Multiple sequence alignment - TraesCS6D01G381500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G381500 chr6D 100.000 4078 0 0 1 4078 461922764 461926841 0.000000e+00 7531.0
1 TraesCS6D01G381500 chr6D 85.095 899 127 6 1333 2225 462014301 462013404 0.000000e+00 911.0
2 TraesCS6D01G381500 chr6D 85.243 576 81 3 2262 2834 462013409 462012835 1.260000e-164 590.0
3 TraesCS6D01G381500 chr6D 77.984 377 51 24 745 1101 461856590 461856226 1.490000e-49 207.0
4 TraesCS6D01G381500 chr6D 95.349 43 2 0 2940 2982 436759080 436759038 7.310000e-08 69.4
5 TraesCS6D01G381500 chr6B 91.462 2975 129 45 459 3373 704186593 704189502 0.000000e+00 3971.0
6 TraesCS6D01G381500 chr6B 85.227 1496 198 13 1333 2822 704177955 704176477 0.000000e+00 1517.0
7 TraesCS6D01G381500 chr6B 78.769 2308 355 88 627 2870 704305416 704303180 0.000000e+00 1423.0
8 TraesCS6D01G381500 chr6B 82.936 1594 229 25 1210 2796 704372257 704373814 0.000000e+00 1397.0
9 TraesCS6D01G381500 chr6B 84.889 900 127 8 1333 2225 704183898 704183001 0.000000e+00 900.0
10 TraesCS6D01G381500 chr6B 84.722 576 84 3 2262 2834 704183006 704182432 1.270000e-159 573.0
11 TraesCS6D01G381500 chr6B 85.075 469 43 8 459 927 704437977 704438418 1.730000e-123 453.0
12 TraesCS6D01G381500 chr6B 88.983 118 13 0 3387 3504 704189490 704189607 3.280000e-31 147.0
13 TraesCS6D01G381500 chr6B 95.714 70 3 0 3482 3551 704191043 704191112 3.330000e-21 113.0
14 TraesCS6D01G381500 chr6A 95.796 2260 74 9 860 3116 608709721 608711962 0.000000e+00 3627.0
15 TraesCS6D01G381500 chr6A 93.836 1168 70 2 860 2026 608967374 608968540 0.000000e+00 1757.0
16 TraesCS6D01G381500 chr6A 85.497 1510 199 12 1333 2836 608902302 608900807 0.000000e+00 1557.0
17 TraesCS6D01G381500 chr6A 83.126 1606 232 21 1210 2810 608978314 608979885 0.000000e+00 1428.0
18 TraesCS6D01G381500 chr6A 85.085 885 126 6 1345 2225 608861090 608860208 0.000000e+00 898.0
19 TraesCS6D01G381500 chr6A 93.632 424 21 3 3191 3609 608712017 608712439 2.680000e-176 628.0
20 TraesCS6D01G381500 chr6A 93.766 401 14 4 440 836 608966984 608967377 3.510000e-165 592.0
21 TraesCS6D01G381500 chr6A 87.048 525 47 6 459 983 609002497 609003000 1.270000e-159 573.0
22 TraesCS6D01G381500 chr6A 92.612 379 21 1 458 836 608709353 608709724 4.640000e-149 538.0
23 TraesCS6D01G381500 chr6A 93.478 184 9 2 3674 3857 608714685 608714865 1.870000e-68 270.0
24 TraesCS6D01G381500 chr6A 90.217 184 14 4 3862 4043 608715873 608716054 1.890000e-58 237.0
25 TraesCS6D01G381500 chr6A 85.542 83 9 2 2898 2979 29293116 29293196 2.610000e-12 84.2
26 TraesCS6D01G381500 chr6A 97.436 39 1 0 2942 2980 307208827 307208789 2.630000e-07 67.6
27 TraesCS6D01G381500 chr6A 76.692 133 21 10 308 435 593564192 593564319 9.460000e-07 65.8
28 TraesCS6D01G381500 chr5B 85.037 1497 196 13 1345 2836 65588110 65586637 0.000000e+00 1498.0
29 TraesCS6D01G381500 chr5B 86.822 258 33 1 726 983 65770987 65771243 1.850000e-73 287.0
30 TraesCS6D01G381500 chr5B 88.000 75 8 1 3531 3605 194185164 194185091 2.020000e-13 87.9
31 TraesCS6D01G381500 chr1A 89.865 444 43 2 1 443 341945616 341946058 1.640000e-158 569.0
32 TraesCS6D01G381500 chr1A 95.161 62 2 1 3547 3607 402259179 402259118 3.360000e-16 97.1
33 TraesCS6D01G381500 chr3D 83.111 450 62 12 1 443 61758090 61758532 8.210000e-107 398.0
34 TraesCS6D01G381500 chr3D 96.552 58 2 0 3550 3607 91710928 91710871 3.360000e-16 97.1
35 TraesCS6D01G381500 chr3D 95.000 60 3 0 3548 3607 128214005 128214064 1.210000e-15 95.3
36 TraesCS6D01G381500 chr3D 100.000 30 0 0 2951 2980 299347701 299347730 5.690000e-04 56.5
37 TraesCS6D01G381500 chr7D 82.550 447 71 7 1 443 462681143 462680700 1.780000e-103 387.0
38 TraesCS6D01G381500 chr2A 80.493 446 71 14 1 438 767820467 767820030 1.090000e-85 327.0
39 TraesCS6D01G381500 chr4A 81.491 389 67 5 58 443 586477824 586477438 8.510000e-82 315.0
40 TraesCS6D01G381500 chr4A 79.845 129 14 11 316 437 687019680 687019803 2.610000e-12 84.2
41 TraesCS6D01G381500 chr1B 96.721 61 2 0 3547 3607 7916807 7916867 7.210000e-18 102.0
42 TraesCS6D01G381500 chr5A 95.000 60 3 0 3548 3607 37998726 37998667 1.210000e-15 95.3
43 TraesCS6D01G381500 chr5A 87.302 63 3 5 383 443 332722598 332722539 2.630000e-07 67.6
44 TraesCS6D01G381500 chr2B 88.608 79 8 1 2902 2979 69342420 69342498 1.210000e-15 95.3
45 TraesCS6D01G381500 chr2B 100.000 32 0 0 2949 2980 236459164 236459195 4.400000e-05 60.2
46 TraesCS6D01G381500 chr4D 94.915 59 3 0 3549 3607 310479279 310479337 4.340000e-15 93.5
47 TraesCS6D01G381500 chr4D 95.349 43 2 0 3612 3654 433812488 433812530 7.310000e-08 69.4
48 TraesCS6D01G381500 chr2D 93.651 63 2 2 3547 3607 492655368 492655306 4.340000e-15 93.5
49 TraesCS6D01G381500 chr2D 93.333 45 1 2 3611 3653 598887465 598887509 9.460000e-07 65.8
50 TraesCS6D01G381500 chr2D 86.792 53 5 2 3602 3654 46830969 46831019 1.580000e-04 58.4
51 TraesCS6D01G381500 chr3B 97.619 42 1 0 3612 3653 245508627 245508668 5.650000e-09 73.1
52 TraesCS6D01G381500 chr3B 91.489 47 4 0 3611 3657 789487798 789487844 9.460000e-07 65.8
53 TraesCS6D01G381500 chr7B 95.349 43 2 0 3612 3654 537352142 537352100 7.310000e-08 69.4
54 TraesCS6D01G381500 chrUn 91.489 47 4 0 3611 3657 41734337 41734383 9.460000e-07 65.8
55 TraesCS6D01G381500 chr7A 92.857 42 3 0 3612 3653 91646206 91646165 1.220000e-05 62.1
56 TraesCS6D01G381500 chr7A 100.000 31 0 0 2949 2979 634386494 634386524 1.580000e-04 58.4
57 TraesCS6D01G381500 chr4B 96.970 33 1 0 3621 3653 621075535 621075503 5.690000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G381500 chr6D 461922764 461926841 4077 False 7531.000000 7531 100.0000 1 4078 1 chr6D.!!$F1 4077
1 TraesCS6D01G381500 chr6D 462012835 462014301 1466 True 750.500000 911 85.1690 1333 2834 2 chr6D.!!$R3 1501
2 TraesCS6D01G381500 chr6B 704176477 704177955 1478 True 1517.000000 1517 85.2270 1333 2822 1 chr6B.!!$R1 1489
3 TraesCS6D01G381500 chr6B 704303180 704305416 2236 True 1423.000000 1423 78.7690 627 2870 1 chr6B.!!$R2 2243
4 TraesCS6D01G381500 chr6B 704186593 704191112 4519 False 1410.333333 3971 92.0530 459 3551 3 chr6B.!!$F3 3092
5 TraesCS6D01G381500 chr6B 704372257 704373814 1557 False 1397.000000 1397 82.9360 1210 2796 1 chr6B.!!$F1 1586
6 TraesCS6D01G381500 chr6B 704182432 704183898 1466 True 736.500000 900 84.8055 1333 2834 2 chr6B.!!$R3 1501
7 TraesCS6D01G381500 chr6A 608900807 608902302 1495 True 1557.000000 1557 85.4970 1333 2836 1 chr6A.!!$R3 1503
8 TraesCS6D01G381500 chr6A 608978314 608979885 1571 False 1428.000000 1428 83.1260 1210 2810 1 chr6A.!!$F3 1600
9 TraesCS6D01G381500 chr6A 608966984 608968540 1556 False 1174.500000 1757 93.8010 440 2026 2 chr6A.!!$F6 1586
10 TraesCS6D01G381500 chr6A 608709353 608716054 6701 False 1060.000000 3627 93.1470 458 4043 5 chr6A.!!$F5 3585
11 TraesCS6D01G381500 chr6A 608860208 608861090 882 True 898.000000 898 85.0850 1345 2225 1 chr6A.!!$R2 880
12 TraesCS6D01G381500 chr6A 609002497 609003000 503 False 573.000000 573 87.0480 459 983 1 chr6A.!!$F4 524
13 TraesCS6D01G381500 chr5B 65586637 65588110 1473 True 1498.000000 1498 85.0370 1345 2836 1 chr5B.!!$R1 1491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.027716 CGTAGATCACGTCGTCCAGG 59.972 60.000 0.00 0.00 45.82 4.45 F
179 180 0.034670 ATCCTCTTTGTCCCAGCAGC 60.035 55.000 0.00 0.00 0.00 5.25 F
367 368 0.101399 CCGATCGTTCCAGAGGTGAG 59.899 60.000 15.09 0.00 0.00 3.51 F
375 376 0.106469 TCCAGAGGTGAGATCGAGGG 60.106 60.000 0.00 0.00 0.00 4.30 F
921 976 0.179065 AGTAAATCGGCCGGCTTACC 60.179 55.000 30.32 19.77 0.00 2.85 F
2364 2462 1.608025 CCGAAAGTGCTTGCTCCTGTA 60.608 52.381 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2088 2.170166 GCCAATCACCAAAGGTCATCA 58.830 47.619 0.00 0.00 31.02 3.07 R
2061 2150 3.151912 AGCAAGACTGAGCTTGGAAAT 57.848 42.857 15.03 0.00 44.17 2.17 R
2364 2462 2.031508 CACAAACCGTAATTTGGCGAGT 60.032 45.455 8.39 0.00 42.74 4.18 R
2520 2618 4.136796 CCCACTTCACATCTGTTTTCTCA 58.863 43.478 0.00 0.00 0.00 3.27 R
2851 2949 1.541588 GCTCCTTCCAACCACATTCAC 59.458 52.381 0.00 0.00 0.00 3.18 R
3669 7496 0.366871 CGAGCGGTTCTGATCAAACG 59.633 55.000 0.34 0.34 39.59 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.409218 CCAAGCAGCGCGCACATT 62.409 61.111 35.10 20.73 46.13 2.71
18 19 2.872925 CAAGCAGCGCGCACATTC 60.873 61.111 35.10 16.26 46.13 2.67
19 20 3.052082 AAGCAGCGCGCACATTCT 61.052 55.556 35.10 18.29 46.13 2.40
20 21 2.620112 AAGCAGCGCGCACATTCTT 61.620 52.632 35.10 22.72 46.13 2.52
21 22 2.791396 AAGCAGCGCGCACATTCTTG 62.791 55.000 35.10 21.48 46.13 3.02
22 23 2.557805 CAGCGCGCACATTCTTGT 59.442 55.556 35.10 5.73 36.15 3.16
23 24 1.787215 CAGCGCGCACATTCTTGTA 59.213 52.632 35.10 0.00 33.76 2.41
