Multiple sequence alignment - TraesCS6D01G381700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G381700 chr6D 100.000 3771 0 0 765 4535 462015325 462011555 0.000000e+00 6964.0
1 TraesCS6D01G381700 chr6D 84.961 1782 205 30 1805 3551 461856019 461854266 0.000000e+00 1748.0
2 TraesCS6D01G381700 chr6D 89.837 797 49 13 3759 4535 461854131 461853347 0.000000e+00 994.0
3 TraesCS6D01G381700 chr6D 85.095 899 127 6 1789 2686 461924096 461924988 0.000000e+00 911.0
4 TraesCS6D01G381700 chr6D 100.000 377 0 0 1 377 462016089 462015713 0.000000e+00 697.0
5 TraesCS6D01G381700 chr6D 85.294 578 77 6 2681 3255 461925025 461925597 1.410000e-164 590.0
6 TraesCS6D01G381700 chr6D 80.438 593 92 13 2969 3541 68362820 68362232 9.010000e-117 431.0
7 TraesCS6D01G381700 chr6D 94.203 69 4 0 3694 3762 461854267 461854199 6.200000e-19 106.0
8 TraesCS6D01G381700 chr6D 92.105 76 3 1 3544 3619 401777776 401777704 2.230000e-18 104.0
9 TraesCS6D01G381700 chr6D 84.694 98 10 3 1461 1556 68365413 68365319 4.830000e-15 93.5
10 TraesCS6D01G381700 chr6A 95.974 2906 85 19 1639 4534 608861246 608858363 0.000000e+00 4689.0
11 TraesCS6D01G381700 chr6A 84.887 1641 209 23 1681 3285 608902413 608900776 0.000000e+00 1620.0
12 TraesCS6D01G381700 chr6A 82.870 1080 137 36 2475 3518 608968559 608969626 0.000000e+00 926.0
13 TraesCS6D01G381700 chr6A 85.317 899 126 6 1789 2686 608710177 608711070 0.000000e+00 924.0
14 TraesCS6D01G381700 chr6A 91.518 224 16 1 1639 1859 608902545 608902322 5.700000e-79 305.0
15 TraesCS6D01G381700 chr6A 84.937 239 23 10 3311 3541 608900673 608900440 3.530000e-56 230.0
16 TraesCS6D01G381700 chr6A 78.515 377 47 16 1194 1546 608902909 608902543 2.750000e-52 217.0
17 TraesCS6D01G381700 chr6A 77.604 384 43 20 1194 1546 608861615 608861244 4.630000e-45 193.0
18 TraesCS6D01G381700 chr6A 83.425 181 14 10 4023 4194 608862620 608862447 2.180000e-33 154.0
19 TraesCS6D01G381700 chr6A 94.366 71 4 0 3622 3692 93285776 93285706 4.800000e-20 110.0
20 TraesCS6D01G381700 chr6A 93.151 73 2 1 3549 3621 93285788 93285719 2.230000e-18 104.0
21 TraesCS6D01G381700 chr6A 90.244 82 2 3 3542 3621 41606108 41606185 8.030000e-18 102.0
22 TraesCS6D01G381700 chr6B 95.436 2235 76 11 1639 3873 704184048 704181840 0.000000e+00 3539.0
23 TraesCS6D01G381700 chr6B 84.860 1638 206 25 1681 3285 704178066 704176438 0.000000e+00 1613.0
24 TraesCS6D01G381700 chr6B 82.967 1773 233 40 1805 3526 704304687 704302933 0.000000e+00 1537.0
25 TraesCS6D01G381700 chr6B 83.944 1065 160 8 1629 2686 143466380 143465320 0.000000e+00 1009.0
26 TraesCS6D01G381700 chr6B 91.758 728 39 12 3820 4535 704181840 704181122 0.000000e+00 992.0
27 TraesCS6D01G381700 chr6B 84.972 885 128 5 1804 2686 704187445 704188326 0.000000e+00 893.0
28 TraesCS6D01G381700 chr6B 85.569 589 81 3 2681 3268 704188362 704188947 8.340000e-172 614.0
29 TraesCS6D01G381700 chr6B 92.718 206 15 0 1639 1844 704178198 704177993 9.540000e-77 298.0
30 TraesCS6D01G381700 chr6B 77.657 367 41 22 1205 1546 704184396 704184046 7.750000e-43 185.0
31 TraesCS6D01G381700 chr6B 86.806 144 13 5 1379 1521 143466624 143466486 6.070000e-34 156.0
32 TraesCS6D01G381700 chr6B 78.788 132 15 6 3342 3466 704189058 704189183 4.860000e-10 76.8
33 TraesCS6D01G381700 chr5B 84.446 1678 216 26 1639 3285 65588275 65586612 0.000000e+00 1611.0
34 TraesCS6D01G381700 chr5B 84.110 472 51 17 862 1326 65589062 65588608 6.970000e-118 435.0
35 TraesCS6D01G381700 chr5B 85.955 178 20 3 3330 3504 65586502 65586327 7.750000e-43 185.0
36 TraesCS6D01G381700 chr5B 82.313 147 21 3 3546 3692 463213809 463213950 6.160000e-24 122.0
37 TraesCS6D01G381700 chr5B 96.552 58 2 0 1 58 65589420 65589363 3.730000e-16 97.1
38 TraesCS6D01G381700 chr7D 96.591 88 2 1 1533 1619 568011034 568011121 1.310000e-30 145.0
39 TraesCS6D01G381700 chr7D 91.250 80 6 1 3622 3700 167548492 167548413 1.730000e-19 108.0
40 TraesCS6D01G381700 chr3D 98.780 82 0 1 1544 1624 394956515 394956434 1.310000e-30 145.0
41 TraesCS6D01G381700 chr3D 91.176 102 4 4 1519 1620 3099345 3099249 2.850000e-27 134.0
42 TraesCS6D01G381700 chr5D 100.000 77 0 0 1544 1620 273556648 273556572 4.730000e-30 143.0
43 TraesCS6D01G381700 chr5D 100.000 34 0 0 112 145 361647867 361647900 3.790000e-06 63.9
44 TraesCS6D01G381700 chr2D 96.512 86 3 0 1534 1619 116386121 116386036 4.730000e-30 143.0
45 TraesCS6D01G381700 chr2D 95.181 83 4 0 1537 1619 566134769 566134687 1.020000e-26 132.0
46 TraesCS6D01G381700 chr2D 92.000 75 6 0 3622 3696 612817274 612817348 6.200000e-19 106.0
47 TraesCS6D01G381700 chr2D 100.000 34 0 0 112 145 440773496 440773463 3.790000e-06 63.9
48 TraesCS6D01G381700 chr7B 95.506 89 2 2 1544 1630 713590251 713590339 1.700000e-29 141.0
49 TraesCS6D01G381700 chr2A 97.590 83 1 1 1538 1619 560782262 560782180 1.700000e-29 141.0
50 TraesCS6D01G381700 chr2A 88.636 88 9 1 3622 3709 145199890 145199976 6.200000e-19 106.0
51 TraesCS6D01G381700 chr1D 95.455 88 3 1 1532 1619 84569251 84569165 6.120000e-29 139.0
52 TraesCS6D01G381700 chr1D 93.243 74 2 1 3548 3621 276823057 276822987 6.200000e-19 106.0
53 TraesCS6D01G381700 chr1A 93.333 75 5 0 3622 3696 389064542 389064616 1.330000e-20 111.0
54 TraesCS6D01G381700 chr1A 92.405 79 3 1 3543 3621 456336887 456336962 4.800000e-20 110.0
55 TraesCS6D01G381700 chr1A 100.000 33 0 0 113 145 576351696 576351728 1.360000e-05 62.1
56 TraesCS6D01G381700 chr5A 92.208 77 6 0 3626 3702 578056731 578056655 4.800000e-20 110.0
