.25 0.00 2.74
535 539 8.958119 AGTCTGACTGTTGTTTAAATTACTGA 57.042 30.769 10.00 0.00 0.00 3.41
536 540 9.561069 AGTCTGACTGTTGTTTAAATTACTGAT 57.439 29.630 10.00 2.76 0.00 2.90
553 557 9.754382 AATTACTGATTTAAAATGCCTGCTATG 57.246 29.630 0.00 0.00 0.00 2.23
554 558 6.780457 ACTGATTTAAAATGCCTGCTATGT 57.220 33.333 0.00 0.00 0.00 2.29
555 559 7.174107 ACTGATTTAAAATGCCTGCTATGTT 57.826 32.000 0.00 0.00 0.00 2.71
556 560 8.292444 ACTGATTTAAAATGCCTGCTATGTTA 57.708 30.769 0.00 0.00 0.00 2.41
557 561 8.190784 ACTGATTTAAAATGCCTGCTATGTTAC 58.809 33.333 0.00 0.00 0.00 2.50
558 562 8.292444 TGATTTAAAATGCCTGCTATGTTACT 57.708 30.769 0.00 0.00 0.00 2.24
559 563 9.402320 TGATTTAAAATGCCTGCTATGTTACTA 57.598 29.630 0.00 0.00 0.00 1.82
565 569 9.712305 AAAATGCCTGCTATGTTACTATAGTAG 57.288 33.333 12.28 4.20 40.74 2.57
566 570 8.423906 AATGCCTGCTATGTTACTATAGTAGT 57.576 34.615 12.28 6.31 39.97 2.73
567 571 7.834881 TGCCTGCTATGTTACTATAGTAGTT 57.165 36.000 12.28 5.00 39.97 2.24
568 572 7.883217 TGCCTGCTATGTTACTATAGTAGTTC 58.117 38.462 12.28 8.30 39.97 3.01
569 573 7.504574 TGCCTGCTATGTTACTATAGTAGTTCA 59.495 37.037 12.28 12.77 39.97 3.18
570 574 8.024285 GCCTGCTATGTTACTATAGTAGTTCAG 58.976 40.741 12.28 13.15 39.97 3.02
571 575 9.286170 CCTGCTATGTTACTATAGTAGTTCAGA 57.714 37.037 12.28 9.70 39.97 3.27
586 590 8.747538 AGTAGTTCAGAATTTAAACAACCAGT 57.252 30.769 0.00 0.00 0.00 4.00
587 591 9.841295 AGTAGTTCAGAATTTAAACAACCAGTA 57.159 29.630 0.00 0.00 0.00 2.74
597 601 8.986477 ATTTAAACAACCAGTAATTCATCAGC 57.014 30.769 0.00 0.00 0.00 4.26
598 602 7.517614 TTAAACAACCAGTAATTCATCAGCA 57.482 32.000 0.00 0.00 0.00 4.41
599 603 6.594788 AAACAACCAGTAATTCATCAGCAT 57.405 33.333 0.00 0.00 0.00 3.79
600 604 6.594788 AACAACCAGTAATTCATCAGCATT 57.405 33.333 0.00 0.00 0.00 3.56
601 605 6.199937 ACAACCAGTAATTCATCAGCATTC 57.800 37.500 0.00 0.00 0.00 2.67
602 606 5.126061 ACAACCAGTAATTCATCAGCATTCC 59.874 40.000 0.00 0.00 0.00 3.01
603 607 4.210331 ACCAGTAATTCATCAGCATTCCC 58.790 43.478 0.00 0.00 0.00 3.97
604 608 4.079558 ACCAGTAATTCATCAGCATTCCCT 60.080 41.667 0.00 0.00 0.00 4.20
605 609 4.277672 CCAGTAATTCATCAGCATTCCCTG 59.722 45.833 0.00 0.00 0.00 4.45
606 610 4.885907 CAGTAATTCATCAGCATTCCCTGT 59.114 41.667 0.00 0.00 34.47 4.00
607 611 5.359009 CAGTAATTCATCAGCATTCCCTGTT 59.641 40.000 0.00 0.00 34.47 3.16
608 612 6.543465 CAGTAATTCATCAGCATTCCCTGTTA 59.457 38.462 0.00 0.00 34.47 2.41
609 613 5.841957 AATTCATCAGCATTCCCTGTTAC 57.158 39.130 0.00 0.00 34.47 2.50
610 614 4.574674 TTCATCAGCATTCCCTGTTACT 57.425 40.909 0.00 0.00 34.47 2.24
611 615 3.877559 TCATCAGCATTCCCTGTTACTG 58.122 45.455 0.00 0.00 34.47 2.74
612 616 3.519107 TCATCAGCATTCCCTGTTACTGA 59.481 43.478 0.00 0.00 38.42 3.41
613 617 4.164796 TCATCAGCATTCCCTGTTACTGAT 59.835 41.667 0.00 0.00 43.68 2.90
614 618 4.574674 TCAGCATTCCCTGTTACTGATT 57.425 40.909 0.00 0.00 34.47 2.57
615 619 4.922206 TCAGCATTCCCTGTTACTGATTT 58.078 39.130 0.00 0.00 34.47 2.17
616 620 6.061022 TCAGCATTCCCTGTTACTGATTTA 57.939 37.500 0.00 0.00 34.47 1.40
617 621 6.115446 TCAGCATTCCCTGTTACTGATTTAG 58.885 40.000 0.00 0.00 34.47 1.85
618 622 6.070251 TCAGCATTCCCTGTTACTGATTTAGA 60.070 38.462 0.00 0.00 34.47 2.10
619 623 6.599244 CAGCATTCCCTGTTACTGATTTAGAA 59.401 38.462 0.00 0.00 0.00 2.10
620 624 6.825721 AGCATTCCCTGTTACTGATTTAGAAG 59.174 38.462 0.00 0.00 0.00 2.85
621 625 6.599638 GCATTCCCTGTTACTGATTTAGAAGT 59.400 38.462 0.00 0.00 0.00 3.01
622 626 7.769044 GCATTCCCTGTTACTGATTTAGAAGTA 59.231 37.037 0.00 0.00 0.00 2.24
623 627 9.667107 CATTCCCTGTTACTGATTTAGAAGTAA 57.333 33.333 0.00 0.00 36.72 2.24
670 674 5.584251 GGCCATTCAGTGAAAACTTGAAAAA 59.416 36.000 10.14 0.00 0.00 1.94