24 25 0.247419 CAGCGCGCACATTCTTGTAG 60.247 55.000 35.10 3.70 33.76 2.74
25 26 0.389817 AGCGCGCACATTCTTGTAGA 60.390 50.000 35.10 0.00 33.76 2.59
26 27 0.442310 GCGCGCACATTCTTGTAGAA 59.558 50.000 29.10 0.00 38.78 2.10
27 28 1.786928 GCGCGCACATTCTTGTAGAAC 60.787 52.381 29.10 0.00 37.00 3.01
28 29 1.524986 CGCGCACATTCTTGTAGAACG 60.525 52.381 8.75 0.00 37.00 3.95
29 30 1.724623 GCGCACATTCTTGTAGAACGA 59.275 47.619 0.30 0.00 37.00 3.85
30 31 2.156891 GCGCACATTCTTGTAGAACGAA 59.843 45.455 0.30 0.00 37.00 3.85
31 32 3.181520 GCGCACATTCTTGTAGAACGAAT 60.182 43.478 0.30 0.00 37.00 3.34
32 33 4.032445 GCGCACATTCTTGTAGAACGAATA 59.968 41.667 0.30 0.00 37.00 1.75
33 34 5.481472 CGCACATTCTTGTAGAACGAATAC 58.519 41.667 0.00 0.00 37.00 1.89
34 35 5.288712 CGCACATTCTTGTAGAACGAATACT 59.711 40.000 0.00 0.00 37.00 2.12
35 36 6.470160 GCACATTCTTGTAGAACGAATACTG 58.530 40.000 0.00 0.00 37.00 2.74
36 37 6.310467 GCACATTCTTGTAGAACGAATACTGA 59.690 38.462 0.00 0.00 37.00 3.41
37 38 7.667283 CACATTCTTGTAGAACGAATACTGAC 58.333 38.462 0.00 0.00 37.00 3.51
38 39 7.542477 CACATTCTTGTAGAACGAATACTGACT 59.458 37.037 0.00 0.00 37.00 3.41
39 40 7.542477 ACATTCTTGTAGAACGAATACTGACTG 59.458 37.037 0.00 0.61 37.00 3.51
40 41 6.570672 TCTTGTAGAACGAATACTGACTGT 57.429 37.500 0.00 0.00 0.00 3.55
41 42 7.677454 TCTTGTAGAACGAATACTGACTGTA 57.323 36.000 0.00 0.00 35.37 2.74
42 43 8.277490 TCTTGTAGAACGAATACTGACTGTAT 57.723 34.615 0.00 0.00 43.19 2.29
43 44 8.182227 TCTTGTAGAACGAATACTGACTGTATG 58.818 37.037 5.83 0.00 40.69 2.39
44 45 7.387119 TGTAGAACGAATACTGACTGTATGT 57.613 36.000 5.83 0.00 40.69 2.29
45 46 7.823665 TGTAGAACGAATACTGACTGTATGTT 58.176 34.615 5.83 6.78 40.69 2.71
46 47 8.301720 TGTAGAACGAATACTGACTGTATGTTT 58.698 33.333 5.83 0.95 40.69 2.83
47 48 9.136952 GTAGAACGAATACTGACTGTATGTTTT 57.863 33.333 5.83 5.34 40.69 2.43
48 49 8.018677 AGAACGAATACTGACTGTATGTTTTG 57.981 34.615 5.83 0.00 40.69 2.44
49 50 7.656137 AGAACGAATACTGACTGTATGTTTTGT 59.344 33.333 5.83 0.07 40.69 2.83
50 51 7.724305 ACGAATACTGACTGTATGTTTTGTT 57.276 32.000 5.83 0.00 40.69 2.83
51 52 7.572759 ACGAATACTGACTGTATGTTTTGTTG 58.427 34.615 5.83 0.00 40.69 3.33
52 53 7.439955 ACGAATACTGACTGTATGTTTTGTTGA 59.560 33.333 5.83 0.00 40.69 3.18
53 54 8.443160 CGAATACTGACTGTATGTTTTGTTGAT 58.557 33.333 5.83 0.00 40.69 2.57
57 58 7.530010 ACTGACTGTATGTTTTGTTGATATGC 58.470 34.615 0.00 0.00 0.00 3.14
58 59 7.174772 ACTGACTGTATGTTTTGTTGATATGCA 59.825 33.333 0.00 0.00 0.00 3.96
59 60 7.304735 TGACTGTATGTTTTGTTGATATGCAC 58.695 34.615 0.00 0.00 0.00 4.57
60 61 6.620678 ACTGTATGTTTTGTTGATATGCACC 58.379 36.000 0.00 0.00 0.00 5.01
61 62 5.960113 TGTATGTTTTGTTGATATGCACCC 58.040 37.500 0.00 0.00 0.00 4.61
62 63 5.478332 TGTATGTTTTGTTGATATGCACCCA 59.522 36.000 0.00 0.00 0.00 4.51
63 64 4.250116 TGTTTTGTTGATATGCACCCAC 57.750 40.909 0.00 0.00 0.00 4.61
64 65 3.241701 GTTTTGTTGATATGCACCCACG 58.758 45.455 0.00 0.00 0.00 4.94
65 66 0.808125 TTGTTGATATGCACCCACGC 59.192 50.000 0.00 0.00 0.00 5.34
66 67 1.029408 TGTTGATATGCACCCACGCC 61.029 55.000 0.00 0.00 0.00 5.68
67 68 1.029408 GTTGATATGCACCCACGCCA 61.029 55.000 0.00 0.00 0.00 5.69
68 69 1.029408 TTGATATGCACCCACGCCAC 61.029 55.000 0.00 0.00 0.00 5.01
69 70 1.451207 GATATGCACCCACGCCACA 60.451 57.895 0.00 0.00 0.00 4.17
70 71 1.439353 GATATGCACCCACGCCACAG 61.439 60.000 0.00 0.00 0.00 3.66
81 82 3.728474 GCCACAGCGATCCATCTG 58.272 61.111 0.00 3.55 36.45 2.90
82 83 1.890979 GCCACAGCGATCCATCTGG 60.891 63.158 8.54 0.00 34.76 3.86
83 84 1.524002 CCACAGCGATCCATCTGGT 59.476 57.895 8.54 0.00 34.76 4.00
84 85 0.531532 CCACAGCGATCCATCTGGTC 60.532 60.000 8.54 0.00 34.76 4.02
85 86 0.873312 CACAGCGATCCATCTGGTCG 60.873 60.000 13.40 13.40 39.76 4.79
86 87 1.037579 ACAGCGATCCATCTGGTCGA 61.038 55.000 18.80 0.00 39.41 4.20
87 88 0.103026 CAGCGATCCATCTGGTCGAA 59.897 55.000 18.80 0.00 39.41 3.71
88 89 1.043816 AGCGATCCATCTGGTCGAAT 58.956 50.000 18.80 8.44 39.41 3.34
89 90 1.000283 AGCGATCCATCTGGTCGAATC 60.000 52.381 18.80 5.77 39.41 2.52
90 91 1.000283 GCGATCCATCTGGTCGAATCT 60.000 52.381 18.80 0.00 39.41 2.40
91 92 2.670479 CGATCCATCTGGTCGAATCTG 58.330 52.381 12.76 0.00 39.41 2.90
92 93 2.608998 CGATCCATCTGGTCGAATCTGG 60.609 54.545 12.76 0.00 39.41 3.86
93 94 1.866015 TCCATCTGGTCGAATCTGGT 58.134 50.000 0.00 0.00 36.34 4.00
94 95 1.482182 TCCATCTGGTCGAATCTGGTG 59.518 52.381 0.00 0.00 36.34 4.17
95 96 1.473965 CCATCTGGTCGAATCTGGTGG 60.474 57.143 10.34 10.34 0.00 4.61
96 97 1.208052 CATCTGGTCGAATCTGGTGGT 59.792 52.381 0.00 0.00 0.00 4.16
97 98 0.608130 TCTGGTCGAATCTGGTGGTG 59.392 55.000 0.00 0.00 0.00 4.17
98 99 1.003839 TGGTCGAATCTGGTGGTGC 60.004 57.895 0.00 0.00 0.00 5.01
99 100 1.745489 GGTCGAATCTGGTGGTGCC 60.745 63.158 0.00 0.00 37.90 5.01
100 101 1.296715 GTCGAATCTGGTGGTGCCT 59.703 57.895 0.00 0.00 38.35 4.75
101 102 0.741221 GTCGAATCTGGTGGTGCCTC 60.741 60.000 0.00 0.00 38.35 4.70
102 103 0.904865 TCGAATCTGGTGGTGCCTCT 60.905 55.000 0.00 0.00 38.35 3.69
103 104 0.036010 CGAATCTGGTGGTGCCTCTT 60.036 55.000 0.00 0.00 38.35 2.85
104 105 1.611673 CGAATCTGGTGGTGCCTCTTT 60.612 52.381 0.00 0.00 38.35 2.52
105 106 2.087646 GAATCTGGTGGTGCCTCTTTC 58.912 52.381 0.00 0.00 38.35 2.62
106 107 1.366319 ATCTGGTGGTGCCTCTTTCT 58.634 50.000 0.00 0.00 38.35 2.52
107 108 0.687354 TCTGGTGGTGCCTCTTTCTC 59.313 55.000 0.00 0.00 38.35 2.87
108 109 0.671781 CTGGTGGTGCCTCTTTCTCG 60.672 60.000 0.00 0.00 38.35 4.04
109 110 1.371558 GGTGGTGCCTCTTTCTCGT 59.628 57.895 0.00 0.00 0.00 4.18
110 111 0.670854 GGTGGTGCCTCTTTCTCGTC 60.671 60.000 0.00 0.00 0.00 4.20
111 112 1.009389 GTGGTGCCTCTTTCTCGTCG 61.009 60.000 0.00 0.00 0.00 5.12
112 113 1.289380 GGTGCCTCTTTCTCGTCGT 59.711 57.895 0.00 0.00 0.00 4.34
113 114 0.524862 GGTGCCTCTTTCTCGTCGTA 59.475 55.000 0.00 0.00 0.00 3.43
114 115 1.467713 GGTGCCTCTTTCTCGTCGTAG 60.468 57.143 0.00 0.00 0.00 3.51
115 116 1.467734 GTGCCTCTTTCTCGTCGTAGA 59.532 52.381 0.00 0.00 0.00 2.59
116 117 2.097791 GTGCCTCTTTCTCGTCGTAGAT 59.902 50.000 0.00 0.00 40.67 1.98
117 118 2.355132 TGCCTCTTTCTCGTCGTAGATC 59.645 50.000 0.00 0.00 40.67 2.75
118 119 2.355132 GCCTCTTTCTCGTCGTAGATCA 59.645 50.000 0.00 0.00 40.67 2.92
119 120 3.789459 GCCTCTTTCTCGTCGTAGATCAC 60.789 52.174 0.00 0.00 40.67 3.06
128 129 3.511012 CGTAGATCACGTCGTCCAG 57.489 57.895 0.00 0.00 45.82 3.86
129 130 0.027716 CGTAGATCACGTCGTCCAGG 59.972 60.000 0.00 0.00 45.82 4.45
130 131 1.093159 GTAGATCACGTCGTCCAGGT 58.907 55.000 0.00 0.00 0.00 4.00
131 132 1.063764 GTAGATCACGTCGTCCAGGTC 59.936 57.143 0.00 0.00 0.00 3.85
132 133 1.139095 GATCACGTCGTCCAGGTCC 59.861 63.158 0.00 0.00 0.00 4.46
133 134 1.304217 ATCACGTCGTCCAGGTCCT 60.304 57.895 0.00 0.00 0.00 3.85
134 135 1.313812 ATCACGTCGTCCAGGTCCTC 61.314 60.000 0.00 0.00 0.00 3.71
135 136 1.972223 CACGTCGTCCAGGTCCTCT 60.972 63.158 0.00 0.00 0.00 3.69
136 137 1.228490 ACGTCGTCCAGGTCCTCTT 60.228 57.895 0.00 0.00 0.00 2.85
137 138 1.242665 ACGTCGTCCAGGTCCTCTTC 61.243 60.000 0.00 0.00 0.00 2.87
138 139 1.507174 GTCGTCCAGGTCCTCTTCG 59.493 63.158 0.00 0.00 0.00 3.79
139 140 2.182030 CGTCCAGGTCCTCTTCGC 59.818 66.667 0.00 0.00 0.00 4.70
140 141 2.182030 GTCCAGGTCCTCTTCGCG 59.818 66.667 0.00 0.00 0.00 5.87
141 142 3.068691 TCCAGGTCCTCTTCGCGG 61.069 66.667 6.13 0.00 0.00 6.46
142 143 3.068691 CCAGGTCCTCTTCGCGGA 61.069 66.667 6.13 0.00 0.00 5.54
143 144 2.492090 CAGGTCCTCTTCGCGGAG 59.508 66.667 8.54 8.54 0.00 4.63
160 161 4.802051 GCCCAAGCTCCGCCATCA 62.802 66.667 0.00 0.00 35.50 3.07
161 162 2.194056 CCCAAGCTCCGCCATCAT 59.806 61.111 0.00 0.00 0.00 2.45
162 163 1.895707 CCCAAGCTCCGCCATCATC 60.896 63.158 0.00 0.00 0.00 2.92
163 164 1.895707 CCAAGCTCCGCCATCATCC 60.896 63.158 0.00 0.00 0.00 3.51
164 165 1.147824 CAAGCTCCGCCATCATCCT 59.852 57.895 0.00 0.00 0.00 3.24
165 166 0.883814 CAAGCTCCGCCATCATCCTC 60.884 60.000 0.00 0.00 0.00 3.71
166 167 1.053264 AAGCTCCGCCATCATCCTCT 61.053 55.000 0.00 0.00 0.00 3.69
167 168 1.053264 AGCTCCGCCATCATCCTCTT 61.053 55.000 0.00 0.00 0.00 2.85
168 169 0.179034 GCTCCGCCATCATCCTCTTT 60.179 55.000 0.00 0.00 0.00 2.52
169 170 1.590932 CTCCGCCATCATCCTCTTTG 58.409 55.000 0.00 0.00 0.00 2.77
170 171 0.911769 TCCGCCATCATCCTCTTTGT 59.088 50.000 0.00 0.00 0.00 2.83
171 172 1.134401 TCCGCCATCATCCTCTTTGTC 60.134 52.381 0.00 0.00 0.00 3.18
172 173 1.303309 CGCCATCATCCTCTTTGTCC 58.697 55.000 0.00 0.00 0.00 4.02
173 174 1.685148 GCCATCATCCTCTTTGTCCC 58.315 55.000 0.00 0.00 0.00 4.46
174 175 1.064463 GCCATCATCCTCTTTGTCCCA 60.064 52.381 0.00 0.00 0.00 4.37
175 176 2.928334 CCATCATCCTCTTTGTCCCAG 58.072 52.381 0.00 0.00 0.00 4.45
176 177 2.295885 CATCATCCTCTTTGTCCCAGC 58.704 52.381 0.00 0.00 0.00 4.85