57 TraesCS6D01G381700 chr5A 100.000 33 0 0 113 145 462153074 462153106 1.360000e-05 62.1
58 TraesCS6D01G381700 chr3B 93.243 74 2 1 3548 3621 456070048 456069978 6.200000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G381700 chr6D 462011555 462016089 4534 True 3830.500000 6964 100.000000 1 4535 2 chr6D.!!$R4 4534
1 TraesCS6D01G381700 chr6D 461853347 461856019 2672 True 949.333333 1748 89.667000 1805 4535 3 chr6D.!!$R3 2730
2 TraesCS6D01G381700 chr6D 461924096 461925597 1501 False 750.500000 911 85.194500 1789 3255 2 chr6D.!!$F1 1466
3 TraesCS6D01G381700 chr6D 68362232 68365413 3181 True 262.250000 431 82.566000 1461 3541 2 chr6D.!!$R2 2080
4 TraesCS6D01G381700 chr6A 608858363 608862620 4257 True 1678.666667 4689 85.667667 1194 4534 3 chr6A.!!$R2 3340
5 TraesCS6D01G381700 chr6A 608968559 608969626 1067 False 926.000000 926 82.870000 2475 3518 1 chr6A.!!$F3 1043
6 TraesCS6D01G381700 chr6A 608710177 608711070 893 False 924.000000 924 85.317000 1789 2686 1 chr6A.!!$F2 897
7 TraesCS6D01G381700 chr6A 608900440 608902909 2469 True 593.000000 1620 84.964250 1194 3541 4 chr6A.!!$R3 2347
8 TraesCS6D01G381700 chr6B 704302933 704304687 1754 True 1537.000000 1537 82.967000 1805 3526 1 chr6B.!!$R1 1721
9 TraesCS6D01G381700 chr6B 704176438 704184396 7958 True 1325.400000 3539 88.485800 1205 4535 5 chr6B.!!$R3 3330
10 TraesCS6D01G381700 chr6B 143465320 143466624 1304 True 582.500000 1009 85.375000 1379 2686 2 chr6B.!!$R2 1307
11 TraesCS6D01G381700 chr6B 704187445 704189183 1738 False 527.933333 893 83.109667 1804 3466 3 chr6B.!!$F1 1662
12 TraesCS6D01G381700 chr5B 65586327 65589420 3093 True 582.025000 1611 87.765750 1 3504 4 chr5B.!!$R1 3503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.179129 GAAGGCCGATGGTGCAAATG 60.179 55.0 0.0 0.0 0.0 2.32 F
1042 1125 0.114168 CTTGTTCCATCCCCACCCAA 59.886 55.0 0.0 0.0 0.0 4.12 F
1153 1236 0.249911 GCGGCCGTAGATGAAGGAAT 60.250 55.0 28.7 0.0 0.0 3.01 F
1636 1998 0.256464 ACAAAACAGACAACGGGGGA 59.744 50.0 0.0 0.0 0.0 4.81 F
1692 2057 0.680618 TCCCCTTAACGCAGTCGAAA 59.319 50.0 0.0 0.0 45.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1190 0.113190 AAGGGCAGAAGAGGTTTGGG 59.887 55.000 0.00 0.0 0.00 4.12 R
2222 2680 0.527565 AGCAAATGCATCCGGACAAC 59.472 50.000 6.12 0.0 45.16 3.32 R
3132 10824 3.056328 GCGCCACCTGAGGAAACC 61.056 66.667 4.99 0.0 0.00 3.27 R
3427 11331 0.719465 ATAAGCACGTTACTGCACGC 59.281 50.000 8.85 0.0 44.37 5.34 R
3682 11603 0.472471 AAAGTTTGTGCTCCCTCCGA 59.528 50.000 0.00 0.0 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 5.107133 ACGTCTTATATTTTGACACGGAGG 58.893 41.667 0.00 0.00 0.00 4.30
140 141 4.506654 CGTCTTATATTTTGACACGGAGGG 59.493 45.833 0.00 0.00 0.00 4.30
141 142 5.667466 GTCTTATATTTTGACACGGAGGGA 58.333 41.667 0.00 0.00 0.00 4.20
142 143 5.753921 GTCTTATATTTTGACACGGAGGGAG 59.246 44.000 0.00 0.00 0.00 4.30
143 144 5.424252 TCTTATATTTTGACACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
168 169 0.179129 GAAGGCCGATGGTGCAAATG 60.179 55.000 0.00 0.00 0.00 2.32
194 195 5.963253 ACAATATTTGTCCATGATTCCCCAA 59.037 36.000 0.00 0.00 40.56 4.12
222 223 1.917273 TTACGAGCGTGCCTAATGAC 58.083 50.000 5.69 0.00 0.00 3.06
252 259 9.770097 CCTCTTAACTATTTTAGAGCATCATCA 57.230 33.333 3.92 0.00 37.23 3.07
264 271 5.128919 AGAGCATCATCAGTGTAAAATCCC 58.871 41.667 0.00 0.00 37.82 3.85
274 281 6.064060 TCAGTGTAAAATCCCCATGATCATC 58.936 40.000 4.86 0.00 31.61 2.92
275 282 6.066690 CAGTGTAAAATCCCCATGATCATCT 58.933 40.000 4.86 0.00 31.61 2.90
303 310 7.042187 GCTGATGATCAAGTTATTCACTTCGAT 60.042 37.037 0.00 0.00 44.60 3.59
314 321 3.953712 TCACTTCGATCCAAGCAAGTA 57.046 42.857 0.00 0.00 0.00 2.24
315 322 4.265904 TCACTTCGATCCAAGCAAGTAA 57.734 40.909 0.00 0.00 0.00 2.24
316 323 4.245660 TCACTTCGATCCAAGCAAGTAAG 58.754 43.478 0.00 0.00 0.00 2.34
318 325 4.452455 CACTTCGATCCAAGCAAGTAAGTT 59.548 41.667 0.00 0.00 0.00 2.66
319 326 4.691216 ACTTCGATCCAAGCAAGTAAGTTC 59.309 41.667 0.00 0.00 0.00 3.01
323 330 5.763204 TCGATCCAAGCAAGTAAGTTCTTTT 59.237 36.000 0.00 0.00 0.00 2.27
325 332 7.442969 TCGATCCAAGCAAGTAAGTTCTTTTTA 59.557 33.333 0.00 0.00 0.00 1.52
326 333 7.746475 CGATCCAAGCAAGTAAGTTCTTTTTAG 59.254 37.037 0.00 0.00 0.00 1.85
327 334 7.272037 TCCAAGCAAGTAAGTTCTTTTTAGG 57.728 36.000 0.00 0.00 0.00 2.69
330 337 8.793592 CCAAGCAAGTAAGTTCTTTTTAGGTAT 58.206 33.333 0.00 0.00 0.00 2.73
353 374 3.434940 AAGCTTTGGTCTAAATCGGGT 57.565 42.857 0.00 0.00 0.00 5.28
354 375 4.563140 AAGCTTTGGTCTAAATCGGGTA 57.437 40.909 0.00 0.00 0.00 3.69
356 377 3.518303 AGCTTTGGTCTAAATCGGGTACT 59.482 43.478 0.00 0.00 0.00 2.73
357 378 4.019591 AGCTTTGGTCTAAATCGGGTACTT 60.020 41.667 0.00 0.00 0.00 2.24
358 379 4.094442 GCTTTGGTCTAAATCGGGTACTTG 59.906 45.833 0.00 0.00 0.00 3.16
359 380 3.255969 TGGTCTAAATCGGGTACTTGC 57.744 47.619 0.00 0.00 0.00 4.01
360 381 2.199236 GGTCTAAATCGGGTACTTGCG 58.801 52.381 0.00 0.00 0.00 4.85
361 382 2.159198 GGTCTAAATCGGGTACTTGCGA 60.159 50.000 0.00 0.00 0.00 5.10
362 383 3.114065 GTCTAAATCGGGTACTTGCGAG 58.886 50.000 0.00 0.00 0.00 5.03
363 384 2.756760 TCTAAATCGGGTACTTGCGAGT 59.243 45.455 12.27 12.27 39.97 4.18
364 385 2.467566 AAATCGGGTACTTGCGAGTT 57.532 45.000 12.97 0.00 37.33 3.01
366 387 2.467566 ATCGGGTACTTGCGAGTTTT 57.532 45.000 12.97 0.00 37.33 2.43
367 388 2.243602 TCGGGTACTTGCGAGTTTTT 57.756 45.000 12.97 0.00 37.33 1.94
783 804 2.543777 AGTACAATGTGGCGTGAGTT 57.456 45.000 0.00 0.00 0.00 3.01
784 805 2.846193 AGTACAATGTGGCGTGAGTTT 58.154 42.857 0.00 0.00 0.00 2.66