683 687 9.673454 GAAAACTTGAAAAATATCCTTGTACGT 57.327 29.630 0.00 0.00 0.00 3.57
761 765 7.812669 ACTTAACCACACTTTTTCTGAAAACAG 59.187 33.333 14.70 15.78 31.72 3.16
785 791 1.518572 CCGTACGTGCTAGCTTGGG 60.519 63.158 17.23 4.96 0.00 4.12
786 792 1.214589 CGTACGTGCTAGCTTGGGT 59.785 57.895 17.23 10.53 0.00 4.51
791 797 0.532862 CGTGCTAGCTTGGGTATGGG 60.533 60.000 17.23 0.00 0.00 4.00
793 799 1.064685 GTGCTAGCTTGGGTATGGGTT 60.065 52.381 17.23 0.00 0.00 4.11
794 800 1.211949 TGCTAGCTTGGGTATGGGTTC 59.788 52.381 17.23 0.00 0.00 3.62
795 801 1.211949 GCTAGCTTGGGTATGGGTTCA 59.788 52.381 7.70 0.00 0.00 3.18
796 802 2.746472 GCTAGCTTGGGTATGGGTTCAG 60.746 54.545 7.70 0.00 0.00 3.02
797 803 1.668826 AGCTTGGGTATGGGTTCAGA 58.331 50.000 0.00 0.00 0.00 3.27
798 804 1.992557 AGCTTGGGTATGGGTTCAGAA 59.007 47.619 0.00 0.00 0.00 3.02
799 805 2.378547 AGCTTGGGTATGGGTTCAGAAA 59.621 45.455 0.00 0.00 0.00 2.52
800 806 3.161866 GCTTGGGTATGGGTTCAGAAAA 58.838 45.455 0.00 0.00 0.00 2.29
895 915 4.382320 GGCGGACGTGTGCCCTAA 62.382 66.667 15.16 0.00 45.73 2.69
952 972 0.320771 CCTCCAACTGTTCCGTCCAG 60.321 60.000 0.00 0.00 36.01 3.86
953 973 0.320771 CTCCAACTGTTCCGTCCAGG 60.321 60.000 0.00 0.00 42.97 4.45
1703 1850 6.640907 GCTCGAATGTTAATTGACAACCTTTT 59.359 34.615 7.18 0.00 32.47 2.27
1704 1851 7.148967 GCTCGAATGTTAATTGACAACCTTTTC 60.149 37.037 7.18 5.53 32.47 2.29
1715 1862 5.126067 TGACAACCTTTTCAAGAGGAAGAG 58.874 41.667 0.00 0.00 37.45 2.85
1738 1885 3.418684 TCTACCAAGGGTTCTTCTTGC 57.581 47.619 0.00 0.00 40.00 4.01
1862 2010 7.173390 GGCCTTGTATCTCTGAATATTTGTACC 59.827 40.741 0.00 0.00 0.00 3.34
1947 2211 3.576550 TGTACTGTAGCTCATGTGTTGGA 59.423 43.478 0.00 0.00 0.00 3.53
2058 2453 2.263077 GTACTGAAGCTCATGGACACG 58.737 52.381 0.00 0.00 0.00 4.49
2288 2685 7.715249 TGTTTATTGTAGCTGATGGATTAGTCC 59.285 37.037 0.00 0.00 45.31 3.85
2556 3275 7.309377 CCTTTTGTGTTATCCATGTCACTGAAT 60.309 37.037 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.943705 AGTACGATTGTGCATGAGGAAATT 59.056 37.500 3.84 0.00 32.48 1.82
19 20 3.914555 GTGAGTACGATTGTGCATGAG 57.085 47.619 3.84 0.00 32.48 2.90
37 41 4.717629 TTCTCCGCACTCGCCGTG 62.718 66.667 0.95 0.95 46.58 4.94
42 46 0.453793 AGATCAGTTCTCCGCACTCG 59.546 55.000 0.00 0.00 0.00 4.18
64 68 3.212685 GGAGCTTGAGATGGGATTTCAG 58.787 50.000 0.00 0.00 0.00 3.02
70 74 2.092212 GGAATTGGAGCTTGAGATGGGA 60.092 50.000 0.00 0.00 0.00 4.37
96 100 3.286329 TGGCAGAATATGACATGCTGT 57.714 42.857 13.07 0.00 44.15 4.40
117 121 2.529005 TACTCACGCTGACGAGCTGC 62.529 60.000 0.00 0.00 43.77 5.25
151 155 2.094390 GGTAGAGGTGATGCGTACACAA 60.094 50.000 9.27 0.00 39.65 3.33
158 162 1.473434 GGAAAGGGTAGAGGTGATGCG 60.473 57.143 0.00 0.00 0.00 4.73
181 185 1.766494 TCAAGCTGCCACCATATTGG 58.234 50.000 0.00 0.00 45.02 3.16
182 186 5.717078 AATATCAAGCTGCCACCATATTG 57.283 39.130 0.00 0.00 0.00 1.90
183 187 8.108999 TGTATAATATCAAGCTGCCACCATATT 58.891 33.333 0.00 2.95 0.00 1.28
184 188 7.632861 TGTATAATATCAAGCTGCCACCATAT 58.367 34.615 0.00 0.00 0.00 1.78
185 189 7.014988 TGTATAATATCAAGCTGCCACCATA 57.985 36.000 0.00 0.00 0.00 2.74
186 190 5.879763 TGTATAATATCAAGCTGCCACCAT 58.120 37.500 0.00 0.00 0.00 3.55
187 191 5.303259 TGTATAATATCAAGCTGCCACCA 57.697 39.130 0.00 0.00 0.00 4.17
188 192 6.402550 CGATTGTATAATATCAAGCTGCCACC 60.403 42.308 0.00 0.00 0.00 4.61
189 193 6.368791 TCGATTGTATAATATCAAGCTGCCAC 59.631 38.462 0.00 0.00 0.00 5.01
190 194 6.463360 TCGATTGTATAATATCAAGCTGCCA 58.537 36.000 0.00 0.00 0.00 4.92
191 195 6.968131 TCGATTGTATAATATCAAGCTGCC 57.032 37.500 0.00 0.00 0.00 4.85
192 196 6.958193 GCTTCGATTGTATAATATCAAGCTGC 59.042 38.462 11.77 0.00 35.04 5.25
193 197 8.167345 CAGCTTCGATTGTATAATATCAAGCTG 58.833 37.037 23.25 23.25 44.49 4.24