177 178 1.361204 TCATCCTCTTTGTCCCAGCA 58.639 50.000 0.00 0.00 0.00 4.41
178 179 1.280133 TCATCCTCTTTGTCCCAGCAG 59.720 52.381 0.00 0.00 0.00 4.24
179 180 0.034670 ATCCTCTTTGTCCCAGCAGC 60.035 55.000 0.00 0.00 0.00 5.25
180 181 2.037136 CCTCTTTGTCCCAGCAGCG 61.037 63.158 0.00 0.00 0.00 5.18
181 182 2.032528 TCTTTGTCCCAGCAGCGG 59.967 61.111 0.00 0.00 0.00 5.52
189 190 4.335647 CCAGCAGCGGGGTCAACT 62.336 66.667 3.10 0.00 0.00 3.16
190 191 2.743928 CAGCAGCGGGGTCAACTC 60.744 66.667 0.00 0.00 0.00 3.01
191 192 4.021925 AGCAGCGGGGTCAACTCC 62.022 66.667 0.00 0.00 0.00 3.85
193 194 4.760047 CAGCGGGGTCAACTCCGG 62.760 72.222 22.14 3.54 45.75 5.14
195 196 4.754667 GCGGGGTCAACTCCGGAC 62.755 72.222 22.14 3.54 45.75 4.79
196 197 4.430765 CGGGGTCAACTCCGGACG 62.431 72.222 13.74 0.00 42.32 4.79
197 198 3.308705 GGGGTCAACTCCGGACGT 61.309 66.667 0.00 0.00 36.12 4.34
198 199 1.978617 GGGGTCAACTCCGGACGTA 60.979 63.158 0.00 0.00 36.12 3.57
199 200 1.325476 GGGGTCAACTCCGGACGTAT 61.325 60.000 0.00 0.00 36.12 3.06
200 201 0.533951 GGGTCAACTCCGGACGTATT 59.466 55.000 0.00 0.00 36.12 1.89
201 202 1.066645 GGGTCAACTCCGGACGTATTT 60.067 52.381 0.00 0.00 36.12 1.40
202 203 1.997606 GGTCAACTCCGGACGTATTTG 59.002 52.381 0.00 0.00 36.12 2.32
203 204 1.392510 GTCAACTCCGGACGTATTTGC 59.607 52.381 0.00 0.00 0.00 3.68
204 205 0.725117 CAACTCCGGACGTATTTGCC 59.275 55.000 0.00 0.00 0.00 4.52
205 206 0.738412 AACTCCGGACGTATTTGCCG 60.738 55.000 0.00 5.69 44.42 5.69
209 210 2.699212 GGACGTATTTGCCGACGC 59.301 61.111 0.00 0.00 42.81 5.19
210 211 1.808390 GGACGTATTTGCCGACGCT 60.808 57.895 0.00 0.00 42.81 5.07
211 212 0.526096 GGACGTATTTGCCGACGCTA 60.526 55.000 0.00 0.00 42.81 4.26
212 213 1.270971 GACGTATTTGCCGACGCTAA 58.729 50.000 0.00 0.00 42.81 3.09
213 214 1.655099 GACGTATTTGCCGACGCTAAA 59.345 47.619 0.00 0.00 42.81 1.85
214 215 1.391144 ACGTATTTGCCGACGCTAAAC 59.609 47.619 0.00 0.00 42.81 2.01
215 216 1.657094 CGTATTTGCCGACGCTAAACT 59.343 47.619 0.00 0.00 33.43 2.66
216 217 2.853594 CGTATTTGCCGACGCTAAACTA 59.146 45.455 0.00 0.00 33.43 2.24
217 218 3.488310 CGTATTTGCCGACGCTAAACTAT 59.512 43.478 0.00 0.00 33.43 2.12
218 219 4.026310 CGTATTTGCCGACGCTAAACTATT 60.026 41.667 0.00 0.00 33.43 1.73
219 220 4.531659 ATTTGCCGACGCTAAACTATTC 57.468 40.909 0.00 0.00 33.43 1.75
220 221 1.552226 TGCCGACGCTAAACTATTCG 58.448 50.000 0.00 0.00 35.36 3.34
221 222 0.228994 GCCGACGCTAAACTATTCGC 59.771 55.000 0.00 0.00 0.00 4.70
222 223 1.836383 CCGACGCTAAACTATTCGCT 58.164 50.000 0.00 0.00 0.00 4.93
223 224 1.517276 CCGACGCTAAACTATTCGCTG 59.483 52.381 0.00 0.00 0.00 5.18
224 225 1.072089 CGACGCTAAACTATTCGCTGC 60.072 52.381 0.00 0.00 0.00 5.25
225 226 1.258197 GACGCTAAACTATTCGCTGCC 59.742 52.381 0.00 0.00 0.00 4.85
226 227 1.286501 CGCTAAACTATTCGCTGCCA 58.713 50.000 0.00 0.00 0.00 4.92
227 228 1.867233 CGCTAAACTATTCGCTGCCAT 59.133 47.619 0.00 0.00 0.00 4.40
228 229 3.057019 CGCTAAACTATTCGCTGCCATA 58.943 45.455 0.00 0.00 0.00 2.74
229 230 3.120991 CGCTAAACTATTCGCTGCCATAC 60.121 47.826 0.00 0.00 0.00 2.39
230 231 4.058817 GCTAAACTATTCGCTGCCATACT 58.941 43.478 0.00 0.00 0.00 2.12
231 232 4.150804 GCTAAACTATTCGCTGCCATACTC 59.849 45.833 0.00 0.00 0.00 2.59
232 233 2.423926 ACTATTCGCTGCCATACTCG 57.576 50.000 0.00 0.00 0.00 4.18
233 234 1.954382 ACTATTCGCTGCCATACTCGA 59.046 47.619 0.00 0.00 0.00 4.04
234 235 2.361119 ACTATTCGCTGCCATACTCGAA 59.639 45.455 0.00 0.00 43.64 3.71
235 236 2.309528 ATTCGCTGCCATACTCGAAA 57.690 45.000 0.00 0.00 42.91 3.46
236 237 1.355971 TTCGCTGCCATACTCGAAAC 58.644 50.000 0.00 0.00 37.90 2.78
237 238 0.459585 TCGCTGCCATACTCGAAACC 60.460 55.000 0.00 0.00 0.00 3.27
238 239 1.429148 CGCTGCCATACTCGAAACCC 61.429 60.000 0.00 0.00 0.00 4.11
239 240 0.107654 GCTGCCATACTCGAAACCCT 60.108 55.000 0.00 0.00 0.00 4.34
240 241 1.138266 GCTGCCATACTCGAAACCCTA 59.862 52.381 0.00 0.00 0.00 3.53
241 242 2.419574 GCTGCCATACTCGAAACCCTAA 60.420 50.000 0.00 0.00 0.00 2.69
242 243 3.195661 CTGCCATACTCGAAACCCTAAC 58.804 50.000 0.00 0.00 0.00 2.34
243 244 2.093341 TGCCATACTCGAAACCCTAACC 60.093 50.000 0.00 0.00 0.00 2.85
244 245 2.744166 GCCATACTCGAAACCCTAACCC 60.744 54.545 0.00 0.00 0.00 4.11
245 246 2.482490 CCATACTCGAAACCCTAACCCG 60.482 54.545 0.00 0.00 0.00 5.28
246 247 2.214376 TACTCGAAACCCTAACCCGA 57.786 50.000 0.00 0.00 0.00 5.14
247 248 1.565067 ACTCGAAACCCTAACCCGAT 58.435 50.000 0.00 0.00 0.00 4.18
248 249 1.904537 ACTCGAAACCCTAACCCGATT 59.095 47.619 0.00 0.00 0.00 3.34
249 250 2.303890 ACTCGAAACCCTAACCCGATTT 59.696 45.455 0.00 0.00 0.00 2.17
250 251 3.244665 ACTCGAAACCCTAACCCGATTTT 60.245 43.478 0.00 0.00 0.00 1.82
251 252 4.020307 ACTCGAAACCCTAACCCGATTTTA 60.020 41.667 0.00 0.00 0.00 1.52
252 253 4.506758 TCGAAACCCTAACCCGATTTTAG 58.493 43.478 0.00 0.00 0.00 1.85
253 254 4.222588 TCGAAACCCTAACCCGATTTTAGA 59.777 41.667 0.00 0.00 0.00 2.10
254 255 4.569564 CGAAACCCTAACCCGATTTTAGAG 59.430 45.833 0.00 0.00 0.00 2.43
255 256 3.555527 ACCCTAACCCGATTTTAGAGC 57.444 47.619 0.00 0.00 0.00 4.09
256 257 2.172082 ACCCTAACCCGATTTTAGAGCC 59.828 50.000 0.00 0.00 0.00 4.70
257 258 2.171870 CCCTAACCCGATTTTAGAGCCA 59.828 50.000 0.00 0.00 0.00 4.75
258 259 3.371166 CCCTAACCCGATTTTAGAGCCAA 60.371 47.826 0.00 0.00 0.00 4.52
259 260 3.626217 CCTAACCCGATTTTAGAGCCAAC 59.374 47.826 0.00 0.00 0.00 3.77
260 261 2.124277 ACCCGATTTTAGAGCCAACC 57.876 50.000 0.00 0.00 0.00 3.77
261 262 1.014352 CCCGATTTTAGAGCCAACCG 58.986 55.000 0.00 0.00 0.00 4.44
262 263 1.014352 CCGATTTTAGAGCCAACCGG 58.986 55.000 0.00 0.00 0.00 5.28
263 264 1.014352 CGATTTTAGAGCCAACCGGG 58.986 55.000 6.32 0.00 40.85 5.73
265 266 2.419021 CGATTTTAGAGCCAACCGGGTA 60.419 50.000 6.32 0.00 45.28 3.69
266 267 3.743269 CGATTTTAGAGCCAACCGGGTAT 60.743 47.826 6.32 0.00 45.28 2.73
267 268 3.724732 TTTTAGAGCCAACCGGGTATT 57.275 42.857 6.32 0.00 45.28 1.89
268 269 2.702592 TTAGAGCCAACCGGGTATTG 57.297 50.000 6.32 0.46 45.28 1.90
269 270 0.834612 TAGAGCCAACCGGGTATTGG 59.165 55.000 16.17 16.17 45.28 3.16
276 277 3.842732 CAACCGGGTATTGGAAAGAAC 57.157 47.619 6.32 0.00 0.00 3.01
277 278 2.490509 CAACCGGGTATTGGAAAGAACC 59.509 50.000 6.32 0.00 42.84 3.62
278 279 1.005097 ACCGGGTATTGGAAAGAACCC 59.995 52.381 6.32 0.00 43.54 4.11
279 280 1.283905 CCGGGTATTGGAAAGAACCCT 59.716 52.381 7.73 0.00 43.54 4.34
280 281 2.506644 CCGGGTATTGGAAAGAACCCTA 59.493 50.000 7.73 0.00 43.54 3.53
281 282 3.054213 CCGGGTATTGGAAAGAACCCTAA 60.054 47.826 7.73 0.00 43.54 2.69
282 283 4.385977 CCGGGTATTGGAAAGAACCCTAAT 60.386 45.833 7.73 0.00 43.54 1.73
283 284 4.820173 CGGGTATTGGAAAGAACCCTAATC 59.180 45.833 7.73 0.00 43.54 1.75
284 285 5.138276 GGGTATTGGAAAGAACCCTAATCC 58.862 45.833 2.07 0.00 46.95 3.01
285 286 5.138276 GGTATTGGAAAGAACCCTAATCCC 58.862 45.833 0.00 0.00 31.48 3.85
286 287 5.103643 GGTATTGGAAAGAACCCTAATCCCT 60.104 44.000 0.00 0.00 31.48 4.20
287 288 5.552430 ATTGGAAAGAACCCTAATCCCTT 57.448 39.130 0.00 0.00 31.15 3.95
288 289 4.586306 TGGAAAGAACCCTAATCCCTTC 57.414 45.455 0.00 0.00 31.15 3.46
289 290 3.920197 TGGAAAGAACCCTAATCCCTTCA 59.080 43.478 0.00 0.00 31.15 3.02
290 291 4.263771 TGGAAAGAACCCTAATCCCTTCAC 60.264 45.833 0.00 0.00 31.15 3.18
291 292 4.270834 GAAAGAACCCTAATCCCTTCACC 58.729 47.826 0.00 0.00 0.00 4.02
292 293 3.222394 AGAACCCTAATCCCTTCACCT 57.778 47.619 0.00 0.00 0.00 4.00
293 294 4.363546 AGAACCCTAATCCCTTCACCTA 57.636 45.455 0.00 0.00 0.00 3.08
294 295 4.038633 AGAACCCTAATCCCTTCACCTAC 58.961 47.826 0.00 0.00 0.00 3.18
295 296 3.502051 ACCCTAATCCCTTCACCTACA 57.498 47.619 0.00 0.00 0.00 2.74
296 297 3.810623 ACCCTAATCCCTTCACCTACAA 58.189 45.455 0.00 0.00 0.00 2.41
297 298 4.380791 ACCCTAATCCCTTCACCTACAAT 58.619 43.478 0.00 0.00 0.00 2.71
298 299 4.794067 ACCCTAATCCCTTCACCTACAATT 59.206 41.667 0.00 0.00 0.00 2.32
299 300 5.133221 CCCTAATCCCTTCACCTACAATTG 58.867 45.833 3.24 3.24 0.00 2.32
300 301 5.133221 CCTAATCCCTTCACCTACAATTGG 58.867 45.833 10.83 0.00 0.00 3.16
301 302 4.946160 AATCCCTTCACCTACAATTGGA 57.054 40.909 10.83 0.00 0.00 3.53
302 303 4.510167 ATCCCTTCACCTACAATTGGAG 57.490 45.455 11.05 11.05 0.00 3.86
303 304 3.526899 TCCCTTCACCTACAATTGGAGA 58.473 45.455 19.85 0.00 0.00 3.71
304 305 4.111577 TCCCTTCACCTACAATTGGAGAT 58.888 43.478 19.85 0.00 0.00 2.75
305 306 4.164221 TCCCTTCACCTACAATTGGAGATC 59.836 45.833 19.85 0.00 0.00 2.75
306 307 4.080356 CCCTTCACCTACAATTGGAGATCA 60.080 45.833 19.85 0.00 0.00 2.92
307 308 5.500234 CCTTCACCTACAATTGGAGATCAA 58.500 41.667 19.85 7.05 40.01 2.57
308 309 5.355350 CCTTCACCTACAATTGGAGATCAAC 59.645 44.000 19.85 0.00 38.31 3.18
309 310 4.843728 TCACCTACAATTGGAGATCAACC 58.156 43.478 19.85 0.00 38.31 3.77
310 311 4.288366 TCACCTACAATTGGAGATCAACCA 59.712 41.667 19.85 7.43 38.31 3.67