785 806 3.211045 AGTACAATGTGGCGTGAGTTTT 58.789 40.909 0.00 0.00 0.00 2.43
786 807 3.630312 AGTACAATGTGGCGTGAGTTTTT 59.370 39.130 0.00 0.00 0.00 1.94
813 834 3.520290 TGAGCAATGGGTACTTACGAG 57.480 47.619 0.00 0.00 0.00 4.18
814 835 2.829720 TGAGCAATGGGTACTTACGAGT 59.170 45.455 0.00 0.00 39.97 4.18
815 836 3.259876 TGAGCAATGGGTACTTACGAGTT 59.740 43.478 0.00 0.00 37.33 3.01
816 837 3.596214 AGCAATGGGTACTTACGAGTTG 58.404 45.455 0.00 0.00 37.33 3.16
819 840 1.246649 TGGGTACTTACGAGTTGCGA 58.753 50.000 0.00 0.00 44.57 5.10
820 841 1.068333 TGGGTACTTACGAGTTGCGAC 60.068 52.381 0.00 0.00 44.57 5.19
821 842 1.253999 GGTACTTACGAGTTGCGACG 58.746 55.000 0.00 0.00 44.57 5.12
823 844 2.310577 GTACTTACGAGTTGCGACGTT 58.689 47.619 0.00 0.00 44.57 3.99
824 845 1.126079 ACTTACGAGTTGCGACGTTG 58.874 50.000 0.00 0.00 44.57 4.10
825 846 1.268692 ACTTACGAGTTGCGACGTTGA 60.269 47.619 7.08 0.00 44.57 3.18
826 847 1.782569 CTTACGAGTTGCGACGTTGAA 59.217 47.619 7.08 0.00 44.57 2.69
827 848 2.054687 TACGAGTTGCGACGTTGAAT 57.945 45.000 7.08 0.00 44.57 2.57
828 849 1.214367 ACGAGTTGCGACGTTGAATT 58.786 45.000 7.08 0.00 44.57 2.17
829 850 1.595794 ACGAGTTGCGACGTTGAATTT 59.404 42.857 7.08 0.00 44.57 1.82
830 851 2.031191 ACGAGTTGCGACGTTGAATTTT 59.969 40.909 7.08 0.00 44.57 1.82
831 852 3.033185 CGAGTTGCGACGTTGAATTTTT 58.967 40.909 7.08 0.00 44.57 1.94
858 879 2.730183 TTTGAGAAACTGTTGCGACG 57.270 45.000 0.00 0.00 0.00 5.12
875 896 2.328099 CGTTGAGTTGCTCCTGGGC 61.328 63.158 0.00 0.00 0.00 5.36
877 898 0.324943 GTTGAGTTGCTCCTGGGCTA 59.675 55.000 8.32 0.00 0.00 3.93
889 971 2.463441 TGGGCTACAGAACAGGCTT 58.537 52.632 0.00 0.00 38.56 4.35
895 977 3.386402 GGCTACAGAACAGGCTTATCTCT 59.614 47.826 0.00 0.00 35.77 3.10
925 1007 1.270625 CGGGCCTACTCTTGTGTTGAA 60.271 52.381 0.84 0.00 0.00 2.69
934 1017 2.229784 CTCTTGTGTTGAAATGGGCCTC 59.770 50.000 4.53 0.00 0.00 4.70
949 1032 1.685224 CCTCTGGCCCAAGCTTGTA 59.315 57.895 24.35 7.60 39.73 2.41
950 1033 0.393537 CCTCTGGCCCAAGCTTGTAG 60.394 60.000 24.35 16.22 39.73 2.74
951 1034 0.393537 CTCTGGCCCAAGCTTGTAGG 60.394 60.000 24.35 19.52 39.73 3.18
962 1045 2.482494 AGCTTGTAGGAGGTTAGCCAT 58.518 47.619 0.00 0.00 37.19 4.40
974 1057 3.642848 AGGTTAGCCATGCCCAAATATTG 59.357 43.478 0.00 0.00 37.19 1.90
982 1065 3.317455 TGCCCAAATATTGCCAGATCT 57.683 42.857 0.00 0.00 0.00 2.75
1005 1088 2.028658 CCACAGCGCAGATATACCAGAT 60.029 50.000 11.47 0.00 0.00 2.90
1008 1091 2.232208 CAGCGCAGATATACCAGATCCA 59.768 50.000 11.47 0.00 0.00 3.41
1023 1106 0.759346 ATCCATCGTCTGCCCTAACC 59.241 55.000 0.00 0.00 0.00 2.85
1024 1107 0.325296 TCCATCGTCTGCCCTAACCT 60.325 55.000 0.00 0.00 0.00 3.50
1028 1111 1.053424 TCGTCTGCCCTAACCTTGTT 58.947 50.000 0.00 0.00 0.00 2.83
1029 1112 1.001633 TCGTCTGCCCTAACCTTGTTC 59.998 52.381 0.00 0.00 0.00 3.18
1042 1125 0.114168 CTTGTTCCATCCCCACCCAA 59.886 55.000 0.00 0.00 0.00 4.12
1050 1133 3.182263 CCCCACCCAACCTCCACA 61.182 66.667 0.00 0.00 0.00 4.17
1062 1145 4.077184 TCCACACCCATCGACCGC 62.077 66.667 0.00 0.00 0.00 5.68
1094 1177 3.491652 GCGCCCGCAACTCTTCTC 61.492 66.667 7.91 0.00 41.49 2.87
1095 1178 3.181967 CGCCCGCAACTCTTCTCG 61.182 66.667 0.00 0.00 0.00 4.04
1097 1180 2.048222 CCCGCAACTCTTCTCGCA 60.048 61.111 0.00 0.00 0.00 5.10
1098 1181 1.667830 CCCGCAACTCTTCTCGCAA 60.668 57.895 0.00 0.00 0.00 4.85
1100 1183 1.640428 CCGCAACTCTTCTCGCAATA 58.360 50.000 0.00 0.00 0.00 1.90
1102 1185 2.609459 CCGCAACTCTTCTCGCAATATT 59.391 45.455 0.00 0.00 0.00 1.28
1103 1186 3.063997 CCGCAACTCTTCTCGCAATATTT 59.936 43.478 0.00 0.00 0.00 1.40
1104 1187 4.024438 CGCAACTCTTCTCGCAATATTTG 58.976 43.478 0.00 0.00 0.00 2.32
1105 1188 4.346129 GCAACTCTTCTCGCAATATTTGG 58.654 43.478 0.00 0.00 0.00 3.28
1107 1190 2.945668 ACTCTTCTCGCAATATTTGGGC 59.054 45.455 0.00 0.00 42.68 5.36
1115 1198 1.559219 GCAATATTTGGGCCCAAACCT 59.441 47.619 44.79 33.73 46.80 3.50
1116 1199 2.419990 GCAATATTTGGGCCCAAACCTC 60.420 50.000 44.79 28.74 46.80 3.85
1118 1201 3.490060 ATATTTGGGCCCAAACCTCTT 57.510 42.857 44.79 32.39 46.80 2.85
1120 1203 0.560688 TTTGGGCCCAAACCTCTTCT 59.439 50.000 40.46 0.00 40.51 2.85
1128 1211 1.202927 CCAAACCTCTTCTGCCCTTGA 60.203 52.381 0.00 0.00 0.00 3.02
1129 1212 2.586425 CAAACCTCTTCTGCCCTTGAA 58.414 47.619 0.00 0.00 0.00 2.69
1130 1213 3.160269 CAAACCTCTTCTGCCCTTGAAT 58.840 45.455 0.00 0.00 0.00 2.57
1131 1214 2.797177 ACCTCTTCTGCCCTTGAATC 57.203 50.000 0.00 0.00 0.00 2.52
1132 1215 2.273619 ACCTCTTCTGCCCTTGAATCT 58.726 47.619 0.00 0.00 0.00 2.40
1135 1218 1.101331 CTTCTGCCCTTGAATCTGGC 58.899 55.000 0.00 0.00 45.56 4.85
1139 1222 2.830370 CCCTTGAATCTGGCGGCC 60.830 66.667 13.32 13.32 0.00 6.13
1140 1223 3.204827 CCTTGAATCTGGCGGCCG 61.205 66.667 24.05 24.05 0.00 6.13
1141 1224 2.436646 CTTGAATCTGGCGGCCGT 60.437 61.111 28.70 4.87 0.00 5.68
1142 1225 1.153449 CTTGAATCTGGCGGCCGTA 60.153 57.895 28.70 15.56 0.00 4.02
1143 1226 1.153449 TTGAATCTGGCGGCCGTAG 60.153 57.895 28.70 24.18 0.00 3.51
1144 1227 1.609635 TTGAATCTGGCGGCCGTAGA 61.610 55.000 28.05 28.05 0.00 2.59
1153 1236 0.249911 GCGGCCGTAGATGAAGGAAT 60.250 55.000 28.70 0.00 0.00 3.01
1203 1286 2.154462 CAAGTAAGGAACAGGTGCCAG 58.846 52.381 0.00 0.00 0.00 4.85
1211 1294 0.532862 AACAGGTGCCAGTCTCGTTG 60.533 55.000 0.00 0.00 0.00 4.10
1226 1309 3.119743 TCTCGTTGTGTAATCGGATTCGT 60.120 43.478 6.49 0.00 37.69 3.85
1227 1310 3.173599 TCGTTGTGTAATCGGATTCGTC 58.826 45.455 6.49 0.64 37.69 4.20
1229 1312 2.919229 GTTGTGTAATCGGATTCGTCGT 59.081 45.455 6.49 0.00 37.69 4.34