194 198 8.090831 TCAGCTTCGATTGTATAATATCAAGCT 58.909 33.333 14.21 14.21 41.01 3.74
195 199 8.244494 TCAGCTTCGATTGTATAATATCAAGC 57.756 34.615 11.37 11.37 36.40 4.01
196 200 8.379161 GCTCAGCTTCGATTGTATAATATCAAG 58.621 37.037 0.00 0.00 0.00 3.02
197 201 7.872483 TGCTCAGCTTCGATTGTATAATATCAA 59.128 33.333 0.00 0.00 0.00 2.57
198 202 7.378181 TGCTCAGCTTCGATTGTATAATATCA 58.622 34.615 0.00 0.00 0.00 2.15
199 203 7.818493 TGCTCAGCTTCGATTGTATAATATC 57.182 36.000 0.00 0.00 0.00 1.63
200 204 9.307121 GTATGCTCAGCTTCGATTGTATAATAT 57.693 33.333 0.00 0.00 0.00 1.28
201 205 8.303876 TGTATGCTCAGCTTCGATTGTATAATA 58.696 33.333 0.00 0.00 0.00 0.98
202 206 7.154656 TGTATGCTCAGCTTCGATTGTATAAT 58.845 34.615 0.00 0.00 0.00 1.28
203 207 6.512297 TGTATGCTCAGCTTCGATTGTATAA 58.488 36.000 0.00 0.00 0.00 0.98
204 208 6.084326 TGTATGCTCAGCTTCGATTGTATA 57.916 37.500 0.00 0.00 0.00 1.47
205 209 4.948847 TGTATGCTCAGCTTCGATTGTAT 58.051 39.130 0.00 0.00 0.00 2.29
206 210 4.363138 CTGTATGCTCAGCTTCGATTGTA 58.637 43.478 0.00 0.00 0.00 2.41
207 211 3.193263 CTGTATGCTCAGCTTCGATTGT 58.807 45.455 0.00 0.00 0.00 2.71
208 212 3.856104 CTGTATGCTCAGCTTCGATTG 57.144 47.619 0.00 0.00 0.00 2.67
217 221 2.353889 GGATGTGTTGCTGTATGCTCAG 59.646 50.000 0.00 0.00 43.37 3.35
218 222 2.026915 AGGATGTGTTGCTGTATGCTCA 60.027 45.455 0.00 0.00 43.37 4.26
219 223 2.611292 GAGGATGTGTTGCTGTATGCTC 59.389 50.000 0.00 0.00 43.37 4.26
220 224 2.636830 GAGGATGTGTTGCTGTATGCT 58.363 47.619 0.00 0.00 43.37 3.79
221 225 1.672881 GGAGGATGTGTTGCTGTATGC 59.327 52.381 0.00 0.00 43.25 3.14
222 226 3.201290 GAGGAGGATGTGTTGCTGTATG 58.799 50.000 0.00 0.00 0.00 2.39
223 227 2.840038 TGAGGAGGATGTGTTGCTGTAT 59.160 45.455 0.00 0.00 0.00 2.29
224 228 2.256306 TGAGGAGGATGTGTTGCTGTA 58.744 47.619 0.00 0.00 0.00 2.74
225 229 1.059098 TGAGGAGGATGTGTTGCTGT 58.941 50.000 0.00 0.00 0.00 4.40
226 230 2.286872 GATGAGGAGGATGTGTTGCTG 58.713 52.381 0.00 0.00 0.00 4.41
227 231 1.911357 TGATGAGGAGGATGTGTTGCT 59.089 47.619 0.00 0.00 0.00 3.91
228 232 2.012673 GTGATGAGGAGGATGTGTTGC 58.987 52.381 0.00 0.00 0.00 4.17
229 233 3.339253 TGTGATGAGGAGGATGTGTTG 57.661 47.619 0.00 0.00 0.00 3.33
230 234 4.330250 CTTTGTGATGAGGAGGATGTGTT 58.670 43.478 0.00 0.00 0.00 3.32
231 235 3.871463 GCTTTGTGATGAGGAGGATGTGT 60.871 47.826 0.00 0.00 0.00 3.72
232 236 2.681848 GCTTTGTGATGAGGAGGATGTG 59.318 50.000 0.00 0.00 0.00 3.21
233 237 2.306805 TGCTTTGTGATGAGGAGGATGT 59.693 45.455 0.00 0.00 0.00 3.06
234 238 2.681848 GTGCTTTGTGATGAGGAGGATG 59.318 50.000 0.00 0.00 0.00 3.51
235 239 2.306805 TGTGCTTTGTGATGAGGAGGAT 59.693 45.455 0.00 0.00 0.00 3.24
236 240 1.699083 TGTGCTTTGTGATGAGGAGGA 59.301 47.619 0.00 0.00 0.00 3.71
237 241 2.189594 TGTGCTTTGTGATGAGGAGG 57.810 50.000 0.00 0.00 0.00 4.30
238 242 2.880268 TGTTGTGCTTTGTGATGAGGAG 59.120 45.455 0.00 0.00 0.00 3.69
239 243 2.929641 TGTTGTGCTTTGTGATGAGGA 58.070 42.857 0.00 0.00 0.00 3.71
240 244 3.067180 AGTTGTTGTGCTTTGTGATGAGG 59.933 43.478 0.00 0.00 0.00 3.86
241 245 4.297299 AGTTGTTGTGCTTTGTGATGAG 57.703 40.909 0.00 0.00 0.00 2.90
242 246 4.439974 GGAAGTTGTTGTGCTTTGTGATGA 60.440 41.667 0.00 0.00 0.00 2.92
243 247 3.798337 GGAAGTTGTTGTGCTTTGTGATG 59.202 43.478 0.00 0.00 0.00 3.07
244 248 3.701040 AGGAAGTTGTTGTGCTTTGTGAT 59.299 39.130 0.00 0.00 0.00 3.06
245 249 3.088532 AGGAAGTTGTTGTGCTTTGTGA 58.911 40.909 0.00 0.00 0.00 3.58
246 250 3.119531 TGAGGAAGTTGTTGTGCTTTGTG 60.120 43.478 0.00 0.00 0.00 3.33
247 251 3.088532 TGAGGAAGTTGTTGTGCTTTGT 58.911 40.909 0.00 0.00 0.00 2.83
248 252 3.699067 CTGAGGAAGTTGTTGTGCTTTG 58.301 45.455 0.00 0.00 0.00 2.77
249 253 2.099756 GCTGAGGAAGTTGTTGTGCTTT 59.900 45.455 0.00 0.00 0.00 3.51
250 254 1.678101 GCTGAGGAAGTTGTTGTGCTT 59.322 47.619 0.00 0.00 0.00 3.91