315 316 3.670105 TTGGAGATCAACCAAGGCC 57.330 52.632 16.74 0.00 41.64 5.19
316 317 0.322456 TTGGAGATCAACCAAGGCCG 60.322 55.000 16.74 0.00 41.64 6.13
317 318 1.452108 GGAGATCAACCAAGGCCGG 60.452 63.158 0.00 0.00 0.00 6.13
318 319 1.452108 GAGATCAACCAAGGCCGGG 60.452 63.158 14.26 14.26 0.00 5.73
319 320 3.140814 GATCAACCAAGGCCGGGC 61.141 66.667 22.67 22.67 0.00 6.13
320 321 3.936772 GATCAACCAAGGCCGGGCA 62.937 63.158 31.59 7.73 0.00 5.36
321 322 3.944250 ATCAACCAAGGCCGGGCAG 62.944 63.158 31.59 21.40 0.00 4.85
322 323 4.974721 CAACCAAGGCCGGGCAGT 62.975 66.667 31.59 20.88 0.00 4.40
323 324 4.974721 AACCAAGGCCGGGCAGTG 62.975 66.667 31.59 25.45 0.00 3.66
325 326 4.431131 CCAAGGCCGGGCAGTGAT 62.431 66.667 31.59 5.69 0.00 3.06
326 327 2.589540 CAAGGCCGGGCAGTGATA 59.410 61.111 31.59 0.00 0.00 2.15
327 328 1.819632 CAAGGCCGGGCAGTGATAC 60.820 63.158 31.59 0.67 0.00 2.24
328 329 2.297895 AAGGCCGGGCAGTGATACA 61.298 57.895 31.59 0.00 0.00 2.29
329 330 1.847798 AAGGCCGGGCAGTGATACAA 61.848 55.000 31.59 0.00 0.00 2.41
330 331 1.819632 GGCCGGGCAGTGATACAAG 60.820 63.158 25.33 0.00 0.00 3.16
331 332 1.220749 GCCGGGCAGTGATACAAGA 59.779 57.895 15.62 0.00 0.00 3.02
332 333 0.179045 GCCGGGCAGTGATACAAGAT 60.179 55.000 15.62 0.00 0.00 2.40
333 334 1.871080 CCGGGCAGTGATACAAGATC 58.129 55.000 0.00 0.00 0.00 2.75
334 335 1.138859 CCGGGCAGTGATACAAGATCA 59.861 52.381 0.00 0.00 0.00 2.92
335 336 2.205074 CGGGCAGTGATACAAGATCAC 58.795 52.381 9.22 9.22 46.41 3.06
342 343 4.487714 GTGATACAAGATCACCCCTTGA 57.512 45.455 9.52 0.00 42.57 3.02
349 350 1.925888 ATCACCCCTTGATCAGCCC 59.074 57.895 0.00 0.00 41.53 5.19
350 351 1.987807 ATCACCCCTTGATCAGCCCG 61.988 60.000 0.00 0.00 41.53 6.13
351 352 2.285368 ACCCCTTGATCAGCCCGA 60.285 61.111 0.00 0.00 0.00 5.14
352 353 1.694169 ACCCCTTGATCAGCCCGAT 60.694 57.895 0.00 0.00 36.91 4.18
358 359 4.345337 GATCAGCCCGATCGTTCC 57.655 61.111 15.09 1.51 41.24 3.62
359 360 1.441729 GATCAGCCCGATCGTTCCA 59.558 57.895 15.09 0.00 41.24 3.53
360 361 0.598680 GATCAGCCCGATCGTTCCAG 60.599 60.000 15.09 0.00 41.24 3.86
361 362 1.043116 ATCAGCCCGATCGTTCCAGA 61.043 55.000 15.09 5.72 0.00 3.86
362 363 1.227089 CAGCCCGATCGTTCCAGAG 60.227 63.158 15.09 0.00 0.00 3.35
363 364 2.107141 GCCCGATCGTTCCAGAGG 59.893 66.667 15.09 7.15 0.00 3.69
364 365 2.722201 GCCCGATCGTTCCAGAGGT 61.722 63.158 15.09 0.00 0.00 3.85
365 366 1.141881 CCCGATCGTTCCAGAGGTG 59.858 63.158 15.09 0.00 0.00 4.00
366 367 1.320344 CCCGATCGTTCCAGAGGTGA 61.320 60.000 15.09 0.00 0.00 4.02
367 368 0.101399 CCGATCGTTCCAGAGGTGAG 59.899 60.000 15.09 0.00 0.00 3.51
368 369 1.095600 CGATCGTTCCAGAGGTGAGA 58.904 55.000 7.03 0.00 0.00 3.27
369 370 1.678627 CGATCGTTCCAGAGGTGAGAT 59.321 52.381 7.03 0.00 0.00 2.75
370 371 2.287308 CGATCGTTCCAGAGGTGAGATC 60.287 54.545 7.03 0.00 0.00 2.75
371 372 1.095600 TCGTTCCAGAGGTGAGATCG 58.904 55.000 0.00 0.00 0.00 3.69
372 373 1.095600 CGTTCCAGAGGTGAGATCGA 58.904 55.000 0.00 0.00 0.00 3.59
373 374 1.064803 CGTTCCAGAGGTGAGATCGAG 59.935 57.143 0.00 0.00 0.00 4.04
374 375 1.407258 GTTCCAGAGGTGAGATCGAGG 59.593 57.143 0.00 0.00 0.00 4.63
375 376 0.106469 TCCAGAGGTGAGATCGAGGG 60.106 60.000 0.00 0.00 0.00 4.30
376 377 0.106469 CCAGAGGTGAGATCGAGGGA 60.106 60.000 0.00 0.00 0.00 4.20
377 378 1.317613 CAGAGGTGAGATCGAGGGAG 58.682 60.000 0.00 0.00 0.00 4.30
378 379 0.184933 AGAGGTGAGATCGAGGGAGG 59.815 60.000 0.00 0.00 0.00 4.30
379 380 0.825840 GAGGTGAGATCGAGGGAGGG 60.826 65.000 0.00 0.00 0.00 4.30
380 381 1.834822 GGTGAGATCGAGGGAGGGG 60.835 68.421 0.00 0.00 0.00 4.79
381 382 1.230497 GTGAGATCGAGGGAGGGGA 59.770 63.158 0.00 0.00 0.00 4.81
382 383 0.825840 GTGAGATCGAGGGAGGGGAG 60.826 65.000 0.00 0.00 0.00 4.30
383 384 1.228737 GAGATCGAGGGAGGGGAGG 60.229 68.421 0.00 0.00 0.00 4.30
384 385 1.701757 AGATCGAGGGAGGGGAGGA 60.702 63.158 0.00 0.00 0.00 3.71
385 386 1.233369 GATCGAGGGAGGGGAGGAA 59.767 63.158 0.00 0.00 0.00 3.36
386 387 0.398664 GATCGAGGGAGGGGAGGAAA 60.399 60.000 0.00 0.00 0.00 3.13
387 388 0.399233 ATCGAGGGAGGGGAGGAAAG 60.399 60.000 0.00 0.00 0.00 2.62
388 389 2.066999 CGAGGGAGGGGAGGAAAGG 61.067 68.421 0.00 0.00 0.00 3.11
389 390 1.083141 GAGGGAGGGGAGGAAAGGT 59.917 63.158 0.00 0.00 0.00 3.50
390 391 0.983905 GAGGGAGGGGAGGAAAGGTC 60.984 65.000 0.00 0.00 0.00 3.85
391 392 1.083141 GGGAGGGGAGGAAAGGTCT 59.917 63.158 0.00 0.00 0.00 3.85
392 393 0.983905 GGGAGGGGAGGAAAGGTCTC 60.984 65.000 0.00 0.00 0.00 3.36
393 394 1.331399 GGAGGGGAGGAAAGGTCTCG 61.331 65.000 0.00 0.00 32.34 4.04
394 395 0.324460 GAGGGGAGGAAAGGTCTCGA 60.324 60.000 0.00 0.00 32.34 4.04
395 396 0.615261 AGGGGAGGAAAGGTCTCGAC 60.615 60.000 0.00 0.00 32.34 4.20
396 397 1.511768 GGGAGGAAAGGTCTCGACG 59.488 63.158 0.00 0.00 32.34 5.12
397 398 1.511768 GGAGGAAAGGTCTCGACGG 59.488 63.158 0.00 0.00 32.34 4.79
398 399 1.153804 GAGGAAAGGTCTCGACGGC 60.154 63.158 0.00 0.00 0.00 5.68
399 400 2.506438 GGAAAGGTCTCGACGGCG 60.506 66.667 2.87 2.87 39.35 6.46
400 401 2.506438 GAAAGGTCTCGACGGCGG 60.506 66.667 12.58 0.62 38.28 6.13
401 402 4.736896 AAAGGTCTCGACGGCGGC 62.737 66.667 12.58 7.52 38.28 6.53
418 419 4.286320 CGAGGGAATCGCCTCCGG 62.286 72.222 0.00 0.00 45.98 5.14
419 420 3.930012 GAGGGAATCGCCTCCGGG 61.930 72.222 0.00 0.00 36.21 5.73
420 421 4.475444 AGGGAATCGCCTCCGGGA 62.475 66.667 0.00 0.00 36.21 5.14
421 422 3.930012 GGGAATCGCCTCCGGGAG 61.930 72.222 17.41 17.41 36.21 4.30
436 437 2.708051 CGGGAGGAGAAAAACCCTAAC 58.292 52.381 0.00 0.00 40.12 2.34
437 438 2.708051 GGGAGGAGAAAAACCCTAACG 58.292 52.381 0.00 0.00 39.28 3.18
438 439 2.082231 GGAGGAGAAAAACCCTAACGC 58.918 52.381 0.00 0.00 31.84 4.84
845 898 4.953781 TCCAAGAGGAAAGGGATCAATT 57.046 40.909 0.00 0.00 42.23 2.32
846 899 5.275263 TCCAAGAGGAAAGGGATCAATTT 57.725 39.130 0.00 0.00 42.23 1.82
847 900 5.264395 TCCAAGAGGAAAGGGATCAATTTC 58.736 41.667 11.52 11.52 42.23 2.17
848 901 4.096984 CCAAGAGGAAAGGGATCAATTTCG 59.903 45.833 12.91 2.97 36.49 3.46
849 902 3.891049 AGAGGAAAGGGATCAATTTCGG 58.109 45.455 12.91 0.00 36.49 4.30
850 903 2.952310 GAGGAAAGGGATCAATTTCGGG 59.048 50.000 12.91 0.00 36.49 5.14
851 904 2.311841 AGGAAAGGGATCAATTTCGGGT 59.688 45.455 12.91 2.04 36.49 5.28
852 905 3.096852 GGAAAGGGATCAATTTCGGGTT 58.903 45.455 12.91 0.00 36.49 4.11
853 906 3.119137 GGAAAGGGATCAATTTCGGGTTG 60.119 47.826 12.91 0.00 36.49 3.77
854 907 2.899303 AGGGATCAATTTCGGGTTGT 57.101 45.000 0.00 0.00 0.00 3.32
855 908 2.446435 AGGGATCAATTTCGGGTTGTG 58.554 47.619 0.00 0.00 0.00 3.33
856 909 2.167662 GGGATCAATTTCGGGTTGTGT 58.832 47.619 0.00 0.00 0.00 3.72
857 910 2.560981 GGGATCAATTTCGGGTTGTGTT 59.439 45.455 0.00 0.00 0.00 3.32
858 911 3.759618 GGGATCAATTTCGGGTTGTGTTA 59.240 43.478 0.00 0.00 0.00 2.41
859 912 4.142469 GGGATCAATTTCGGGTTGTGTTAG 60.142 45.833 0.00 0.00 0.00 2.34
860 913 4.698304 GGATCAATTTCGGGTTGTGTTAGA 59.302 41.667 0.00 0.00 0.00 2.10
861 914 5.182380 GGATCAATTTCGGGTTGTGTTAGAA 59.818 40.000 0.00 0.00 0.00 2.10
862 915 6.294286 GGATCAATTTCGGGTTGTGTTAGAAA 60.294 38.462 0.00 0.00 35.64 2.52
888 943 4.260784 GGAGCTATTTTTGTATGTCTGCGG 60.261 45.833 0.00 0.00 0.00 5.69
921 976 0.179065 AGTAAATCGGCCGGCTTACC 60.179 55.000 30.32 19.77 0.00 2.85
1250 1328 7.545615 CCAATTTATCGATCTATCACCGATGAA 59.454 37.037 0.00 0.00 42.19 2.57
1999 2088 5.006386 CAGCTCTCTACCAAAACTCCAAAT 58.994 41.667 0.00 0.00 0.00 2.32
2061 2150 3.551846 GTTCTTGGTTTTGTCCCTCAGA 58.448 45.455 0.00 0.00 0.00 3.27
2225 2319 8.821686 TCCCATTCTTGTTTATTGTATGATGT 57.178 30.769 0.00 0.00 0.00 3.06
2297 2395 3.228749 CACAACTTGCACGCATTCTTAG 58.771 45.455 0.00 0.00 0.00 2.18
2325 2423 9.838339 TCTAATTTGTTTTATCTCTCCCAGATC 57.162 33.333 0.00 0.00 41.39 2.75
2364 2462 1.608025 CCGAAAGTGCTTGCTCCTGTA 60.608 52.381 0.00 0.00 0.00 2.74
2520 2618 6.472686 AAGAAGTCACACAAGAGTTACTCT 57.527 37.500 9.37 9.37 43.37 3.24
2851 2949 6.142139 TGCTCATAAACAGTTGATTTGAACG 58.858 36.000 0.00 0.00 0.00 3.95
2931 3030 6.808212 TCCATAAAAGTAGACGTTTTAGACCG 59.192 38.462 0.00 0.00 33.88 4.79
3012 3111 5.458779 CCAATTTGTTGGAAGAACTCGTTTC 59.541 40.000 0.92 0.00 44.82 2.78
3030 3131 4.630069 CGTTTCTATTCCCGACAAGTGAAT 59.370 41.667 0.00 0.00 33.54 2.57
3083 3192 4.434198 CGCGCGTGCTTATGTTGAATATAT 60.434 41.667 24.19 0.00 39.65 0.86
3157 3307 1.879380 TGAAGAAAATGCACGTGGAGG 59.121 47.619 18.88 0.00 0.00 4.30
3185 3346 1.132643 CGTCCCTGTCCGAAAGAGTAG 59.867 57.143 0.00 0.00 0.00 2.57
3331 3504 2.545810 TGTACATGACCTGATGTGGGA 58.454 47.619 0.00 0.00 37.16 4.37
3376 3549 4.989279 TTTGTGCAGAAAAGAAAGCTCT 57.011 36.364 6.55 0.00 0.00 4.09
3382 3555 5.578336 GTGCAGAAAAGAAAGCTCTTGTTTT 59.422 36.000 12.78 12.78 41.23 2.43