1234 1317 4.669728 GTGTAATCGGATTCGTCGTAGAAG 59.330 45.833 6.49 0.00 39.69 2.85
1235 1318 4.571984 TGTAATCGGATTCGTCGTAGAAGA 59.428 41.667 6.49 0.00 44.50 2.87
1244 1327 2.414481 TCGTCGTAGAAGAAAGAGACCG 59.586 50.000 0.00 0.00 42.98 4.79
1290 1376 2.685897 TGCTGTTTTTATATGTCCGCCC 59.314 45.455 0.00 0.00 0.00 6.13
1295 1381 1.975660 TTTATATGTCCGCCCCTTGC 58.024 50.000 0.00 0.00 0.00 4.01
1350 1575 1.146930 GCCAGCCTGAATCGGATCA 59.853 57.895 0.00 0.00 0.00 2.92
1373 1598 2.917971 GACGAGGCTATAATAAGCGCTG 59.082 50.000 12.58 0.00 43.74 5.18
1374 1599 2.263077 CGAGGCTATAATAAGCGCTGG 58.737 52.381 12.58 0.00 43.74 4.85
1375 1600 2.622436 GAGGCTATAATAAGCGCTGGG 58.378 52.381 12.58 0.00 43.74 4.45
1376 1601 1.087501 GGCTATAATAAGCGCTGGGC 58.912 55.000 12.58 8.86 43.74 5.36
1377 1602 1.087501 GCTATAATAAGCGCTGGGCC 58.912 55.000 12.58 0.00 45.17 5.80
1399 1654 4.039703 CGGAGCGTCGTTTCAAGAATATA 58.960 43.478 0.00 0.00 0.00 0.86
1400 1655 4.501559 CGGAGCGTCGTTTCAAGAATATAA 59.498 41.667 0.00 0.00 0.00 0.98
1403 1658 7.096353 CGGAGCGTCGTTTCAAGAATATAATTA 60.096 37.037 0.00 0.00 0.00 1.40
1404 1659 8.709646 GGAGCGTCGTTTCAAGAATATAATTAT 58.290 33.333 2.97 2.97 0.00 1.28
1449 1707 5.392595 GCTGTAAGTTGTCTGTTTTGTTCCA 60.393 40.000 0.00 0.00 35.30 3.53
1478 1737 1.062587 CGGATCGCCATGAAGTTCAAC 59.937 52.381 10.14 1.88 0.00 3.18
1515 1774 3.676172 CAGCCGTGATGTAAGTCGTTTTA 59.324 43.478 0.00 0.00 0.00 1.52
1516 1775 4.328983 CAGCCGTGATGTAAGTCGTTTTAT 59.671 41.667 0.00 0.00 0.00 1.40
1517 1776 4.933400 AGCCGTGATGTAAGTCGTTTTATT 59.067 37.500 0.00 0.00 0.00 1.40
1521 1780 7.745594 GCCGTGATGTAAGTCGTTTTATTTTTA 59.254 33.333 0.00 0.00 0.00 1.52
1549 1911 8.880878 TTTTTGCTTTATTTGTTCTTACTCCC 57.119 30.769 0.00 0.00 0.00 4.30
1550 1912 7.833285 TTTGCTTTATTTGTTCTTACTCCCT 57.167 32.000 0.00 0.00 0.00 4.20
1551 1913 7.448748 TTGCTTTATTTGTTCTTACTCCCTC 57.551 36.000 0.00 0.00 0.00 4.30
1552 1914 5.944007 TGCTTTATTTGTTCTTACTCCCTCC 59.056 40.000 0.00 0.00 0.00 4.30
1553 1915 5.064834 GCTTTATTTGTTCTTACTCCCTCCG 59.935 44.000 0.00 0.00 0.00 4.63
1554 1916 5.750352 TTATTTGTTCTTACTCCCTCCGT 57.250 39.130 0.00 0.00 0.00 4.69
1555 1917 4.635699 ATTTGTTCTTACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
1556 1918 3.672767 TTGTTCTTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
1557 1919 1.897802 TGTTCTTACTCCCTCCGTTCC 59.102 52.381 0.00 0.00 0.00 3.62
1558 1920 1.897802 GTTCTTACTCCCTCCGTTCCA 59.102 52.381 0.00 0.00 0.00 3.53
1559 1921 2.301009 GTTCTTACTCCCTCCGTTCCAA 59.699 50.000 0.00 0.00 0.00 3.53
1560 1922 2.612000 TCTTACTCCCTCCGTTCCAAA 58.388 47.619 0.00 0.00 0.00 3.28
1561 1923 3.178865 TCTTACTCCCTCCGTTCCAAAT 58.821 45.455 0.00 0.00 0.00 2.32
1562 1924 3.585732 TCTTACTCCCTCCGTTCCAAATT 59.414 43.478 0.00 0.00 0.00 1.82
1563 1925 4.778958 TCTTACTCCCTCCGTTCCAAATTA 59.221 41.667 0.00 0.00 0.00 1.40
1564 1926 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1565 1927 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1566 1928 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1567 1929 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1568 1930 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1569 1931 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1570 1932 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1571 1933 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
1572 1934 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1573 1935 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
1574 1936 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1575 1937 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1576 1938 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1577 1939 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1578 1940 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1579 1941 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1580 1942 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1581 1943 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1582 1944 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1583 1945 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1584 1946 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1585 1947 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1586 1948 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1587 1949 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1588 1950 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1589 1951 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
1590 1952 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
1591 1953 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
1604 1966 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
1605 1967 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
1606 1968 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1607 1969 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1608 1970 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1609 1971 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1610 1972 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1611 1973 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1612 1974 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1613 1975 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1614 1976 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1615 1977 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1616 1978 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1617 1979 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1618 1980 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1619 1981 3.061322 CCACGACGAGTAATTTGGAACA 58.939 45.455 0.00 0.00 0.00 3.18