251 255 1.312815 GCTGAGGAAGTTGTTGTGCT 58.687 50.000 0.00 0.00 0.00 4.40
252 256 0.312102 GGCTGAGGAAGTTGTTGTGC 59.688 55.000 0.00 0.00 0.00 4.57
253 257 1.876156 GAGGCTGAGGAAGTTGTTGTG 59.124 52.381 0.00 0.00 0.00 3.33
254 258 1.490490 TGAGGCTGAGGAAGTTGTTGT 59.510 47.619 0.00 0.00 0.00 3.32
255 259 2.149578 CTGAGGCTGAGGAAGTTGTTG 58.850 52.381 0.00 0.00 0.00 3.33
256 260 1.771255 ACTGAGGCTGAGGAAGTTGTT 59.229 47.619 5.82 0.00 0.00 2.83
257 261 1.071385 CACTGAGGCTGAGGAAGTTGT 59.929 52.381 5.82 0.00 0.00 3.32
258 262 1.805869 CACTGAGGCTGAGGAAGTTG 58.194 55.000 5.82 0.00 0.00 3.16
259 263 0.036022 GCACTGAGGCTGAGGAAGTT 59.964 55.000 5.82 0.00 0.00 2.66
260 264 0.835543 AGCACTGAGGCTGAGGAAGT 60.836 55.000 5.82 0.00 43.89 3.01
261 265 0.108233 GAGCACTGAGGCTGAGGAAG 60.108 60.000 5.82 0.00 45.99 3.46
262 266 1.548357 GGAGCACTGAGGCTGAGGAA 61.548 60.000 5.82 0.00 45.99 3.36
263 267 1.986757 GGAGCACTGAGGCTGAGGA 60.987 63.158 5.82 0.00 45.99 3.71
264 268 1.624479 ATGGAGCACTGAGGCTGAGG 61.624 60.000 5.82 0.00 45.99 3.86
265 269 0.462225 CATGGAGCACTGAGGCTGAG 60.462 60.000 0.00 0.00 45.99 3.35
266 270 1.600638 CATGGAGCACTGAGGCTGA 59.399 57.895 0.00 0.00 45.99 4.26
267 271 2.113433 GCATGGAGCACTGAGGCTG 61.113 63.158 0.00 0.00 45.99 4.85
277 281 4.981806 TGTTACTTAAATGGCATGGAGC 57.018 40.909 0.00 0.00 44.65 4.70
278 282 6.866480 ACATTGTTACTTAAATGGCATGGAG 58.134 36.000 0.00 2.00 37.96 3.86
279 283 6.849085 ACATTGTTACTTAAATGGCATGGA 57.151 33.333 0.00 0.00 37.96 3.41
280 284 8.994429 TTAACATTGTTACTTAAATGGCATGG 57.006 30.769 8.75 0.00 37.96 3.66
300 304 9.225436 TGCATAGTAACAATCAGTGATTTAACA 57.775 29.630 15.85 6.18 28.87 2.41
301 305 9.708222 CTGCATAGTAACAATCAGTGATTTAAC 57.292 33.333 15.85 13.21 28.87 2.01
302 306 8.892723 CCTGCATAGTAACAATCAGTGATTTAA 58.107 33.333 15.85 1.85 28.87 1.52
303 307 8.264347 TCCTGCATAGTAACAATCAGTGATTTA 58.736 33.333 15.85 6.18 28.87 1.40
304 308 7.112122 TCCTGCATAGTAACAATCAGTGATTT 58.888 34.615 15.85 5.50 28.87 2.17
305 309 6.653020 TCCTGCATAGTAACAATCAGTGATT 58.347 36.000 12.75 12.75 31.86 2.57
306 310 6.098838 TCTCCTGCATAGTAACAATCAGTGAT 59.901 38.462 0.00 0.00 0.00 3.06
307 311 5.422012 TCTCCTGCATAGTAACAATCAGTGA 59.578 40.000 0.00 0.00 0.00 3.41
308 312 5.664457 TCTCCTGCATAGTAACAATCAGTG 58.336 41.667 0.00 0.00 0.00 3.66
309 313 5.939764 TCTCCTGCATAGTAACAATCAGT 57.060 39.130 0.00 0.00 0.00 3.41
310 314 7.714377 AGAATTCTCCTGCATAGTAACAATCAG 59.286 37.037 0.88 0.00 0.00 2.90
311 315 7.496920 CAGAATTCTCCTGCATAGTAACAATCA 59.503 37.037 4.57 0.00 0.00 2.57
312 316 7.712639 TCAGAATTCTCCTGCATAGTAACAATC 59.287 37.037 4.57 0.00 0.00 2.67
313 317 7.568349 TCAGAATTCTCCTGCATAGTAACAAT 58.432 34.615 4.57 0.00 0.00 2.71
314 318 6.946340 TCAGAATTCTCCTGCATAGTAACAA 58.054 36.000 4.57 0.00 0.00 2.83
315 319 6.544928 TCAGAATTCTCCTGCATAGTAACA 57.455 37.500 4.57 0.00 0.00 2.41
316 320 8.443953 AATTCAGAATTCTCCTGCATAGTAAC 57.556 34.615 4.57 0.00 0.00 2.50
317 321 9.547753 GTAATTCAGAATTCTCCTGCATAGTAA 57.452 33.333 11.87 0.00 32.38 2.24
318 322 8.928448 AGTAATTCAGAATTCTCCTGCATAGTA 58.072 33.333 11.87 0.00 32.38 1.82
319 323 7.714377 CAGTAATTCAGAATTCTCCTGCATAGT 59.286 37.037 11.87 0.00 32.38 2.12
320 324 7.714377 ACAGTAATTCAGAATTCTCCTGCATAG 59.286 37.037 11.87 0.00 30.55 2.23
321 325 7.568349 ACAGTAATTCAGAATTCTCCTGCATA 58.432 34.615 11.87 0.00 30.55 3.14
322 326 6.421485 ACAGTAATTCAGAATTCTCCTGCAT 58.579 36.000 11.87 1.01 30.55 3.96
323 327 5.809001 ACAGTAATTCAGAATTCTCCTGCA 58.191 37.500 11.87 0.00 30.55 4.41
324 328 6.150140 ACAACAGTAATTCAGAATTCTCCTGC 59.850 38.462 11.87 0.00 30.55 4.85
325 329 7.678947 ACAACAGTAATTCAGAATTCTCCTG 57.321 36.000 11.87 16.61 32.38 3.86