3383 3556 5.807011 TGCAGAAAAGAAAGCTCTTGTTTTC 59.193 36.000 22.19 22.19 41.23 2.29
3391 3564 2.378038 AGCTCTTGTTTTCTGGCACAA 58.622 42.857 0.00 0.00 38.70 3.33
3398 3571 4.637483 TGTTTTCTGGCACAAAAGAGAG 57.363 40.909 0.65 0.00 38.70 3.20
3441 3614 3.114558 CTATAGCTAGCACGGCTGC 57.885 57.895 18.83 9.45 44.63 5.25
3474 3647 6.143438 CGTTAATTGTACTCAAACGACAGACT 59.857 38.462 14.07 0.00 37.44 3.24
3563 5194 4.857509 AGCGATATACTCCCTCTGTTTC 57.142 45.455 0.00 0.00 0.00 2.78
3609 5240 8.803235 AGATTTGAATATGGACTACATACGCTA 58.197 33.333 0.00 0.00 44.41 4.26
3610 5241 8.988064 ATTTGAATATGGACTACATACGCTAG 57.012 34.615 0.00 0.00 44.41 3.42
3614 5245 8.459635 TGAATATGGACTACATACGCTAGAATC 58.540 37.037 0.00 0.00 44.41 2.52
3616 5247 6.902771 ATGGACTACATACGCTAGAATCTT 57.097 37.500 0.00 0.00 38.26 2.40
3619 5250 6.320418 TGGACTACATACGCTAGAATCTTGAA 59.680 38.462 0.00 0.00 0.00 2.69
3661 7488 3.430929 CGGAGGGAGTAGAACCAAATGAG 60.431 52.174 0.00 0.00 0.00 2.90
3663 7490 4.508662 GAGGGAGTAGAACCAAATGAGTG 58.491 47.826 0.00 0.00 0.00 3.51
3664 7491 3.910627 AGGGAGTAGAACCAAATGAGTGT 59.089 43.478 0.00 0.00 0.00 3.55
3665 7492 4.351111 AGGGAGTAGAACCAAATGAGTGTT 59.649 41.667 0.00 0.00 0.00 3.32
3666 7493 5.070685 GGGAGTAGAACCAAATGAGTGTTT 58.929 41.667 0.00 0.00 0.00 2.83
3667 7494 6.043938 AGGGAGTAGAACCAAATGAGTGTTTA 59.956 38.462 0.00 0.00 0.00 2.01
3668 7495 6.884836 GGGAGTAGAACCAAATGAGTGTTTAT 59.115 38.462 0.00 0.00 0.00 1.40
3669 7496 7.065923 GGGAGTAGAACCAAATGAGTGTTTATC 59.934 40.741 0.00 0.00 0.00 1.75
3670 7497 7.201530 GGAGTAGAACCAAATGAGTGTTTATCG 60.202 40.741 0.00 0.00 0.00 2.92
3671 7498 7.159372 AGTAGAACCAAATGAGTGTTTATCGT 58.841 34.615 0.00 0.00 0.00 3.73
3672 7499 6.877611 AGAACCAAATGAGTGTTTATCGTT 57.122 33.333 0.00 0.00 0.00 3.85
3673 7500 7.272037 AGAACCAAATGAGTGTTTATCGTTT 57.728 32.000 0.00 0.00 36.55 3.60
3674 7501 7.138736 AGAACCAAATGAGTGTTTATCGTTTG 58.861 34.615 11.77 11.77 46.29 2.93
3682 7509 7.117241 TGAGTGTTTATCGTTTGATCAGAAC 57.883 36.000 0.00 3.37 35.99 3.01
3708 7535 1.146566 GGCCATGATCAATTCCCTCCT 59.853 52.381 0.00 0.00 0.00 3.69
3711 7538 3.689280 GCCATGATCAATTCCCTCCTCAA 60.689 47.826 0.00 0.00 0.00 3.02
3717 7544 1.815003 CAATTCCCTCCTCAAGTGTGC 59.185 52.381 0.00 0.00 0.00 4.57
3772 7599 2.182030 CCACGTCTCCGCTTCTCC 59.818 66.667 0.00 0.00 37.70 3.71
3863 8693 6.385649 TTTTCATTACACTCAACCTTCACC 57.614 37.500 0.00 0.00 0.00 4.02
3960 8790 1.059913 CCGCCCCTTCTGATAATCCT 58.940 55.000 0.00 0.00 0.00 3.24
3962 8792 2.637872 CCGCCCCTTCTGATAATCCTTA 59.362 50.000 0.00 0.00 0.00 2.69
4001 8831 5.595885 TGAAACAGTGAGTCTCTCTTTCAG 58.404 41.667 16.75 1.89 31.09 3.02
4013 8843 3.222603 TCTCTTTCAGGCAGGGAAAAAC 58.777 45.455 0.00 0.00 34.15 2.43
4014 8844 1.953686 TCTTTCAGGCAGGGAAAAACG 59.046 47.619 0.00 0.00 34.15 3.60
4015 8845 1.681264 CTTTCAGGCAGGGAAAAACGT 59.319 47.619 0.00 0.00 34.15 3.99
4024 8855 6.317893 CAGGCAGGGAAAAACGTATATAGTTT 59.682 38.462 0.00 4.17 42.86 2.66
4036 8867 5.544948 ACGTATATAGTTTCCCCCATGCTAA 59.455 40.000 0.00 0.00 0.00 3.09
4040 8871 9.614792 GTATATAGTTTCCCCCATGCTAAATAG 57.385 37.037 0.00 0.00 0.00 1.73
4041 8872 6.780198 ATAGTTTCCCCCATGCTAAATAGA 57.220 37.500 0.00 0.00 0.00 1.98
4043 8874 5.201243 AGTTTCCCCCATGCTAAATAGAAC 58.799 41.667 0.00 0.00 0.00 3.01
4044 8875 5.044105 AGTTTCCCCCATGCTAAATAGAACT 60.044 40.000 0.00 0.00 0.00 3.01
4045 8876 5.466127 TTCCCCCATGCTAAATAGAACTT 57.534 39.130 0.00 0.00 0.00 2.66
4046 8877 5.466127 TCCCCCATGCTAAATAGAACTTT 57.534 39.130 0.00 0.00 0.00 2.66
4047 8878 5.837829 TCCCCCATGCTAAATAGAACTTTT 58.162 37.500 0.00 0.00 0.00 2.27
4048 8879 5.891551 TCCCCCATGCTAAATAGAACTTTTC 59.108 40.000 0.00 0.00 0.00 2.29
4049 8880 5.656416 CCCCCATGCTAAATAGAACTTTTCA 59.344 40.000 0.00 0.00 0.00 2.69
4050 8881 6.154363 CCCCCATGCTAAATAGAACTTTTCAA 59.846 38.462 0.00 0.00 0.00 2.69
4051 8882 7.147672 CCCCCATGCTAAATAGAACTTTTCAAT 60.148 37.037 0.00 0.00 0.00 2.57
4052 8883 7.922811 CCCCATGCTAAATAGAACTTTTCAATC 59.077 37.037 0.00 0.00 0.00 2.67
4053 8884 8.689972 CCCATGCTAAATAGAACTTTTCAATCT 58.310 33.333 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.409218 AATGTGCGCGCTGCTTGG 62.409 61.111 33.29 0.00 46.63 3.61
1 2 2.791396 AAGAATGTGCGCGCTGCTTG 62.791 55.000 33.29 0.43 46.63 4.01
2 3 2.620112 AAGAATGTGCGCGCTGCTT 61.620 52.632 33.29 19.38 46.63 3.91
3 4 3.052082 AAGAATGTGCGCGCTGCT 61.052 55.556 33.29 13.73 46.63 4.24
5 6 0.247419 CTACAAGAATGTGCGCGCTG 60.247 55.000 33.29 21.92 40.84 5.18
6 7 0.389817 TCTACAAGAATGTGCGCGCT 60.390 50.000 33.29 12.33 40.84 5.92
7 8 0.442310 TTCTACAAGAATGTGCGCGC 59.558 50.000 27.26 27.26 40.84 6.86
8 9 1.524986 CGTTCTACAAGAATGTGCGCG 60.525 52.381 0.00 0.00 40.84 6.86
9 10 1.724623 TCGTTCTACAAGAATGTGCGC 59.275 47.619 0.00 0.00 40.99 6.09
10 11 4.584029 ATTCGTTCTACAAGAATGTGCG 57.416 40.909 8.35 1.19 40.99 5.34
12 13 7.542477 AGTCAGTATTCGTTCTACAAGAATGTG 59.458 37.037 8.35 1.11 40.99 3.21
13 14 7.542477 CAGTCAGTATTCGTTCTACAAGAATGT 59.458 37.037 8.35 0.00 40.99 2.71
14 15 7.542477 ACAGTCAGTATTCGTTCTACAAGAATG 59.458 37.037 3.01 3.01 41.43 2.67
15 16 7.603651 ACAGTCAGTATTCGTTCTACAAGAAT 58.396 34.615 0.00 0.00 36.50 2.40
16 17 6.978338 ACAGTCAGTATTCGTTCTACAAGAA 58.022 36.000 0.00 0.00 0.00 2.52
17 18 6.570672 ACAGTCAGTATTCGTTCTACAAGA 57.429 37.500 0.00 0.00 0.00 3.02
18 19 7.968956 ACATACAGTCAGTATTCGTTCTACAAG 59.031 37.037 0.00 0.00 41.47 3.16
19 20 7.823665 ACATACAGTCAGTATTCGTTCTACAA 58.176 34.615 0.00 0.00 41.47 2.41
20 21 7.387119 ACATACAGTCAGTATTCGTTCTACA 57.613 36.000 0.00 0.00 41.47 2.74
21 22 8.684973 AAACATACAGTCAGTATTCGTTCTAC 57.315 34.615 0.00 0.00 41.47 2.59
22 23 9.135843 CAAAACATACAGTCAGTATTCGTTCTA 57.864 33.333 0.00 0.00 41.47 2.10
23 24 7.656137 ACAAAACATACAGTCAGTATTCGTTCT 59.344 33.333 0.00 0.00 41.47 3.01
24 25 7.793902 ACAAAACATACAGTCAGTATTCGTTC 58.206 34.615 0.00 0.00 41.47 3.95
25 26 7.724305 ACAAAACATACAGTCAGTATTCGTT 57.276 32.000 0.00 0.00 41.47 3.85
26 27 7.439955 TCAACAAAACATACAGTCAGTATTCGT 59.560 33.333 0.00 0.00 41.47 3.85
27 28 7.792925 TCAACAAAACATACAGTCAGTATTCG 58.207 34.615 0.00 0.00 41.47 3.34
31 32 8.664798 GCATATCAACAAAACATACAGTCAGTA 58.335 33.333 0.00 0.00 37.06 2.74
32 33 7.174772 TGCATATCAACAAAACATACAGTCAGT 59.825 33.333 0.00 0.00 0.00 3.41
33 34 7.482743 GTGCATATCAACAAAACATACAGTCAG 59.517 37.037 0.00 0.00 0.00 3.51
34 35 7.304735 GTGCATATCAACAAAACATACAGTCA 58.695 34.615 0.00 0.00 0.00 3.41
35 36 6.747280 GGTGCATATCAACAAAACATACAGTC 59.253 38.462 0.00 0.00 31.06 3.51
36 37 6.350110 GGGTGCATATCAACAAAACATACAGT 60.350 38.462 0.00 0.00 32.80 3.55
37 38 6.035843 GGGTGCATATCAACAAAACATACAG 58.964 40.000 0.00 0.00 32.80 2.74
38 39 5.478332 TGGGTGCATATCAACAAAACATACA 59.522 36.000 0.00 0.00 32.80 2.29
39 40 5.804979 GTGGGTGCATATCAACAAAACATAC 59.195 40.000 0.00 0.00 32.80 2.39
40 41 5.392487 CGTGGGTGCATATCAACAAAACATA 60.392 40.000 0.00 0.00 32.80 2.29
41 42 4.617995 CGTGGGTGCATATCAACAAAACAT 60.618 41.667 0.00 0.00 32.80 2.71
42 43 3.304996 CGTGGGTGCATATCAACAAAACA 60.305 43.478 0.00 0.00 32.80 2.83
43 44 3.241701 CGTGGGTGCATATCAACAAAAC 58.758 45.455 0.00 0.00 32.80 2.43
44 45 2.352225 GCGTGGGTGCATATCAACAAAA 60.352 45.455 0.00 0.00 32.80 2.44
45 46 1.201181 GCGTGGGTGCATATCAACAAA 59.799 47.619 0.00 0.00 32.80 2.83
46 47 0.808125 GCGTGGGTGCATATCAACAA 59.192 50.000 0.00 0.00 32.80 2.83
47 48 1.029408 GGCGTGGGTGCATATCAACA 61.029 55.000 0.00 0.00 32.80 3.33
48 49 1.029408 TGGCGTGGGTGCATATCAAC 61.029 55.000 0.00 0.00 36.28 3.18
49 50 1.029408 GTGGCGTGGGTGCATATCAA 61.029 55.000 0.00 0.00 36.28 2.57
50 51 1.451207 GTGGCGTGGGTGCATATCA 60.451 57.895 0.00 0.00 36.28 2.15
51 52 1.439353 CTGTGGCGTGGGTGCATATC 61.439 60.000 0.00 0.00 36.28 1.63
52 53 1.451927 CTGTGGCGTGGGTGCATAT 60.452 57.895 0.00 0.00 36.28 1.78
53 54 2.046411 CTGTGGCGTGGGTGCATA 60.046 61.111 0.00 0.00 36.28 3.14
64 65 1.890979 CCAGATGGATCGCTGTGGC 60.891 63.158 0.00 0.00 37.39 5.01
65 66 0.531532 GACCAGATGGATCGCTGTGG 60.532 60.000 5.72 7.53 38.94 4.17
66 67 0.873312 CGACCAGATGGATCGCTGTG 60.873 60.000 5.72 0.00 38.94 3.66
67 68 1.037579 TCGACCAGATGGATCGCTGT 61.038 55.000 5.72 0.00 38.94 4.40
68 69 0.103026 TTCGACCAGATGGATCGCTG 59.897 55.000 5.72 2.81 38.94 5.18
69 70 1.000283 GATTCGACCAGATGGATCGCT 60.000 52.381 5.72 2.97 38.94 4.93
70 71 1.000283 AGATTCGACCAGATGGATCGC 60.000 52.381 5.72 0.13 38.94 4.58
71 72 2.608998 CCAGATTCGACCAGATGGATCG 60.609 54.545 5.72 11.01 38.94 3.69
72 73 2.366916 ACCAGATTCGACCAGATGGATC 59.633 50.000 5.72 0.00 38.94 3.36
73 74 2.103771 CACCAGATTCGACCAGATGGAT 59.896 50.000 5.72 0.00 38.94 3.41
74 75 1.482182 CACCAGATTCGACCAGATGGA 59.518 52.381 5.72 0.00 38.94 3.41
75 76 1.473965 CCACCAGATTCGACCAGATGG 60.474 57.143 0.00 0.00 42.17 3.51