1633 1995 1.746220 TGGAACAAAACAGACAACGGG 59.254 47.619 0.00 0.00 31.92 5.28
1634 1996 1.066454 GGAACAAAACAGACAACGGGG 59.934 52.381 0.00 0.00 0.00 5.73
1635 1997 1.066454 GAACAAAACAGACAACGGGGG 59.934 52.381 0.00 0.00 0.00 5.40
1636 1998 0.256464 ACAAAACAGACAACGGGGGA 59.744 50.000 0.00 0.00 0.00 4.81
1637 1999 0.951558 CAAAACAGACAACGGGGGAG 59.048 55.000 0.00 0.00 0.00 4.30
1692 2057 0.680618 TCCCCTTAACGCAGTCGAAA 59.319 50.000 0.00 0.00 45.00 3.46
1775 2140 1.260561 CCTTGAGACGGTGAAAACACG 59.739 52.381 0.00 0.00 0.00 4.49
1778 2143 1.292992 GAGACGGTGAAAACACGGTT 58.707 50.000 13.00 5.65 38.46 4.44
1819 2277 1.324005 GGAGGACAGGCTAAGCGAGT 61.324 60.000 0.00 0.00 0.00 4.18
1893 2351 2.811431 CGTAAAAACCTGCATCCTGTCA 59.189 45.455 0.00 0.00 0.00 3.58
1952 2410 5.601662 GATCGTAATTGATCTCAACCCTCA 58.398 41.667 0.00 0.00 41.26 3.86
2006 2464 5.168569 TGATGTGACGAACAAGATCCTTAC 58.831 41.667 0.00 0.00 43.61 2.34
2222 2680 7.381948 TGAGAAATTCAATGATTTTGTTCGTGG 59.618 33.333 7.71 0.00 31.34 4.94
2317 2775 3.091633 ACATCCTTAGCCATTGCAAGT 57.908 42.857 4.94 0.00 41.13 3.16
2936 9396 1.656095 GGATCGAGTCACAAAAGAGCG 59.344 52.381 0.00 0.00 0.00 5.03
3132 10824 2.223688 TGTGCCCATTGTGTTTCGAAAG 60.224 45.455 11.66 0.00 0.00 2.62
3427 11331 1.808411 AAGCACGTCTATGTTGTGGG 58.192 50.000 0.00 0.00 34.24 4.61
3518 11439 9.513906 TTCAATCTTGTATTTATGAGAACCACA 57.486 29.630 0.00 0.00 0.00 4.17
3564 11485 6.042781 ACACTGAAATACTCCCTCTGTAAACA 59.957 38.462 0.00 0.00 0.00 2.83
3565 11486 6.934645 CACTGAAATACTCCCTCTGTAAACAA 59.065 38.462 0.00 0.00 0.00 2.83
3682 11603 9.436957 TGATCTAAACGCTCTTCTATTTCTTTT 57.563 29.630 0.00 0.00 0.00 2.27
3692 11613 4.138487 TCTATTTCTTTTCGGAGGGAGC 57.862 45.455 0.00 0.00 0.00 4.70
3910 11910 1.209747 GTGATGTGGGGTTAGGGACTC 59.790 57.143 0.00 0.00 41.75 3.36
3915 11915 1.198759 TGGGGTTAGGGACTCTGCAC 61.199 60.000 0.00 0.00 41.75 4.57
4103 12110 4.569966 TGCATCAACAACAACAAAATGACC 59.430 37.500 0.00 0.00 0.00 4.02
4201 12209 3.132289 GGAAATGGTAAAAGCTAAGGGGC 59.868 47.826 0.00 0.00 0.00 5.80
4354 12369 9.822185 CCTTTTATTCAAAGAATTTCCATAGGG 57.178 33.333 0.00 0.00 44.40 3.53
4456 12476 9.750125 ATAAATTTTCTCAGTGTTCCTTTTCAC 57.250 29.630 0.00 0.00 35.13 3.18
4457 12477 4.875544 TTTCTCAGTGTTCCTTTTCACG 57.124 40.909 0.00 0.00 39.25 4.35
4465 12485 4.035208 AGTGTTCCTTTTCACGATGTTCAC 59.965 41.667 0.00 0.00 39.25 3.18
4479 12499 9.605955 TCACGATGTTCACATAAAATTTTACAG 57.394 29.630 12.74 10.86 36.57 2.74
4497 12517 6.798427 TTACAGTAGCTCAAATCTCCAGAT 57.202 37.500 0.00 0.00 36.07 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 9.635404 TCTAAATCTAGACCAAAAGACCAAAAA 57.365 29.630 0.00 0.00 0.00 1.94
82 83 9.063615 GTCTAAATCTAGACCAAAAGACCAAAA 57.936 33.333 0.00 0.00 45.80 2.44
83 84 8.617290 GTCTAAATCTAGACCAAAAGACCAAA 57.383 34.615 0.00 0.00 45.80 3.28
113 114 7.360607 CCTCCGTGTCAAAATATAAGACGTTTT 60.361 37.037 0.00 0.00 35.09 2.43
114 115 6.091713 CCTCCGTGTCAAAATATAAGACGTTT 59.908 38.462 0.00 0.00 35.09 3.60
115 116 5.579511 CCTCCGTGTCAAAATATAAGACGTT 59.420 40.000 0.00 0.00 35.09 3.99
116 117 5.107133 CCTCCGTGTCAAAATATAAGACGT 58.893 41.667 0.00 0.00 35.09 4.34
117 118 4.506654 CCCTCCGTGTCAAAATATAAGACG 59.493 45.833 0.00 0.00 35.09 4.18
118 119 5.667466 TCCCTCCGTGTCAAAATATAAGAC 58.333 41.667 0.00 0.00 0.00 3.01
120 121 5.671493 ACTCCCTCCGTGTCAAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
121 122 5.687166 ACTCCCTCCGTGTCAAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
124 125 6.989155 ATATACTCCCTCCGTGTCAAAATA 57.011 37.500 0.00 0.00 0.00 1.40
125 126 5.888982 ATATACTCCCTCCGTGTCAAAAT 57.111 39.130 0.00 0.00 0.00 1.82
130 131 4.262079 CCTTCAATATACTCCCTCCGTGTC 60.262 50.000 0.00 0.00 0.00 3.67
131 132 3.641906 CCTTCAATATACTCCCTCCGTGT 59.358 47.826 0.00 0.00 0.00 4.49
134 135 2.028020 GGCCTTCAATATACTCCCTCCG 60.028 54.545 0.00 0.00 0.00 4.63
136 137 2.897969 TCGGCCTTCAATATACTCCCTC 59.102 50.000 0.00 0.00 0.00 4.30
139 140 3.008049 ACCATCGGCCTTCAATATACTCC 59.992 47.826 0.00 0.00 0.00 3.85
140 141 3.997021 CACCATCGGCCTTCAATATACTC 59.003 47.826 0.00 0.00 0.00 2.59
141 142 3.807209 GCACCATCGGCCTTCAATATACT 60.807 47.826 0.00 0.00 0.00 2.12
142 143 2.484264 GCACCATCGGCCTTCAATATAC 59.516 50.000 0.00 0.00 0.00 1.47
143 144 2.105649 TGCACCATCGGCCTTCAATATA 59.894 45.455 0.00 0.00 0.00 0.86
168 169 6.098124 TGGGGAATCATGGACAAATATTGTTC 59.902 38.462 0.00 0.00 45.52 3.18
194 195 3.110358 GGCACGCTCGTAAAAACTTTTT 58.890 40.909 4.90 4.90 0.00 1.94
200 201 3.123959 GTCATTAGGCACGCTCGTAAAAA 59.876 43.478 0.00 0.00 0.00 1.94
206 207 2.320367 GATAGTCATTAGGCACGCTCG 58.680 52.381 0.00 0.00 0.00 5.03
211 212 7.056844 AGTTAAGAGGATAGTCATTAGGCAC 57.943 40.000 0.00 0.00 0.00 5.01
249 256 6.017211 TGATCATGGGGATTTTACACTGAT 57.983 37.500 0.00 0.00 36.00 2.90
252 259 6.271585 AGATGATCATGGGGATTTTACACT 57.728 37.500 14.30 0.00 36.00 3.55
290 297 5.245531 ACTTGCTTGGATCGAAGTGAATAA 58.754 37.500 17.47 6.31 0.00 1.40
303 310 6.831868 ACCTAAAAAGAACTTACTTGCTTGGA 59.168 34.615 0.00 0.00 0.00 3.53
325 332 8.095169 CCGATTTAGACCAAAGCTTATATACCT 58.905 37.037 0.00 0.00 30.09 3.08
326 333 7.333672 CCCGATTTAGACCAAAGCTTATATACC 59.666 40.741 0.00 0.00 30.09 2.73
327 334 7.876582 ACCCGATTTAGACCAAAGCTTATATAC 59.123 37.037 0.00 0.00 30.09 1.47