326 330 8.697507 AAACAACAGTAATTCAGAATTCTCCT 57.302 30.769 11.87 4.55 32.38 3.69
371 375 8.996271 CGGAAGGAGTAGTAATTTAAAACTGTT 58.004 33.333 3.29 0.00 0.00 3.16
372 376 8.152898 ACGGAAGGAGTAGTAATTTAAAACTGT 58.847 33.333 3.29 0.00 0.00 3.55
373 377 8.543862 ACGGAAGGAGTAGTAATTTAAAACTG 57.456 34.615 3.29 0.00 0.00 3.16
374 378 9.212641 GAACGGAAGGAGTAGTAATTTAAAACT 57.787 33.333 0.00 0.00 0.00 2.66
375 379 8.446273 GGAACGGAAGGAGTAGTAATTTAAAAC 58.554 37.037 0.00 0.00 0.00 2.43
376 380 8.156165 TGGAACGGAAGGAGTAGTAATTTAAAA 58.844 33.333 0.00 0.00 0.00 1.52
377 381 7.678837 TGGAACGGAAGGAGTAGTAATTTAAA 58.321 34.615 0.00 0.00 0.00 1.52
378 382 7.243604 TGGAACGGAAGGAGTAGTAATTTAA 57.756 36.000 0.00 0.00 0.00 1.52
379 383 6.855763 TGGAACGGAAGGAGTAGTAATTTA 57.144 37.500 0.00 0.00 0.00 1.40
380 384 5.750352 TGGAACGGAAGGAGTAGTAATTT 57.250 39.130 0.00 0.00 0.00 1.82
381 385 5.750352 TTGGAACGGAAGGAGTAGTAATT 57.250 39.130 0.00 0.00 0.00 1.40
382 386 5.750352 TTTGGAACGGAAGGAGTAGTAAT 57.250 39.130 0.00 0.00 0.00 1.89
383 387 5.750352 ATTTGGAACGGAAGGAGTAGTAA 57.250 39.130 0.00 0.00 0.00 2.24
384 388 5.750352 AATTTGGAACGGAAGGAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
385 389 4.635699 AATTTGGAACGGAAGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
386 390 5.731591 AGTAATTTGGAACGGAAGGAGTAG 58.268 41.667 0.00 0.00 0.00 2.57
387 391 5.622914 CGAGTAATTTGGAACGGAAGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
388 392 4.576879 GAGTAATTTGGAACGGAAGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
389 393 3.617263 CGAGTAATTTGGAACGGAAGGAG 59.383 47.826 0.00 0.00 0.00 3.69
390 394 3.007182 ACGAGTAATTTGGAACGGAAGGA 59.993 43.478 0.00 0.00 0.00 3.36
391 395 3.332034 ACGAGTAATTTGGAACGGAAGG 58.668 45.455 0.00 0.00 0.00 3.46
392 396 3.060363 CGACGAGTAATTTGGAACGGAAG 59.940 47.826 0.00 0.00 0.00 3.46
393 397 2.988493 CGACGAGTAATTTGGAACGGAA 59.012 45.455 0.00 0.00 0.00 4.30
394 398 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
395 399 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
396 400 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
397 401 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
398 402 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
399 403 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
400 404 4.092821 TCATTTCAGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
401 405 5.203358 TCATTTCAGCGACGAGTAATTTG 57.797 39.130 0.00 0.00 0.00 2.32
402 406 5.856126 TTCATTTCAGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
403 407 7.715265 ATATTCATTTCAGCGACGAGTAATT 57.285 32.000 0.00 0.00 0.00 1.40
404 408 8.988064 ATATATTCATTTCAGCGACGAGTAAT 57.012 30.769 0.00 0.00 0.00 1.89
405 409 8.297426 AGATATATTCATTTCAGCGACGAGTAA 58.703 33.333 0.00 0.00 0.00 2.24
406 410 7.817641 AGATATATTCATTTCAGCGACGAGTA 58.182 34.615 0.00 0.00 0.00 2.59
407 411 6.682746 AGATATATTCATTTCAGCGACGAGT 58.317 36.000 0.00 0.00 0.00 4.18
408 412 8.178313 TCTAGATATATTCATTTCAGCGACGAG 58.822 37.037 0.00 0.00 0.00 4.18
409 413 8.040716 TCTAGATATATTCATTTCAGCGACGA 57.959 34.615 0.00 0.00 0.00 4.20
410 414 8.579600 GTTCTAGATATATTCATTTCAGCGACG 58.420 37.037 0.00 0.00 0.00 5.12
411 415 9.632807 AGTTCTAGATATATTCATTTCAGCGAC 57.367 33.333 0.00 0.00 0.00 5.19
440 444 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
441 445 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
442 446 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
443 447 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
444 448 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
445 449 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
446 450 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