76 77 1.208052 ACCACCAGATTCGACCAGATG 59.792 52.381 0.00 0.00 0.00 2.90
77 78 1.208052 CACCACCAGATTCGACCAGAT 59.792 52.381 0.00 0.00 0.00 2.90
78 79 0.608130 CACCACCAGATTCGACCAGA 59.392 55.000 0.00 0.00 0.00 3.86
79 80 1.021390 GCACCACCAGATTCGACCAG 61.021 60.000 0.00 0.00 0.00 4.00
80 81 1.003839 GCACCACCAGATTCGACCA 60.004 57.895 0.00 0.00 0.00 4.02
81 82 1.745489 GGCACCACCAGATTCGACC 60.745 63.158 0.00 0.00 38.86 4.79
82 83 0.741221 GAGGCACCACCAGATTCGAC 60.741 60.000 0.00 0.00 43.14 4.20
83 84 0.904865 AGAGGCACCACCAGATTCGA 60.905 55.000 0.00 0.00 43.14 3.71
84 85 0.036010 AAGAGGCACCACCAGATTCG 60.036 55.000 0.00 0.00 43.14 3.34
85 86 2.087646 GAAAGAGGCACCACCAGATTC 58.912 52.381 0.00 0.00 43.14 2.52
86 87 1.707427 AGAAAGAGGCACCACCAGATT 59.293 47.619 0.00 0.00 43.14 2.40
87 88 1.280421 GAGAAAGAGGCACCACCAGAT 59.720 52.381 0.00 0.00 43.14 2.90
88 89 0.687354 GAGAAAGAGGCACCACCAGA 59.313 55.000 0.00 0.00 43.14 3.86
89 90 0.671781 CGAGAAAGAGGCACCACCAG 60.672 60.000 0.00 0.00 43.14 4.00
90 91 1.371183 CGAGAAAGAGGCACCACCA 59.629 57.895 0.00 0.00 43.14 4.17
91 92 0.670854 GACGAGAAAGAGGCACCACC 60.671 60.000 0.00 0.00 39.61 4.61
92 93 1.009389 CGACGAGAAAGAGGCACCAC 61.009 60.000 0.00 0.00 0.00 4.16
93 94 1.289066 CGACGAGAAAGAGGCACCA 59.711 57.895 0.00 0.00 0.00 4.17
94 95 0.524862 TACGACGAGAAAGAGGCACC 59.475 55.000 0.00 0.00 0.00 5.01
95 96 1.467734 TCTACGACGAGAAAGAGGCAC 59.532 52.381 0.00 0.00 0.00 5.01
96 97 1.817357 TCTACGACGAGAAAGAGGCA 58.183 50.000 0.00 0.00 0.00 4.75
97 98 2.355132 TGATCTACGACGAGAAAGAGGC 59.645 50.000 0.00 0.00 0.00 4.70
98 99 3.942739 GTGATCTACGACGAGAAAGAGG 58.057 50.000 0.00 0.00 0.00 3.69
111 112 1.063764 GACCTGGACGACGTGATCTAC 59.936 57.143 4.58 0.00 0.00 2.59
112 113 1.376543 GACCTGGACGACGTGATCTA 58.623 55.000 4.58 0.00 0.00 1.98
113 114 1.313812 GGACCTGGACGACGTGATCT 61.314 60.000 4.58 0.00 0.00 2.75
114 115 1.139095 GGACCTGGACGACGTGATC 59.861 63.158 4.58 0.00 0.00 2.92
115 116 1.304217 AGGACCTGGACGACGTGAT 60.304 57.895 4.58 0.00 0.00 3.06
116 117 1.970114 GAGGACCTGGACGACGTGA 60.970 63.158 4.58 0.00 0.00 4.35
117 118 1.524863 AAGAGGACCTGGACGACGTG 61.525 60.000 4.58 0.00 0.00 4.49
118 119 1.228490 AAGAGGACCTGGACGACGT 60.228 57.895 0.00 0.00 0.00 4.34
119 120 1.507174 GAAGAGGACCTGGACGACG 59.493 63.158 0.00 0.00 0.00 5.12
120 121 1.507174 CGAAGAGGACCTGGACGAC 59.493 63.158 0.00 0.00 0.00 4.34
121 122 2.341101 GCGAAGAGGACCTGGACGA 61.341 63.158 0.00 0.00 0.00 4.20
122 123 2.182030 GCGAAGAGGACCTGGACG 59.818 66.667 0.00 2.42 0.00 4.79
123 124 2.182030 CGCGAAGAGGACCTGGAC 59.818 66.667 0.00 0.00 0.00 4.02
132 133 2.510238 CTTGGGCTCCGCGAAGAG 60.510 66.667 8.23 8.02 36.92 2.85
133 134 4.760047 GCTTGGGCTCCGCGAAGA 62.760 66.667 8.23 0.00 35.22 2.87
150 151 1.134280 ACAAAGAGGATGATGGCGGAG 60.134 52.381 0.00 0.00 0.00 4.63
151 152 0.911769 ACAAAGAGGATGATGGCGGA 59.088 50.000 0.00 0.00 0.00 5.54
152 153 1.303309 GACAAAGAGGATGATGGCGG 58.697 55.000 0.00 0.00 0.00 6.13
153 154 1.303309 GGACAAAGAGGATGATGGCG 58.697 55.000 0.00 0.00 0.00 5.69
154 155 1.064463 TGGGACAAAGAGGATGATGGC 60.064 52.381 0.00 0.00 31.92 4.40
155 156 2.928334 CTGGGACAAAGAGGATGATGG 58.072 52.381 0.00 0.00 38.70 3.51
156 157 2.295885 GCTGGGACAAAGAGGATGATG 58.704 52.381 0.00 0.00 38.70 3.07
157 158 1.918262 TGCTGGGACAAAGAGGATGAT 59.082 47.619 0.00 0.00 38.70 2.45
158 159 1.280133 CTGCTGGGACAAAGAGGATGA 59.720 52.381 0.00 0.00 38.70 2.92
159 160 1.747709 CTGCTGGGACAAAGAGGATG 58.252 55.000 0.00 0.00 38.70 3.51
160 161 0.034670 GCTGCTGGGACAAAGAGGAT 60.035 55.000 0.00 0.00 38.70 3.24
161 162 1.376466 GCTGCTGGGACAAAGAGGA 59.624 57.895 0.00 0.00 38.70 3.71
162 163 2.037136 CGCTGCTGGGACAAAGAGG 61.037 63.158 1.02 0.00 38.70 3.69
163 164 2.037136 CCGCTGCTGGGACAAAGAG 61.037 63.158 9.32 0.00 38.70 2.85
164 165 2.032528 CCGCTGCTGGGACAAAGA 59.967 61.111 9.32 0.00 38.70 2.52
172 173 4.335647 AGTTGACCCCGCTGCTGG 62.336 66.667 2.75 2.75 0.00 4.85
173 174 2.743928 GAGTTGACCCCGCTGCTG 60.744 66.667 0.00 0.00 0.00 4.41
174 175 4.021925 GGAGTTGACCCCGCTGCT 62.022 66.667 0.00 0.00 0.00 4.24
176 177 4.760047 CCGGAGTTGACCCCGCTG 62.760 72.222 0.00 0.00 44.07 5.18
178 179 4.754667 GTCCGGAGTTGACCCCGC 62.755 72.222 3.06 0.00 44.07 6.13
179 180 4.430765 CGTCCGGAGTTGACCCCG 62.431 72.222 3.06 0.00 44.94 5.73
180 181 1.325476 ATACGTCCGGAGTTGACCCC 61.325 60.000 3.06 0.00 0.00 4.95
181 182 0.533951 AATACGTCCGGAGTTGACCC 59.466 55.000 3.06 0.00 0.00 4.46
182 183 1.997606 CAAATACGTCCGGAGTTGACC 59.002 52.381 3.06 0.00 36.24 4.02
183 184 1.392510 GCAAATACGTCCGGAGTTGAC 59.607 52.381 15.46 3.99 36.24 3.18
184 185 1.673626 GGCAAATACGTCCGGAGTTGA 60.674 52.381 15.46 0.00 36.24 3.18
185 186 0.725117 GGCAAATACGTCCGGAGTTG 59.275 55.000 3.06 7.67 37.12 3.16
186 187 0.738412 CGGCAAATACGTCCGGAGTT 60.738 55.000 3.06 0.00 39.52 3.01
187 188 1.153706 CGGCAAATACGTCCGGAGT 60.154 57.895 3.06 8.18 39.52 3.85
188 189 1.140161 TCGGCAAATACGTCCGGAG 59.860 57.895 3.06 1.12 43.10 4.63
189 190 1.153784 GTCGGCAAATACGTCCGGA 60.154 57.895 12.10 0.00 43.10 5.14
190 191 2.510594 CGTCGGCAAATACGTCCGG 61.511 63.158 12.10 0.00 43.10 5.14
191 192 2.992313 CGTCGGCAAATACGTCCG 59.008 61.111 6.30 6.30 44.16 4.79
192 193 0.526096 TAGCGTCGGCAAATACGTCC 60.526 55.000 0.00 0.00 43.41 4.79
193 194 1.270971 TTAGCGTCGGCAAATACGTC 58.729 50.000 0.00 0.00 43.41 4.34
194 195 1.391144 GTTTAGCGTCGGCAAATACGT 59.609 47.619 0.00 0.00 43.41 3.57
195 196 1.657094 AGTTTAGCGTCGGCAAATACG 59.343 47.619 0.00 0.00 43.41 3.06
196 197 5.399604 AATAGTTTAGCGTCGGCAAATAC 57.600 39.130 0.00 0.00 43.41 1.89
197 198 4.207635 CGAATAGTTTAGCGTCGGCAAATA 59.792 41.667 0.00 0.00 43.41 1.40
198 199 3.000925 CGAATAGTTTAGCGTCGGCAAAT 59.999 43.478 0.00 0.00 43.41 2.32
199 200 2.346244 CGAATAGTTTAGCGTCGGCAAA 59.654 45.455 0.00 0.00 43.41 3.68
200 201 1.921887 CGAATAGTTTAGCGTCGGCAA 59.078 47.619 0.00 0.00 43.41 4.52
201 202 1.552226 CGAATAGTTTAGCGTCGGCA 58.448 50.000 0.00 0.00 43.41 5.69
202 203 0.228994 GCGAATAGTTTAGCGTCGGC 59.771 55.000 0.00 0.00 40.37 5.54
203 204 1.517276 CAGCGAATAGTTTAGCGTCGG 59.483 52.381 0.00 0.00 38.37 4.79
204 205 1.072089 GCAGCGAATAGTTTAGCGTCG 60.072 52.381 0.00 0.00 38.37 5.12
205 206 1.258197 GGCAGCGAATAGTTTAGCGTC 59.742 52.381 0.00 0.00 38.37 5.19
206 207 1.287425 GGCAGCGAATAGTTTAGCGT 58.713 50.000 0.00 0.00 38.37 5.07
207 208 1.286501 TGGCAGCGAATAGTTTAGCG 58.713 50.000 0.00 0.00 38.37 4.26
208 209 4.058817 AGTATGGCAGCGAATAGTTTAGC 58.941 43.478 0.00 0.00 34.07 3.09
209 210 4.383052 CGAGTATGGCAGCGAATAGTTTAG 59.617 45.833 0.00 0.00 0.00 1.85
210 211 4.037089 TCGAGTATGGCAGCGAATAGTTTA 59.963 41.667 0.00 0.00 0.00 2.01
211 212 3.123804 CGAGTATGGCAGCGAATAGTTT 58.876 45.455 0.00 0.00 0.00 2.66
212 213 2.361119 TCGAGTATGGCAGCGAATAGTT 59.639 45.455 0.00 0.00 0.00 2.24
213 214 1.954382 TCGAGTATGGCAGCGAATAGT 59.046 47.619 0.00 0.00 0.00 2.12
214 215 2.706555 TCGAGTATGGCAGCGAATAG 57.293 50.000 0.00 0.00 0.00 1.73
215 216 3.120792 GTTTCGAGTATGGCAGCGAATA 58.879 45.455 14.73 6.69 41.60 1.75
216 217 1.933853 GTTTCGAGTATGGCAGCGAAT 59.066 47.619 14.73 0.00 41.60 3.34
217 218 1.355971 GTTTCGAGTATGGCAGCGAA 58.644 50.000 11.44 11.44 40.49 4.70
218 219 0.459585 GGTTTCGAGTATGGCAGCGA 60.460 55.000 0.00 0.00 0.00 4.93
219 220 1.429148 GGGTTTCGAGTATGGCAGCG 61.429 60.000 0.00 0.00 0.00 5.18
220 221 0.107654 AGGGTTTCGAGTATGGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
221 222 3.195661 GTTAGGGTTTCGAGTATGGCAG 58.804 50.000 0.00 0.00 0.00 4.85
222 223 2.093341 GGTTAGGGTTTCGAGTATGGCA 60.093 50.000 0.00 0.00 0.00 4.92
223 224 2.558378 GGTTAGGGTTTCGAGTATGGC 58.442 52.381 0.00 0.00 0.00 4.40
224 225 2.482490 CGGGTTAGGGTTTCGAGTATGG 60.482 54.545 0.00 0.00 0.00 2.74
225 226 2.428171 TCGGGTTAGGGTTTCGAGTATG 59.572 50.000 0.00 0.00 0.00 2.39
226 227 2.738743 TCGGGTTAGGGTTTCGAGTAT 58.261 47.619 0.00 0.00 0.00 2.12
227 228 2.214376 TCGGGTTAGGGTTTCGAGTA 57.786 50.000 0.00 0.00 0.00 2.59
228 229 1.565067 ATCGGGTTAGGGTTTCGAGT 58.435 50.000 0.00 0.00 33.32 4.18
229 230 2.685850 AATCGGGTTAGGGTTTCGAG 57.314 50.000 0.00 0.00 33.32 4.04
230 231 3.421919 AAAATCGGGTTAGGGTTTCGA 57.578 42.857 0.00 0.00 0.00 3.71
231 232 4.506758 TCTAAAATCGGGTTAGGGTTTCG 58.493 43.478 0.00 0.00 0.00 3.46
232 233 4.334759 GCTCTAAAATCGGGTTAGGGTTTC 59.665 45.833 0.00 0.00 32.51 2.78
233 234 4.267536 GCTCTAAAATCGGGTTAGGGTTT 58.732 43.478 0.00 0.00 32.51 3.27
234 235 3.371273 GGCTCTAAAATCGGGTTAGGGTT 60.371 47.826 0.00 0.00 32.51 4.11
235 236 2.172082 GGCTCTAAAATCGGGTTAGGGT 59.828 50.000 0.00 0.00 32.51 4.34
236 237 2.171870 TGGCTCTAAAATCGGGTTAGGG 59.828 50.000 0.00 0.00 32.98 3.53