330 337 6.243216 ACCCGATTTAGACCAAAGCTTATA 57.757 37.500 0.00 0.00 30.09 0.98
336 357 4.094442 GCAAGTACCCGATTTAGACCAAAG 59.906 45.833 0.00 0.00 0.00 2.77
348 369 2.243602 AAAAACTCGCAAGTACCCGA 57.756 45.000 0.00 0.00 33.48 5.14
765 786 3.619233 AAAACTCACGCCACATTGTAC 57.381 42.857 0.00 0.00 0.00 2.90
789 810 5.064558 TCGTAAGTACCCATTGCTCAAAAA 58.935 37.500 0.00 0.00 39.48 1.94
790 811 4.643463 TCGTAAGTACCCATTGCTCAAAA 58.357 39.130 0.00 0.00 39.48 2.44
791 812 4.250464 CTCGTAAGTACCCATTGCTCAAA 58.750 43.478 0.00 0.00 39.48 2.69
792 813 3.259876 ACTCGTAAGTACCCATTGCTCAA 59.740 43.478 0.00 0.00 32.59 3.02
793 814 2.829720 ACTCGTAAGTACCCATTGCTCA 59.170 45.455 0.00 0.00 32.59 4.26
794 815 3.521947 ACTCGTAAGTACCCATTGCTC 57.478 47.619 0.00 0.00 32.59 4.26
796 817 2.095372 GCAACTCGTAAGTACCCATTGC 59.905 50.000 0.00 0.00 33.48 3.56
797 818 2.347452 CGCAACTCGTAAGTACCCATTG 59.653 50.000 0.00 0.00 33.48 2.82
798 819 2.231964 TCGCAACTCGTAAGTACCCATT 59.768 45.455 0.00 0.00 39.67 3.16
799 820 1.820519 TCGCAACTCGTAAGTACCCAT 59.179 47.619 0.00 0.00 39.67 4.00
800 821 1.068333 GTCGCAACTCGTAAGTACCCA 60.068 52.381 0.00 0.00 39.67 4.51
801 822 1.622232 GTCGCAACTCGTAAGTACCC 58.378 55.000 0.00 0.00 39.67 3.69
802 823 1.253999 CGTCGCAACTCGTAAGTACC 58.746 55.000 0.00 0.00 39.67 3.34
803 824 1.955762 ACGTCGCAACTCGTAAGTAC 58.044 50.000 0.00 0.00 38.52 2.73
806 827 1.401530 TCAACGTCGCAACTCGTAAG 58.598 50.000 0.00 0.00 39.39 2.34
808 829 2.054687 ATTCAACGTCGCAACTCGTA 57.945 45.000 0.00 0.00 39.39 3.43
809 830 1.214367 AATTCAACGTCGCAACTCGT 58.786 45.000 0.00 0.00 42.12 4.18
810 831 2.294479 AAATTCAACGTCGCAACTCG 57.706 45.000 0.00 0.00 40.15 4.18
837 858 3.120130 ACGTCGCAACAGTTTCTCAAAAA 60.120 39.130 0.00 0.00 0.00 1.94
839 860 2.004017 ACGTCGCAACAGTTTCTCAAA 58.996 42.857 0.00 0.00 0.00 2.69
840 861 1.647346 ACGTCGCAACAGTTTCTCAA 58.353 45.000 0.00 0.00 0.00 3.02
841 862 1.326245 CAACGTCGCAACAGTTTCTCA 59.674 47.619 0.00 0.00 0.00 3.27
842 863 1.591158 TCAACGTCGCAACAGTTTCTC 59.409 47.619 0.00 0.00 0.00 2.87
844 865 1.326548 ACTCAACGTCGCAACAGTTTC 59.673 47.619 0.00 0.00 0.00 2.78
845 866 1.365699 ACTCAACGTCGCAACAGTTT 58.634 45.000 0.00 0.00 0.00 2.66
846 867 1.062002 CAACTCAACGTCGCAACAGTT 59.938 47.619 0.00 0.00 0.00 3.16
847 868 0.650512 CAACTCAACGTCGCAACAGT 59.349 50.000 0.00 0.00 0.00 3.55
848 869 0.654472 GCAACTCAACGTCGCAACAG 60.654 55.000 0.00 0.00 0.00 3.16
849 870 1.087202 AGCAACTCAACGTCGCAACA 61.087 50.000 0.00 0.00 0.00 3.33
850 871 0.383124 GAGCAACTCAACGTCGCAAC 60.383 55.000 0.00 0.00 0.00 4.17
858 879 0.324943 TAGCCCAGGAGCAACTCAAC 59.675 55.000 3.08 0.00 34.23 3.18
875 896 7.913674 AAAAAGAGATAAGCCTGTTCTGTAG 57.086 36.000 0.00 0.00 0.00 2.74
904 986 1.003718 AACACAAGAGTAGGCCCGC 60.004 57.895 0.00 0.00 0.00 6.13
934 1017 0.393537 CTCCTACAAGCTTGGGCCAG 60.394 60.000 29.18 18.78 39.73 4.85
944 1027 2.565841 GCATGGCTAACCTCCTACAAG 58.434 52.381 0.00 0.00 36.63 3.16
949 1032 1.214305 TTGGGCATGGCTAACCTCCT 61.214 55.000 19.78 0.00 36.63 3.69
950 1033 0.324275 TTTGGGCATGGCTAACCTCC 60.324 55.000 17.83 0.00 36.63 4.30
951 1034 1.780503 ATTTGGGCATGGCTAACCTC 58.219 50.000 17.83 0.57 36.63 3.85
962 1045 3.317455 AGATCTGGCAATATTTGGGCA 57.683 42.857 0.00 2.63 38.00 5.36
974 1057 1.884926 GCGCTGTGGTAGATCTGGC 60.885 63.158 5.18 0.00 0.00 4.85
982 1065 2.296190 CTGGTATATCTGCGCTGTGGTA 59.704 50.000 9.73 4.24 0.00 3.25
1005 1088 0.325296 AGGTTAGGGCAGACGATGGA 60.325 55.000 0.00 0.00 0.00 3.41
1008 1091 1.276622 ACAAGGTTAGGGCAGACGAT 58.723 50.000 0.00 0.00 0.00 3.73
1028 1111 1.928567 GAGGTTGGGTGGGGATGGA 60.929 63.158 0.00 0.00 0.00 3.41
1029 1112 2.683475 GAGGTTGGGTGGGGATGG 59.317 66.667 0.00 0.00 0.00 3.51
1042 1125 2.291043 GGTCGATGGGTGTGGAGGT 61.291 63.158 0.00 0.00 0.00 3.85
1077 1160 3.491652 GAGAAGAGTTGCGGGCGC 61.492 66.667 0.00 0.00 42.35 6.53
1079 1162 3.491652 GCGAGAAGAGTTGCGGGC 61.492 66.667 0.00 0.00 0.00 6.13
1081 1164 1.640428 TATTGCGAGAAGAGTTGCGG 58.360 50.000 0.00 0.00 0.00 5.69
1082 1165 3.933155 AATATTGCGAGAAGAGTTGCG 57.067 42.857 0.00 0.00 0.00 4.85
1083 1166 4.346129 CCAAATATTGCGAGAAGAGTTGC 58.654 43.478 0.00 0.00 0.00 4.17
1085 1168 3.378427 GCCCAAATATTGCGAGAAGAGTT 59.622 43.478 0.00 0.00 0.00 3.01
1086 1169 2.945668 GCCCAAATATTGCGAGAAGAGT 59.054 45.455 0.00 0.00 0.00 3.24
1088 1171 2.297701 GGCCCAAATATTGCGAGAAGA 58.702 47.619 0.00 0.00 0.00 2.87
1089 1172 1.338020 GGGCCCAAATATTGCGAGAAG 59.662 52.381 19.95 0.00 0.00 2.85
1090 1173 1.341482 TGGGCCCAAATATTGCGAGAA 60.341 47.619 26.33 0.00 0.00 2.87
1091 1174 0.257328 TGGGCCCAAATATTGCGAGA 59.743 50.000 26.33 0.00 0.00 4.04
1092 1175 1.110442 TTGGGCCCAAATATTGCGAG 58.890 50.000 35.47 0.00 32.44 5.03
1093 1176 1.205893 GTTTGGGCCCAAATATTGCGA 59.794 47.619 44.24 23.51 45.90 5.10
1094 1177 1.650825 GTTTGGGCCCAAATATTGCG 58.349 50.000 44.24 0.00 45.90 4.85
1095 1178 1.559219 AGGTTTGGGCCCAAATATTGC 59.441 47.619 44.24 32.23 45.90 3.56
1097 1180 3.490060 AGAGGTTTGGGCCCAAATATT 57.510 42.857 44.24 32.96 45.90 1.28
1098 1181 3.012844 AGAAGAGGTTTGGGCCCAAATAT 59.987 43.478 44.24 35.68 45.90 1.28
1100 1183 1.149923 AGAAGAGGTTTGGGCCCAAAT 59.850 47.619 44.24 33.12 45.90 2.32
1102 1185 0.178964 CAGAAGAGGTTTGGGCCCAA 60.179 55.000 34.07 34.07 0.00 4.12
1103 1186 1.460255 CAGAAGAGGTTTGGGCCCA 59.540 57.895 24.45 24.45 0.00 5.36
1104 1187 1.979155 GCAGAAGAGGTTTGGGCCC 60.979 63.158 17.59 17.59 0.00 5.80
1105 1188 1.979155 GGCAGAAGAGGTTTGGGCC 60.979 63.158 0.00 0.00 0.00 5.80
1107 1190 0.113190 AAGGGCAGAAGAGGTTTGGG 59.887 55.000 0.00 0.00 0.00 4.12