447 451 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
448 452 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
449 453 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
450 454 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
451 455 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
452 456 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
453 457 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
454 458 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
455 459 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
456 460 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
457 461 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
458 462 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
459 463 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
460 464 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
461 465 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
462 466 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
463 467 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
464 468 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
465 469 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
466 470 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
467 471 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
468 472 2.301009 ACCTCCGTTCCGAATTACTTGT 59.699 45.455 0.00 0.00 0.00 3.16
469 473 2.968675 ACCTCCGTTCCGAATTACTTG 58.031 47.619 0.00 0.00 0.00 3.16
470 474 3.766051 ACTACCTCCGTTCCGAATTACTT 59.234 43.478 0.00 0.00 0.00 2.24
471 475 3.359950 ACTACCTCCGTTCCGAATTACT 58.640 45.455 0.00 0.00 0.00 2.24
472 476 3.790152 ACTACCTCCGTTCCGAATTAC 57.210 47.619 0.00 0.00 0.00 1.89
473 477 4.526970 ACTACTACCTCCGTTCCGAATTA 58.473 43.478 0.00 0.00 0.00 1.40
474 478 3.359950 ACTACTACCTCCGTTCCGAATT 58.640 45.455 0.00 0.00 0.00 2.17
475 479 3.010200 ACTACTACCTCCGTTCCGAAT 57.990 47.619 0.00 0.00 0.00 3.34
476 480 2.489329 CAACTACTACCTCCGTTCCGAA 59.511 50.000 0.00 0.00 0.00 4.30
477 481 2.086869 CAACTACTACCTCCGTTCCGA 58.913 52.381 0.00 0.00 0.00 4.55
478 482 1.815003 ACAACTACTACCTCCGTTCCG 59.185 52.381 0.00 0.00 0.00 4.30
479 483 3.582780 CAACAACTACTACCTCCGTTCC 58.417 50.000 0.00 0.00 0.00 3.62
480 484 2.991866 GCAACAACTACTACCTCCGTTC 59.008 50.000 0.00 0.00 0.00 3.95
481 485 2.631545 AGCAACAACTACTACCTCCGTT 59.368 45.455 0.00 0.00 0.00 4.44
482 486 2.245582 AGCAACAACTACTACCTCCGT 58.754 47.619 0.00 0.00 0.00 4.69
483 487 4.360563 CATAGCAACAACTACTACCTCCG 58.639 47.826 0.00 0.00 0.00 4.63
484 488 4.120589 GCATAGCAACAACTACTACCTCC 58.879 47.826 0.00 0.00 0.00 4.30
485 489 4.755411 TGCATAGCAACAACTACTACCTC 58.245 43.478 0.00 0.00 34.76 3.85
486 490 4.466370 TCTGCATAGCAACAACTACTACCT 59.534 41.667 0.00 0.00 38.41 3.08
487 491 4.755411 TCTGCATAGCAACAACTACTACC 58.245 43.478 0.00 0.00 38.41 3.18
488 492 5.869888 ACTTCTGCATAGCAACAACTACTAC 59.130 40.000 0.00 0.00 38.41 2.73
489 493 6.037786 ACTTCTGCATAGCAACAACTACTA 57.962 37.500 0.00 0.00 38.41 1.82
490 494 4.899502 ACTTCTGCATAGCAACAACTACT 58.100 39.130 0.00 0.00 38.41 2.57
491 495 4.932200 AGACTTCTGCATAGCAACAACTAC 59.068 41.667 0.00 0.00 38.41 2.73
492 496 4.931601 CAGACTTCTGCATAGCAACAACTA 59.068 41.667 0.00 0.00 38.41 2.24
493 497 3.750130 CAGACTTCTGCATAGCAACAACT 59.250 43.478 0.00 0.00 38.41 3.16
494 498 3.748048 TCAGACTTCTGCATAGCAACAAC 59.252 43.478 0.99 0.00 43.46 3.32
495 499 3.748048 GTCAGACTTCTGCATAGCAACAA 59.252 43.478 0.99 0.00 43.46 2.83
496 500 3.007290 AGTCAGACTTCTGCATAGCAACA 59.993 43.478 0.00 0.00 43.46 3.33
497 501 3.370366 CAGTCAGACTTCTGCATAGCAAC 59.630 47.826 0.00 0.00 43.46 4.17
498 502 3.007290 ACAGTCAGACTTCTGCATAGCAA 59.993 43.478 0.00 0.00 43.46 3.91