237 238 3.553828 TGGCTCTAAAATCGGGTTAGG 57.446 47.619 0.00 0.00 0.00 2.69
238 239 3.626217 GGTTGGCTCTAAAATCGGGTTAG 59.374 47.826 0.00 0.00 0.00 2.34
239 240 3.613030 GGTTGGCTCTAAAATCGGGTTA 58.387 45.455 0.00 0.00 0.00 2.85
240 241 2.443416 GGTTGGCTCTAAAATCGGGTT 58.557 47.619 0.00 0.00 0.00 4.11
241 242 1.677820 CGGTTGGCTCTAAAATCGGGT 60.678 52.381 0.00 0.00 0.00 5.28
242 243 1.014352 CGGTTGGCTCTAAAATCGGG 58.986 55.000 0.00 0.00 0.00 5.14
243 244 1.014352 CCGGTTGGCTCTAAAATCGG 58.986 55.000 0.00 0.00 0.00 4.18
244 245 1.014352 CCCGGTTGGCTCTAAAATCG 58.986 55.000 0.00 0.00 0.00 3.34
245 246 2.124277 ACCCGGTTGGCTCTAAAATC 57.876 50.000 0.00 0.00 37.83 2.17
246 247 3.945640 ATACCCGGTTGGCTCTAAAAT 57.054 42.857 0.00 0.00 37.83 1.82
247 248 3.349022 CAATACCCGGTTGGCTCTAAAA 58.651 45.455 0.00 0.00 37.83 1.52
248 249 2.356330 CCAATACCCGGTTGGCTCTAAA 60.356 50.000 9.21 0.00 39.64 1.85
249 250 1.210967 CCAATACCCGGTTGGCTCTAA 59.789 52.381 9.21 0.00 39.64 2.10
250 251 0.834612 CCAATACCCGGTTGGCTCTA 59.165 55.000 9.21 0.00 39.64 2.43
251 252 0.912487 TCCAATACCCGGTTGGCTCT 60.912 55.000 15.78 0.00 44.57 4.09
252 253 0.034863 TTCCAATACCCGGTTGGCTC 60.035 55.000 15.78 0.00 44.57 4.70
253 254 0.406361 TTTCCAATACCCGGTTGGCT 59.594 50.000 15.78 0.00 44.57 4.75
254 255 0.815095 CTTTCCAATACCCGGTTGGC 59.185 55.000 15.78 0.00 44.57 4.52
255 256 2.490509 GTTCTTTCCAATACCCGGTTGG 59.509 50.000 14.69 14.69 45.94 3.77
256 257 2.490509 GGTTCTTTCCAATACCCGGTTG 59.509 50.000 0.00 0.00 0.00 3.77
257 258 2.555892 GGGTTCTTTCCAATACCCGGTT 60.556 50.000 0.00 0.00 40.75 4.44
258 259 1.005097 GGGTTCTTTCCAATACCCGGT 59.995 52.381 0.00 0.00 40.75 5.28
259 260 1.758936 GGGTTCTTTCCAATACCCGG 58.241 55.000 0.00 0.00 40.75 5.73
262 263 5.103643 AGGGATTAGGGTTCTTTCCAATACC 60.104 44.000 0.00 0.00 31.58 2.73
263 264 6.014771 AGGGATTAGGGTTCTTTCCAATAC 57.985 41.667 0.00 0.00 0.00 1.89
264 265 6.218730 TGAAGGGATTAGGGTTCTTTCCAATA 59.781 38.462 0.00 0.00 0.00 1.90
265 266 5.016245 TGAAGGGATTAGGGTTCTTTCCAAT 59.984 40.000 0.00 0.00 0.00 3.16
266 267 4.355588 TGAAGGGATTAGGGTTCTTTCCAA 59.644 41.667 0.00 0.00 0.00 3.53
267 268 3.920197 TGAAGGGATTAGGGTTCTTTCCA 59.080 43.478 0.00 0.00 0.00 3.53
268 269 4.270834 GTGAAGGGATTAGGGTTCTTTCC 58.729 47.826 0.00 0.00 0.00 3.13
269 270 4.018324 AGGTGAAGGGATTAGGGTTCTTTC 60.018 45.833 0.00 0.00 0.00 2.62
270 271 3.923425 AGGTGAAGGGATTAGGGTTCTTT 59.077 43.478 0.00 0.00 0.00 2.52
271 272 3.542604 AGGTGAAGGGATTAGGGTTCTT 58.457 45.455 0.00 0.00 0.00 2.52
272 273 3.222394 AGGTGAAGGGATTAGGGTTCT 57.778 47.619 0.00 0.00 0.00 3.01
273 274 3.778629 TGTAGGTGAAGGGATTAGGGTTC 59.221 47.826 0.00 0.00 0.00 3.62
274 275 3.810623 TGTAGGTGAAGGGATTAGGGTT 58.189 45.455 0.00 0.00 0.00 4.11
275 276 3.502051 TGTAGGTGAAGGGATTAGGGT 57.498 47.619 0.00 0.00 0.00 4.34
276 277 5.133221 CAATTGTAGGTGAAGGGATTAGGG 58.867 45.833 0.00 0.00 0.00 3.53
277 278 5.104109 TCCAATTGTAGGTGAAGGGATTAGG 60.104 44.000 4.43 0.00 0.00 2.69
278 279 6.001449 TCCAATTGTAGGTGAAGGGATTAG 57.999 41.667 4.43 0.00 0.00 1.73
279 280 5.729229 TCTCCAATTGTAGGTGAAGGGATTA 59.271 40.000 4.43 0.00 0.00 1.75
280 281 4.540099 TCTCCAATTGTAGGTGAAGGGATT 59.460 41.667 4.43 0.00 0.00 3.01
281 282 4.111577 TCTCCAATTGTAGGTGAAGGGAT 58.888 43.478 4.43 0.00 0.00 3.85
282 283 3.526899 TCTCCAATTGTAGGTGAAGGGA 58.473 45.455 4.43 0.00 0.00 4.20
283 284 4.080356 TGATCTCCAATTGTAGGTGAAGGG 60.080 45.833 4.43 0.00 32.94 3.95
284 285 5.102953 TGATCTCCAATTGTAGGTGAAGG 57.897 43.478 4.43 0.00 32.94 3.46
285 286 5.355350 GGTTGATCTCCAATTGTAGGTGAAG 59.645 44.000 4.43 0.00 37.08 3.02
286 287 5.222027 TGGTTGATCTCCAATTGTAGGTGAA 60.222 40.000 4.43 0.00 37.08 3.18
287 288 4.288366 TGGTTGATCTCCAATTGTAGGTGA 59.712 41.667 4.43 0.00 37.08 4.02
288 289 4.588899 TGGTTGATCTCCAATTGTAGGTG 58.411 43.478 4.43 0.00 37.08 4.00
289 290 4.927267 TGGTTGATCTCCAATTGTAGGT 57.073 40.909 4.43 0.00 37.08 3.08
290 291 4.641989 CCTTGGTTGATCTCCAATTGTAGG 59.358 45.833 18.23 13.51 42.89 3.18
291 292 4.096984 GCCTTGGTTGATCTCCAATTGTAG 59.903 45.833 18.23 0.00 42.89 2.74
292 293 4.016444 GCCTTGGTTGATCTCCAATTGTA 58.984 43.478 18.23 0.00 42.89 2.41
293 294 2.827921 GCCTTGGTTGATCTCCAATTGT 59.172 45.455 18.23 0.00 42.89 2.71
294 295 2.167075 GGCCTTGGTTGATCTCCAATTG 59.833 50.000 18.23 14.56 42.89 2.32
295 296 2.460669 GGCCTTGGTTGATCTCCAATT 58.539 47.619 18.23 0.00 42.89 2.32
296 297 1.683011 CGGCCTTGGTTGATCTCCAAT 60.683 52.381 18.23 0.00 42.89 3.16
297 298 0.322456 CGGCCTTGGTTGATCTCCAA 60.322 55.000 17.37 17.37 41.84 3.53
298 299 1.299648 CGGCCTTGGTTGATCTCCA 59.700 57.895 0.00 6.19 0.00 3.86
299 300 1.452108 CCGGCCTTGGTTGATCTCC 60.452 63.158 0.00 0.00 0.00 3.71
300 301 1.452108 CCCGGCCTTGGTTGATCTC 60.452 63.158 0.00 0.00 0.00 2.75
301 302 2.677228 CCCGGCCTTGGTTGATCT 59.323 61.111 0.00 0.00 0.00 2.75
302 303 3.140814 GCCCGGCCTTGGTTGATC 61.141 66.667 0.00 0.00 0.00 2.92
303 304 3.944250 CTGCCCGGCCTTGGTTGAT 62.944 63.158 7.03 0.00 0.00 2.57
304 305 4.659172 CTGCCCGGCCTTGGTTGA 62.659 66.667 7.03 0.00 0.00 3.18
305 306 4.974721 ACTGCCCGGCCTTGGTTG 62.975 66.667 7.03 1.37 0.00 3.77
306 307 4.974721 CACTGCCCGGCCTTGGTT 62.975 66.667 7.03 0.00 0.00 3.67
308 309 3.042733 TATCACTGCCCGGCCTTGG 62.043 63.158 7.03 1.76 0.00 3.61
309 310 1.819632 GTATCACTGCCCGGCCTTG 60.820 63.158 7.03 3.86 0.00 3.61
310 311 1.847798 TTGTATCACTGCCCGGCCTT 61.848 55.000 7.03 0.00 0.00 4.35
311 312 2.257409 CTTGTATCACTGCCCGGCCT 62.257 60.000 7.03 0.00 0.00 5.19
312 313 1.819632 CTTGTATCACTGCCCGGCC 60.820 63.158 7.03 0.00 0.00 6.13
313 314 0.179045 ATCTTGTATCACTGCCCGGC 60.179 55.000 1.04 1.04 0.00 6.13
314 315 1.138859 TGATCTTGTATCACTGCCCGG 59.861 52.381 0.00 0.00 0.00 5.73
315 316 2.205074 GTGATCTTGTATCACTGCCCG 58.795 52.381 10.19 0.00 43.62 6.13
316 317 2.565841 GGTGATCTTGTATCACTGCCC 58.434 52.381 15.54 0.00 45.60 5.36
317 318 2.565841 GGGTGATCTTGTATCACTGCC 58.434 52.381 15.54 7.58 45.60 4.85
318 319 2.171448 AGGGGTGATCTTGTATCACTGC 59.829 50.000 15.54 2.94 45.60 4.40
319 320 4.080919 TCAAGGGGTGATCTTGTATCACTG 60.081 45.833 15.54 7.97 45.60 3.66
320 321 4.104086 TCAAGGGGTGATCTTGTATCACT 58.896 43.478 15.54 0.00 45.60 3.41
321 322 4.487714 TCAAGGGGTGATCTTGTATCAC 57.512 45.455 9.18 9.18 45.59 3.06
332 333 2.669133 CGGGCTGATCAAGGGGTGA 61.669 63.158 0.00 0.00 41.67 4.02
333 334 1.987807 ATCGGGCTGATCAAGGGGTG 61.988 60.000 2.10 0.00 28.49 4.61
334 335 1.694169 ATCGGGCTGATCAAGGGGT 60.694 57.895 2.10 0.00 28.49 4.95
335 336 3.244616 ATCGGGCTGATCAAGGGG 58.755 61.111 2.10 0.00 28.49 4.79
342 343 1.043116 TCTGGAACGATCGGGCTGAT 61.043 55.000 20.98 8.96 41.06 2.90
343 344 1.667154 CTCTGGAACGATCGGGCTGA 61.667 60.000 20.98 0.00 0.00 4.26
344 345 1.227089 CTCTGGAACGATCGGGCTG 60.227 63.158 20.98 5.62 0.00 4.85
345 346 2.427245 CCTCTGGAACGATCGGGCT 61.427 63.158 20.98 2.90 0.00 5.19
346 347 2.107141 CCTCTGGAACGATCGGGC 59.893 66.667 20.98 10.46 0.00 6.13
347 348 1.141881 CACCTCTGGAACGATCGGG 59.858 63.158 20.98 11.28 0.00 5.14
348 349 0.101399 CTCACCTCTGGAACGATCGG 59.899 60.000 20.98 0.47 0.00 4.18
349 350 1.095600 TCTCACCTCTGGAACGATCG 58.904 55.000 14.88 14.88 0.00 3.69
350 351 2.287308 CGATCTCACCTCTGGAACGATC 60.287 54.545 0.00 0.00 0.00 3.69
351 352 1.678627 CGATCTCACCTCTGGAACGAT 59.321 52.381 0.00 0.00 0.00 3.73
352 353 1.095600 CGATCTCACCTCTGGAACGA 58.904 55.000 0.00 0.00 0.00 3.85
353 354 1.064803 CTCGATCTCACCTCTGGAACG 59.935 57.143 0.00 0.00 0.00 3.95
354 355 1.407258 CCTCGATCTCACCTCTGGAAC 59.593 57.143 0.00 0.00 0.00 3.62
355 356 1.686428 CCCTCGATCTCACCTCTGGAA 60.686 57.143 0.00 0.00 0.00 3.53
356 357 0.106469 CCCTCGATCTCACCTCTGGA 60.106 60.000 0.00 0.00 0.00 3.86
357 358 0.106469 TCCCTCGATCTCACCTCTGG 60.106 60.000 0.00 0.00 0.00 3.86
358 359 1.317613 CTCCCTCGATCTCACCTCTG 58.682 60.000 0.00 0.00 0.00 3.35
359 360 0.184933 CCTCCCTCGATCTCACCTCT 59.815 60.000 0.00 0.00 0.00 3.69
360 361 0.825840 CCCTCCCTCGATCTCACCTC 60.826 65.000 0.00 0.00 0.00 3.85
361 362 1.231641 CCCTCCCTCGATCTCACCT 59.768 63.158 0.00 0.00 0.00 4.00
362 363 1.834822 CCCCTCCCTCGATCTCACC 60.835 68.421 0.00 0.00 0.00 4.02
363 364 0.825840 CTCCCCTCCCTCGATCTCAC 60.826 65.000 0.00 0.00 0.00 3.51
364 365 1.539165 CTCCCCTCCCTCGATCTCA 59.461 63.158 0.00 0.00 0.00 3.27
365 366 1.228737 CCTCCCCTCCCTCGATCTC 60.229 68.421 0.00 0.00 0.00 2.75
366 367 1.297409 TTCCTCCCCTCCCTCGATCT 61.297 60.000 0.00 0.00 0.00 2.75
367 368 0.398664 TTTCCTCCCCTCCCTCGATC 60.399 60.000 0.00 0.00 0.00 3.69
368 369 0.399233 CTTTCCTCCCCTCCCTCGAT 60.399 60.000 0.00 0.00 0.00 3.59
369 370 1.001760 CTTTCCTCCCCTCCCTCGA 59.998 63.158 0.00 0.00 0.00 4.04
370 371 2.066999 CCTTTCCTCCCCTCCCTCG 61.067 68.421 0.00 0.00 0.00 4.63