1115 1198 1.340405 GCCAGATTCAAGGGCAGAAGA 60.340 52.381 8.58 0.00 46.92 2.87
1116 1199 1.101331 GCCAGATTCAAGGGCAGAAG 58.899 55.000 8.58 0.00 46.92 2.85
1128 1211 1.069765 CATCTACGGCCGCCAGATT 59.930 57.895 30.33 18.02 0.00 2.40
1129 1212 1.399744 TTCATCTACGGCCGCCAGAT 61.400 55.000 28.30 28.30 0.00 2.90
1130 1213 2.016393 CTTCATCTACGGCCGCCAGA 62.016 60.000 28.58 27.45 0.00 3.86
1131 1214 1.592669 CTTCATCTACGGCCGCCAG 60.593 63.158 28.58 22.87 0.00 4.85
1132 1215 2.499205 CTTCATCTACGGCCGCCA 59.501 61.111 28.58 13.13 0.00 5.69
1135 1218 1.341531 AGATTCCTTCATCTACGGCCG 59.658 52.381 26.86 26.86 31.25 6.13
1136 1219 2.365617 TGAGATTCCTTCATCTACGGCC 59.634 50.000 0.00 0.00 33.36 6.13
1139 1222 5.457148 CGAACTTGAGATTCCTTCATCTACG 59.543 44.000 0.00 0.00 33.36 3.51
1140 1223 6.334202 ACGAACTTGAGATTCCTTCATCTAC 58.666 40.000 0.00 0.00 33.36 2.59
1141 1224 6.531503 ACGAACTTGAGATTCCTTCATCTA 57.468 37.500 0.00 0.00 33.36 1.98
1142 1225 5.413309 ACGAACTTGAGATTCCTTCATCT 57.587 39.130 0.00 0.00 36.12 2.90
1143 1226 5.872070 AGAACGAACTTGAGATTCCTTCATC 59.128 40.000 0.00 0.00 0.00 2.92
1144 1227 5.641209 CAGAACGAACTTGAGATTCCTTCAT 59.359 40.000 0.00 0.00 0.00 2.57
1153 1236 2.743938 GAGCACAGAACGAACTTGAGA 58.256 47.619 0.00 0.00 0.00 3.27
1203 1286 3.239941 CGAATCCGATTACACAACGAGAC 59.760 47.826 0.00 0.00 38.22 3.36
1211 1294 4.201208 TCTACGACGAATCCGATTACAC 57.799 45.455 0.00 0.00 39.50 2.90
1226 1309 5.638783 GAAATCGGTCTCTTTCTTCTACGA 58.361 41.667 0.00 0.00 0.00 3.43
1227 1310 4.496183 CGAAATCGGTCTCTTTCTTCTACG 59.504 45.833 0.00 0.00 35.37 3.51
1244 1327 9.124807 CACCTTTTTCTAATACAAACCGAAATC 57.875 33.333 0.00 0.00 0.00 2.17
1290 1376 4.209288 CGGATTTACTATTGTCTCGCAAGG 59.791 45.833 0.00 0.00 40.86 3.61
1295 1381 4.840911 TCGACGGATTTACTATTGTCTCG 58.159 43.478 0.00 0.00 0.00 4.04
1331 1547 1.146930 GATCCGATTCAGGCTGGCA 59.853 57.895 15.73 1.81 0.00 4.92
1350 1575 2.094649 GCGCTTATTATAGCCTCGTCCT 60.095 50.000 0.00 0.00 37.90 3.85
1354 1579 2.263077 CCAGCGCTTATTATAGCCTCG 58.737 52.381 7.50 0.00 37.90 4.63
1375 1600 3.011760 CTTGAAACGACGCTCCGGC 62.012 63.158 0.00 0.00 0.00 6.13
1376 1601 0.942410 TTCTTGAAACGACGCTCCGG 60.942 55.000 0.00 0.00 0.00 5.14
1377 1602 1.068474 ATTCTTGAAACGACGCTCCG 58.932 50.000 0.00 0.00 0.00 4.63
1399 1654 7.843686 CGACAAACAAAACGCAAAGAAATAATT 59.156 29.630 0.00 0.00 0.00 1.40
1400 1655 7.334009 CGACAAACAAAACGCAAAGAAATAAT 58.666 30.769 0.00 0.00 0.00 1.28
1403 1658 5.124847 CGACAAACAAAACGCAAAGAAAT 57.875 34.783 0.00 0.00 0.00 2.17
1404 1659 4.554162 CGACAAACAAAACGCAAAGAAA 57.446 36.364 0.00 0.00 0.00 2.52
1426 1681 6.189677 TGGAACAAAACAGACAACTTACAG 57.810 37.500 0.00 0.00 31.92 2.74
1449 1707 2.037641 TCATGGCGATCCGATCTCAAAT 59.962 45.455 6.81 0.00 34.14 2.32
1543 1905 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1544 1906 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1545 1907 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1546 1908 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1547 1909 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1548 1910 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1549 1911 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1550 1912 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1551 1913 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
1552 1914 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
1553 1915 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1554 1916 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1555 1917 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1556 1918 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1557 1919 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1558 1920 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1559 1921 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1560 1922 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1561 1923 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1562 1924 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1563 1925 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1564 1926 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1565 1927 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1566 1928 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
1567 1929 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
1580 1942 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
1581 1943 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
1582 1944 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
1583 1945 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1584 1946 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1585 1947 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1586 1948 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1587 1949 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1588 1950 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1589 1951 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1590 1952 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1591 1953 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1592 1954 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1593 1955 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1594 1956 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1595 1957 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1596 1958 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1597 1959 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1598 1960 3.061322 TGTTCCAAATTACTCGTCGTGG 58.939 45.455 0.00 0.00 0.00 4.94