499 503 2.564504 ACAGTCAGACTTCTGCATAGCA 59.435 45.455 0.00 0.00 43.46 3.49
500 504 3.244033 ACAGTCAGACTTCTGCATAGC 57.756 47.619 0.00 0.00 43.46 2.97
501 505 4.564041 ACAACAGTCAGACTTCTGCATAG 58.436 43.478 0.00 0.00 43.46 2.23
502 506 4.607293 ACAACAGTCAGACTTCTGCATA 57.393 40.909 0.00 0.00 43.46 3.14
503 507 3.482156 ACAACAGTCAGACTTCTGCAT 57.518 42.857 0.00 0.00 43.46 3.96
504 508 2.988010 ACAACAGTCAGACTTCTGCA 57.012 45.000 0.00 0.00 43.46 4.41
505 509 5.734855 TTAAACAACAGTCAGACTTCTGC 57.265 39.130 0.00 0.00 43.46 4.26
506 510 9.651718 GTAATTTAAACAACAGTCAGACTTCTG 57.348 33.333 0.00 3.75 45.08 3.02
507 511 9.614792 AGTAATTTAAACAACAGTCAGACTTCT 57.385 29.630 0.00 0.00 0.00 2.85
508 512 9.651718 CAGTAATTTAAACAACAGTCAGACTTC 57.348 33.333 0.00 0.00 0.00 3.01
509 513 9.391006 TCAGTAATTTAAACAACAGTCAGACTT 57.609 29.630 0.00 0.00 0.00 3.01
510 514 8.958119 TCAGTAATTTAAACAACAGTCAGACT 57.042 30.769 0.00 0.00 0.00 3.24
527 531 9.754382 CATAGCAGGCATTTTAAATCAGTAATT 57.246 29.630 0.00 0.00 0.00 1.40
528 532 8.917088 ACATAGCAGGCATTTTAAATCAGTAAT 58.083 29.630 0.00 0.00 0.00 1.89
529 533 8.292444 ACATAGCAGGCATTTTAAATCAGTAA 57.708 30.769 0.00 0.00 0.00 2.24
530 534 7.880160 ACATAGCAGGCATTTTAAATCAGTA 57.120 32.000 0.00 0.00 0.00 2.74
531 535 6.780457 ACATAGCAGGCATTTTAAATCAGT 57.220 33.333 0.00 0.00 0.00 3.41
532 536 8.408601 AGTAACATAGCAGGCATTTTAAATCAG 58.591 33.333 0.00 0.00 0.00 2.90
533 537 8.292444 AGTAACATAGCAGGCATTTTAAATCA 57.708 30.769 0.00 0.00 0.00 2.57
539 543 9.712305 CTACTATAGTAACATAGCAGGCATTTT 57.288 33.333 13.51 0.00 32.63 1.82
540 544 8.871125 ACTACTATAGTAACATAGCAGGCATTT 58.129 33.333 13.51 0.00 37.23 2.32
541 545 8.423906 ACTACTATAGTAACATAGCAGGCATT 57.576 34.615 13.51 0.00 37.23 3.56
542 546 8.423906 AACTACTATAGTAACATAGCAGGCAT 57.576 34.615 13.51 0.00 38.26 4.40
543 547 7.504574 TGAACTACTATAGTAACATAGCAGGCA 59.495 37.037 13.51 2.48 38.26 4.75
544 548 7.883217 TGAACTACTATAGTAACATAGCAGGC 58.117 38.462 13.51 0.23 38.26 4.85
545 549 9.286170 TCTGAACTACTATAGTAACATAGCAGG 57.714 37.037 13.51 1.96 38.26 4.85
560 564 9.841295 ACTGGTTGTTTAAATTCTGAACTACTA 57.159 29.630 0.00 6.26 32.32 1.82
561 565 8.747538 ACTGGTTGTTTAAATTCTGAACTACT 57.252 30.769 0.00 0.00 32.32 2.57
571 575 9.423061 GCTGATGAATTACTGGTTGTTTAAATT 57.577 29.630 0.00 0.00 0.00 1.82
572 576 8.584157 TGCTGATGAATTACTGGTTGTTTAAAT 58.416 29.630 0.00 0.00 0.00 1.40
573 577 7.946207 TGCTGATGAATTACTGGTTGTTTAAA 58.054 30.769 0.00 0.00 0.00 1.52
574 578 7.517614 TGCTGATGAATTACTGGTTGTTTAA 57.482 32.000 0.00 0.00 0.00 1.52
575 579 7.701539 ATGCTGATGAATTACTGGTTGTTTA 57.298 32.000 0.00 0.00 0.00 2.01
576 580 6.594788 ATGCTGATGAATTACTGGTTGTTT 57.405 33.333 0.00 0.00 0.00 2.83
577 581 6.350445 GGAATGCTGATGAATTACTGGTTGTT 60.350 38.462 0.00 0.00 0.00 2.83
578 582 5.126061 GGAATGCTGATGAATTACTGGTTGT 59.874 40.000 0.00 0.00 0.00 3.32
579 583 5.450965 GGGAATGCTGATGAATTACTGGTTG 60.451 44.000 0.00 0.00 0.00 3.77
580 584 4.646492 GGGAATGCTGATGAATTACTGGTT 59.354 41.667 0.00 0.00 0.00 3.67
581 585 4.079558 AGGGAATGCTGATGAATTACTGGT 60.080 41.667 0.00 0.00 0.00 4.00
582 586 4.277672 CAGGGAATGCTGATGAATTACTGG 59.722 45.833 0.00 0.00 29.54 4.00
583 587 4.885907 ACAGGGAATGCTGATGAATTACTG 59.114 41.667 0.00 0.00 34.77 2.74
584 588 5.121380 ACAGGGAATGCTGATGAATTACT 57.879 39.130 0.00 0.00 0.00 2.24
585 589 5.841957 AACAGGGAATGCTGATGAATTAC 57.158 39.130 0.00 0.00 0.00 1.89
586 590 6.543465 CAGTAACAGGGAATGCTGATGAATTA 59.457 38.462 0.00 0.00 0.00 1.40
587 591 5.359009 CAGTAACAGGGAATGCTGATGAATT 59.641 40.000 0.00 0.00 0.00 2.17
588 592 4.885907 CAGTAACAGGGAATGCTGATGAAT 59.114 41.667 0.00 0.00 0.00 2.57
589 593 4.019411 TCAGTAACAGGGAATGCTGATGAA 60.019 41.667 0.00 0.00 0.00 2.57