371 372 0.983905 GACCTTTCCTCCCCTCCCTC 60.984 65.000 0.00 0.00 0.00 4.30
372 373 1.083141 GACCTTTCCTCCCCTCCCT 59.917 63.158 0.00 0.00 0.00 4.20
373 374 0.983905 GAGACCTTTCCTCCCCTCCC 60.984 65.000 0.00 0.00 0.00 4.30
374 375 1.331399 CGAGACCTTTCCTCCCCTCC 61.331 65.000 0.00 0.00 0.00 4.30
375 376 0.324460 TCGAGACCTTTCCTCCCCTC 60.324 60.000 0.00 0.00 0.00 4.30
376 377 0.615261 GTCGAGACCTTTCCTCCCCT 60.615 60.000 0.00 0.00 0.00 4.79
377 378 1.898885 GTCGAGACCTTTCCTCCCC 59.101 63.158 0.00 0.00 0.00 4.81
378 379 1.511768 CGTCGAGACCTTTCCTCCC 59.488 63.158 0.00 0.00 0.00 4.30
379 380 1.511768 CCGTCGAGACCTTTCCTCC 59.488 63.158 0.00 0.00 0.00 4.30
380 381 1.153804 GCCGTCGAGACCTTTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
381 382 2.971452 GCCGTCGAGACCTTTCCT 59.029 61.111 0.00 0.00 0.00 3.36
382 383 2.506438 CGCCGTCGAGACCTTTCC 60.506 66.667 0.00 0.00 38.10 3.13
383 384 2.506438 CCGCCGTCGAGACCTTTC 60.506 66.667 0.00 0.00 38.10 2.62
384 385 4.736896 GCCGCCGTCGAGACCTTT 62.737 66.667 0.00 0.00 38.10 3.11
414 415 0.475048 AGGGTTTTTCTCCTCCCGGA 60.475 55.000 0.73 0.00 44.13 5.14
415 416 1.282382 TAGGGTTTTTCTCCTCCCGG 58.718 55.000 0.00 0.00 44.13 5.73
416 417 2.708051 GTTAGGGTTTTTCTCCTCCCG 58.292 52.381 0.00 0.00 44.13 5.14
417 418 2.708051 CGTTAGGGTTTTTCTCCTCCC 58.292 52.381 0.00 0.00 40.16 4.30
418 419 2.082231 GCGTTAGGGTTTTTCTCCTCC 58.918 52.381 0.00 0.00 34.75 4.30
419 420 1.730612 CGCGTTAGGGTTTTTCTCCTC 59.269 52.381 0.00 0.00 34.75 3.71
420 421 1.345415 TCGCGTTAGGGTTTTTCTCCT 59.655 47.619 5.77 0.00 37.18 3.69
421 422 1.730612 CTCGCGTTAGGGTTTTTCTCC 59.269 52.381 5.77 0.00 0.00 3.71
422 423 1.730612 CCTCGCGTTAGGGTTTTTCTC 59.269 52.381 5.77 0.00 32.55 2.87
423 424 1.804601 CCTCGCGTTAGGGTTTTTCT 58.195 50.000 5.77 0.00 32.55 2.52
424 425 0.167470 GCCTCGCGTTAGGGTTTTTC 59.833 55.000 15.00 0.00 37.11 2.29
425 426 0.250597 AGCCTCGCGTTAGGGTTTTT 60.251 50.000 12.35 0.00 45.03 1.94
426 427 1.373812 AGCCTCGCGTTAGGGTTTT 59.626 52.632 12.35 0.00 45.03 2.43
427 428 3.066198 AGCCTCGCGTTAGGGTTT 58.934 55.556 12.35 0.00 45.03 3.27
430 431 2.551644 AAAAAGCCTCGCGTTAGGG 58.448 52.632 15.00 10.17 37.11 3.53
836 889 2.167662 ACACAACCCGAAATTGATCCC 58.832 47.619 0.00 0.00 0.00 3.85
837 890 3.934457 AACACAACCCGAAATTGATCC 57.066 42.857 0.00 0.00 0.00 3.36
838 891 5.873179 TCTAACACAACCCGAAATTGATC 57.127 39.130 1.03 0.00 0.00 2.92
839 892 6.642707 TTTCTAACACAACCCGAAATTGAT 57.357 33.333 1.03 0.00 0.00 2.57
840 893 6.452494 TTTTCTAACACAACCCGAAATTGA 57.548 33.333 1.03 0.00 0.00 2.57
841 894 6.200097 CCTTTTTCTAACACAACCCGAAATTG 59.800 38.462 0.00 0.00 0.00 2.32
842 895 6.097129 TCCTTTTTCTAACACAACCCGAAATT 59.903 34.615 0.00 0.00 0.00 1.82
843 896 5.595133 TCCTTTTTCTAACACAACCCGAAAT 59.405 36.000 0.00 0.00 0.00 2.17
844 897 4.948621 TCCTTTTTCTAACACAACCCGAAA 59.051 37.500 0.00 0.00 0.00 3.46
845 898 4.525024 TCCTTTTTCTAACACAACCCGAA 58.475 39.130 0.00 0.00 0.00 4.30
846 899 4.131596 CTCCTTTTTCTAACACAACCCGA 58.868 43.478 0.00 0.00 0.00 5.14
847 900 3.304458 GCTCCTTTTTCTAACACAACCCG 60.304 47.826 0.00 0.00 0.00 5.28
848 901 3.889538 AGCTCCTTTTTCTAACACAACCC 59.110 43.478 0.00 0.00 0.00 4.11
849 902 6.819397 ATAGCTCCTTTTTCTAACACAACC 57.181 37.500 0.00 0.00 0.00 3.77
850 903 9.529325 AAAAATAGCTCCTTTTTCTAACACAAC 57.471 29.630 11.81 0.00 31.87 3.32
851 904 9.528018 CAAAAATAGCTCCTTTTTCTAACACAA 57.472 29.630 13.80 0.00 34.46 3.33
852 905 8.691797 ACAAAAATAGCTCCTTTTTCTAACACA 58.308 29.630 13.80 0.00 34.46 3.72
858 911 9.301897 AGACATACAAAAATAGCTCCTTTTTCT 57.698 29.630 13.80 7.88 34.46 2.52
859 912 9.346725 CAGACATACAAAAATAGCTCCTTTTTC 57.653 33.333 13.80 5.64 34.46 2.29
860 913 7.814587 GCAGACATACAAAAATAGCTCCTTTTT 59.185 33.333 11.81 11.81 36.50 1.94
861 914 7.315890 GCAGACATACAAAAATAGCTCCTTTT 58.684 34.615 0.00 0.00 0.00 2.27
862 915 6.403636 CGCAGACATACAAAAATAGCTCCTTT 60.404 38.462 0.00 0.00 0.00 3.11
888 943 4.030306 CCGATTTACTATTATCTCACGCGC 59.970 45.833 5.73 0.00 0.00 6.86
921 976 1.927174 CTTCAAGCCGGTGTAGAATCG 59.073 52.381 1.90 0.00 0.00 3.34
1250 1328 4.202050 GCATTTTGCGAGGTGGAAGATTAT 60.202 41.667 0.00 0.00 31.71 1.28
1999 2088 2.170166 GCCAATCACCAAAGGTCATCA 58.830 47.619 0.00 0.00 31.02 3.07
2061 2150 3.151912 AGCAAGACTGAGCTTGGAAAT 57.848 42.857 15.03 0.00 44.17 2.17
2297 2395 9.449719 TCTGGGAGAGATAAAACAAATTAGAAC 57.550 33.333 0.00 0.00 0.00 3.01
2364 2462 2.031508 CACAAACCGTAATTTGGCGAGT 60.032 45.455 8.39 0.00 42.74 4.18
2520 2618 4.136796 CCCACTTCACATCTGTTTTCTCA 58.863 43.478 0.00 0.00 0.00 3.27
2851 2949 1.541588 GCTCCTTCCAACCACATTCAC 59.458 52.381 0.00 0.00 0.00 3.18
2931 3030 4.557205 ACGTTTCAGAGACTTGTATGGTC 58.443 43.478 0.00 0.00 0.00 4.02
3012 3111 4.137116 TCCATTCACTTGTCGGGAATAG 57.863 45.455 0.00 0.00 30.53 1.73
3030 3131 9.625747 TCAACATAGATGTGCTTATTTTATCCA 57.374 29.630 0.00 0.00 41.61 3.41
3165 3315 1.132643 CTACTCTTTCGGACAGGGACG 59.867 57.143 0.00 0.00 0.00 4.79
3177 3327 1.301293 GCAGCAGCCCCTACTCTTT 59.699 57.895 0.00 0.00 33.58 2.52
3376 3549 4.462483 ACTCTCTTTTGTGCCAGAAAACAA 59.538 37.500 0.00 0.00 34.57 2.83
3382 3555 4.816385 CACTAAACTCTCTTTTGTGCCAGA 59.184 41.667 0.00 0.00 0.00 3.86
3383 3556 4.555511 GCACTAAACTCTCTTTTGTGCCAG 60.556 45.833 16.54 0.00 37.44 4.85
3384 3557 3.315191 GCACTAAACTCTCTTTTGTGCCA 59.685 43.478 16.54 0.00 37.44 4.92
3385 3558 3.565902 AGCACTAAACTCTCTTTTGTGCC 59.434 43.478 20.95 9.56 40.51 5.01
3398 3571 5.746721 CCGGCCAAATAAATAAGCACTAAAC 59.253 40.000 2.24 0.00 0.00 2.01
3441 3614 7.411157 CGTTTGAGTACAATTAACGAACTAGGG 60.411 40.741 13.68 0.00 38.93 3.53
3474 3647 4.219070 CCTGCAATCACCTTGATCAGAAAA 59.781 41.667 0.00 0.00 35.76 2.29
3490 5121 9.920946 TTTCTCCTAAAAATATACTCCTGCAAT 57.079 29.630 0.00 0.00 0.00 3.56
3582 5213 8.150945 AGCGTATGTAGTCCATATTCAAATCTT 58.849 33.333 0.00 0.00 38.29 2.40
3635 7462 1.897802 TGGTTCTACTCCCTCCGTTTC 59.102 52.381 0.00 0.00 0.00 2.78
3639 7466 2.500098 TCATTTGGTTCTACTCCCTCCG 59.500 50.000 0.00 0.00 0.00 4.63
3661 7488 5.313623 CGGTTCTGATCAAACGATAAACAC 58.686 41.667 0.00 0.00 38.86 3.32
3663 7490 4.092968 AGCGGTTCTGATCAAACGATAAAC 59.907 41.667 8.99 0.11 38.86 2.01
3664 7491 4.250464 AGCGGTTCTGATCAAACGATAAA 58.750 39.130 8.99 0.00 38.86 1.40
3665 7492 3.857052 AGCGGTTCTGATCAAACGATAA 58.143 40.909 8.99 0.00 38.86 1.75
3666 7493 3.444916 GAGCGGTTCTGATCAAACGATA 58.555 45.455 8.99 0.00 38.86 2.92
3667 7494 2.271800 GAGCGGTTCTGATCAAACGAT 58.728 47.619 8.99 1.83 38.86 3.73
3668 7495 1.710013 GAGCGGTTCTGATCAAACGA 58.290 50.000 8.99 0.00 38.86 3.85
3669 7496 0.366871 CGAGCGGTTCTGATCAAACG 59.633 55.000 0.34 0.34 39.59 3.60
3670 7497 0.721718 CCGAGCGGTTCTGATCAAAC 59.278 55.000 0.00 4.70 0.00 2.93
3671 7498 1.019278 GCCGAGCGGTTCTGATCAAA 61.019 55.000 10.94 0.00 37.65 2.69
3672 7499 1.447838 GCCGAGCGGTTCTGATCAA 60.448 57.895 10.94 0.00 37.65 2.57
3673 7500 2.184322 GCCGAGCGGTTCTGATCA 59.816 61.111 10.94 0.00 37.65 2.92
3674 7501 2.586357 GGCCGAGCGGTTCTGATC 60.586 66.667 10.94 0.00 37.65 2.92
3675 7502 2.735772 ATGGCCGAGCGGTTCTGAT 61.736 57.895 10.94 0.00 37.65 2.90
3676 7503 3.390521 ATGGCCGAGCGGTTCTGA 61.391 61.111 10.94 0.00 37.65 3.27
3677 7504 2.930385 ATCATGGCCGAGCGGTTCTG 62.930 60.000 10.94 5.73 37.65 3.02
3682 7509 1.168407 AATTGATCATGGCCGAGCGG 61.168 55.000 4.20 4.20 38.57 5.52
3708 7535 2.092429 AGAGAAAACAGGGCACACTTGA 60.092 45.455 0.00 0.00 0.00 3.02
3711 7538 2.736670 AAGAGAAAACAGGGCACACT 57.263 45.000 0.00 0.00 0.00 3.55
3763 7590 1.743252 GGACTTGCAGGAGAAGCGG 60.743 63.158 1.40 0.00 33.85 5.52
3772 7599 3.552890 GGCTTTTTACCTTGGACTTGCAG 60.553 47.826 0.00 0.00 0.00 4.41
3893 8723 8.906867 TGGTGGATCTGATTATCAAATTTCTTC 58.093 33.333 0.00 0.00 0.00 2.87
3894 8724 8.827832 TGGTGGATCTGATTATCAAATTTCTT 57.172 30.769 0.00 0.00 0.00 2.52
3899 8729 6.718454 GGTGATGGTGGATCTGATTATCAAAT 59.282 38.462 0.00 0.00 31.55 2.32
3937 8767 2.608970 TTATCAGAAGGGGCGGCTGC 62.609 60.000 9.72 9.72 41.71 5.25
3943 8773 6.517362 GCAAATTAAGGATTATCAGAAGGGGC 60.517 42.308 0.00 0.00 0.00 5.80
3949 8779 9.023962 AGTGTTTGCAAATTAAGGATTATCAGA 57.976 29.630 16.21 0.00 0.00 3.27
3960 8790 9.593134 ACTGTTTCATAAGTGTTTGCAAATTAA 57.407 25.926 16.21 1.49 0.00 1.40
3962 8792 7.763528 TCACTGTTTCATAAGTGTTTGCAAATT 59.236 29.630 16.21 8.41 43.49 1.82
4001 8831 6.238566 GGAAACTATATACGTTTTTCCCTGCC 60.239 42.308 0.00 4.23 39.48 4.85
4013 8843 4.553330 AGCATGGGGGAAACTATATACG 57.447 45.455 0.00 0.00 0.00 3.06
4014 8844 9.614792 CTATTTAGCATGGGGGAAACTATATAC 57.385 37.037 0.00 0.00 0.00 1.47
4015 8845 9.569074 TCTATTTAGCATGGGGGAAACTATATA 57.431 33.333 0.00 0.00 0.00 0.86
4024 8855 5.466127 AAAGTTCTATTTAGCATGGGGGA 57.534 39.130 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.