1599 1961 4.718858 TTGTTCCAAATTACTCGTCGTG 57.281 40.909 0.00 0.00 0.00 4.35
1600 1962 5.064962 TGTTTTGTTCCAAATTACTCGTCGT 59.935 36.000 0.00 0.00 0.00 4.34
1601 1963 5.503498 TGTTTTGTTCCAAATTACTCGTCG 58.497 37.500 0.00 0.00 0.00 5.12
1602 1964 6.631636 GTCTGTTTTGTTCCAAATTACTCGTC 59.368 38.462 0.00 0.00 0.00 4.20
1603 1965 6.094325 TGTCTGTTTTGTTCCAAATTACTCGT 59.906 34.615 0.00 0.00 0.00 4.18
1604 1966 6.491394 TGTCTGTTTTGTTCCAAATTACTCG 58.509 36.000 0.00 0.00 0.00 4.18
1605 1967 7.044314 CGTTGTCTGTTTTGTTCCAAATTACTC 60.044 37.037 0.00 0.00 0.00 2.59
1606 1968 6.750039 CGTTGTCTGTTTTGTTCCAAATTACT 59.250 34.615 0.00 0.00 0.00 2.24
1607 1969 6.020201 CCGTTGTCTGTTTTGTTCCAAATTAC 60.020 38.462 0.00 0.00 0.00 1.89
1608 1970 6.037098 CCGTTGTCTGTTTTGTTCCAAATTA 58.963 36.000 0.00 0.00 0.00 1.40
1609 1971 4.867608 CCGTTGTCTGTTTTGTTCCAAATT 59.132 37.500 0.00 0.00 0.00 1.82
1610 1972 4.429108 CCGTTGTCTGTTTTGTTCCAAAT 58.571 39.130 0.00 0.00 0.00 2.32
1611 1973 3.367498 CCCGTTGTCTGTTTTGTTCCAAA 60.367 43.478 0.00 0.00 0.00 3.28
1612 1974 2.164624 CCCGTTGTCTGTTTTGTTCCAA 59.835 45.455 0.00 0.00 0.00 3.53
1613 1975 1.746220 CCCGTTGTCTGTTTTGTTCCA 59.254 47.619 0.00 0.00 0.00 3.53
1614 1976 1.066454 CCCCGTTGTCTGTTTTGTTCC 59.934 52.381 0.00 0.00 0.00 3.62
1615 1977 1.066454 CCCCCGTTGTCTGTTTTGTTC 59.934 52.381 0.00 0.00 0.00 3.18
1616 1978 1.107945 CCCCCGTTGTCTGTTTTGTT 58.892 50.000 0.00 0.00 0.00 2.83
1617 1979 0.256464 TCCCCCGTTGTCTGTTTTGT 59.744 50.000 0.00 0.00 0.00 2.83
1618 1980 0.951558 CTCCCCCGTTGTCTGTTTTG 59.048 55.000 0.00 0.00 0.00 2.44
1619 1981 0.549469 ACTCCCCCGTTGTCTGTTTT 59.451 50.000 0.00 0.00 0.00 2.43
1620 1982 1.071228 GTACTCCCCCGTTGTCTGTTT 59.929 52.381 0.00 0.00 0.00 2.83
1621 1983 0.683412 GTACTCCCCCGTTGTCTGTT 59.317 55.000 0.00 0.00 0.00 3.16
1622 1984 0.470456 TGTACTCCCCCGTTGTCTGT 60.470 55.000 0.00 0.00 0.00 3.41
1623 1985 0.682852 TTGTACTCCCCCGTTGTCTG 59.317 55.000 0.00 0.00 0.00 3.51
1624 1986 1.426751 TTTGTACTCCCCCGTTGTCT 58.573 50.000 0.00 0.00 0.00 3.41
1625 1987 2.484742 ATTTGTACTCCCCCGTTGTC 57.515 50.000 0.00 0.00 0.00 3.18
1626 1988 2.963599 AATTTGTACTCCCCCGTTGT 57.036 45.000 0.00 0.00 0.00 3.32
1627 1989 3.558418 CGATAATTTGTACTCCCCCGTTG 59.442 47.826 0.00 0.00 0.00 4.10
1628 1990 3.451902 TCGATAATTTGTACTCCCCCGTT 59.548 43.478 0.00 0.00 0.00 4.44
1629 1991 3.033184 TCGATAATTTGTACTCCCCCGT 58.967 45.455 0.00 0.00 0.00 5.28
1630 1992 3.738830 TCGATAATTTGTACTCCCCCG 57.261 47.619 0.00 0.00 0.00 5.73
1631 1993 5.485209 AGATCGATAATTTGTACTCCCCC 57.515 43.478 0.00 0.00 0.00 5.40
1632 1994 7.760340 GTGATAGATCGATAATTTGTACTCCCC 59.240 40.741 0.00 0.00 0.00 4.81
1633 1995 7.760340 GGTGATAGATCGATAATTTGTACTCCC 59.240 40.741 0.00 0.00 0.00 4.30
1634 1996 7.485277 CGGTGATAGATCGATAATTTGTACTCC 59.515 40.741 0.00 0.00 0.00 3.85
1635 1997 8.235226 TCGGTGATAGATCGATAATTTGTACTC 58.765 37.037 0.00 0.00 0.00 2.59
1636 1998 8.107399 TCGGTGATAGATCGATAATTTGTACT 57.893 34.615 0.00 0.00 0.00 2.73
1637 1999 8.799091 CATCGGTGATAGATCGATAATTTGTAC 58.201 37.037 0.00 0.00 40.99 2.90
1665 2027 1.554160 TGCGTTAAGGGGACGGATTAA 59.446 47.619 0.00 0.00 40.66 1.40
1692 2057 4.079212 TCCTCCCCATAATAAGCTGCTTTT 60.079 41.667 21.29 15.65 0.00 2.27
1775 2140 1.322442 ACCAGCTGCTTTCTTCAACC 58.678 50.000 8.66 0.00 0.00 3.77
1778 2143 3.084039 CCATTACCAGCTGCTTTCTTCA 58.916 45.455 8.66 0.00 0.00 3.02
1819 2277 2.918345 GCAGCACGTCATTGGGCAA 61.918 57.895 0.00 0.00 0.00 4.52
1946 2404 4.158394 CCATTTGAATCAAATCGTGAGGGT 59.842 41.667 17.42 0.00 41.40 4.34
1952 2410 5.185635 ACACCATCCATTTGAATCAAATCGT 59.814 36.000 17.42 7.04 41.40 3.73
2006 2464 2.356382 GTGATCTGTGGAGACCTCGTAG 59.644 54.545 0.00 0.00 0.00 3.51
2222 2680 0.527565 AGCAAATGCATCCGGACAAC 59.472 50.000 6.12 0.00 45.16 3.32
2317 2775 4.503714 AGAAAGACAAGAACTCCAACCA 57.496 40.909 0.00 0.00 0.00 3.67
2936 9396 3.399330 TCACATCCGTTTTCTTGGAGAC 58.601 45.455 0.00 0.00 37.76 3.36
3132 10824 3.056328 GCGCCACCTGAGGAAACC 61.056 66.667 4.99 0.00 0.00 3.27
3225 10917 4.565652 GGAAGTGAATAACAGGAGAAGCCA 60.566 45.833 0.00 0.00 40.02 4.75
3427 11331 0.719465 ATAAGCACGTTACTGCACGC 59.281 50.000 8.85 0.00 44.37 5.34
3513 11434 4.973168 TGAAAAATAGAGAGTGCTGTGGT 58.027 39.130 0.00 0.00 0.00 4.16
3518 11439 5.645497 GTGTCCATGAAAAATAGAGAGTGCT 59.355 40.000 0.00 0.00 0.00 4.40
3666 11587 4.572795 CCCTCCGAAAAGAAATAGAAGAGC 59.427 45.833 0.00 0.00 0.00 4.09
3682 11603 0.472471 AAAGTTTGTGCTCCCTCCGA 59.528 50.000 0.00 0.00 0.00 4.55
3788 11780 3.267860 GAGCTGCTCCCGAATGCG 61.268 66.667 18.80 0.00 37.24 4.73
3910 11910 1.967762 CACAAATAGCCAACGTGCAG 58.032 50.000 0.36 0.00 0.00 4.41
4103 12110 3.599343 TGTCTCATCCAAAATCAGGTCG 58.401 45.455 0.00 0.00 0.00 4.79
4201 12209 1.134946 GAATCATGCGTTCCAAAGGGG 59.865 52.381 0.00 0.00 38.37 4.79
4445 12465 4.545823 TGTGAACATCGTGAAAAGGAAC 57.454 40.909 0.00 0.00 0.00 3.62
4447 12467 6.869315 TTTATGTGAACATCGTGAAAAGGA 57.131 33.333 0.00 0.00 37.76 3.36
4448 12468 8.519492 AATTTTATGTGAACATCGTGAAAAGG 57.481 30.769 0.00 0.00 37.76 3.11
4453 12473 9.605955 CTGTAAAATTTTATGTGAACATCGTGA 57.394 29.630 13.54 0.00 37.76 4.35
4479 12499 8.900983 ATTTCTTATCTGGAGATTTGAGCTAC 57.099 34.615 0.00 0.00 36.05 3.58
4497 12517 5.820947 GGCGAGGAATCCTACAAATTTCTTA 59.179 40.000 0.00 0.00 31.76 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.