590 594 3.519107 TCAGTAACAGGGAATGCTGATGA 59.481 43.478 0.00 0.00 0.00 2.92
591 595 3.877559 TCAGTAACAGGGAATGCTGATG 58.122 45.455 0.00 0.00 0.00 3.07
592 596 4.785346 ATCAGTAACAGGGAATGCTGAT 57.215 40.909 0.00 0.00 38.42 2.90
593 597 4.574674 AATCAGTAACAGGGAATGCTGA 57.425 40.909 0.00 0.00 37.38 4.26
594 598 6.115446 TCTAAATCAGTAACAGGGAATGCTG 58.885 40.000 0.00 0.00 0.00 4.41
595 599 6.313519 TCTAAATCAGTAACAGGGAATGCT 57.686 37.500 0.00 0.00 0.00 3.79
596 600 6.599638 ACTTCTAAATCAGTAACAGGGAATGC 59.400 38.462 0.00 0.00 0.00 3.56
597 601 9.667107 TTACTTCTAAATCAGTAACAGGGAATG 57.333 33.333 0.00 0.00 31.79 2.67
605 609 5.801947 TCGCCGTTACTTCTAAATCAGTAAC 59.198 40.000 10.79 10.79 46.45 2.50
606 610 5.953183 TCGCCGTTACTTCTAAATCAGTAA 58.047 37.500 0.00 0.00 33.89 2.24
607 611 5.565592 TCGCCGTTACTTCTAAATCAGTA 57.434 39.130 0.00 0.00 0.00 2.74
608 612 4.445452 TCGCCGTTACTTCTAAATCAGT 57.555 40.909 0.00 0.00 0.00 3.41
609 613 4.863131 ACTTCGCCGTTACTTCTAAATCAG 59.137 41.667 0.00 0.00 0.00 2.90
610 614 4.813027 ACTTCGCCGTTACTTCTAAATCA 58.187 39.130 0.00 0.00 0.00 2.57
611 615 6.694411 TGATACTTCGCCGTTACTTCTAAATC 59.306 38.462 0.00 0.00 0.00 2.17
612 616 6.567050 TGATACTTCGCCGTTACTTCTAAAT 58.433 36.000 0.00 0.00 0.00 1.40
613 617 5.953183 TGATACTTCGCCGTTACTTCTAAA 58.047 37.500 0.00 0.00 0.00 1.85
614 618 5.565592 TGATACTTCGCCGTTACTTCTAA 57.434 39.130 0.00 0.00 0.00 2.10
615 619 5.124457 ACTTGATACTTCGCCGTTACTTCTA 59.876 40.000 0.00 0.00 0.00 2.10
616 620 4.082354 ACTTGATACTTCGCCGTTACTTCT 60.082 41.667 0.00 0.00 0.00 2.85
617 621 4.031426 CACTTGATACTTCGCCGTTACTTC 59.969 45.833 0.00 0.00 0.00 3.01
618 622 3.924686 CACTTGATACTTCGCCGTTACTT 59.075 43.478 0.00 0.00 0.00 2.24
619 623 3.192001 TCACTTGATACTTCGCCGTTACT 59.808 43.478 0.00 0.00 0.00 2.24
620 624 3.504863 TCACTTGATACTTCGCCGTTAC 58.495 45.455 0.00 0.00 0.00 2.50
621 625 3.853831 TCACTTGATACTTCGCCGTTA 57.146 42.857 0.00 0.00 0.00 3.18
622 626 2.736144 TCACTTGATACTTCGCCGTT 57.264 45.000 0.00 0.00 0.00 4.44
623 627 2.736144 TTCACTTGATACTTCGCCGT 57.264 45.000 0.00 0.00 0.00 5.68
624 628 3.720920 CGTTTTCACTTGATACTTCGCCG 60.721 47.826 0.00 0.00 0.00 6.46
670 674 6.479972 TGATCCAAAGACGTACAAGGATAT 57.520 37.500 10.85 0.00 36.09 1.63
683 687 5.097742 ACCATACGTTCATGATCCAAAGA 57.902 39.130 0.00 0.00 0.00 2.52
799 805 8.190784 AGATTGAACACGATCTGTTTTCTTTTT 58.809 29.630 10.56 0.00 43.60 1.94
800 806 7.645340 CAGATTGAACACGATCTGTTTTCTTTT 59.355 33.333 15.36 1.65 43.60 2.27
895 915 2.610859 ATGGGGCCGTTGGAGAGT 60.611 61.111 0.00 0.00 0.00 3.24
952 972 9.178758 ACATATTTCATCAGAAGGTTTAACTCC 57.821 33.333 0.00 0.00 34.71 3.85
954 974 9.739276 TGACATATTTCATCAGAAGGTTTAACT 57.261 29.630 0.00 0.00 34.71 2.24
1601 1745 2.932234 CGCTCCTGGACGGAACAGT 61.932 63.158 9.78 0.00 42.53 3.55
1602 1746 2.125912 CGCTCCTGGACGGAACAG 60.126 66.667 9.78 0.00 42.53 3.16
1603 1747 4.373116 GCGCTCCTGGACGGAACA 62.373 66.667 16.50 0.00 42.53 3.18
1703 1850 5.423610 CCTTGGTAGATTCTCTTCCTCTTGA 59.576 44.000 0.00 0.00 35.28 3.02
1704 1851 5.396213 CCCTTGGTAGATTCTCTTCCTCTTG 60.396 48.000 0.00 0.00 35.28 3.02
1715 1862 4.396478 GCAAGAAGAACCCTTGGTAGATTC 59.604 45.833 0.00 0.00 40.85 2.52
1738 1885 5.959527 CGATTTTCATCACCAAGAACATACG 59.040 40.000 0.00 0.00 0.00 3.06
1862 2010 1.390123 CACAAGTACCAATGAGCGTCG 59.610 52.381 0.00 0.00 0.00 5.12
1947 2211 8.223330 AGAGATACAAGGCCATCTAAAATTCAT 58.777 33.333 5.01 0.00 31.63 2.57
2108 2503 3.916776 GCATCAAACAAGTGAGCTTTAGC 59.083 43.478 0.00 0.00 42.49 3.09
2214 2610 3.627395 TGTGCCTTATTACCCTGTCTG 57.373 47.619 0.00 0.00 0.00 3.51
2288 2685 4.245660 TCCGTCTTGCTAAATTCTGAGTG 58.754 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.